Query 014597
Match_columns 422
No_of_seqs 293 out of 1375
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2E-59 4.3E-64 473.4 35.9 325 1-345 85-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.9E-55 4E-60 441.9 33.3 328 1-344 47-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 4E-55 8.7E-60 424.2 31.1 286 1-343 2-299 (299)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.7E-54 5.8E-59 423.1 31.2 296 2-344 5-326 (326)
5 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-53 3.7E-58 421.3 32.8 314 6-341 1-361 (362)
6 cd05486 Cathespin_E Cathepsin 100.0 1.9E-52 4.2E-57 408.4 28.2 292 1-340 1-316 (316)
7 cd05478 pepsin_A Pepsin A, asp 100.0 3E-52 6.5E-57 407.2 28.9 288 2-340 12-317 (317)
8 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-52 6.7E-57 408.6 28.2 295 1-340 7-325 (325)
9 PTZ00165 aspartyl protease; Pr 100.0 1.3E-51 2.9E-56 418.9 30.3 296 1-345 121-450 (482)
10 cd05473 beta_secretase_like Be 100.0 1.8E-51 3.8E-56 409.1 30.4 316 1-352 4-356 (364)
11 cd05477 gastricsin Gastricsins 100.0 1.7E-51 3.7E-56 402.2 29.5 290 1-341 4-318 (318)
12 cd05485 Cathepsin_D_like Cathe 100.0 6.5E-51 1.4E-55 399.6 27.9 293 2-340 13-329 (329)
13 cd05488 Proteinase_A_fungi Fun 100.0 5.8E-51 1.2E-55 398.6 27.3 289 1-340 11-320 (320)
14 cd06098 phytepsin Phytepsin, a 100.0 1.2E-50 2.5E-55 395.9 28.2 282 1-340 11-317 (317)
15 cd05475 nucellin_like Nucellin 100.0 2.3E-50 4.9E-55 385.7 29.4 261 1-343 3-273 (273)
16 cd05487 renin_like Renin stimu 100.0 3.5E-50 7.6E-55 394.1 28.2 293 1-341 9-326 (326)
17 cd05476 pepsin_A_like_plant Ch 100.0 1E-49 2.3E-54 379.6 27.7 246 1-343 2-265 (265)
18 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-49 8.3E-54 398.0 29.1 291 1-342 140-450 (453)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 3E-48 6.4E-53 390.8 30.0 291 1-342 139-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 4.2E-48 9.1E-53 371.2 25.9 262 1-340 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-46 5.6E-51 361.7 26.9 266 1-341 3-295 (295)
22 cd05471 pepsin_like Pepsin-lik 100.0 7.3E-44 1.6E-48 341.7 27.4 262 1-340 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 3.8E-45 8.3E-50 356.5 18.7 293 2-341 3-317 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 4.2E-31 9.2E-36 233.0 11.5 157 1-177 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.3E-25 2.7E-30 197.8 13.2 142 197-340 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.1E-21 4.5E-26 159.5 11.6 106 3-140 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.1 0.0025 5.3E-08 50.1 7.3 91 1-141 3-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.1 0.14 2.9E-06 42.6 8.4 36 195-238 9-44 (121)
29 cd05479 RP_DDI RP_DDI; retrope 95.0 0.068 1.5E-06 44.6 6.2 26 313-338 99-124 (124)
30 PF08284 RVP_2: Retroviral asp 92.6 0.27 5.8E-06 41.7 5.5 27 314-340 105-131 (135)
31 TIGR03698 clan_AA_DTGF clan AA 92.0 0.8 1.7E-05 37.1 7.3 24 313-336 84-107 (107)
32 PF13650 Asp_protease_2: Aspar 88.3 2.8 6.1E-05 31.9 7.5 22 4-28 2-23 (90)
33 PF13650 Asp_protease_2: Aspar 87.5 0.68 1.5E-05 35.4 3.5 30 204-238 2-31 (90)
34 TIGR02281 clan_AA_DTGA clan AA 85.6 4.2 9.2E-05 33.6 7.4 90 2-141 13-102 (121)
35 cd05484 retropepsin_like_LTR_2 84.4 1.3 2.8E-05 34.4 3.6 30 204-238 4-33 (91)
36 PF13975 gag-asp_proteas: gag- 84.3 1.6 3.4E-05 32.5 3.9 30 204-238 12-41 (72)
37 cd05479 RP_DDI RP_DDI; retrope 81.7 9.2 0.0002 31.6 8.0 24 2-28 18-41 (124)
38 cd05483 retropepsin_like_bacte 81.3 2.4 5.2E-05 32.7 4.1 30 204-238 6-35 (96)
39 cd06095 RP_RTVL_H_like Retrope 78.4 2.3 5E-05 32.8 3.0 29 205-238 3-31 (86)
40 PF02160 Peptidase_A3: Caulifl 77.6 3.1 6.7E-05 37.6 4.0 27 313-340 91-117 (201)
41 PF00077 RVP: Retroviral aspar 70.2 3.5 7.6E-05 32.4 2.3 27 204-235 9-35 (100)
42 cd06094 RP_Saci_like RP_Saci_l 69.9 18 0.00038 28.2 5.9 21 215-235 8-28 (89)
43 cd05484 retropepsin_like_LTR_2 69.4 5.8 0.00013 30.7 3.3 25 1-28 1-25 (91)
44 COG3577 Predicted aspartyl pro 68.0 10 0.00022 34.2 4.9 37 194-238 102-138 (215)
45 cd05481 retropepsin_like_LTR_1 65.0 6.3 0.00014 30.9 2.7 30 205-239 3-33 (93)
46 KOG0012 DNA damage inducible p 62.4 42 0.00091 33.0 8.2 107 204-343 239-348 (380)
47 PF12384 Peptidase_A2B: Ty3 tr 61.9 64 0.0014 28.2 8.4 21 218-238 47-67 (177)
48 PF09668 Asp_protease: Asparty 61.7 8.6 0.00019 32.0 3.0 30 204-238 28-57 (124)
49 cd05480 NRIP_C NRIP_C; putativ 51.1 1.3E+02 0.0027 24.1 8.7 29 205-238 3-31 (103)
50 cd05482 HIV_retropepsin_like R 50.1 17 0.00037 28.2 2.8 23 4-29 2-24 (87)
51 PF13975 gag-asp_proteas: gag- 48.1 19 0.00041 26.6 2.7 25 1-28 9-33 (72)
52 PF11925 DUF3443: Protein of u 44.4 40 0.00086 33.4 5.0 23 80-104 82-104 (370)
53 cd06095 RP_RTVL_H_like Retrope 42.1 21 0.00046 27.2 2.3 17 11-28 7-23 (86)
54 COG5550 Predicted aspartyl pro 37.4 21 0.00046 29.5 1.6 20 219-238 29-49 (125)
55 PF12384 Peptidase_A2B: Ty3 tr 33.3 46 0.001 29.1 3.1 25 3-28 35-59 (177)
56 cd00303 retropepsin_like Retro 30.0 79 0.0017 22.3 3.7 21 218-238 11-31 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2e-59 Score=473.44 Aligned_cols=325 Identities=24% Similarity=0.464 Sum_probs=265.3
Q ss_pred CceeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCC---CCCCCCCC
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRS---SCKSLKDP 75 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~---~C~~~~~~ 75 (422)
++++|.||||||++.|+||| ||+++| |..|.. |..+..+.|||++|+||+.++|+++.|.... .|... +.
T Consensus 85 Y~v~i~iGTPpq~~~vi~DT-GS~l~Wv~C~~C~~---C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~ 159 (431)
T PLN03146 85 YLMNISIGTPPVPILAIADT-GSDLIWTQCKPCDD---CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NT 159 (431)
T ss_pred EEEEEEcCCCCceEEEEECC-CCCcceEcCCCCcc---cccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-CC
Confidence 36899999999999999999 999999 555543 3334568999999999999999999997642 37543 46
Q ss_pred CCceeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCchhHHhhhcC
Q 014597 76 CPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAG 155 (422)
Q Consensus 76 c~~~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl~~qL~~~g 155 (422)
|.|.+.|+|| +.+.|.+++|+|+|++..... ..++++.|||++.+.+.|.. ..+||||||++.+|+++||...
T Consensus 160 c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~- 232 (431)
T PLN03146 160 CTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQLGSS- 232 (431)
T ss_pred CeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--CCceeEecCCCCccHHHHhhHh-
Confidence 9999999997 778999999999998753221 24679999999988876642 4799999999999999999763
Q ss_pred CCCCceEEeecC-----CCceEEEECCCCC---CCCeeeecccCCCCCCceEEeEeEEEEcceEeccCC--------CcE
Q 014597 156 LIQNSFSICFDE-----NDSGSVFFGDQGP---ATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSG--------FQA 219 (422)
Q Consensus 156 ~i~~~FS~cl~~-----~~~G~l~fG~~d~---~~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~--------~~~ 219 (422)
+.++|||||.+ ...|.|+||+... ..+.|||++.+. ...+|.|+|++|+||++.+.... .++
T Consensus 233 -~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ 310 (431)
T PLN03146 233 -IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNI 310 (431)
T ss_pred -hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccccCCCCcE
Confidence 55799999964 2479999998643 236799998543 24789999999999999876422 369
Q ss_pred EEcccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCC
Q 014597 220 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299 (422)
Q Consensus 220 iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~ 299 (422)
||||||++++||+++|++|+++|.+++...+.......++.||..... ..+|+|+|+|+ |+.+.|+++.|++...+
T Consensus 311 iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~- 386 (431)
T PLN03146 311 IIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHFT-GADVKLQPLNTFVKVSE- 386 (431)
T ss_pred EEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEEC-CCeeecCcceeEEEcCC-
Confidence 999999999999999999999999988654333222346789985432 46999999997 58899999888887543
Q ss_pred ccEEEEEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEeeccccc
Q 014597 300 FTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE 345 (422)
Q Consensus 300 ~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c~~ 345 (422)
+.+|+++.... +.+|||+.|||++|||||++++|||||+.+|.+
T Consensus 387 -~~~Cl~~~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 387 -DLVCFAMIPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred -CcEEEEEecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 57899988764 579999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-55 Score=441.87 Aligned_cols=328 Identities=30% Similarity=0.529 Sum_probs=267.3
Q ss_pred CceeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++++|.||||||+|.|+||| ||+++| |..|.. .|..+..+.|+|++||||+.+.|.++.|.....|...++.|.|
T Consensus 47 Y~~~i~IGTPpq~f~v~~DT-GS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y 123 (398)
T KOG1339|consen 47 YYGNISIGTPPQSFTVVLDT-GSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPY 123 (398)
T ss_pred cEEEEecCCCCeeeEEEEeC-CCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccccCcccCCcCce
Confidence 47899999999999999999 999999 555552 2222233459999999999999999999987655555578999
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCC-CCCCeEeecCCCCCchhHHhhhcCCC
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDG-AAPDGVMGLGLGDVSVPSLLAKAGLI 157 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~Sl~~qL~~~g~i 157 (422)
.++|+|| ++++|.+++|+|+|++.+. ...+++.|||+..+.+. ... .+.|||||||++.++++.|+...+..
T Consensus 124 ~i~Ygd~-~~~~G~l~~Dtv~~~~~~~-----~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 124 SIQYGDG-SSTSGYLATDTVTFGGTTS-----LPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred EEEeCCC-CceeEEEEEEEEEEccccc-----cccccEEEEeeecCccc-cccccccceEeecCCCCccceeecccccCC
Confidence 9999996 6999999999999998531 24568999999999875 222 46899999999999999999987766
Q ss_pred CCceEEeecCC-----CceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcceE------eccCCCcEEEc
Q 014597 158 QNSFSICFDEN-----DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNSC------LTQSGFQALVD 222 (422)
Q Consensus 158 ~~~FS~cl~~~-----~~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~~------~~~~~~~~iiD 222 (422)
.++||+||.++ ..|.|+||+.|+.+ +.|+||+.+.. .+|.|++++|.||++. +.....++|+|
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIID 274 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCcceEecCCCCEEEE
Confidence 67999999876 37999999999874 46999987642 5999999999999854 22224789999
Q ss_pred ccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccE
Q 014597 223 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 302 (422)
Q Consensus 223 SGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~ 302 (422)
|||++++||+++|++|.++|.+++.. ......++..||...... ..+|.|+|+|.+|+.|.+++++|++...++...
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 99999999999999999999887511 111123556999876433 459999999987899999999999876543122
Q ss_pred EEEEEEeCCC--CceeEccceeeeeEEEEeCC-CCEEEEee--cccc
Q 014597 303 FCLTVMSTDG--DYGIIGQNFMMGHRIVFDRE-NLKLAWSH--SKCE 344 (422)
Q Consensus 303 ~Cl~i~~~~~--~~~ILG~~fl~~~yvvfD~e-~~rIGfa~--~~c~ 344 (422)
|++++.... ..||||+.||++++++||+. ++|||||+ ..|.
T Consensus 352 -Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 352 -CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred -eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 999877653 38999999999999999999 99999999 6664
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4e-55 Score=424.17 Aligned_cols=286 Identities=25% Similarity=0.441 Sum_probs=236.7
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
++++|.||||||++.|+||| ||+++|+. |. +| |.|.+
T Consensus 2 Y~~~i~iGtP~q~~~v~~DT-GSs~~Wv~-c~------------------------~c-----------------~~~~i 38 (299)
T cd05472 2 YVVTVGLGTPARDQTVIVDT-GSDLTWVQ-CQ------------------------PC-----------------CLYQV 38 (299)
T ss_pred eEEEEecCCCCcceEEEecC-CCCccccc-CC------------------------CC-----------------Ceeee
Confidence 47899999999999999999 99999972 11 01 57999
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCchhHHhhhcCCCCCc
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNS 160 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl~~qL~~~g~i~~~ 160 (422)
+|++| +.++|.+++|+|+|++.. .++++.|||+..+++.+. ..+||||||+..++++.||..+ .+++
T Consensus 39 ~Yg~G-s~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~--~~~~ 105 (299)
T cd05472 39 SYGDG-SYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS--YGGV 105 (299)
T ss_pred EeCCC-ceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh--hcCc
Confidence 99997 678999999999999751 357899999998877653 5799999999999999998764 4689
Q ss_pred eEEeecC---CCceEEEECCCCC--CCCeeeecccCCCCCCceEEeEeEEEEcceEecc-----CCCcEEEccccccccc
Q 014597 161 FSICFDE---NDSGSVFFGDQGP--ATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ-----SGFQALVDSGASFTFL 230 (422)
Q Consensus 161 FS~cl~~---~~~G~l~fG~~d~--~~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~-----~~~~~iiDSGTs~~~L 230 (422)
||+||++ ...|+|+||++|+ .++.|+|++.++....+|.|+|++|+||++.+.. ....+||||||++++|
T Consensus 106 FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~l 185 (299)
T cd05472 106 FSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRL 185 (299)
T ss_pred eEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceec
Confidence 9999986 3579999999998 4688999987654457999999999999998864 2357999999999999
Q ss_pred CHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEEEEEEeC
Q 014597 231 PTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMST 310 (422)
Q Consensus 231 p~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl~i~~~ 310 (422)
|+++|++|.+++.+++...........++.||+.++.....+|+|+|+|+++..+.|+++.|++.... .+..|+++...
T Consensus 186 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~C~~~~~~ 264 (299)
T cd05472 186 PPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD-SSQVCLAFAGT 264 (299)
T ss_pred CHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC-CCCEEEEEeCC
Confidence 99999999999988764322111112344699876655568999999998678999999999884322 25789998876
Q ss_pred C--CCceeEccceeeeeEEEEeCCCCEEEEeeccc
Q 014597 311 D--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 343 (422)
Q Consensus 311 ~--~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c 343 (422)
+ .+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 265 ~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 265 SDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 3 35799999999999999999999999999999
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.7e-54 Score=423.14 Aligned_cols=296 Identities=22% Similarity=0.378 Sum_probs=238.8
Q ss_pred ceeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCce
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYI 79 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~ 79 (422)
+++|+||||+|++.|+||| ||+++| |..|.. |..+..+.|+|++|+|++.+.|++..|.....|.+ +.|.|.
T Consensus 5 ~~~i~vGtP~Q~~~v~~DT-GS~~~wv~~~~C~~---c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~--~~~~~~ 78 (326)
T cd06096 5 FIDIFIGNPPQKQSLILDT-GSSSLSFPCSQCKN---CGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLN--NKCEYS 78 (326)
T ss_pred EEEEEecCCCeEEEEEEeC-CCCceEEecCCCCC---cCCCCCCCcCcccccccccccCCCccccccCcCCC--CcCcEE
Confidence 6899999999999999999 999999 445543 22334578999999999999999999976656654 469999
Q ss_pred eecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCc----hhHHhhhcC
Q 014597 80 ADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS----VPSLLAKAG 155 (422)
Q Consensus 80 i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S----l~~qL~~~g 155 (422)
+.|++| +.+.|.+++|+|+|++..... .+....++.|||+..+.+.|..+ ..|||||||+...+ ...+|.+++
T Consensus 79 i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred EEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCchhHHHHHhc
Confidence 999997 779999999999999764210 00122468999999888777554 57999999997642 223355555
Q ss_pred CC---CCceEEeecCCCceEEEECCCCCC--------------CCeeeecccCCCCCCceEEeEeEEEEcceE---eccC
Q 014597 156 LI---QNSFSICFDENDSGSVFFGDQGPA--------------TQQSTSFLPIGEKYDAYFVGVESYCIGNSC---LTQS 215 (422)
Q Consensus 156 ~i---~~~FS~cl~~~~~G~l~fG~~d~~--------------~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~---~~~~ 215 (422)
.+ +++||+||+++ .|.|+||++|+. .+.|+|++. ..+|.|.+++|+|+++. ....
T Consensus 156 ~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccceeccc
Confidence 44 38999999975 799999999864 356999864 37899999999999986 2235
Q ss_pred CCcEEEcccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEee
Q 014597 216 GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFP 295 (422)
Q Consensus 216 ~~~~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~ 295 (422)
...+||||||++++||+++|++|.+++ |+|+|+|++|+.+++++++|++.
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p~~y~~~ 280 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKPSSYLYK 280 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECHHHhccc
Confidence 668999999999999999999987765 78999998678999999999887
Q ss_pred cCCCccEEEEEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEeecccc
Q 014597 296 ENEGFTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCE 344 (422)
Q Consensus 296 ~~~~~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c~ 344 (422)
..+ ..+|+++... ++.+|||++|||++|+|||++++|||||+++|.
T Consensus 281 ~~~--~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 281 KES--FWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred cCC--ceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 543 3466665544 468999999999999999999999999999994
No 5
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-53 Score=421.34 Aligned_cols=314 Identities=23% Similarity=0.336 Sum_probs=249.1
Q ss_pred eecCCCce-EEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCC--C------------CCC
Q 014597 6 CFGSHANA-YNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSR--S------------SCK 70 (422)
Q Consensus 6 ~iGtP~Q~-~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~--~------------~C~ 70 (422)
++|||-.+ |.|+||| ||+++|+. | +|.+|+||+.++|+++.|... . .|.
T Consensus 1 ~~~~~~~~~~~~~~DT-GS~l~Wvq-C--------------~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~ 64 (362)
T cd05489 1 YTITPLKGAVPLVLDL-AGPLLWST-C--------------DAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCG 64 (362)
T ss_pred CcccCccCCeeEEEEC-CCCceeee-C--------------CCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCC
Confidence 46899888 9999999 99999962 2 145799999999999999753 1 343
Q ss_pred CCCCCCCceee-cCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCchhH
Q 014597 71 SLKDPCPYIAD-YSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPS 149 (422)
Q Consensus 71 ~~~~~c~~~i~-Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl~~ 149 (422)
+ +.|.|... |++| +.++|.+++|+|+|+..++.......++++.|||+..+....... .+|||||||++++|++.
T Consensus 65 ~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~-~~dGIlGLg~~~lSl~s 140 (362)
T cd05489 65 N--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPP-GAQGVAGLGRSPLSLPA 140 (362)
T ss_pred C--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCcc-ccccccccCCCccchHH
Confidence 3 35888665 7787 899999999999998643221000246799999998764221112 47999999999999999
Q ss_pred HhhhcCCCCCceEEeecCC--CceEEEECCCCC----------CCCeeeecccCCCCCCceEEeEeEEEEcceEeccC--
Q 014597 150 LLAKAGLIQNSFSICFDEN--DSGSVFFGDQGP----------ATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQS-- 215 (422)
Q Consensus 150 qL~~~g~i~~~FS~cl~~~--~~G~l~fG~~d~----------~~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~-- 215 (422)
||..++..+++||+||.++ ..|.|+||+.++ ..+.||||+.++....+|.|+|++|.||++.+...
T Consensus 141 ql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~ 220 (362)
T cd05489 141 QLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPT 220 (362)
T ss_pred HhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCch
Confidence 9988766679999999863 579999999874 45789999876544579999999999999988631
Q ss_pred --------CCcEEEcccccccccCHHHHHHHHHHHHhhccccccccc-cccccccccccc----cccccCceEEEEEcC-
Q 014597 216 --------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ-GNSWKYCYNASS----EEMLKVPDMRLIFSK- 281 (422)
Q Consensus 216 --------~~~~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~----~~~~~~P~i~~~f~g- 281 (422)
..++||||||++++||+++|++|.++|.+++...+.... ...++.||+... .....+|.|+|+|+|
T Consensus 221 ~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 221 LSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred hccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCC
Confidence 347999999999999999999999999988764332211 112368998643 224679999999987
Q ss_pred CeEEEEeCceEEeecCCCccEEEEEEEeCC---CCceeEccceeeeeEEEEeCCCCEEEEeec
Q 014597 282 NQSFVVRNHIFSFPENEGFTVFCLTVMSTD---GDYGIIGQNFMMGHRIVFDRENLKLAWSHS 341 (422)
Q Consensus 282 g~~~~l~~~~y~~~~~~~~~~~Cl~i~~~~---~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~ 341 (422)
|+.|+|++++|++...+ +.+|++|+..+ .+.||||+.|||+||++||++++|||||++
T Consensus 301 g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 79999999999987653 57899998765 347999999999999999999999999974
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.9e-52 Score=408.41 Aligned_cols=292 Identities=17% Similarity=0.317 Sum_probs=232.4
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
.+++|+||||+|+++|+||| ||+++|+ ..|... .| ..++.|+|++|+|++... |.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DT-GSs~~Wv~s~~C~~~-~C--~~~~~y~~~~SsT~~~~~------------------~~~ 58 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDT-GSSNLWVPSIYCTSQ-AC--TKHNRFQPSESSTYVSNG------------------EAF 58 (316)
T ss_pred CeEEEEECCCCcEEEEEEcC-CCccEEEecCCCCCc-cc--CccceECCCCCcccccCC------------------cEE
Confidence 47999999999999999999 9999995 445421 12 245789999999998753 789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCc------hhHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S------l~~qL~ 152 (422)
.+.|++| ++.|.+++|+|+|++. .+.++.|||+..+.+........|||||||++.++ ++++|+
T Consensus 59 ~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~ 128 (316)
T cd05486 59 SIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMM 128 (316)
T ss_pred EEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHH
Confidence 9999998 6899999999999875 45789999998776643333367999999987654 578899
Q ss_pred hcCCC-CCceEEeecCC----CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEecc-CCCcEEEc
Q 014597 153 KAGLI-QNSFSICFDEN----DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ-SGFQALVD 222 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~-~~~~~iiD 222 (422)
+||++ +++||+||.++ ..|.|+||++|+. .+.|+|++. ..+|.|++++|+||++.+.. ....+|||
T Consensus 129 ~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~~~aiiD 204 (316)
T cd05486 129 AQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDGCQAIVD 204 (316)
T ss_pred hcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCCCEEEEC
Confidence 99999 58999999853 4699999999986 467999853 47999999999999987653 45689999
Q ss_pred ccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccE
Q 014597 223 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 302 (422)
Q Consensus 223 SGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~ 302 (422)
|||++++||++++++|.+++.+.. . . .+|..+|.....+|+|+|+|+ |+.++|++++|++........
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~~-----~-~-----~~~~~~C~~~~~~p~i~f~f~-g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGATA-----T-D-----GEYGVDCSTLSLMPSVTFTIN-GIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCcc-----c-C-----CcEEEeccccccCCCEEEEEC-CEEEEeCHHHeEEecccCCCC
Confidence 999999999999999988774321 0 1 123333333357999999995 689999999998864221246
Q ss_pred EEE-EEEeCC-----CCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 303 FCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 303 ~Cl-~i~~~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
.|+ +|+..+ ++.||||+.|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 797 565432 34799999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3e-52 Score=407.22 Aligned_cols=288 Identities=22% Similarity=0.384 Sum_probs=234.8
Q ss_pred ceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCce
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYI 79 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~ 79 (422)
+++|.||||+|++.|+||| ||+++|+ ..|... .+..++.|+|++|+|++... |.|.
T Consensus 12 ~~~i~vGtp~q~~~v~~DT-GS~~~wv~~~~C~~~---~c~~~~~f~~~~Sst~~~~~------------------~~~~ 69 (317)
T cd05478 12 YGTISIGTPPQDFTVIFDT-GSSNLWVPSVYCSSQ---ACSNHNRFNPRQSSTYQSTG------------------QPLS 69 (317)
T ss_pred EEEEEeCCCCcEEEEEEeC-CCccEEEecCCCCcc---cccccCcCCCCCCcceeeCC------------------cEEE
Confidence 6899999999999999999 9999994 455432 22346899999999998754 7899
Q ss_pred eecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC------chhHHhhh
Q 014597 80 ADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------SVPSLLAK 153 (422)
Q Consensus 80 i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~------Sl~~qL~~ 153 (422)
+.|++| ++.|.+++|+|+|++. .+.++.|||+..+.+.+......|||||||+..+ +++.+|++
T Consensus 70 ~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 70 IQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred EEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHh
Confidence 999998 4899999999999975 3578999999887776544445799999998654 48899999
Q ss_pred cCCC-CCceEEeecCC--CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEecc-CCCcEEEcccc
Q 014597 154 AGLI-QNSFSICFDEN--DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ-SGFQALVDSGA 225 (422)
Q Consensus 154 ~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~-~~~~~iiDSGT 225 (422)
+|+| +++||+||.++ ..|.|+||++|+. .+.|+|+.. ..+|.|.+++|.||++.+.. ....+||||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 9999 59999999875 3699999999875 467999853 47999999999999999864 34579999999
Q ss_pred cccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEEE
Q 014597 226 SFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCL 305 (422)
Q Consensus 226 s~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl 305 (422)
++++||+++|++|.+++..... ........|+. ...+|.|+|+|+ |+.+.|+++.|++.. ..+|+
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~-----~~~~P~~~f~f~-g~~~~i~~~~y~~~~----~~~C~ 280 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQN-----QNGEMVVNCSS-----ISSMPDVVFTIN-GVQYPLPPSAYILQD----QGSCT 280 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccc-----cCCcEEeCCcC-----cccCCcEEEEEC-CEEEEECHHHheecC----CCEEe
Confidence 9999999999999998854321 01111125553 357999999995 689999999988764 36787
Q ss_pred E-EEeCC-CCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 306 T-VMSTD-GDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 306 ~-i~~~~-~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
+ |+..+ .+.||||+.|||++|+|||++++|||||+
T Consensus 281 ~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 281 SGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 5 55544 35899999999999999999999999996
No 8
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-52 Score=408.60 Aligned_cols=295 Identities=20% Similarity=0.342 Sum_probs=231.8
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
.+++|.||||+|+|.|+||| ||+++|+ ..|.... +.+..++.|+|++|+|++.. .|.|
T Consensus 7 Y~~~i~iGtP~q~~~v~~DT-GSs~~Wv~~~~C~~~~-~~C~~~~~y~~~~SsT~~~~------------------~~~~ 66 (325)
T cd05490 7 YYGEIGIGTPPQTFTVVFDT-GSSNLWVPSVHCSLLD-IACWLHHKYNSSKSSTYVKN------------------GTEF 66 (325)
T ss_pred EEEEEEECCCCcEEEEEEeC-CCccEEEEcCCCCCCC-ccccCcCcCCcccCcceeeC------------------CcEE
Confidence 36899999999999999999 9999994 4554311 01224578999999999863 3789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC------chhHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------SVPSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~------Sl~~qL~ 152 (422)
.+.|++| +++|.+++|+|+|++. .+.++.|||+..+.+........|||||||++.+ +++++|+
T Consensus 67 ~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 67 AIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred EEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 9999998 5899999999999975 3578999999987764322235799999998765 4667999
Q ss_pred hcCCC-CCceEEeecCC----CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEec-cCCCcEEEc
Q 014597 153 KAGLI-QNSFSICFDEN----DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQALVD 222 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~-~~~~~~iiD 222 (422)
++|++ +++||+||.++ ..|.|+||++|+. .+.|+|+.. ..+|.|++++|+||++... .....+|||
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~~~aiiD 212 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGGCEAIVD 212 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCCCEEEEC
Confidence 99998 69999999853 3699999999975 467898853 4799999999999987543 245689999
Q ss_pred ccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccE
Q 014597 223 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 302 (422)
Q Consensus 223 SGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~ 302 (422)
|||+++++|+++|++|.+++.+. ... .......|+. ...+|.|+|+|+ ++.++|++++|++........
T Consensus 213 SGTt~~~~p~~~~~~l~~~~~~~----~~~-~~~~~~~C~~-----~~~~P~i~f~fg-g~~~~l~~~~y~~~~~~~~~~ 281 (325)
T cd05490 213 TGTSLITGPVEEVRALQKAIGAV----PLI-QGEYMIDCEK-----IPTLPVISFSLG-GKVYPLTGEDYILKVSQRGTT 281 (325)
T ss_pred CCCccccCCHHHHHHHHHHhCCc----ccc-CCCEEecccc-----cccCCCEEEEEC-CEEEEEChHHeEEeccCCCCC
Confidence 99999999999999999988542 111 1122335554 357999999995 689999999998865432245
Q ss_pred EEE-EEEeC-----CCCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 303 FCL-TVMST-----DGDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 303 ~Cl-~i~~~-----~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
.|+ +++.. ..+.||||+.|||++|+|||++++|||||+
T Consensus 282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 797 45542 235799999999999999999999999985
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.3e-51 Score=418.87 Aligned_cols=296 Identities=19% Similarity=0.321 Sum_probs=237.0
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
.+++|.||||||+|+|+||| ||+++|+ ..|... .+..++.|||++||||+.+.++. ....+
T Consensus 121 Y~~~I~IGTPpQ~f~Vv~DT-GSS~lWVps~~C~~~---~C~~~~~yd~s~SSTy~~~~~~~-------------~~~~~ 183 (482)
T PTZ00165 121 YFGEIQVGTPPKSFVVVFDT-GSSNLWIPSKECKSG---GCAPHRKFDPKKSSTYTKLKLGD-------------ESAET 183 (482)
T ss_pred EEEEEEeCCCCceEEEEEeC-CCCCEEEEchhcCcc---cccccCCCCccccCCcEecCCCC-------------ccceE
Confidence 37899999999999999999 9999995 456421 22346789999999999854221 11257
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC---------chhH
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV---------SVPS 149 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~---------Sl~~ 149 (422)
.++|++| +.+|.+++|+|+|++. .++++.|||+..+.+......+.|||||||++.+ +++.
T Consensus 184 ~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~ 253 (482)
T PTZ00165 184 YIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVD 253 (482)
T ss_pred EEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHH
Confidence 7999998 6889999999999875 4679999999987664333346899999998753 5778
Q ss_pred HhhhcCCC-CCceEEeecCC--CceEEEECCCCCC------CCeeeecccCCCCCCceEEeEeEEEEcceEecc--CCCc
Q 014597 150 LLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPA------TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ--SGFQ 218 (422)
Q Consensus 150 qL~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~------~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~--~~~~ 218 (422)
+|++||++ +++||+||+++ .+|.|+||++|+. .+.|+|++. ..||.|.+++|.||++.+.. ....
T Consensus 254 ~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~~~~~~~~~~ 329 (482)
T PTZ00165 254 NIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKSLGFCDRKCK 329 (482)
T ss_pred HHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEEeeecCCceE
Confidence 99999999 69999999753 4799999999863 367999864 47999999999999987653 4578
Q ss_pred EEEcccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcC--C--eEEEEeCceEEe
Q 014597 219 ALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK--N--QSFVVRNHIFSF 294 (422)
Q Consensus 219 ~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g--~~~~l~~~~y~~ 294 (422)
+|+||||+++++|+++|++|.+++... ..|+.. ..+|+|+|+|+| | ..+.+++++|++
T Consensus 330 aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~-----~~lP~itf~f~g~~g~~v~~~l~p~dYi~ 391 (482)
T PTZ00165 330 AAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK-----DSLPRISFVLEDVNGRKIKFDMDPEDYVI 391 (482)
T ss_pred EEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc-----ccCCceEEEECCCCCceEEEEEchHHeee
Confidence 999999999999999999998877421 257653 479999999974 2 278899999988
Q ss_pred ecC--CCccEEEE-EEEeCC-----CCceeEccceeeeeEEEEeCCCCEEEEeeccccc
Q 014597 295 PEN--EGFTVFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEE 345 (422)
Q Consensus 295 ~~~--~~~~~~Cl-~i~~~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c~~ 345 (422)
... +.....|+ +++..+ ++.||||++|||+||+|||++|+|||||+++|..
T Consensus 392 ~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 392 EEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred ecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 641 11246785 677543 3579999999999999999999999999999864
No 10
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.8e-51 Score=409.13 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=238.1
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
.+++|.||||+|+|.|+||| ||+++|+.++... +.++.|+|++|+|++... |.|++
T Consensus 4 Y~~~i~iGtP~Q~~~v~~DT-GSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~------------------~~~~i 59 (364)
T cd05473 4 YYIEMLIGTPPQKLNILVDT-GSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLG------------------KGVTV 59 (364)
T ss_pred eEEEEEecCCCceEEEEEec-CCcceEEEcCCCc-----cccccCCchhCcCcccCC------------------ceEEE
Confidence 47899999999999999999 9999996432111 134689999999999864 78999
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC--------chhHHhh
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV--------SVPSLLA 152 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~--------Sl~~qL~ 152 (422)
+|++| +++|.+++|+|+|++... ....+.|+++....+.+......|||||||++.+ +++++|.
T Consensus 60 ~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 60 PYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EECcc--eEEEEEEEEEEEECCCCc------cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 99998 679999999999986421 1223456677655555544445799999998755 4667899
Q ss_pred hcCCCCCceEEeecC-----------CCceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEeccC--
Q 014597 153 KAGLIQNSFSICFDE-----------NDSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQS-- 215 (422)
Q Consensus 153 ~~g~i~~~FS~cl~~-----------~~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~-- 215 (422)
+|+.++++||++|.. ...|.|+||++|+. .+.|+|++. ..+|.|.+++|.|+++.+...
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~ 207 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCK 207 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccccc
Confidence 988888899997731 13699999999875 367999964 478999999999999987642
Q ss_pred ---CCcEEEcccccccccCHHHHHHHHHHHHhhccccccccc--cccccccccccccccccCceEEEEEcCC-----eEE
Q 014597 216 ---GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ--GNSWKYCYNASSEEMLKVPDMRLIFSKN-----QSF 285 (422)
Q Consensus 216 ---~~~~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg-----~~~ 285 (422)
...+||||||++++||+++|++|.+++.++......... ......|+.........+|+|+|+|+|. ..+
T Consensus 208 ~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 208 EYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred cccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 136999999999999999999999999887542211111 0112468875433334699999999763 357
Q ss_pred EEeCceEEeecCC-CccEEEEEEEe-CCCCceeEccceeeeeEEEEeCCCCEEEEeecccccccccccc
Q 014597 286 VVRNHIFSFPENE-GFTVFCLTVMS-TDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKCEEVIDKSHV 352 (422)
Q Consensus 286 ~l~~~~y~~~~~~-~~~~~Cl~i~~-~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c~~~~~~~~~ 352 (422)
.|+++.|++.... +....|+++.. ...+.+|||++|||++|+|||++++|||||+++|.+.+.-++.
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~~~ 356 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFRTS 356 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCccee
Confidence 8888888765321 12467975432 2235799999999999999999999999999999886654333
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.7e-51 Score=402.17 Aligned_cols=290 Identities=18% Similarity=0.323 Sum_probs=234.2
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++++|.||||||++.|+||| ||+++|+ ..|..+ . +..++.|+|++|+|++.. .|.|
T Consensus 4 y~~~i~iGtP~q~~~v~~DT-GS~~~wv~~~~C~~~-~--C~~~~~f~~~~SsT~~~~------------------~~~~ 61 (318)
T cd05477 4 YYGEISIGTPPQNFLVLFDT-GSSNLWVPSVLCQSQ-A--CTNHTKFNPSQSSTYSTN------------------GETF 61 (318)
T ss_pred EEEEEEECCCCcEEEEEEeC-CCccEEEccCCCCCc-c--ccccCCCCcccCCCceEC------------------CcEE
Confidence 37899999999999999999 9999994 456532 1 224578999999999874 4889
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCC------CchhHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------VSVPSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~------~Sl~~qL~ 152 (422)
++.|++| ++.|.+++|+|+|++. .+.++.|||+....+........+||||||+.. .+++++|+
T Consensus 62 ~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~ 131 (318)
T cd05477 62 SLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMM 131 (318)
T ss_pred EEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHH
Confidence 9999998 5899999999999875 457899999997665322222569999999853 46889999
Q ss_pred hcCCC-CCceEEeecCC---CceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcceEecc--CCCcEEEc
Q 014597 153 KAGLI-QNSFSICFDEN---DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ--SGFQALVD 222 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~---~~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~--~~~~~iiD 222 (422)
++|+| +++||+||.++ ..|.|+||++|+.+ +.|+|+.. ..+|.|++++|.|+++.+.. ....+|||
T Consensus 132 ~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~~~~iiD 207 (318)
T cd05477 132 QQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQGCQAIVD 207 (318)
T ss_pred hcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCCceeeEC
Confidence 99999 69999999864 46999999999753 67999853 47999999999999998752 34579999
Q ss_pred ccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccE
Q 014597 223 SGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTV 302 (422)
Q Consensus 223 SGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~ 302 (422)
|||++++||+++|++|.+++.++... ..+|..+|.....+|.|+|+|+ ++++.++++.|++.. ..
T Consensus 208 SGtt~~~lP~~~~~~l~~~~~~~~~~----------~~~~~~~C~~~~~~p~l~~~f~-g~~~~v~~~~y~~~~----~~ 272 (318)
T cd05477 208 TGTSLLTAPQQVMSTLMQSIGAQQDQ----------YGQYVVNCNNIQNLPTLTFTIN-GVSFPLPPSAYILQN----NG 272 (318)
T ss_pred CCCccEECCHHHHHHHHHHhCCcccc----------CCCEEEeCCccccCCcEEEEEC-CEEEEECHHHeEecC----CC
Confidence 99999999999999999988654321 1234444444467999999995 589999999888764 35
Q ss_pred EEE-EEEeC------CCCceeEccceeeeeEEEEeCCCCEEEEeec
Q 014597 303 FCL-TVMST------DGDYGIIGQNFMMGHRIVFDRENLKLAWSHS 341 (422)
Q Consensus 303 ~Cl-~i~~~------~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~ 341 (422)
+|+ ++++. +++.+|||+.|||++|+|||++++|||||++
T Consensus 273 ~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 273 YCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 685 77642 1247999999999999999999999999975
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=6.5e-51 Score=399.57 Aligned_cols=293 Identities=19% Similarity=0.324 Sum_probs=233.8
Q ss_pred ceeEeecCCCceEEEEEecCCCCeee--eecccCCc-cccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLW--CLLVFGAS-IVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~-~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
+++|.||||+|++.|+||| ||+++| |..|.... .| ..++.|+|++|+|++... |.|
T Consensus 13 ~~~i~vGtP~q~~~v~~DT-GSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------------~~~ 71 (329)
T cd05485 13 YGVITIGTPPQSFKVVFDT-GSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------------TEF 71 (329)
T ss_pred EEEEEECCCCcEEEEEEcC-CCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------------eEE
Confidence 6899999999999999999 999999 44554221 12 235789999999998753 789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCc------hhHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S------l~~qL~ 152 (422)
.+.|++| +++|.+++|+|+|++. ...++.|||+..+.+........+||||||++..+ ++.+|+
T Consensus 72 ~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~ 141 (329)
T cd05485 72 AIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMV 141 (329)
T ss_pred EEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHH
Confidence 9999998 5899999999999875 35689999998776642233357999999998665 467899
Q ss_pred hcCCC-CCceEEeecCC----CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEeccCCCcEEEcc
Q 014597 153 KAGLI-QNSFSICFDEN----DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDS 223 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~~~~iiDS 223 (422)
++|+| +++||+||.+. ..|+|+||++|+. .+.|+|+.. ..+|.|.++++.|+++.+......+||||
T Consensus 142 ~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~~~~iiDS 217 (329)
T cd05485 142 NQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGGCQAIADT 217 (329)
T ss_pred hCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCCcEEEEcc
Confidence 99999 68999999863 3699999999875 457999853 47999999999999998875667899999
Q ss_pred cccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEE
Q 014597 224 GASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVF 303 (422)
Q Consensus 224 GTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~ 303 (422)
||++++||+++|++|.+++.... .. ..||..+|.....+|.|+|+|+ ++.+.|++++|++...+....+
T Consensus 218 Gtt~~~lP~~~~~~l~~~~~~~~----~~------~~~~~~~C~~~~~~p~i~f~fg-g~~~~i~~~~yi~~~~~~~~~~ 286 (329)
T cd05485 218 GTSLIAGPVDEIEKLNNAIGAKP----II------GGEYMVNCSAIPSLPDITFVLG-GKSFSLTGKDYVLKVTQMGQTI 286 (329)
T ss_pred CCcceeCCHHHHHHHHHHhCCcc----cc------CCcEEEeccccccCCcEEEEEC-CEEeEEChHHeEEEecCCCCCE
Confidence 99999999999999988875421 11 1233344433457899999995 6899999999988754322467
Q ss_pred EE-EEEeCC-----CCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 304 CL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 304 Cl-~i~~~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
|+ +++..+ ++.||||+.|||++|+|||++++|||||+
T Consensus 287 C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 287 CLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 87 466421 34799999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.8e-51 Score=398.63 Aligned_cols=289 Identities=20% Similarity=0.335 Sum_probs=231.9
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++++|.||||+|++.|+||| ||+++|+ ..|... .|. .++.|+|++|+|++.. .|.|
T Consensus 11 Y~~~i~iGtp~q~~~v~~DT-GSs~~wv~~~~C~~~-~C~--~~~~y~~~~Sst~~~~------------------~~~~ 68 (320)
T cd05488 11 YFTDITLGTPPQKFKVILDT-GSSNLWVPSVKCGSI-ACF--LHSKYDSSASSTYKAN------------------GTEF 68 (320)
T ss_pred EEEEEEECCCCcEEEEEEec-CCcceEEEcCCCCCc-ccC--CcceECCCCCcceeeC------------------CCEE
Confidence 47899999999999999999 9999994 455421 122 3468999999999864 4789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCch------hHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV------PSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl------~~qL~ 152 (422)
.+.|++| +++|.+++|+|+|++. .+.++.|||+..+.+........|||||||++..+. ..+|+
T Consensus 69 ~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 69 KIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred EEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 9999998 5899999999999875 356899999987766533333579999999987643 34788
Q ss_pred hcCCC-CCceEEeecCC--CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEeccCCCcEEEcccc
Q 014597 153 KAGLI-QNSFSICFDEN--DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGA 225 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~~~~iiDSGT 225 (422)
++|+| +++||+||.+. ..|.|+||++|+. .+.|+|++. ..+|.|++++|.||++.+......++|||||
T Consensus 139 ~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGt 214 (320)
T cd05488 139 NQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELENTGAAIDTGT 214 (320)
T ss_pred hcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCCCeEEEcCCc
Confidence 99999 68999999864 5799999999875 467999864 4789999999999999887666789999999
Q ss_pred cccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEEE
Q 014597 226 SFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCL 305 (422)
Q Consensus 226 s~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl 305 (422)
++++||++++++|.+++.+... ...+|..+|.....+|.|+|+|+ ++++.|++++|++.. ...|+
T Consensus 215 t~~~lp~~~~~~l~~~~~~~~~----------~~~~~~~~C~~~~~~P~i~f~f~-g~~~~i~~~~y~~~~----~g~C~ 279 (320)
T cd05488 215 SLIALPSDLAEMLNAEIGAKKS----------WNGQYTVDCSKVDSLPDLTFNFD-GYNFTLGPFDYTLEV----SGSCI 279 (320)
T ss_pred ccccCCHHHHHHHHHHhCCccc----------cCCcEEeeccccccCCCEEEEEC-CEEEEECHHHheecC----CCeEE
Confidence 9999999999999888753321 12233444433457999999995 689999999998753 24698
Q ss_pred EEEe-CC-----CCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 306 TVMS-TD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 306 ~i~~-~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
+.+. .+ .+.||||+.|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 280 SAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 5443 21 24799999999999999999999999986
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.2e-50 Score=395.89 Aligned_cols=282 Identities=23% Similarity=0.378 Sum_probs=225.8
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++++|.||||+|++.|+||| ||+++|+ ..|.....|. .++.|+|++|+|++... +.+
T Consensus 11 Y~~~i~iGtP~Q~~~v~~DT-GSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------~~~ 69 (317)
T cd06098 11 YFGEIGIGTPPQKFTVIFDT-GSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG------------------TSA 69 (317)
T ss_pred EEEEEEECCCCeEEEEEECC-CccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC------------------CEE
Confidence 36899999999999999999 9999994 5564222232 35789999999998753 678
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCc------hhHHhh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS------VPSLLA 152 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S------l~~qL~ 152 (422)
.+.|++| .++|.+++|+|+|++. .+.++.|||+..+.+........|||||||+...+ ++.+|+
T Consensus 70 ~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 70 SIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred EEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 9999998 5899999999999875 45789999998765532223367999999987653 567899
Q ss_pred hcCCC-CCceEEeecCC----CceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcceEecc--CCCcEEE
Q 014597 153 KAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ--SGFQALV 221 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~--~~~~~ii 221 (422)
++|+| +++||+||.++ ..|.|+||++|+.+ +.|+|++. ..+|.|.+++|.|+++.+.. ....+||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~~~aiv 215 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGGCAAIA 215 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCCcEEEE
Confidence 99998 58999999753 47999999999864 57999853 47999999999999988653 3467999
Q ss_pred cccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCcc
Q 014597 222 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFT 301 (422)
Q Consensus 222 DSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~ 301 (422)
||||++++||++++++|. ....|+.. ..+|.|+|+|+ ++.+.|++++|++...++..
T Consensus 216 DTGTs~~~lP~~~~~~i~-----------------~~~~C~~~-----~~~P~i~f~f~-g~~~~l~~~~yi~~~~~~~~ 272 (317)
T cd06098 216 DSGTSLLAGPTTIVTQIN-----------------SAVDCNSL-----SSMPNVSFTIG-GKTFELTPEQYILKVGEGAA 272 (317)
T ss_pred ecCCcceeCCHHHHHhhh-----------------ccCCcccc-----ccCCcEEEEEC-CEEEEEChHHeEEeecCCCC
Confidence 999999999998876653 12357753 46899999995 68999999999886543334
Q ss_pred EEEE-EEEeCC-----CCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 302 VFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 302 ~~Cl-~i~~~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
..|+ +++..+ ++.||||++|||+||+|||++++|||||+
T Consensus 273 ~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 273 AQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 6897 455422 34799999999999999999999999995
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.3e-50 Score=385.72 Aligned_cols=261 Identities=28% Similarity=0.525 Sum_probs=215.8
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
++++|.||||||++.|+||| ||+++|+. |.. +|. .| .|.|.+
T Consensus 3 Y~~~i~iGtP~q~~~v~~DT-GS~~~Wv~-c~~-----------------------~c~--------~c-----~c~~~i 44 (273)
T cd05475 3 YYVTINIGNPPKPYFLDIDT-GSDLTWLQ-CDA-----------------------PCT--------GC-----QCDYEI 44 (273)
T ss_pred eEEEEEcCCCCeeEEEEEcc-CCCceEEe-CCC-----------------------CCC--------CC-----cCccEe
Confidence 47899999999999999999 99999973 210 111 11 388999
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCC-CCCCCCeEeecCCCCCchhHHhhhcCCCCC
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYL-DGAAPDGVMGLGLGDVSVPSLLAKAGLIQN 159 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~-~~~~~dGIlGLg~~~~Sl~~qL~~~g~i~~ 159 (422)
+|+|| +.++|.+++|+|+|+...+. ....++.|||+..+.+.+. .....|||||||++..++++||++++++++
T Consensus 45 ~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~ 119 (273)
T cd05475 45 EYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKN 119 (273)
T ss_pred EeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCc
Confidence 99986 69999999999999754321 2457899999987765432 233679999999999999999999998999
Q ss_pred ceEEeecCCCceEEEECCCCC--CCCeeeecccCCCCCCceEEeEeEEEEcceEeccCCCcEEEcccccccccCHHHHHH
Q 014597 160 SFSICFDENDSGSVFFGDQGP--ATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAE 237 (422)
Q Consensus 160 ~FS~cl~~~~~G~l~fG~~d~--~~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~ 237 (422)
+||+||+++..|.|+||+... ..+.|+|++.++ ...+|.|++++|+||++.+......+||||||++++||+++|
T Consensus 120 ~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y-- 196 (273)
T cd05475 120 VIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY-- 196 (273)
T ss_pred eEEEEccCCCCeEEEECCCCCCCCCeeecccccCC-CCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc--
Confidence 999999987679999997543 247899997653 247999999999999997665667899999999999999876
Q ss_pred HHHHHHhhccccccccccccccccccccccccccCceEEEEEcCC---eEEEEeCceEEeecCCCccEEEEEEEeCC---
Q 014597 238 VVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKN---QSFVVRNHIFSFPENEGFTVFCLTVMSTD--- 311 (422)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~y~~~~~~~~~~~Cl~i~~~~--- 311 (422)
+|+|+|+|+++ +.++|+++.|++...+ +..|++++...
T Consensus 197 ----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~ 240 (273)
T cd05475 197 ----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGILNGSEIG 240 (273)
T ss_pred ----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEEecCCCcC
Confidence 58899999765 6899999999886543 56899988643
Q ss_pred -CCceeEccceeeeeEEEEeCCCCEEEEeeccc
Q 014597 312 -GDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 343 (422)
Q Consensus 312 -~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c 343 (422)
.+.||||+.|||++|+|||++++|||||+++|
T Consensus 241 ~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 241 LGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 24799999999999999999999999999999
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.5e-50 Score=394.07 Aligned_cols=293 Identities=19% Similarity=0.360 Sum_probs=230.3
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
.+++|+||||+|+++|+||| ||+++|+ ..|.... +.+..++.|+|++|+|++.. .|.|
T Consensus 9 y~~~i~iGtP~q~~~v~~DT-GSs~~Wv~~~~C~~~~-~~c~~~~~y~~~~SsT~~~~------------------~~~~ 68 (326)
T cd05487 9 YYGEIGIGTPPQTFKVVFDT-GSSNLWVPSSKCSPLY-TACVTHNLYDASDSSTYKEN------------------GTEF 68 (326)
T ss_pred EEEEEEECCCCcEEEEEEeC-CccceEEccCCCcCcc-hhhcccCcCCCCCCeeeeEC------------------CEEE
Confidence 36899999999999999999 9999995 3454321 01224578999999999875 3889
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCC-CCCCCCCCCeEeecCCCCC------chhHHh
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG-SYLDGAAPDGVMGLGLGDV------SVPSLL 151 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g-~~~~~~~~dGIlGLg~~~~------Sl~~qL 151 (422)
++.|++| +++|.+++|+|+|++.. + ++.|||+....+ .|. ....|||||||++.. +++.+|
T Consensus 69 ~~~Yg~g--~~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~~-~~~~dGilGLg~~~~s~~~~~~~~~~L 136 (326)
T cd05487 69 TIHYASG--TVKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPFM-LAKFDGVLGMGYPKQAIGGVTPVFDNI 136 (326)
T ss_pred EEEeCCc--eEEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCccc-eeecceEEecCChhhcccCCCCHHHHH
Confidence 9999998 58999999999999752 2 478999886543 222 225799999998654 467789
Q ss_pred hhcCCC-CCceEEeecCC----CceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcceEecc-CCCcEEE
Q 014597 152 AKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ-SGFQALV 221 (422)
Q Consensus 152 ~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~-~~~~~ii 221 (422)
++||+| +++||+||.++ ..|.|+||++|+.+ +.|+|+.. ..+|.|++++|.|+++.+.. ....+||
T Consensus 137 ~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~~~aii 212 (326)
T cd05487 137 MSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDGCTAVV 212 (326)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCCCEEEE
Confidence 999999 68999999863 47999999999864 45777642 47999999999999998753 3457999
Q ss_pred cccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCcc
Q 014597 222 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFT 301 (422)
Q Consensus 222 DSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~ 301 (422)
||||++++||+++|+++.+++.+... .......|.. ...+|.|+|+|+ ++.+.|+++.|++...+...
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~-----~~~~P~i~f~fg-g~~~~v~~~~yi~~~~~~~~ 280 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNE-----VPTLPDISFHLG-GKEYTLSSSDYVLQDSDFSD 280 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCccc------CCCEEEeccc-----cCCCCCEEEEEC-CEEEEeCHHHhEEeccCCCC
Confidence 99999999999999999998854321 1112234554 357899999994 68999999999887643334
Q ss_pred EEEE-EEEeCC-----CCceeEccceeeeeEEEEeCCCCEEEEeec
Q 014597 302 VFCL-TVMSTD-----GDYGIIGQNFMMGHRIVFDRENLKLAWSHS 341 (422)
Q Consensus 302 ~~Cl-~i~~~~-----~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~ 341 (422)
..|+ +++..+ ++.||||+.|||++|+|||++++|||||++
T Consensus 281 ~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 281 KLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 6786 566432 247999999999999999999999999975
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1e-49 Score=379.64 Aligned_cols=246 Identities=26% Similarity=0.493 Sum_probs=213.3
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
++++|+||||+|++.|+||| ||+++|+.+ |.|.+
T Consensus 2 Y~~~i~iGtP~q~~~v~~DT-GSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 2 YLVTLSIGTPPQPFSLIVDT-GSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred eEEEEecCCCCcceEEEecC-CCCCEEEcC---------------------------------------------CceEe
Confidence 47899999999999999999 999999831 45899
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCchhHHhhhcCCCCCc
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNS 160 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl~~qL~~~g~i~~~ 160 (422)
.|+|| +.++|.+++|+|+|++.. ..++++.|||+..+.+ +.. ...+||||||+...|++.||+.++ ++
T Consensus 36 ~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~~~-~~~~GIlGLg~~~~s~~~ql~~~~---~~ 103 (265)
T cd05476 36 SYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-GSF-GGADGILGLGRGPLSLVSQLGSTG---NK 103 (265)
T ss_pred EeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-Ccc-CCCCEEEECCCCcccHHHHhhccc---Ce
Confidence 99986 799999999999999862 1357899999998876 332 367999999999999999999887 89
Q ss_pred eEEeecC----CCceEEEECCCCC---CCCeeeecccCCCCCCceEEeEeEEEEcceEec----------cCCCcEEEcc
Q 014597 161 FSICFDE----NDSGSVFFGDQGP---ATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLT----------QSGFQALVDS 223 (422)
Q Consensus 161 FS~cl~~----~~~G~l~fG~~d~---~~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~----------~~~~~~iiDS 223 (422)
||+||.+ ...|+|+||++|+ ..+.|+|++.++....+|.|++++|.|+++.+. .....+||||
T Consensus 104 Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DT 183 (265)
T cd05476 104 FSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDS 183 (265)
T ss_pred eEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeC
Confidence 9999986 3579999999998 467899998764445799999999999999874 2356799999
Q ss_pred cccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEE
Q 014597 224 GASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVF 303 (422)
Q Consensus 224 GTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~ 303 (422)
||++++||+++| |+|+|+|+++..|.+++++|++... .+.+
T Consensus 184 GTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~ 224 (265)
T cd05476 184 GTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVG--EGVV 224 (265)
T ss_pred CCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECC--CCCE
Confidence 999999999887 7899999867899999999988543 2678
Q ss_pred EEEEEeC-CCCceeEccceeeeeEEEEeCCCCEEEEeeccc
Q 014597 304 CLTVMST-DGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 343 (422)
Q Consensus 304 Cl~i~~~-~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c 343 (422)
|++++.. ..+.+|||++|||++|+|||++++|||||+++|
T Consensus 225 C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 225 CLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 9999887 456899999999999999999999999999999
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.8e-49 Score=397.99 Aligned_cols=291 Identities=20% Similarity=0.301 Sum_probs=228.4
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++|+|+||||||+|+|+||| ||+++|+ ..|.. +.+..++.|||++|+|++... |.|
T Consensus 140 Y~~~I~IGTP~Q~f~Vi~DT-GSsdlWVps~~C~~---~~C~~~~~yd~s~SsT~~~~~------------------~~f 197 (453)
T PTZ00147 140 SYGEAKLGDNGQKFNFIFDT-GSANLWVPSIKCTT---EGCETKNLYDSSKSKTYEKDG------------------TKV 197 (453)
T ss_pred EEEEEEECCCCeEEEEEEeC-CCCcEEEeecCCCc---ccccCCCccCCccCcceEECC------------------CEE
Confidence 37899999999999999999 9999994 45542 122345789999999998754 789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCC--CCCCCCCCeEeecCCCCCc------hhHH
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGS--YLDGAAPDGVMGLGLGDVS------VPSL 150 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~--~~~~~~~dGIlGLg~~~~S------l~~q 150 (422)
.+.|++| +++|.+++|+|+||+. .++ ..|+|+..+.+. +......|||||||++.++ ++.+
T Consensus 198 ~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~ 266 (453)
T PTZ00147 198 EMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVE 266 (453)
T ss_pred EEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHH
Confidence 9999998 5899999999999975 233 579998876542 2233367999999997654 5678
Q ss_pred hhhcCCC-CCceEEeecCC--CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEeccCCCcEEEcc
Q 014597 151 LAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDS 223 (422)
Q Consensus 151 L~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~~~~iiDS 223 (422)
|++||+| +++||+||++. ..|.|+||++|+. .+.|+|+.. ..+|.|.++ +.+++... ....+||||
T Consensus 267 L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~--~~~~aIiDS 339 (453)
T PTZ00147 267 LKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS--EKANVIVDS 339 (453)
T ss_pred HHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec--CceeEEECC
Confidence 9999999 58999999863 5799999999976 467999842 479999998 57776542 456799999
Q ss_pred cccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEE
Q 014597 224 GASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVF 303 (422)
Q Consensus 224 GTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~ 303 (422)
||++++||+++++++.+++.... ..........|+. ..+|+|+|.|+ +..++|+++.|++...+.....
T Consensus 340 GTsli~lP~~~~~ai~~~l~~~~----~~~~~~y~~~C~~------~~lP~~~f~f~-g~~~~L~p~~yi~~~~~~~~~~ 408 (453)
T PTZ00147 340 GTSVITVPTEFLNKFVESLDVFK----VPFLPLYVTTCNN------TKLPTLEFRSP-NKVYTLEPEYYLQPIEDIGSAL 408 (453)
T ss_pred CCchhcCCHHHHHHHHHHhCCee----cCCCCeEEEeCCC------CCCCeEEEEEC-CEEEEECHHHheeccccCCCcE
Confidence 99999999999999998885421 1111122346774 36899999996 5889999999887543222457
Q ss_pred EE-EEEeCC--CCceeEccceeeeeEEEEeCCCCEEEEeecc
Q 014597 304 CL-TVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342 (422)
Q Consensus 304 Cl-~i~~~~--~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~ 342 (422)
|+ +++..+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 409 C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 409 CMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 97 576643 3479999999999999999999999999986
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3e-48 Score=390.81 Aligned_cols=291 Identities=16% Similarity=0.255 Sum_probs=224.8
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee--ecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC--LLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc--~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
++|+|.||||+|+|+|+||| ||+++|+ ..|... .+..++.|+|++|+|++... |.|
T Consensus 139 Yy~~i~IGTP~Q~f~vi~DT-GSsdlWV~s~~C~~~---~C~~~~~yd~s~SsT~~~~~------------------~~~ 196 (450)
T PTZ00013 139 FYGEGEVGDNHQKFMLIFDT-GSANLWVPSKKCDSI---GCSIKNLYDSSKSKSYEKDG------------------TKV 196 (450)
T ss_pred EEEEEEECCCCeEEEEEEeC-CCCceEEecccCCcc---ccccCCCccCccCcccccCC------------------cEE
Confidence 37899999999999999999 9999994 455421 12345789999999998754 789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCC--CCCCCCCCCeEeecCCCCC------chhHH
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG--SYLDGAAPDGVMGLGLGDV------SVPSL 150 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g--~~~~~~~~dGIlGLg~~~~------Sl~~q 150 (422)
.+.|++| +++|.+++|+|+|++.. . ...||++....+ .......+|||||||+..+ +++.+
T Consensus 197 ~i~YG~G--sv~G~~~~Dtv~iG~~~--------~-~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~ 265 (450)
T PTZ00013 197 DITYGSG--TVKGFFSKDLVTLGHLS--------M-PYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVE 265 (450)
T ss_pred EEEECCc--eEEEEEEEEEEEECCEE--------E-ccEEEEEEeccccccceecccccceecccCCccccccCCCHHHH
Confidence 9999998 59999999999999852 2 357888876532 1122335799999998765 46789
Q ss_pred hhhcCCC-CCceEEeecCC--CceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcceEeccCCCcEEEcc
Q 014597 151 LAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDS 223 (422)
Q Consensus 151 L~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~~~~~~~~iiDS 223 (422)
|++||+| +++||+||++. ..|.|+|||+|+.+ +.|+|+.. ..+|.|+++ +.+|.... ....+||||
T Consensus 266 L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~--~~~~aIlDS 338 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM--QKANVIVDS 338 (450)
T ss_pred HHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceec--cccceEECC
Confidence 9999999 57999999853 57999999999864 67999853 479999998 67765443 345799999
Q ss_pred cccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEE
Q 014597 224 GASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVF 303 (422)
Q Consensus 224 GTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~ 303 (422)
||+++++|+++++++.+++.... ..........|+. ..+|+|+|.|+ +..++|+++.|+.......+..
T Consensus 339 GTSli~lP~~~~~~i~~~l~~~~----~~~~~~y~~~C~~------~~lP~i~F~~~-g~~~~L~p~~Yi~~~~~~~~~~ 407 (450)
T PTZ00013 339 GTTTITAPSEFLNKFFANLNVIK----VPFLPFYVTTCDN------KEMPTLEFKSA-NNTYTLEPEYYMNPLLDVDDTL 407 (450)
T ss_pred CCccccCCHHHHHHHHHHhCCee----cCCCCeEEeecCC------CCCCeEEEEEC-CEEEEECHHHheehhccCCCCe
Confidence 99999999999999888775321 1111122346764 36899999996 5889999988876432112457
Q ss_pred EE-EEEeCC--CCceeEccceeeeeEEEEeCCCCEEEEeecc
Q 014597 304 CL-TVMSTD--GDYGIIGQNFMMGHRIVFDRENLKLAWSHSK 342 (422)
Q Consensus 304 Cl-~i~~~~--~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~ 342 (422)
|+ ++++.+ ++.||||++|||++|+|||++++|||||+++
T Consensus 408 C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 408 CMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 96 666543 3579999999999999999999999999875
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.2e-48 Score=371.18 Aligned_cols=262 Identities=21% Similarity=0.304 Sum_probs=211.1
Q ss_pred CceeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCc
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPY 78 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~ 78 (422)
.+++|+||||+|++.|+||| ||+++| |..|..+ .+..++.|+|++|+|++... .|.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DT-GS~~~wv~~~~c~~~---~~~~~~~y~~~~Sst~~~~~-----------------~~~~ 59 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDT-GSSDLWVFSSETPAA---QQGGHKLYDPSKSSTAKLLP-----------------GATW 59 (278)
T ss_pred CeeeEEECCCCcEEEEEEeC-CCCceeEeeCCCCch---hhccCCcCCCccCccceecC-----------------CcEE
Confidence 47899999999999999999 999999 4455432 22345679999999998754 4789
Q ss_pred eeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC---------chhH
Q 014597 79 IADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV---------SVPS 149 (422)
Q Consensus 79 ~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~---------Sl~~ 149 (422)
.+.|++| +.++|.+++|+|+|++. .+.++.|||++.+.+.+......|||||||+... ++..
T Consensus 60 ~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~ 130 (278)
T cd06097 60 SISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFE 130 (278)
T ss_pred EEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHH
Confidence 9999997 67999999999999875 4578999999987764434446899999998754 3566
Q ss_pred HhhhcCCCCCceEEeecCCCceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcceEe-ccCCCcEEEccc
Q 014597 150 LLAKAGLIQNSFSICFDENDSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNSCL-TQSGFQALVDSG 224 (422)
Q Consensus 150 qL~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~~~-~~~~~~~iiDSG 224 (422)
+|.+++. +++||+||.+...|+|+||++|+. ++.|+|++.. ..+|.|++++|.|+++.. ......+|||||
T Consensus 131 ~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSG 206 (278)
T cd06097 131 NALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTG 206 (278)
T ss_pred HHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEEeecC
Confidence 7887755 799999999766899999999975 4789998653 479999999999999843 335678999999
Q ss_pred ccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEE
Q 014597 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFC 304 (422)
Q Consensus 225 Ts~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~C 304 (422)
|++++||++++++|.+++.... ... ...+|..+|.. .+|+|+|+|
T Consensus 207 Ts~~~lP~~~~~~l~~~l~g~~----~~~----~~~~~~~~C~~--~~P~i~f~~------------------------- 251 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVPGAY----YDS----EYGGWVFPCDT--TLPDLSFAV------------------------- 251 (278)
T ss_pred CchhcCCHHHHHHHHHhCcCCc----ccC----CCCEEEEECCC--CCCCEEEEE-------------------------
Confidence 9999999999999988873211 111 12345555543 289999998
Q ss_pred EEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 305 LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 305 l~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ---------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ---------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ---------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 699999999999999999999999985
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-46 Score=361.68 Aligned_cols=266 Identities=22% Similarity=0.383 Sum_probs=219.4
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
++++|.||||+|++.|+||| ||+++|+. .|++
T Consensus 3 Y~~~i~iGtp~q~~~v~~DT-gS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 3 YSAELSVGTPPQKVTVLLDT-GSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred EEEEEEECCCCcEEEEEEeC-CCCcceee-----------------------------------------------eeEE
Confidence 36899999999999999999 99999992 2789
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCC-----------chhH
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV-----------SVPS 149 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~-----------Sl~~ 149 (422)
.|++| +.+.|.+++|+|+|++. .+.++.|||++... ..+||||||+... +++.
T Consensus 35 ~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~ 98 (295)
T cd05474 35 SYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPI 98 (295)
T ss_pred EeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHH
Confidence 99996 69999999999999875 34689999999732 3689999998775 6999
Q ss_pred HhhhcCCC-CCceEEeecCC--CceEEEECCCCCCC----CeeeecccCCC--CCCceEEeEeEEEEcceEec----cCC
Q 014597 150 LLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT----QQSTSFLPIGE--KYDAYFVGVESYCIGNSCLT----QSG 216 (422)
Q Consensus 150 qL~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~----~~~tp~~~~~~--~~~~y~V~l~~i~vg~~~~~----~~~ 216 (422)
||+++|+| +++||+||++. ..|.|+||++|+.+ +.|+|++.... ...+|.|.+++|.|+++.+. ...
T Consensus 99 ~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~ 178 (295)
T cd05474 99 ALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKN 178 (295)
T ss_pred HHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCC
Confidence 99999999 58999999974 57999999998754 57999976532 23789999999999998863 245
Q ss_pred CcEEEcccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeec
Q 014597 217 FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPE 296 (422)
Q Consensus 217 ~~~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~ 296 (422)
..+||||||++++||+++|++|.+++.+..... .......|+.. .. |.|+|+|+| .++.|+++.|++..
T Consensus 179 ~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~~-----~~-p~i~f~f~g-~~~~i~~~~~~~~~ 247 (295)
T cd05474 179 LPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDAK-----DD-GSLTFNFGG-ATISVPLSDLVLPA 247 (295)
T ss_pred ccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCCC-----CC-CEEEEEECC-eEEEEEHHHhEecc
Confidence 679999999999999999999999997654321 11234567754 23 999999964 88999998888765
Q ss_pred CC--CccEEE-EEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEeec
Q 014597 297 NE--GFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHS 341 (422)
Q Consensus 297 ~~--~~~~~C-l~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~ 341 (422)
.. .....| +++++.+.+.+|||+.|||++|++||++++|||||++
T Consensus 248 ~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 248 STDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 31 124566 5888776578999999999999999999999999985
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.3e-44 Score=341.69 Aligned_cols=262 Identities=25% Similarity=0.457 Sum_probs=214.9
Q ss_pred CceeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCC--CCCCCCCCCcccCCCCcCCCCCCCCCCCCCCC
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSE--YDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPC 76 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~--y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c 76 (422)
++++|.||||+|++.|+||| ||+++| |..|..+.. +.... |++..|++++. ..|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DT-GS~~~wv~~~~c~~~~~---~~~~~~~~~~~~s~~~~~------------------~~~ 58 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDT-GSSLLWVPSSNCTSCSC---QKHPRFKYDSSKSSTYKD------------------TGC 58 (283)
T ss_pred CEEEEEECCCCcEEEEEEeC-CCCCEEEecCCCCcccc---ccCCCCccCccCCceeec------------------CCC
Confidence 46899999999999999999 999999 455543321 11122 67777666554 358
Q ss_pred CceeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCC------CchhHH
Q 014597 77 PYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------VSVPSL 150 (422)
Q Consensus 77 ~~~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~------~Sl~~q 150 (422)
.|.+.|++| .++|.+++|+|+|++. ...++.|||+....+.+.. ...+||||||+.. .+++.|
T Consensus 59 ~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~~s~~~~ 127 (283)
T cd05471 59 TFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDFSS-SGFDGILGLGFPSLSVDGVPSFFDQ 127 (283)
T ss_pred EEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCcccc-cccceEeecCCcccccccCCCHHHH
Confidence 999999997 7999999999999986 3579999999988763332 2679999999987 789999
Q ss_pred hhhcCCC-CCceEEeecCC----CceEEEECCCCCC----CCeeeecccCCCCCCceEEeEeEEEEcce--EeccCCCcE
Q 014597 151 LAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPA----TQQSTSFLPIGEKYDAYFVGVESYCIGNS--CLTQSGFQA 219 (422)
Q Consensus 151 L~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~----~~~~tp~~~~~~~~~~y~V~l~~i~vg~~--~~~~~~~~~ 219 (422)
|.++++| +++||+||.+. ..|.|+||++++. .+.|+|++.. ...+|.|.+++|.|+++ ........+
T Consensus 128 l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 205 (283)
T cd05471 128 LKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGA 205 (283)
T ss_pred HHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEE
Confidence 9999987 79999999973 6899999999975 5779999764 25799999999999997 344456689
Q ss_pred EEcccccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCC
Q 014597 220 LVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEG 299 (422)
Q Consensus 220 iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~ 299 (422)
+|||||++++||+++|++|.+++.+.... ...|+...+.....+|.|+|+|
T Consensus 206 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f-------------------- 256 (283)
T cd05471 206 IVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF-------------------- 256 (283)
T ss_pred EEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE--------------------
Confidence 99999999999999999999999776543 1244555555557899999999
Q ss_pred ccEEEEEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 300 FTVFCLTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 300 ~~~~Cl~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
.+|||+.|||++|++||.+++|||||+
T Consensus 257 --------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 --------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred --------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999985
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.8e-45 Score=356.55 Aligned_cols=293 Identities=24% Similarity=0.437 Sum_probs=233.4
Q ss_pred ceeEeecCCCceEEEEEecCCCCeeeee--cccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCce
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLWCL--LVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYI 79 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~--~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~ 79 (422)
+++|.||||+|+++|+||| ||+++|+. .|.... .+.....|++.+|+|++... +.+.
T Consensus 3 ~~~v~iGtp~q~~~~~iDT-GS~~~wv~~~~c~~~~--~~~~~~~y~~~~S~t~~~~~------------------~~~~ 61 (317)
T PF00026_consen 3 YINVTIGTPPQTFRVLIDT-GSSDTWVPSSNCNSCS--SCASSGFYNPSKSSTFSNQG------------------KPFS 61 (317)
T ss_dssp EEEEEETTTTEEEEEEEET-TBSSEEEEBTTECSHT--HHCTSC-BBGGGSTTEEEEE------------------EEEE
T ss_pred EEEEEECCCCeEEEEEEec-ccceeeeceecccccc--ccccccccccccccccccce------------------eeee
Confidence 6899999999999999999 99999953 343321 11235789999999998864 6799
Q ss_pred eecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCC-------CCchhHHhh
Q 014597 80 ADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG-------DVSVPSLLA 152 (422)
Q Consensus 80 i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~-------~~Sl~~qL~ 152 (422)
+.|++| .++|.+++|+|+|++. ...++.||++....+........+||||||+. ..+++.+|+
T Consensus 62 ~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 62 ISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred eeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 999998 4999999999999985 45689999999865532222357999999964 247889999
Q ss_pred hcCCC-CCceEEeecCCC--ceEEEECCCCCCC----CeeeecccCCCCCCceEEeEeEEEEcce-EeccCCCcEEEccc
Q 014597 153 KAGLI-QNSFSICFDEND--SGSVFFGDQGPAT----QQSTSFLPIGEKYDAYFVGVESYCIGNS-CLTQSGFQALVDSG 224 (422)
Q Consensus 153 ~~g~i-~~~FS~cl~~~~--~G~l~fG~~d~~~----~~~tp~~~~~~~~~~y~V~l~~i~vg~~-~~~~~~~~~iiDSG 224 (422)
++|+| +++||++|.+.. .|.|+||++|+.+ +.|.|++ ...+|.|.+++|.++++ .+......++||||
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~----~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtg 207 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV----SSGYWSVPLDSISIGGESVFSSSGQQAILDTG 207 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS----STTTTEEEEEEEEETTEEEEEEEEEEEEEETT
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCcc----cccccccccccccccccccccccceeeecccc
Confidence 99999 699999998863 7999999998864 5689986 25899999999999999 33334567999999
Q ss_pred ccccccCHHHHHHHHHHHHhhccccccccccccccccccccccccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEE
Q 014597 225 ASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFC 304 (422)
Q Consensus 225 Ts~~~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~C 304 (422)
|++++||++++++|.+++...... .+|..+|.....+|.|+|.|+ +.++.++++.|++...+.....|
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~~-~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTFG-GVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEET-TEEEEEEHHHHEEEESSTTSSEE
T ss_pred cccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEeeC-CEEEEecchHhccccccccccee
Confidence 999999999999999999765432 334444444457999999996 58999999988887665333478
Q ss_pred E-EEEe----CCCCceeEccceeeeeEEEEeCCCCEEEEeec
Q 014597 305 L-TVMS----TDGDYGIIGQNFMMGHRIVFDRENLKLAWSHS 341 (422)
Q Consensus 305 l-~i~~----~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~ 341 (422)
. +|.. ...+.+|||..|||++|+|||.|++|||||++
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 6 4555 23468999999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=4.2e-31 Score=233.00 Aligned_cols=157 Identities=33% Similarity=0.645 Sum_probs=125.9
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCC----CCCCCCCCC
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----SCKSLKDPC 76 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~----~C~~~~~~c 76 (422)
++.+|+||||+|++.|+||| ||+++|..+ ..+.|+|++|+||+.++|++++|.... .|...+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDt-gs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDT-GSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEET-T-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEEC-CCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 46899999999999999999 999999543 237899999999999999999997542 444445689
Q ss_pred CceeecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecCCCCCchhHHhhhcCC
Q 014597 77 PYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGL 156 (422)
Q Consensus 77 ~~~i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~Sl~~qL~~~g~ 156 (422)
.|.+.|+++ +.++|.+++|+|+++...... ....++.|||++.+.|.+. ..+||||||++++||+.||+++
T Consensus 70 ~y~~~y~~~-s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~~~-- 140 (164)
T PF14543_consen 70 PYSQSYGDG-SSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLASS-- 140 (164)
T ss_dssp EEEEEETTT-EEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHHHH--
T ss_pred cceeecCCC-ccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHHHh--
Confidence 999999996 899999999999999875322 3457899999999987665 5799999999999999999887
Q ss_pred CCCceEEeecC---CCceEEEECC
Q 014597 157 IQNSFSICFDE---NDSGSVFFGD 177 (422)
Q Consensus 157 i~~~FS~cl~~---~~~G~l~fG~ 177 (422)
..++|||||.+ +..|+|+||+
T Consensus 141 ~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp --SEEEEEB-S-SSSSEEEEEECS
T ss_pred cCCeEEEECCCCCCCCCEEEEeCc
Confidence 66999999988 3789999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=1.3e-25 Score=197.80 Aligned_cols=142 Identities=24% Similarity=0.483 Sum_probs=114.5
Q ss_pred ceEEeEeEEEEcceEeccC---------CCcEEEcccccccccCHHHHHHHHHHHHhhcccccc---ccccccccccccc
Q 014597 197 AYFVGVESYCIGNSCLTQS---------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI---SLQGNSWKYCYNA 264 (422)
Q Consensus 197 ~y~V~l~~i~vg~~~~~~~---------~~~~iiDSGTs~~~Lp~~~y~~l~~~~~~~~~~~~~---~~~~~~~~~C~~~ 264 (422)
+|.|+|++|+||++.+... ..++||||||++++||+++|++|+++|.+++..... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5999999999999998742 246999999999999999999999999999876532 2223567899999
Q ss_pred cc----cccccCceEEEEEcCCeEEEEeCceEEeecCCCccEEEEEEEeC---CCCceeEccceeeeeEEEEeCCCCEEE
Q 014597 265 SS----EEMLKVPDMRLIFSKNQSFVVRNHIFSFPENEGFTVFCLTVMST---DGDYGIIGQNFMMGHRIVFDRENLKLA 337 (422)
Q Consensus 265 ~~----~~~~~~P~i~~~f~gg~~~~l~~~~y~~~~~~~~~~~Cl~i~~~---~~~~~ILG~~fl~~~yvvfD~e~~rIG 337 (422)
+. .....+|+|+|+|.+|+.|+++++.|++...+ +.+|++|..+ +.+..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87 45678999999999999999999998888764 6999999998 456899999999999999999999999
Q ss_pred Eee
Q 014597 338 WSH 340 (422)
Q Consensus 338 fa~ 340 (422)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.86 E-value=2.1e-21 Score=159.52 Aligned_cols=106 Identities=28% Similarity=0.438 Sum_probs=85.5
Q ss_pred eeEeecCCCceEEEEEecCCCCeee--eecccCCccccCCCCCCC-CCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCce
Q 014597 3 GAICFGSHANAYNALLCLPVTTLLW--CLLVFGASIVQDRNLSEY-DPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYI 79 (422)
Q Consensus 3 ~~i~iGtP~Q~~~vi~DT~GSs~~W--c~~c~~~~~~~~~~~~~y-~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~ 79 (422)
++|.||||+|++.|+||| ||+++| |..|..+. ....+.| +|++|+|++... |.|.
T Consensus 1 ~~i~vGtP~q~~~~~~DT-GSs~~Wv~~~~c~~~~---~~~~~~~~~~~~sst~~~~~------------------~~~~ 58 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDT-GSSNLWVPSVDCQSLA---IYSHSSYDDPSASSTYSDNG------------------CTFS 58 (109)
T ss_pred CEEEeCCCCceEEEEEeC-CCCCEEEeCCCCCCcc---cccccccCCcCCCCCCCCCC------------------cEEE
Confidence 579999999999999999 999999 44454221 1123455 999999988753 8899
Q ss_pred eecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeec
Q 014597 80 ADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL 140 (422)
Q Consensus 80 i~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGL 140 (422)
+.|++| .+.|.+++|+|+|++. ...++.|||+....+.+......+|||||
T Consensus 59 ~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 59 ITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 999997 6789999999999875 35799999999988765444467999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.06 E-value=0.0025 Score=50.09 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=57.0
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCcee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIA 80 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i 80 (422)
++.++.|+ .++++++||| ||+.+|+..-... .... + .. ......+
T Consensus 3 ~~v~v~i~--~~~~~~llDT-Ga~~s~i~~~~~~------~l~~--~-------~~-----------------~~~~~~~ 47 (96)
T cd05483 3 FVVPVTIN--GQPVRFLLDT-GASTTVISEELAE------RLGL--P-------LT-----------------LGGKVTV 47 (96)
T ss_pred EEEEEEEC--CEEEEEEEEC-CCCcEEcCHHHHH------HcCC--C-------cc-----------------CCCcEEE
Confidence 46788899 6999999999 9999996321100 0000 0 00 1235677
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecC
Q 014597 81 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG 141 (422)
Q Consensus 81 ~Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg 141 (422)
.+++| .........+.+++++. ...++.+........ ..|||||+.
T Consensus 48 ~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d 93 (96)
T cd05483 48 QTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMD 93 (96)
T ss_pred EecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChH
Confidence 77776 56666677889999875 234555544443221 368999986
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.15 E-value=0.14 Score=42.62 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCceEEeEeEEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 195 YDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 195 ~~~y~V~l~~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
..+|.+ .+.|+|+.+. ++||||.+.+.+++++.+++
T Consensus 9 ~g~~~v---~~~InG~~~~-----flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNVR-----FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEEE-----EEEECCCCcEEcCHHHHHHc
Confidence 456655 4678888654 99999999999999987664
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.02 E-value=0.068 Score=44.59 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.9
Q ss_pred CceeEccceeeeeEEEEeCCCCEEEE
Q 014597 313 DYGIIGQNFMMGHRIVFDRENLKLAW 338 (422)
Q Consensus 313 ~~~ILG~~fl~~~yvvfD~e~~rIGf 338 (422)
-..|||..||+.+..+.|..+.+|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35799999999999999999998753
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.62 E-value=0.27 Score=41.70 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=25.0
Q ss_pred ceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 314 YGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 314 ~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
..|||..+|+.|..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 489999999999999999999999964
No 31
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.95 E-value=0.8 Score=37.07 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred CceeEccceeeeeEEEEeCCCCEE
Q 014597 313 DYGIIGQNFMMGHRIVFDRENLKL 336 (422)
Q Consensus 313 ~~~ILG~~fl~~~yvvfD~e~~rI 336 (422)
+..+||..||+.+-++.|..+.++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999887653
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.27 E-value=2.8 Score=31.85 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=17.0
Q ss_pred eEeecCCCceEEEEEecCCCCeeee
Q 014597 4 AICFGSHANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 4 ~i~iGtP~Q~~~vi~DT~GSs~~Wc 28 (422)
++.|+ .++++++||| |++.+..
T Consensus 2 ~v~vn--g~~~~~liDT-Ga~~~~i 23 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDT-GASISVI 23 (90)
T ss_pred EEEEC--CEEEEEEEcC-CCCcEEE
Confidence 35555 4799999999 9997664
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.55 E-value=0.68 Score=35.41 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=25.1
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+.|+|+.+. ++||||.+.+.+.+++++++
T Consensus 2 ~v~vng~~~~-----~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPVR-----FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEEE-----EEEcCCCCcEEECHHHHHHc
Confidence 3677887665 99999999999999988766
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.56 E-value=4.2 Score=33.60 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=49.9
Q ss_pred ceeEeecCCCceEEEEEecCCCCeeeeecccCCccccCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCCCCCCCCCceee
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLWCLLVFGASIVQDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIAD 81 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~Wc~~c~~~~~~~~~~~~~y~p~~SsT~~~~~C~~~~C~~~~~C~~~~~~c~~~i~ 81 (422)
+.++.|. .+++.++||| |++.+-...-... .. ..++.. . .-...+.
T Consensus 13 ~v~~~In--G~~~~flVDT-GAs~t~is~~~A~------~L-gl~~~~------~------------------~~~~~~~ 58 (121)
T TIGR02281 13 YATGRVN--GRNVRFLVDT-GATSVALNEEDAQ------RL-GLDLNR------L------------------GYTVTVS 58 (121)
T ss_pred EEEEEEC--CEEEEEEEEC-CCCcEEcCHHHHH------Hc-CCCccc------C------------------CceEEEE
Confidence 4455664 5799999999 9998864211000 00 012111 0 1123333
Q ss_pred cCCCCceEEEEEEEEEEEeccCCCCCCCCccccceEEeceeccCCCCCCCCCCCeEeecC
Q 014597 82 YSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG 141 (422)
Q Consensus 82 Y~dG~s~~~G~l~~D~l~lg~~~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg 141 (422)
=+.| ......+.-|.|.+|+. ...|+.+.+.... .+ .+|+||+.
T Consensus 59 ta~G-~~~~~~~~l~~l~iG~~--------~~~nv~~~v~~~~--~~-----~~~LLGm~ 102 (121)
T TIGR02281 59 TANG-QIKAARVTLDRVAIGGI--------VVNDVDAMVAEGG--AL-----SESLLGMS 102 (121)
T ss_pred eCCC-cEEEEEEEeCEEEECCE--------EEeCcEEEEeCCC--cC-----CceEcCHH
Confidence 3445 44455668899999986 3456666555422 11 37999986
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=84.44 E-value=1.3 Score=34.45 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=26.2
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+.|+|+.+. +.||||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4678888876 99999999999999998765
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.31 E-value=1.6 Score=32.52 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=25.8
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+.|+++.+. +++|||.+-.+++.++.+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 4678887776 99999999999999988776
No 37
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=81.73 E-value=9.2 Score=31.63 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=19.4
Q ss_pred ceeEeecCCCceEEEEEecCCCCeeee
Q 014597 2 LGAICFGSHANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 2 ~~~i~iGtP~Q~~~vi~DT~GSs~~Wc 28 (422)
+.++.|+ .+++.++||| |++.+++
T Consensus 18 ~v~~~In--g~~~~~LvDT-GAs~s~I 41 (124)
T cd05479 18 YINVEIN--GVPVKAFVDS-GAQMTIM 41 (124)
T ss_pred EEEEEEC--CEEEEEEEeC-CCceEEe
Confidence 4566676 5789999999 9999985
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=81.27 E-value=2.4 Score=32.69 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=24.6
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+.||++.+. ++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~~-----~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-----FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-----EEEECCCCcEEcCHHHHHHc
Confidence 5677877665 99999999999999876654
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=78.43 E-value=2.3 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.8
Q ss_pred EEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 205 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 205 i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
+.|||+.+. +++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567888766 99999999999999988765
No 40
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=77.63 E-value=3.1 Score=37.57 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.1
Q ss_pred CceeEccceeeeeEEEEeCCCCEEEEee
Q 014597 313 DYGIIGQNFMMGHRIVFDRENLKLAWSH 340 (422)
Q Consensus 313 ~~~ILG~~fl~~~yvvfD~e~~rIGfa~ 340 (422)
-..|||.+|+|.|+=-.+.+ .+|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 35899999999888776665 4677765
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=70.22 E-value=3.5 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.3
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 235 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y 235 (422)
.|.++++.+. ++||||+..++++++.+
T Consensus 9 ~v~i~g~~i~-----~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-----ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-----EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-----EEEecCCCcceeccccc
Confidence 5677888776 99999999999997643
No 42
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=69.91 E-value=18 Score=28.22 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=16.9
Q ss_pred CCCcEEEcccccccccCHHHH
Q 014597 215 SGFQALVDSGASFTFLPTEIY 235 (422)
Q Consensus 215 ~~~~~iiDSGTs~~~Lp~~~y 235 (422)
+....+||||.....+|....
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 345689999999999997653
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=69.37 E-value=5.8 Score=30.69 Aligned_cols=25 Identities=4% Similarity=-0.117 Sum_probs=20.5
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc 28 (422)
++.++.|+ .+++.+++|| ||+..++
T Consensus 1 ~~~~~~In--g~~i~~lvDT-GA~~svi 25 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDT-GSAITVI 25 (91)
T ss_pred CEEEEEEC--CEEEEEEEcC-CcceEEe
Confidence 35667776 5789999999 9999996
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=67.97 E-value=10 Score=34.24 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCCceEEeEeEEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 194 KYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 194 ~~~~y~V~l~~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
..++|.+ ...|||+.+. .+||||.|.+.|+++...++
T Consensus 102 ~~GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 3577766 4689999887 99999999999998876554
No 45
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=65.02 E-value=6.3 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=23.5
Q ss_pred EEEcc-eEeccCCCcEEEcccccccccCHHHHHHHH
Q 014597 205 YCIGN-SCLTQSGFQALVDSGASFTFLPTEIYAEVV 239 (422)
Q Consensus 205 i~vg~-~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l~ 239 (422)
+.+++ +.+ .+.+|||.+...||...|..+.
T Consensus 3 ~~i~g~~~v-----~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGKQSV-----KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCceeE-----EEEEecCCEEEeccHHHHhhhc
Confidence 55666 433 4899999999999999887763
No 46
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=62.37 E-value=42 Score=32.98 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=61.8
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH--HHHHHhhccccccccccccccccccccccccccCceEEEEEcC
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV--VVKFDKLVSSKRISLQGNSWKYCYNASSEEMLKVPDMRLIFSK 281 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l--~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 281 (422)
++.++|+.++ |.||||+-.+.+...-.++. ...+++.. ..+. ..+| +.++-|
T Consensus 239 N~~ing~~VK-----AfVDsGaq~timS~~Caer~gL~rlid~r~-----~g~a--------------~gvg--~~ki~g 292 (380)
T KOG0012|consen 239 NCEINGVPVK-----AFVDSGAQTTIMSAACAERCGLNRLIDKRF-----QGEA--------------RGVG--TEKILG 292 (380)
T ss_pred EEEECCEEEE-----EEEcccchhhhhhHHHHHHhChHHHhhhhh-----hccc--------------cCCC--cccccc
Confidence 5678888887 99999999888877766543 12222211 1110 1122 112222
Q ss_pred CeEEEEeCceEEeecCCCccEEE-EEEEeCCCCceeEccceeeeeEEEEeCCCCEEEEeeccc
Q 014597 282 NQSFVVRNHIFSFPENEGFTVFC-LTVMSTDGDYGIIGQNFMMGHRIVFDRENLKLAWSHSKC 343 (422)
Q Consensus 282 g~~~~l~~~~y~~~~~~~~~~~C-l~i~~~~~~~~ILG~~fl~~~yvvfD~e~~rIGfa~~~c 343 (422)
-. .--...+.+ ...-| +.++...+-...||-..||.|--.-|++++++-|....-
T Consensus 293 ~I----h~~~lki~~---~~l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 293 RI----HQAQLKIED---LYLPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred ee----EEEEEEecc---EeeccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 11 000111111 12335 345544434588999999999999999999999976544
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=61.92 E-value=64 Score=28.21 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.5
Q ss_pred cEEEcccccccccCHHHHHHH
Q 014597 218 QALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 218 ~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.++||||+...++..++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 499999999998888876655
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=61.66 E-value=8.6 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.3
Q ss_pred EEEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 204 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 204 ~i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+.++|+.+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 5678999887 99999999999999988764
No 49
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=51.06 E-value=1.3e+02 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=23.6
Q ss_pred EEEcceEeccCCCcEEEcccccccccCHHHHHHH
Q 014597 205 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 205 i~vg~~~~~~~~~~~iiDSGTs~~~Lp~~~y~~l 238 (422)
..++|..+. |.||||+-.+.+...-.++.
T Consensus 3 Ck~nG~~vk-----AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 3 CQCAGKELR-----ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eeECCEEEE-----EEEecCCchhhcCHHHHHHc
Confidence 456777776 99999999999998877654
No 50
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=50.09 E-value=17 Score=28.17 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=18.8
Q ss_pred eEeecCCCceEEEEEecCCCCeeeee
Q 014597 4 AICFGSHANAYNALLCLPVTTLLWCL 29 (422)
Q Consensus 4 ~i~iGtP~Q~~~vi~DT~GSs~~Wc~ 29 (422)
++.|+ .|.+.+++|| |+.++-..
T Consensus 2 ~~~i~--g~~~~~llDT-GAd~Tvi~ 24 (87)
T cd05482 2 TLYIN--GKLFEGLLDT-GADVSIIA 24 (87)
T ss_pred EEEEC--CEEEEEEEcc-CCCCeEEc
Confidence 35566 7999999999 99998863
No 51
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=48.08 E-value=19 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=20.3
Q ss_pred CceeEeecCCCceEEEEEecCCCCeeee
Q 014597 1 MLGAICFGSHANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 1 ~~~~i~iGtP~Q~~~vi~DT~GSs~~Wc 28 (422)
|+.++.||- +++..++|| ||+...+
T Consensus 9 ~~v~~~I~g--~~~~alvDt-Gat~~fi 33 (72)
T PF13975_consen 9 MYVPVSIGG--VQVKALVDT-GATHNFI 33 (72)
T ss_pred EEEEEEECC--EEEEEEEeC-CCcceec
Confidence 456778886 889999999 9998774
No 52
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=44.43 E-value=40 Score=33.36 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=17.7
Q ss_pred eecCCCCceEEEEEEEEEEEeccCC
Q 014597 80 ADYSTEDTSSSGYLVDDILHLASFS 104 (422)
Q Consensus 80 i~Y~dG~s~~~G~l~~D~l~lg~~~ 104 (422)
..|++| ..=|-+.+-.|+|+++.
T Consensus 82 ~~F~sg--ytWGsVr~AdV~igge~ 104 (370)
T PF11925_consen 82 AQFASG--YTWGSVRTADVTIGGET 104 (370)
T ss_pred hhccCc--ccccceEEEEEEEcCee
Confidence 346665 66788899999999974
No 53
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=42.12 E-value=21 Score=27.23 Aligned_cols=17 Identities=12% Similarity=-0.263 Sum_probs=15.0
Q ss_pred CceEEEEEecCCCCeeee
Q 014597 11 ANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 11 ~Q~~~vi~DT~GSs~~Wc 28 (422)
.|++++++|| |++.+-.
T Consensus 7 G~~~~fLvDT-GA~~tii 23 (86)
T cd06095 7 GVPIVFLVDT-GATHSVL 23 (86)
T ss_pred CEEEEEEEEC-CCCeEEE
Confidence 5789999999 9998875
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.36 E-value=21 Score=29.51 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=17.9
Q ss_pred EEEccccc-ccccCHHHHHHH
Q 014597 219 ALVDSGAS-FTFLPTEIYAEV 238 (422)
Q Consensus 219 ~iiDSGTs-~~~Lp~~~y~~l 238 (422)
.+||||-+ ++.+|..+++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998775
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=33.34 E-value=46 Score=29.07 Aligned_cols=25 Identities=4% Similarity=0.044 Sum_probs=21.3
Q ss_pred eeEeecCCCceEEEEEecCCCCeeee
Q 014597 3 GAICFGSHANAYNALLCLPVTTLLWC 28 (422)
Q Consensus 3 ~~i~iGtP~Q~~~vi~DT~GSs~~Wc 28 (422)
+++.++.-..+.+++||| ||.....
T Consensus 35 ~~v~l~~~~t~i~vLfDS-GSPTSfI 59 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDS-GSPTSFI 59 (177)
T ss_pred EEEEEeecCcEEEEEEeC-CCcccee
Confidence 467788888999999999 9998774
No 56
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=30.02 E-value=79 Score=22.32 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=17.6
Q ss_pred cEEEcccccccccCHHHHHHH
Q 014597 218 QALVDSGASFTFLPTEIYAEV 238 (422)
Q Consensus 218 ~~iiDSGTs~~~Lp~~~y~~l 238 (422)
.+++|+|.+...+..+.+...
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 499999999999998877543
Done!