Query 014598
Match_columns 422
No_of_seqs 256 out of 1705
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 5E-30 1.1E-34 225.2 15.8 137 2-250 1-138 (138)
2 KOG1717 Dual specificity phosp 100.0 2.2E-30 4.7E-35 248.5 11.9 142 1-252 171-313 (343)
3 KOG1716 Dual specificity phosp 100.0 8.6E-29 1.9E-33 244.6 15.5 149 2-259 75-224 (285)
4 KOG1718 Dual specificity phosp 100.0 1.1E-28 2.4E-33 223.3 13.6 140 3-254 18-158 (198)
5 cd00127 DSPc Dual specificity 99.9 1.1E-26 2.4E-31 202.8 15.1 137 2-248 2-139 (139)
6 PF00782 DSPc: Dual specificit 99.9 5.5E-27 1.2E-31 204.1 12.3 131 9-249 1-132 (133)
7 PRK12361 hypothetical protein; 99.9 1.1E-22 2.3E-27 217.3 16.0 141 2-251 95-237 (547)
8 PTZ00242 protein tyrosine phos 99.7 2.3E-17 5E-22 151.4 14.6 91 101-249 61-156 (166)
9 PTZ00393 protein tyrosine phos 99.7 4.2E-16 9.1E-21 150.0 14.9 94 100-252 136-230 (241)
10 KOG1719 Dual specificity phosp 99.7 2.3E-16 5E-21 141.7 11.0 140 4-249 27-168 (183)
11 COG2453 CDC14 Predicted protei 99.5 3.8E-14 8.2E-19 131.5 10.9 66 99-165 70-136 (180)
12 KOG1720 Protein tyrosine phosp 99.3 3.6E-11 7.8E-16 113.2 13.8 67 98-165 112-178 (225)
13 TIGR01244 conserved hypothetic 99.2 1.5E-10 3.2E-15 102.9 10.3 128 2-179 2-129 (135)
14 PF05706 CDKN3: Cyclin-depende 99.1 2.2E-10 4.7E-15 105.1 9.2 105 17-167 61-167 (168)
15 PF03162 Y_phosphatase2: Tyros 99.1 2.3E-10 5.1E-15 105.0 7.5 118 3-172 8-128 (164)
16 KOG2836 Protein tyrosine phosp 98.9 7.9E-09 1.7E-13 91.5 11.0 74 101-176 62-138 (173)
17 smart00404 PTPc_motif Protein 98.8 3.1E-08 6.6E-13 81.3 10.9 56 105-160 6-65 (105)
18 smart00012 PTPc_DSPc Protein t 98.8 3.1E-08 6.6E-13 81.3 10.9 56 105-160 6-65 (105)
19 PF04273 DUF442: Putative phos 98.8 1E-08 2.3E-13 88.4 7.7 102 3-154 3-105 (110)
20 PLN02727 NAD kinase 98.5 3.9E-07 8.4E-12 101.6 10.8 108 8-162 262-369 (986)
21 cd00047 PTPc Protein tyrosine 98.5 1E-06 2.2E-11 83.9 10.9 62 98-159 126-191 (231)
22 smart00194 PTPc Protein tyrosi 98.4 2.3E-06 5.1E-11 82.9 10.8 60 100-159 156-218 (258)
23 PF13350 Y_phosphatase3: Tyros 98.3 2.5E-06 5.3E-11 77.7 8.6 31 135-166 125-155 (164)
24 COG3453 Uncharacterized protei 98.2 6.9E-06 1.5E-10 71.6 8.9 119 3-173 4-124 (130)
25 COG5350 Predicted protein tyro 98.1 7.4E-06 1.6E-10 74.3 7.6 70 118-243 77-147 (172)
26 PF14566 PTPlike_phytase: Inos 98.0 1.1E-05 2.3E-10 73.0 5.9 60 98-158 89-148 (149)
27 PRK15375 pathogenicity island 97.9 5.5E-05 1.2E-09 80.2 10.9 65 101-165 422-498 (535)
28 PF04179 Init_tRNA_PT: Initiat 97.6 0.00044 9.5E-09 73.1 12.0 105 103-247 340-449 (451)
29 PF00102 Y_phosphatase: Protei 97.6 0.00027 5.8E-09 66.3 9.3 56 101-159 134-195 (235)
30 PHA02747 protein tyrosine phos 97.5 0.00061 1.3E-08 68.7 11.0 25 135-159 230-254 (312)
31 PHA02746 protein tyrosine phos 97.4 0.00093 2E-08 67.8 10.9 25 135-159 248-272 (323)
32 PHA02742 protein tyrosine phos 97.4 0.00048 1E-08 69.2 8.1 44 135-178 230-278 (303)
33 PHA02740 protein tyrosine phos 97.4 0.00062 1.3E-08 68.4 8.2 47 135-181 222-273 (298)
34 KOG2283 Clathrin coat dissocia 97.3 0.00029 6.2E-09 74.2 5.2 73 105-178 76-152 (434)
35 PHA02738 hypothetical protein; 97.3 0.00093 2E-08 67.7 8.3 47 135-181 228-279 (320)
36 KOG1572 Predicted protein tyro 97.1 0.0033 7.1E-08 61.0 9.7 109 3-165 61-178 (249)
37 COG2365 Protein tyrosine/serin 97.1 0.0015 3.2E-08 64.0 7.5 60 123-182 123-184 (249)
38 COG5599 PTP2 Protein tyrosine 97.0 0.0006 1.3E-08 67.1 4.2 62 97-159 180-243 (302)
39 KOG0792 Protein tyrosine phosp 96.7 0.0049 1.1E-07 70.0 8.8 59 101-159 1027-1088(1144)
40 KOG2386 mRNA capping enzyme, g 96.3 0.011 2.3E-07 61.5 7.6 95 100-250 85-184 (393)
41 KOG0790 Protein tyrosine phosp 96.1 0.0065 1.4E-07 63.6 4.7 49 133-181 450-506 (600)
42 KOG0789 Protein tyrosine phosp 95.4 0.043 9.3E-07 56.5 7.3 24 134-157 299-322 (415)
43 KOG0791 Protein tyrosine phosp 94.7 0.1 2.2E-06 53.7 7.7 26 134-159 287-312 (374)
44 PF03226 Yippee-Mis18: Yippee 91.3 0.12 2.7E-06 43.0 1.9 19 311-329 2-20 (96)
45 KOG4228 Protein tyrosine phosp 91.0 0.35 7.6E-06 55.9 5.7 76 116-194 1000-1077(1087)
46 KOG4228 Protein tyrosine phosp 88.2 1.5 3.2E-05 51.0 7.8 74 102-178 695-779 (1087)
47 PF14671 DSPn: Dual specificit 85.1 2 4.4E-05 38.9 5.6 65 110-175 39-111 (141)
48 KOG4471 Phosphatidylinositol 3 79.1 3.5 7.5E-05 45.2 5.5 29 128-156 366-396 (717)
49 cd01518 RHOD_YceA Member of th 78.8 9 0.00019 31.3 6.9 27 134-163 61-87 (101)
50 PF01641 SelR: SelR domain; I 74.3 2.8 6E-05 37.2 2.8 65 308-397 34-103 (124)
51 PRK05508 methionine sulfoxide 71.8 4.2 9.2E-05 35.8 3.3 21 308-328 30-50 (119)
52 PRK00222 methionine sulfoxide 69.4 4.7 0.0001 36.6 3.1 19 308-326 40-58 (142)
53 PF09814 HECT_2: HECT-like Ubi 68.3 6.3 0.00014 40.0 4.3 82 310-392 105-205 (354)
54 KOG0793 Protein tyrosine phosp 67.4 16 0.00035 41.0 7.2 17 136-152 929-945 (1004)
55 PF06602 Myotub-related: Myotu 65.9 9.6 0.00021 39.4 5.0 21 133-153 229-250 (353)
56 smart00714 LITAF Possible memb 60.6 4 8.6E-05 31.8 0.8 19 376-394 48-66 (67)
57 TIGR00357 methionine-R-sulfoxi 59.9 8.7 0.00019 34.6 3.0 21 308-328 37-57 (134)
58 PF13453 zf-TFIIB: Transcripti 55.2 7.7 0.00017 27.3 1.5 25 382-406 1-30 (41)
59 PF11648 RIG-I_C-RD: C-termina 54.4 2.8 6.1E-05 36.9 -1.0 26 377-402 57-83 (123)
60 PF10571 UPF0547: Uncharacteri 54.0 7.8 0.00017 25.1 1.2 21 382-405 2-23 (26)
61 PF10601 zf-LITAF-like: LITAF- 53.5 6.4 0.00014 31.1 1.0 18 377-394 55-72 (73)
62 TIGR02300 FYDLN_acid conserved 52.7 8.1 0.00018 34.4 1.5 35 377-411 6-41 (129)
63 cd01533 4RHOD_Repeat_2 Member 49.8 28 0.00061 28.8 4.4 26 135-163 67-92 (109)
64 KOG1089 Myotubularin-related p 49.6 25 0.00055 38.7 5.0 28 126-153 334-363 (573)
65 PF09538 FYDLN_acid: Protein o 49.1 9.7 0.00021 32.9 1.4 33 377-409 6-39 (108)
66 PF12760 Zn_Tnp_IS1595: Transp 47.0 14 0.00031 26.6 1.8 12 377-389 16-27 (46)
67 PF10122 Mu-like_Com: Mu-like 46.5 5.8 0.00012 29.9 -0.3 17 311-327 4-20 (51)
68 PF13408 Zn_ribbon_recom: Reco 45.4 12 0.00026 27.4 1.3 21 377-397 2-22 (58)
69 PF12773 DZR: Double zinc ribb 44.2 12 0.00025 27.2 1.0 32 378-409 10-42 (50)
70 PF08996 zf-DNA_Pol: DNA Polym 40.4 10 0.00022 35.6 0.3 14 395-408 43-57 (188)
71 PRK05550 bifunctional methioni 40.3 25 0.00053 35.5 2.9 22 308-329 33-54 (283)
72 PF06750 DiS_P_DiS: Bacterial 40.0 19 0.00042 30.1 1.8 31 378-408 31-70 (92)
73 PF11781 RRN7: RNA polymerase 39.9 15 0.00033 25.5 1.0 23 381-405 9-34 (36)
74 COG4738 Predicted transcriptio 39.4 35 0.00075 30.1 3.3 24 142-165 22-45 (124)
75 PF13717 zinc_ribbon_4: zinc-r 38.6 17 0.00037 25.1 1.1 26 380-405 2-34 (36)
76 cd01523 RHOD_Lact_B Member of 37.7 46 0.001 26.9 3.8 27 134-163 61-87 (100)
77 PRK01415 hypothetical protein; 37.6 1.1E+02 0.0023 30.3 6.9 28 133-163 170-197 (247)
78 PF13248 zf-ribbon_3: zinc-rib 36.0 13 0.00029 23.7 0.2 13 378-390 14-26 (26)
79 PF00581 Rhodanese: Rhodanese- 35.8 1.4E+02 0.0029 24.0 6.3 58 105-163 34-98 (113)
80 PF07282 OrfB_Zn_ribbon: Putat 35.5 19 0.0004 27.8 1.0 25 382-406 30-56 (69)
81 cd01520 RHOD_YbbB Member of th 34.4 86 0.0019 26.9 5.1 27 135-163 87-113 (128)
82 PF03966 Trm112p: Trm112p-like 34.4 20 0.00043 28.0 1.0 14 374-387 47-60 (68)
83 PRK14018 trifunctional thiored 33.6 36 0.00079 37.2 3.2 20 307-326 414-433 (521)
84 PF03604 DNA_RNApol_7kD: DNA d 33.5 21 0.00045 24.3 0.8 23 383-406 3-27 (32)
85 COG0607 PspE Rhodanese-related 33.5 44 0.00095 27.1 3.0 26 134-162 61-86 (110)
86 PLN02160 thiosulfate sulfurtra 33.3 62 0.0013 28.5 4.1 26 135-163 82-107 (136)
87 cd01532 4RHOD_Repeat_1 Member 33.1 62 0.0013 26.0 3.8 29 134-163 50-78 (92)
88 PF03119 DNA_ligase_ZBD: NAD-d 33.0 17 0.00037 23.8 0.4 10 382-391 1-10 (28)
89 PRK00420 hypothetical protein; 32.3 24 0.00052 30.8 1.2 25 381-406 24-50 (112)
90 smart00400 ZnF_CHCC zinc finge 32.2 40 0.00087 25.0 2.3 32 138-171 23-54 (55)
91 PF13240 zinc_ribbon_2: zinc-r 31.8 21 0.00045 22.3 0.6 21 382-405 1-22 (23)
92 smart00531 TFIIE Transcription 31.5 23 0.00049 31.9 1.0 16 378-393 121-136 (147)
93 TIGR00373 conserved hypothetic 31.4 19 0.00042 32.9 0.6 24 382-406 111-138 (158)
94 TIGR02098 MJ0042_CXXC MJ0042 f 31.3 30 0.00065 23.6 1.4 13 378-390 23-35 (38)
95 cd01528 RHOD_2 Member of the R 30.9 1.1E+02 0.0023 24.8 4.9 26 135-163 59-84 (101)
96 PRK03681 hypA hydrogenase nick 29.7 40 0.00087 29.2 2.2 29 377-405 67-96 (114)
97 COG3809 Uncharacterized protei 29.1 29 0.00062 28.6 1.1 23 381-403 2-28 (88)
98 PF13719 zinc_ribbon_5: zinc-r 29.0 31 0.00068 23.9 1.2 10 380-389 2-11 (37)
99 PRK12380 hydrogenase nickel in 27.7 47 0.001 28.7 2.3 28 377-405 67-95 (113)
100 COG2093 DNA-directed RNA polym 26.8 28 0.00061 27.4 0.7 17 382-398 20-36 (64)
101 TIGR03865 PQQ_CXXCW PQQ-depend 26.8 64 0.0014 29.4 3.1 27 135-163 117-143 (162)
102 KOG4784 Uncharacterized conser 26.0 52 0.0011 34.0 2.6 88 307-397 99-201 (348)
103 PF00096 zf-C2H2: Zinc finger, 25.6 15 0.00033 21.9 -0.8 19 312-330 1-19 (23)
104 cd01443 Cdc25_Acr2p Cdc25 enzy 25.6 1.2E+02 0.0026 25.2 4.4 17 136-152 68-84 (113)
105 COG5629 Predicted metal-bindin 25.5 35 0.00077 34.2 1.3 36 377-412 166-211 (321)
106 KOG3399 Predicted Yippee-type 25.5 30 0.00065 30.7 0.7 24 309-332 13-36 (122)
107 PF09297 zf-NADH-PPase: NADH p 25.4 24 0.00052 23.4 0.1 23 382-404 5-29 (32)
108 TIGR00753 undec_PP_bacA undeca 25.4 47 0.001 32.9 2.1 31 143-175 160-190 (255)
109 PRK12554 undecaprenyl pyrophos 25.2 47 0.001 33.3 2.1 31 143-175 166-196 (276)
110 PHA02540 61 DNA primase; Provi 25.1 80 0.0017 32.7 3.8 38 135-175 52-90 (337)
111 COG0229 Conserved domain frequ 25.1 61 0.0013 29.3 2.6 19 308-326 39-57 (140)
112 PRK06266 transcription initiat 25.0 29 0.00064 32.4 0.6 12 240-251 53-64 (178)
113 PF13344 Hydrolase_6: Haloacid 25.0 3.8E+02 0.0083 22.2 7.3 44 121-165 16-59 (101)
114 PF02673 BacA: Bacitracin resi 24.9 48 0.001 32.9 2.1 32 142-175 159-190 (259)
115 PRK14714 DNA polymerase II lar 24.7 50 0.0011 39.7 2.4 25 379-408 666-691 (1337)
116 TIGR00100 hypA hydrogenase nic 23.3 52 0.0011 28.5 1.8 28 377-405 67-95 (115)
117 cd05567 PTS_IIB_mannitol PTS_I 23.2 79 0.0017 25.5 2.7 23 136-159 2-24 (87)
118 PRK00281 undecaprenyl pyrophos 23.1 55 0.0012 32.7 2.1 31 143-175 164-194 (268)
119 PRK08351 DNA-directed RNA poly 22.8 41 0.00089 26.3 0.9 17 382-398 17-33 (61)
120 cd01534 4RHOD_Repeat_3 Member 22.3 94 0.002 24.9 3.1 27 134-163 56-82 (95)
121 PRK00398 rpoP DNA-directed RNA 22.3 45 0.00098 23.9 1.0 12 380-391 21-32 (46)
122 COG4416 Com Mu-like prophage p 22.3 17 0.00037 27.8 -1.2 16 311-326 4-19 (60)
123 TIGR00354 polC DNA polymerase, 22.2 47 0.001 38.8 1.6 32 378-410 1010-1042(1095)
124 COG0279 GmhA Phosphoheptose is 22.2 1.2E+02 0.0026 28.6 3.9 43 115-160 21-67 (176)
125 PRK06835 DNA replication prote 22.1 44 0.00096 34.2 1.3 24 378-404 96-119 (329)
126 smart00659 RPOLCX RNA polymera 22.0 46 0.001 24.1 1.0 12 379-390 18-29 (44)
127 cd01448 TST_Repeat_1 Thiosulfa 21.9 88 0.0019 26.2 2.9 26 136-163 81-106 (122)
128 PF07295 DUF1451: Protein of u 21.8 58 0.0013 29.6 1.8 26 378-404 110-138 (146)
129 cd04445 DEP_PLEK1 DEP (Disheve 21.7 78 0.0017 27.1 2.4 32 132-168 22-54 (99)
130 COG2888 Predicted Zn-ribbon RN 21.3 24 0.00053 27.5 -0.6 12 309-320 36-47 (61)
131 PF09082 DUF1922: Domain of un 21.3 45 0.00097 26.7 0.8 20 311-331 3-22 (68)
132 cd01526 RHOD_ThiF Member of th 20.9 1.1E+02 0.0024 25.9 3.3 26 134-162 72-97 (122)
133 COG1675 TFA1 Transcription ini 20.6 45 0.00097 31.4 0.8 11 311-321 61-71 (176)
134 cd01444 GlpE_ST GlpE sulfurtra 20.4 2E+02 0.0042 22.7 4.5 26 135-163 57-82 (96)
135 PF04343 DUF488: Protein of un 20.4 3.5E+02 0.0077 23.1 6.4 17 20-36 6-22 (122)
136 PF01807 zf-CHC2: CHC2 zinc fi 20.3 72 0.0016 26.6 2.0 36 137-174 53-88 (97)
137 PRK00162 glpE thiosulfate sulf 20.0 1.9E+02 0.0042 23.6 4.6 28 133-163 57-84 (108)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=5e-30 Score=225.17 Aligned_cols=137 Identities=34% Similarity=0.531 Sum_probs=123.6
Q ss_pred CccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 014598 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (422)
Q Consensus 2 pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
|++|+|+||+|+.+++.+.+.|++.||++||||+.+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~------------------------------------------ 38 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP------------------------------------------ 38 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC------------------------------------------
Confidence 89999999999999999999999999999999986210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHc
Q 014598 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
. ....++.|+++|+.|....++.+.|+.+++||+..+.+| +|||||.+|+|||+++++||||+..
T Consensus 39 -----~---------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 39 -----N---------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred -----C---------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 001247789999999878899999999999999999776 7999999999999999999999999
Q ss_pred CCChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHH
Q 014598 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (422)
Q Consensus 161 ~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf 240 (422)
+++++ +|+.+|+..||.+.||.+|
T Consensus 105 ~~~~~--------------------------------------------------------~A~~~v~~~R~~~~p~~~~ 128 (138)
T smart00195 105 NLSLN--------------------------------------------------------DAYDFVKDRRPIISPNFGF 128 (138)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHHCCccCCCHhH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHHHc
Q 014598 241 LEQLKMFEEM 250 (422)
Q Consensus 241 ~~qL~~~~~~ 250 (422)
++||..||++
T Consensus 129 ~~qL~~~e~~ 138 (138)
T smart00195 129 LRQLIEYERK 138 (138)
T ss_pred HHHHHHHhhC
Confidence 9999999963
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=2.2e-30 Score=248.45 Aligned_cols=142 Identities=30% Similarity=0.500 Sum_probs=127.8
Q ss_pred CCccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCC
Q 014598 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (422)
Q Consensus 1 ~pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 80 (422)
.|.+|+|+||||+..++.+.+.|++.||+|||||+.+. |
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--------------p--------------------------- 209 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--------------P--------------------------- 209 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC--------------c---------------------------
Confidence 48899999999999999999999999999999998621 1
Q ss_pred CCCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHH
Q 014598 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
..+ ...-++.|+.|||+|+-+.++...||+++.|||+++.+. +|||||.||||||+||++||||.+
T Consensus 210 ------n~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 210 ------NNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred ------chh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 100 122357799999999999999999999999999999766 999999999999999999999999
Q ss_pred cCCChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHH
Q 014598 160 EQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDG 239 (422)
Q Consensus 160 ~~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~g 239 (422)
..+++. +|+.+|+.++.+|.||.+
T Consensus 277 l~lsln--------------------------------------------------------dAyd~Vk~kksnisPNFn 300 (343)
T KOG1717|consen 277 LNLSLN--------------------------------------------------------DAYDFVKHKKSNISPNFN 300 (343)
T ss_pred hccchh--------------------------------------------------------hHHHHHHHhccCCCCCcc
Confidence 999999 999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 014598 240 FLEQLKMFEEMGF 252 (422)
Q Consensus 240 f~~qL~~~~~~~~ 252 (422)
||.||..||+|..
T Consensus 301 FMgQLldfertlg 313 (343)
T KOG1717|consen 301 FMGQLLDFERTLG 313 (343)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999998743
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=8.6e-29 Score=244.60 Aligned_cols=149 Identities=35% Similarity=0.480 Sum_probs=130.7
Q ss_pred CccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 014598 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (422)
Q Consensus 2 pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
+.+|.|+||+|+...+.+...|+++|||||||+......+
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~---------------------------------------- 114 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNP---------------------------------------- 114 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCcc----------------------------------------
Confidence 4679999999999999999999999999999998731100
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHc
Q 014598 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
. +. ....+.|+++|+.|.+.++|+.||+.+++||+.+..+| +|||||.+|+|||+|+|+||||+.+
T Consensus 115 -----~-------~~-~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 115 -----R-------FL-KEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred -----c-------cc-cccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 0 00 11157789999999999999999999999999999776 7999999999999999999999999
Q ss_pred CCChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHH
Q 014598 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (422)
Q Consensus 161 ~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf 240 (422)
+++++ +|+.+|+++||.+.||.||
T Consensus 182 ~~~l~--------------------------------------------------------~A~~~vk~~R~~i~PN~gf 205 (285)
T KOG1716|consen 182 GLSLE--------------------------------------------------------DAYELVKSRRPIISPNFGF 205 (285)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHhCCccCCCHHH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCh
Q 014598 241 LEQLKMFEEMGFKVNRGSP 259 (422)
Q Consensus 241 ~~qL~~~~~~~~~~~~~~~ 259 (422)
+.||..|++++........
T Consensus 206 ~~QL~~~e~~l~~~~~~~~ 224 (285)
T KOG1716|consen 206 LRQLLEFEKRLSKKSPSQG 224 (285)
T ss_pred HHHHHHHHHhhccCCcccc
Confidence 9999999998877655443
No 4
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.1e-28 Score=223.26 Aligned_cols=140 Identities=32% Similarity=0.414 Sum_probs=124.7
Q ss_pred ccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 3 skI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
++|++.|||++--.|.+...|++.|||+|||++.+. |
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~--------------p----------------------------- 54 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV--------------P----------------------------- 54 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------C-----------------------------
Confidence 689999999988889999999999999999998631 1
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHh-cCceEEEecCCCCchHHHHHHHHHHHcC
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK-EGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~-~g~VLVHC~aGvsRS~tvv~AYLm~~~~ 161 (422)
.... ..++|+.+|+.|.....|.++|+.+.+.|+.... .|++||||.|||||||+++.||||+..+
T Consensus 55 ----n~~l---------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 55 ----NTSL---------PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ----CccC---------CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 0000 1467899999999999999999999999999985 5589999999999999999999999999
Q ss_pred CChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHH
Q 014598 162 LSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFL 241 (422)
Q Consensus 162 ~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~ 241 (422)
+++. ||+.+++.+||.|.||.||+
T Consensus 122 msLr--------------------------------------------------------eAy~~vKa~RpiIRPN~GFw 145 (198)
T KOG1718|consen 122 MSLR--------------------------------------------------------EAYHWVKARRPIIRPNVGFW 145 (198)
T ss_pred chHH--------------------------------------------------------HHHHHHHhhCceeCCCccHH
Confidence 9999 99999999999999999999
Q ss_pred HHHHHHHHcCCCC
Q 014598 242 EQLKMFEEMGFKV 254 (422)
Q Consensus 242 ~qL~~~~~~~~~~ 254 (422)
+||..||+..+..
T Consensus 146 ~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 146 RQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999865543
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.94 E-value=1.1e-26 Score=202.84 Aligned_cols=137 Identities=37% Similarity=0.533 Sum_probs=121.8
Q ss_pred CccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 014598 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (422)
Q Consensus 2 pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
+++|.|+||+|+.+++.|.+.|++.||++||||+.+...
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----------------------------------------- 40 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----------------------------------------- 40 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC-----------------------------------------
Confidence 689999999999999999999999999999999872100
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHc
Q 014598 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
+ .....++.|+++|+.|....++...++.+++||+...++| +|||||.+|.|||+++++||||+..
T Consensus 41 ----~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 41 ----E---------NLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred ----c---------ccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 0 0011256789999999988889999999999999998766 8999999999999999999999999
Q ss_pred CCChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHH
Q 014598 161 QLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGF 240 (422)
Q Consensus 161 ~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf 240 (422)
+++++ +|+++||+.||.+.||.+|
T Consensus 108 ~~~~~--------------------------------------------------------~a~~~vr~~r~~~~~~~~~ 131 (139)
T cd00127 108 GLSLR--------------------------------------------------------EAYEFVKSRRPIISPNAGF 131 (139)
T ss_pred CCCHH--------------------------------------------------------HHHHHHHHHCCccCCCHHH
Confidence 99999 9999999999999999999
Q ss_pred HHHHHHHH
Q 014598 241 LEQLKMFE 248 (422)
Q Consensus 241 ~~qL~~~~ 248 (422)
++||..||
T Consensus 132 ~~~l~~~~ 139 (139)
T cd00127 132 MRQLKEYE 139 (139)
T ss_pred HHHHHHhC
Confidence 99999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=5.5e-27 Score=204.12 Aligned_cols=131 Identities=34% Similarity=0.528 Sum_probs=116.4
Q ss_pred eEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 014598 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (422)
Q Consensus 9 LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (422)
||||+..++. ...|+++||++|||++.....+
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~----------------------------------------------- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP----------------------------------------------- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS-----------------------------------------------
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc-----------------------------------------------
Confidence 7999999999 9999999999999998721000
Q ss_pred hhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHcCCChhch
Q 014598 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGL 167 (422)
Q Consensus 89 ~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA 167 (422)
. .....++.++++|+.|....++..+|+.+++||+.+.++| +|||||.+|+|||+++++||||+..+++++
T Consensus 33 ~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~-- 104 (133)
T PF00782_consen 33 Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLE-- 104 (133)
T ss_dssp H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHH--
T ss_pred h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHH--
Confidence 0 0122357889999999889999999999999999998765 899999999999999999999999999999
Q ss_pred hhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 014598 168 NKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQLKMF 247 (422)
Q Consensus 168 ~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~qL~~~ 247 (422)
+|++.|++.||.+.||.+|++||..|
T Consensus 105 ------------------------------------------------------~A~~~v~~~rp~~~~~~~~~~~L~~~ 130 (133)
T PF00782_consen 105 ------------------------------------------------------EAIEYVRSRRPQINPNPSFIRQLYEY 130 (133)
T ss_dssp ------------------------------------------------------HHHHHHHHHSTTSTHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999999
Q ss_pred HH
Q 014598 248 EE 249 (422)
Q Consensus 248 ~~ 249 (422)
|.
T Consensus 131 e~ 132 (133)
T PF00782_consen 131 EK 132 (133)
T ss_dssp HH
T ss_pred hc
Confidence 85
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=217.28 Aligned_cols=141 Identities=26% Similarity=0.371 Sum_probs=119.5
Q ss_pred CccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 014598 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (422)
Q Consensus 2 pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
+++|.|+||||+...+.|.+.|++.||++|||++.+.+ ..
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~-------------------~~--------------------- 134 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFD-------------------GL--------------------- 134 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccc-------------------cc---------------------
Confidence 36899999999999999999999999999999975210 00
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHH-
Q 014598 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (422)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~- 159 (422)
+. .....++.|+++|+.|....+ .++|+++++||++.+++| +|||||.+|+|||+++++||||.+
T Consensus 135 ----~~--------~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 135 ----DW--------SLTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred ----cc--------cccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 00 001124788999999986654 578999999999999875 799999999999999999999977
Q ss_pred cCCChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHH
Q 014598 160 EQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDG 239 (422)
Q Consensus 160 ~~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~g 239 (422)
.+++++ +|++.||++||.+.||++
T Consensus 202 ~~~~~~--------------------------------------------------------eA~~~vr~~Rp~v~~n~~ 225 (547)
T PRK12361 202 PDLTVE--------------------------------------------------------EVLQQIKQIRKTARLNKR 225 (547)
T ss_pred cCCCHH--------------------------------------------------------HHHHHHHHHCCCCCCCHH
Confidence 489998 999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 014598 240 FLEQLKMFEEMG 251 (422)
Q Consensus 240 f~~qL~~~~~~~ 251 (422)
++++|+.|.+.+
T Consensus 226 q~~~l~~~~~~~ 237 (547)
T PRK12361 226 QLRALEKMLEQG 237 (547)
T ss_pred HHHHHHHHHHcC
Confidence 999999998754
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.75 E-value=2.3e-17 Score=151.43 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=76.6
Q ss_pred ceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhc----C-ceEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 101 ~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
++.++.+|+.|..... .+.+...++||++.+.. | +|+|||.+|+|||++++++|||...+++++
T Consensus 61 gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~---------- 129 (166)
T PTZ00242 61 GIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPL---------- 129 (166)
T ss_pred CCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHH----------
Confidence 5788999998875443 34466677888877643 4 799999999999999999999999889988
Q ss_pred ccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 014598 176 YYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQLKMFEE 249 (422)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~qL~~~~~ 249 (422)
+|++.|++.||.. .|.+++.+|..|++
T Consensus 130 ----------------------------------------------eAi~~vr~~R~~~-i~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 130 ----------------------------------------------DAVGFVREKRKGA-INQTQLQFLKKYKP 156 (166)
T ss_pred ----------------------------------------------HHHHHHHHHCCCC-chHHHHHHHHHHHH
Confidence 9999999999975 48999999999986
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.69 E-value=4.2e-16 Score=149.96 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=81.7
Q ss_pred cceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhccccc
Q 014598 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYYE 178 (422)
Q Consensus 100 ~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r~~~ 178 (422)
.+|.++++|+.|..... .+.+++.+++|+..+++| .|+|||.||+|||+++++||||. .|++++
T Consensus 136 ~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~Gmspe------------- 200 (241)
T PTZ00393 136 AGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPI------------- 200 (241)
T ss_pred cCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHH-------------
Confidence 36888999999986655 456778889999888777 79999999999999999999997 699998
Q ss_pred cchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcCC
Q 014598 179 STQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQLKMFEEMGF 252 (422)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~qL~~~~~~~~ 252 (422)
+|+++||+.||.+ .|..+++.|+.|++...
T Consensus 201 -------------------------------------------eAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 201 -------------------------------------------DAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred -------------------------------------------HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 9999999999987 48999999999998643
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.68 E-value=2.3e-16 Score=141.66 Aligned_cols=140 Identities=24% Similarity=0.449 Sum_probs=115.2
Q ss_pred cccCCeEECChh-chhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 4 LVREHLFIGNIS-DAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 4 kI~p~LyLGs~~-~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
+|.+++.+|-.+ ...|.+.+++.|+..||.+.++-+.
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~------------------------------------------ 64 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYEL------------------------------------------ 64 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhh------------------------------------------
Confidence 466677777654 4477888999999999999872110
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHcC
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~~ 161 (422)
+-|.. .+ +..+|+++.+|..|.-...-++.+.++++||+....-| .|+|||.||-+||+|+|++|||...+
T Consensus 65 -~a~s~-~w------k~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 65 -LAPSN-LW------KNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred -hhhhH-HH------HhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 00110 11 23468899999999877777888999999999988878 59999999999999999999999999
Q ss_pred CChhchhhhhhhccccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHH
Q 014598 162 LSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFL 241 (422)
Q Consensus 162 ~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~ 241 (422)
|+++ +|.+.||+.||.|--..+.+
T Consensus 137 wtpe--------------------------------------------------------~A~~~vr~iRp~VlL~~~Qw 160 (183)
T KOG1719|consen 137 WTPE--------------------------------------------------------AAVEHVRKIRPRVLLRPAQW 160 (183)
T ss_pred CCHH--------------------------------------------------------HHHHHHHhcCcceeecHHHH
Confidence 9999 99999999999999999999
Q ss_pred HHHHHHHH
Q 014598 242 EQLKMFEE 249 (422)
Q Consensus 242 ~qL~~~~~ 249 (422)
+.|++|..
T Consensus 161 ~~l~ef~~ 168 (183)
T KOG1719|consen 161 DVLKEFYK 168 (183)
T ss_pred HHHHHHHH
Confidence 99999975
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.54 E-value=3.8e-14 Score=131.50 Aligned_cols=66 Identities=36% Similarity=0.562 Sum_probs=59.7
Q ss_pred CcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHcCCChh
Q 014598 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (422)
Q Consensus 99 ~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~ 165 (422)
..++.++.+|+.|....++ +.++++++||++..++| +|||||++|+|||+||++||||...+++..
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~ 136 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLA 136 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCH
Confidence 3467889999999988887 77999999999999988 899999999999999999999999777665
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.30 E-value=3.6e-11 Score=113.22 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=55.4
Q ss_pred CCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHHcCCChh
Q 014598 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (422)
Q Consensus 98 ~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~ 165 (422)
.+.+|.++.+++.|....++. .+.+.++..+.+.+.|+|.|||.||.+|+.+|+|||||+.++++..
T Consensus 112 ~~~Gi~h~~l~f~Dg~tP~~~-~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~ 178 (225)
T KOG1720|consen 112 TDAGIDHHDLFFADGSTPTDA-IVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAG 178 (225)
T ss_pred cccCceeeeeecCCCCCCCHH-HHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHH
Confidence 344688999999998766643 3555566666777756899999999999999999999999999999
No 13
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.18 E-value=1.5e-10 Score=102.85 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=85.3
Q ss_pred CccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 014598 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (422)
Q Consensus 2 pskI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
+.+|.+.+|+++.....|.+.|+++||++|||+....+..
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~---------------------------------------- 41 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEE---------------------------------------- 41 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCC----------------------------------------
Confidence 3589999999999999999999999999999998621100
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHHcC
Q 014598 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (422)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~~~ 161 (422)
..|... .+.......++.|+++|+.....+ .+......++++. ..++||+||.+|. |++++.+.++.. .|
T Consensus 42 --~~p~~~--~~~~~a~~~gl~y~~iPv~~~~~~--~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g 111 (135)
T TIGR01244 42 --SQPDFA--QIKAAAEAAGVTYHHQPVTAGDIT--PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EG 111 (135)
T ss_pred --CCCCHH--HHHHHHHHCCCeEEEeecCCCCCC--HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cC
Confidence 001100 000111223688899998754221 1112222233332 2468999999999 987777666554 79
Q ss_pred CChhchhhhhhhcccccc
Q 014598 162 LSSEGLNKFIFSLEYYES 179 (422)
Q Consensus 162 ~~~~eA~~~i~~~r~~~~ 179 (422)
++.+++++..+...+..+
T Consensus 112 ~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 112 VPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CCHHHHHHHHHHcCCCcc
Confidence 999999999988877665
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.12 E-value=2.2e-10 Score=105.07 Aligned_cols=105 Identities=20% Similarity=0.306 Sum_probs=63.2
Q ss_pred hhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhc
Q 014598 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (422)
Q Consensus 17 a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 96 (422)
..|++.|++.|++.||.+.+ ..|+..+..++ +. ..
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~-----------------~~EL~~l~Vp~------------------------L~----~~ 95 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLT-----------------DHELARLGVPD------------------------LG----EA 95 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S------------------HHHHHHTT-TT------------------------HH----HH
T ss_pred HHHHHHHHHCCCCEEEEeCc-----------------HHHHHHcCCcc------------------------HH----HH
Confidence 46778999999999999976 33444333211 11 11
Q ss_pred cCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHHHHHHHHc-CCChhch
Q 014598 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGL 167 (422)
Q Consensus 97 ~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~AYLm~~~-~~~~~eA 167 (422)
....++.++++||.|....++.... +..+-|...+++| +|+|||..|.+||.+|+|.+|+... .++.++|
T Consensus 96 ~~~~Gi~~~h~PI~D~~aPd~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~A 167 (168)
T PF05706_consen 96 AQARGIAWHHLPIPDGSAPDFAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQA 167 (168)
T ss_dssp HHHTT-EEEE----TTS---HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHH
T ss_pred HHHcCCEEEecCccCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhc
Confidence 1234688999999999888865443 5677788888888 7999999999999999998888764 4666655
No 15
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.08 E-value=2.3e-10 Score=105.05 Aligned_cols=118 Identities=10% Similarity=0.183 Sum_probs=70.0
Q ss_pred ccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 3 skI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
..|.++||-|+.+.+.+..+|+++||++||||..+.
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-------------------------------------------- 43 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP-------------------------------------------- 43 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC--------------------------------------------
Confidence 368999999999999999999999999999998621
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCc--cH-HHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHH
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESE--NL-LDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~--~l-~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
+...... ..+..+|..+++++...... .+ .+.+.++++.|-+. ++.+|||||..|..|+++||++|- +.
T Consensus 44 ---~~~~~~~---f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 44 ---PSQDFLE---FAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp -----HHHHH---HHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred ---CCHHHHH---HHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 0000000 11234577778888655431 11 22344555544322 356999999999999999999999 78
Q ss_pred cCCChhchhhhhh
Q 014598 160 EQLSSEGLNKFIF 172 (422)
Q Consensus 160 ~~~~~~eA~~~i~ 172 (422)
+||+...|+...+
T Consensus 116 Q~W~~~~i~~Ey~ 128 (164)
T PF03162_consen 116 QGWSLSSIFDEYR 128 (164)
T ss_dssp TTB-HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 9999998775444
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.94 E-value=7.9e-09 Score=91.53 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=53.9
Q ss_pred ceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhc--C-ceEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhccc
Q 014598 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEY 176 (422)
Q Consensus 101 ~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r~ 176 (422)
+|..+-.|.+|..... -+..+.-+.......++ | -|-|||.||.+|.+.+||--|+-. |+.+|+|++||+++|-
T Consensus 62 GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr 138 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR 138 (173)
T ss_pred CceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh
Confidence 4777778888874332 23333333444444443 4 599999999999999998888754 9999999999999973
No 17
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.85 E-value=3.1e-08 Score=81.33 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHHh----cCceEEEecCCCCchHHHHHHHHHHHc
Q 014598 105 MTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 105 l~i~i~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
...++.|....+....|-..++.++.... +++|+|||.+|+|||++++++|+|...
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00404 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 33456666544444445555555555543 468999999999999999999999874
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.85 E-value=3.1e-08 Score=81.33 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHHh----cCceEEEecCCCCchHHHHHHHHHHHc
Q 014598 105 MTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 105 l~i~i~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
...++.|....+....|-..++.++.... +++|+|||.+|+|||++++++|+|...
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00012 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 33456666544444445555555555543 468999999999999999999999874
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.83 E-value=1e-08 Score=88.37 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=56.0
Q ss_pred ccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 3 skI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
.+|.+.+|+++.....|++.|++.||++|||++... |-+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-----------------E~~------------------------ 41 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-----------------EEP------------------------ 41 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TT-----------------STT------------------------
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-----------------CCC------------------------
Confidence 579999999999999999999999999999997511 000
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHh-cCceEEEecCCCCchHHHHHH
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK-EGGVLVHCFAGVSRSAAIITA 154 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~-~g~VLVHC~aGvsRS~tvv~A 154 (422)
.-|. ...++...+..++.|+++||..... + . ..+..|.+.... .++||+||..|. ||.++.+.
T Consensus 42 -~qp~--~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~---~~v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 42 -GQPS--SAEEAAAAEALGLQYVHIPVDGGAI-T-E---EDVEAFADALESLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp -T-T---HHCHHHHHHHCT-EEEE----TTT----H---HHHHHHHHHHHTTTTSEEEE-SCSH-HHHHHHHH
T ss_pred -CCCC--HHHHHHHHHHcCCeEEEeecCCCCC-C-H---HHHHHHHHHHHhCCCCEEEECCCCh-hHHHHHHH
Confidence 0000 1122333455689999999985431 1 1 223333322222 468999999995 99776554
No 20
>PLN02727 NAD kinase
Probab=98.53 E-value=3.9e-07 Score=101.58 Aligned_cols=108 Identities=8% Similarity=0.124 Sum_probs=75.6
Q ss_pred CeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014598 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (422)
Q Consensus 8 ~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (422)
.+|+++.+.+.+++.|++.||++|||++...+ . . ..
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E-------~----------------------~---------------q~ 297 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIV-------K----------------------D---------------NF 297 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCc-------C----------------------C---------------Cc
Confidence 48999999999999999999999999986210 0 0 00
Q ss_pred chhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHHcCC
Q 014598 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (422)
Q Consensus 88 ~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~ 162 (422)
. ..+++.+.+..++.|+++|+.+....+ .+.+.+..+++++. ...+||+||.+|..|+++|++.|+.+..+.
T Consensus 298 ~-~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 298 Y-QAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred h-hHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 0 112333344457899999997654333 22344444445321 256899999999999999999999988765
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.48 E-value=1e-06 Score=83.90 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=41.9
Q ss_pred CCcceEEEEEe-cCCCCCccHHHHHHHHHHHHHHHHh---cCceEEEecCCCCchHHHHHHHHHHH
Q 014598 98 KDLKLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 98 ~~~~i~~l~i~-i~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
....+.++++. +.|....+-...|-..++.++.... .++|+|||.+|+|||++++++++|..
T Consensus 126 ~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~ 191 (231)
T cd00047 126 ETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQ 191 (231)
T ss_pred CceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 44566666663 5665544433445444555555542 45899999999999999999998765
No 22
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.38 E-value=2.3e-06 Score=82.93 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=39.4
Q ss_pred cceEEEEE-ecCCCCCccHHHHHHHHHHHHHHHHh--cCceEEEecCCCCchHHHHHHHHHHH
Q 014598 100 LKLVRMTV-PIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 100 ~~i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
..+.++++ .+.|.+...-...|-..+..++.... .|+|+|||.+|+|||++++++++|..
T Consensus 156 ~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~ 218 (258)
T smart00194 156 RTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQ 218 (258)
T ss_pred EEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHH
Confidence 44555555 45666544323334444444444443 46899999999999999999998754
No 23
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.31 E-value=2.5e-06 Score=77.69 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=21.2
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCChhc
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEG 166 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~e 166 (422)
++||+||.+|..|++ +++|.|+...|.+.++
T Consensus 125 ~p~l~HC~aGKDRTG-~~~alll~~lGV~~~~ 155 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTG-VVAALLLSLLGVPDED 155 (164)
T ss_dssp --EEEE-SSSSSHHH-HHHHHHHHHTT--HHH
T ss_pred CcEEEECCCCCccHH-HHHHHHHHHcCCCHHH
Confidence 689999999999985 5666677777988774
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=6.9e-06 Score=71.65 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=77.2
Q ss_pred ccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 3 skI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
.+|.+.|+|++.....|+..++..|++.|||-... .|-+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPD-----------------gEe~------------------------ 42 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPD-----------------GEEP------------------------ 42 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCC-----------------CCCC------------------------
Confidence 57999999999999999999999999999999741 1100
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHh--cCceEEEecCCCCchHHHHHHHHHHHc
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aGvsRS~tvv~AYLm~~~ 160 (422)
.... +..+....+..++.|.+||+.....+. .-++-..+++. +|.||.||..| .||.++=.--. ...
T Consensus 43 --~QP~-~~~i~~aa~~aGl~y~~iPV~~~~iT~------~dV~~f~~Al~eaegPVlayCrsG-tRs~~ly~~~~-~~~ 111 (130)
T COG3453 43 --GQPG-FAAIAAAAEAAGLTYTHIPVTGGGITE------ADVEAFQRALDEAEGPVLAYCRSG-TRSLNLYGLGE-LDG 111 (130)
T ss_pred --CCCC-hHHHHHHHHhcCCceEEeecCCCCCCH------HHHHHHHHHHHHhCCCEEeeecCC-chHHHHHHHHH-Hhc
Confidence 0000 113344445567889999997643221 12233344442 67999999999 78866533222 345
Q ss_pred CCChhchhhhhhh
Q 014598 161 QLSSEGLNKFIFS 173 (422)
Q Consensus 161 ~~~~~eA~~~i~~ 173 (422)
|++.+|+..+=+.
T Consensus 112 gm~~de~~a~g~a 124 (130)
T COG3453 112 GMSRDEIEALGQA 124 (130)
T ss_pred CCCHHHHHHHHHh
Confidence 8888865544333
No 25
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.13 E-value=7.4e-06 Score=74.26 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHH-HHHHHHcCCChhchhhhhhhccccccchhhhhccccchhhhcc
Q 014598 118 LDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIIT-AYLMRTEQLSSEGLNKFIFSLEYYESTQSYCLFLSDEYEICDC 196 (422)
Q Consensus 118 ~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~-AYLm~~~~~~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~~~~ 196 (422)
-.+....++|+++.-+.-.+||||.+|+|||+++.. |-|.-.-.+.-+
T Consensus 77 e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~------------------------------- 125 (172)
T COG5350 77 EAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDET------------------------------- 125 (172)
T ss_pred HHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChH-------------------------------
Confidence 458899999999998888999999999999987532 233333355555
Q ss_pred ccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHH
Q 014598 197 HFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQ 243 (422)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~q 243 (422)
+..+.++..+|.+.||...+.-
T Consensus 126 -------------------------ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 126 -------------------------ELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred -------------------------HHHHHHHhcCcccCCChhHHHH
Confidence 7778889999999999876653
No 26
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.99 E-value=1.1e-05 Score=73.02 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=44.6
Q ss_pred CCcceEEEEEecCCCCCccHHHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHH
Q 014598 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (422)
Q Consensus 98 ~~~~i~~l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~ 158 (422)
...++.|+|||+.|. ....-+.|+..++|+...-++..+.+||.+|.+|++|..+.|.|.
T Consensus 89 ~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999998 455567799999999988444589999999999999988888775
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.94 E-value=5.5e-05 Score=80.23 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=41.1
Q ss_pred ceEEEEE-ecCCCCCccHHHHHHHHHHHHHHHHhc----------CceEEEecCCCCchHHHHHHHHHHHcC-CChh
Q 014598 101 KLVRMTV-PIRDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTEQ-LSSE 165 (422)
Q Consensus 101 ~i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~aGvsRS~tvv~AYLm~~~~-~~~~ 165 (422)
.|.++++ .+.|.+..+-.+.|....+.++....+ ++++|||.|||+||+|++++|+|...+ .+++
T Consensus 422 tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle 498 (535)
T PRK15375 422 TIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLE 498 (535)
T ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHH
Confidence 4666666 578865433223343334444443211 346899999999999999999997543 4566
No 28
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.65 E-value=0.00044 Score=73.14 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=78.6
Q ss_pred EEEEEecCCC--CCccHHHHHHHHHHHHHHHHhc--C-ceEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhcccc
Q 014598 103 VRMTVPIRDM--ESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYY 177 (422)
Q Consensus 103 ~~l~i~i~D~--~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r~~ 177 (422)
.++++++... +..+|...|+++..||...+.+ + +|||+|..|...|+.|+.|.|++.++....- .. ...+..
T Consensus 340 ~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~--~~-~~~~~~ 416 (451)
T PF04179_consen 340 KYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNF--RD-SFERPS 416 (451)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCc--cc-ccccCC
Confidence 3466666543 5668999999999999999976 5 7999999999999999999999998765430 00 001111
Q ss_pred ccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 014598 178 ESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQLKMF 247 (422)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~qL~~~ 247 (422)
++.+ .+..-+..|.+.+|.+.|..+.+++...|
T Consensus 417 itK~-------------------------------------~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 417 ITKD-------------------------------------DIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred CCHH-------------------------------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 1111 23367789999999999999999998877
No 29
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.63 E-value=0.00027 Score=66.29 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=35.8
Q ss_pred ceEEEEE-ecCCCCCccHHHHHHHHHHHHHHH---H--hcCceEEEecCCCCchHHHHHHHHHHH
Q 014598 101 KLVRMTV-PIRDMESENLLDYLDVCFDFIDRR---R--KEGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 101 ~i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~---~--~~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
.+.++++ .+.|..... .....++|++.. . ..+.|+|||.+|++||++++++.+|..
T Consensus 134 ~v~~~~~~~W~~~~~P~---~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~ 195 (235)
T PF00102_consen 134 TVTHFHYTNWPDDGVPP---SPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIE 195 (235)
T ss_dssp EEEEEEEESSSSSSSGS---SSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred cccceeeeecccccccc---ccchhhhhhhhccccccCCccceEeecccccccccccccchhhcc
Confidence 3444444 455444332 123334455444 3 235899999999999999999998865
No 30
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.55 E-value=0.00061 Score=68.72 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.8
Q ss_pred CceEEEecCCCCchHHHHHHHHHHH
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
|+|+|||.+|+|||+|++|..++..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~ 254 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLN 254 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHH
Confidence 6899999999999999998876543
No 31
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.45 E-value=0.00093 Score=67.78 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.5
Q ss_pred CceEEEecCCCCchHHHHHHHHHHH
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
|+|+|||.+|+|||++++|..++..
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~ 272 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALE 272 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHH
Confidence 6899999999999999988766543
No 32
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.40 E-value=0.00048 Score=69.21 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred CceEEEecCCCCchHHHHHHHHHHH-----cCCChhchhhhhhhccccc
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGLNKFIFSLEYYE 178 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~-----~~~~~~eA~~~i~~~r~~~ 178 (422)
|+|+|||.+|+|||+|+++..++.. ..+++.++++.|+..|+.-
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~ 278 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNC 278 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccc
Confidence 6899999999999999988877653 2456778888888888654
No 33
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.35 E-value=0.00062 Score=68.38 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=37.3
Q ss_pred CceEEEecCCCCchHHHHHHHHHHH-----cCCChhchhhhhhhccccccch
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGLNKFIFSLEYYESTQ 181 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~-----~~~~~~eA~~~i~~~r~~~~~~ 181 (422)
|+|+|||.+|+|||+|+++..++.. ..+++.+++..|+..|...-.+
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt 273 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNC 273 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCC
Confidence 5899999999999999988776642 3567788889999888665433
No 34
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=97.29 E-value=0.00029 Score=74.15 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=58.2
Q ss_pred EEEecCCCCCccHHHHHHHHHHHHHHHHhcC---ceEEEecCCCCchHHHHHHHHHHHcCCC-hhchhhhhhhccccc
Q 014598 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKEG---GVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGLNKFIFSLEYYE 178 (422)
Q Consensus 105 l~i~i~D~~~~~l~~~~~~~~~fI~~~~~~g---~VLVHC~aGvsRS~tvv~AYLm~~~~~~-~~eA~~~i~~~r~~~ 178 (422)
..++++|.....|.. +-.+.+-++..+... -|.|||.+|.+|+++||+||||...-.. +++|+.+...+|++.
T Consensus 76 ~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~ 152 (434)
T KOG2283|consen 76 ARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDE 152 (434)
T ss_pred eecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccc
Confidence 347899997777544 556667788888754 4899999999999999999999986654 889998888888433
No 35
>PHA02738 hypothetical protein; Provisional
Probab=97.26 E-value=0.00093 Score=67.68 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=36.3
Q ss_pred CceEEEecCCCCchHHHHHHHHHHH-----cCCChhchhhhhhhccccccch
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGLNKFIFSLEYYESTQ 181 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~-----~~~~~~eA~~~i~~~r~~~~~~ 181 (422)
|+|+|||.+|+|||+|++|..++.. ..+++.+++..|+..|+.--.+
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt 279 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFI 279 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCC
Confidence 5799999999999999877665432 3567778899999888765433
No 36
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.09 E-value=0.0033 Score=61.04 Aligned_cols=109 Identities=13% Similarity=0.212 Sum_probs=74.3
Q ss_pred ccccCCeEECChhchhcHHhhhcCCCeEEEEccccCcccccccccccCCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 014598 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (422)
Q Consensus 3 skI~p~LyLGs~~~a~d~~~L~~~GIt~VLnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (422)
+-|.++||-++.+...+..+|+.++.+.||.|+.+. +
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~---y---------------------------------------- 97 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP---Y---------------------------------------- 97 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCC---C----------------------------------------
Confidence 347789999999999999999999999999998731 1
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCC------CccHHH-HHHHHHHHHHHHHhc--CceEEEecCCCCchHHHHH
Q 014598 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME------SENLLD-YLDVCFDFIDRRRKE--GGVLVHCFAGVSRSAAIIT 153 (422)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~i~~l~i~i~D~~------~~~l~~-~~~~~~~fI~~~~~~--g~VLVHC~aGvsRS~tvv~ 153 (422)
|.+.. . ..+..+|.+++|-|...- ..++.+ -+..++++ .+.. -.+||||..|--|..+||.
T Consensus 98 ---p~~nl---~-f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 98 ---PEENL---N-FLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred ---ChHHH---H-HHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHH
Confidence 11111 0 123345666777665433 233333 23334443 3333 3899999999999999888
Q ss_pred HHHHHHcCCChh
Q 014598 154 AYLMRTEQLSSE 165 (422)
Q Consensus 154 AYLm~~~~~~~~ 165 (422)
..- +.++|++.
T Consensus 168 clR-klq~W~ls 178 (249)
T KOG1572|consen 168 CLR-KLQNWSLS 178 (249)
T ss_pred HHH-HHhccchh
Confidence 755 66799987
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.08 E-value=0.0015 Score=63.96 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=46.6
Q ss_pred HHHHHHHHHHh--cCceEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhccccccchh
Q 014598 123 VCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLEYYESTQS 182 (422)
Q Consensus 123 ~~~~fI~~~~~--~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r~~~~~~~ 182 (422)
....++.-.+. +++||+||.+|..|.+.+++-|++...+.....+.+++.+-++......
T Consensus 123 ~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 123 RLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 33444444443 3799999999999999999999999977777778888888887776664
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.04 E-value=0.0006 Score=67.06 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=42.1
Q ss_pred cCCcceEEEEE-ecCCCCCccHHHHHHHHHHHHHHH-HhcCceEEEecCCCCchHHHHHHHHHHH
Q 014598 97 GKDLKLVRMTV-PIRDMESENLLDYLDVCFDFIDRR-RKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 97 ~~~~~i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~-~~~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
+...+|.++++ .+.|....++.+. -+.++-+... .+.|.++|||.|||||++|+++--.+.+
T Consensus 180 ~~~k~Ihhf~y~nW~D~~~p~i~sl-~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~ 243 (302)
T COG5599 180 GPPKKIHHFQYINWVDFNVPDIRSL-TEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243 (302)
T ss_pred CCccEEEEEEecCccccCCcCHHHH-HHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh
Confidence 45567777777 4788877766653 2333333333 2556899999999999999887766554
No 39
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.0049 Score=69.97 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=41.2
Q ss_pred ceEEEEE-ecCCCCCccHHHHHHHHHHHHHHHHhc-C-ceEEEecCCCCchHHHHHHHHHHH
Q 014598 101 KLVRMTV-PIRDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 101 ~i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
.|.|+.+ .+.|.+..+=..+|-..++.|+..++. + .|||||.||+|||++++.+-+|-.
T Consensus 1027 ~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~ 1088 (1144)
T KOG0792|consen 1027 TVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALC 1088 (1144)
T ss_pred eeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHH
Confidence 4444444 677777666555665555556555544 5 899999999999999988766654
No 40
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.33 E-value=0.011 Score=61.47 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=66.9
Q ss_pred cceEEEEEecCC---CCCccHHHH-HHHHHHHHHHHHhcCc-eEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhc
Q 014598 100 LKLVRMTVPIRD---MESENLLDY-LDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSL 174 (422)
Q Consensus 100 ~~i~~l~i~i~D---~~~~~l~~~-~~~~~~fI~~~~~~g~-VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~ 174 (422)
.++.|+.+.-.. .++...... ...+-.|.+.....+. |+|||.+|..|..=|+++|||...++++.
T Consensus 85 ~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~--------- 155 (393)
T KOG2386|consen 85 RGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSS--------- 155 (393)
T ss_pred cceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHH---------
Confidence 456665554322 222333333 3334455555555665 99999999999999999999999999988
Q ss_pred cccccchhhhhccccchhhhccccchhhhhhhhcccccCCCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc
Q 014598 175 EYYESTQSYCLFLSDEYEICDCHFKLTYFLFSFALFFPLSFCPCIPAGALESLRQSCESVCPNDGFLEQLKMFEEM 250 (422)
Q Consensus 175 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~v~~~rp~~~pn~gf~~qL~~~~~~ 250 (422)
+|++.+...|+...=....+..|-..+..
T Consensus 156 -----------------------------------------------~aik~f~~~r~~gi~k~dyi~~L~~~~~~ 184 (393)
T KOG2386|consen 156 -----------------------------------------------EAIKRFADARPPGIEKQDYIDALYSRYHD 184 (393)
T ss_pred -----------------------------------------------HHHHHHHHhCCCccCchHHHHHHhhcccc
Confidence 89999999998866666677777666643
No 41
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.12 E-value=0.0065 Score=63.57 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=34.5
Q ss_pred hcCceEEEecCCCCchHHH-HHHHHH---HHcCC----Chhchhhhhhhccccccch
Q 014598 133 KEGGVLVHCFAGVSRSAAI-ITAYLM---RTEQL----SSEGLNKFIFSLEYYESTQ 181 (422)
Q Consensus 133 ~~g~VLVHC~aGvsRS~tv-v~AYLm---~~~~~----~~~eA~~~i~~~r~~~~~~ 181 (422)
..|.|.|||.||++|++|+ |+--|| ++.|+ ++...++||++.|...--+
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQT 506 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQT 506 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhh
Confidence 4579999999999999994 555554 33455 3456678888887665444
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.36 E-value=0.043 Score=56.49 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.6
Q ss_pred cCceEEEecCCCCchHHHHHHHHH
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLM 157 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm 157 (422)
.|++.|||.+|+||++|+|+...+
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~ 322 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHA 322 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHH
Confidence 468999999999999999976633
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.73 E-value=0.1 Score=53.67 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHH
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
.+.++|||.|||+|++|.++.--+..
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHH
Confidence 34899999999999999887755543
No 44
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=91.27 E-value=0.12 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.1
Q ss_pred ceeccccceeeeccCCccc
Q 014598 311 AYRCKKCRRVVALQENVVD 329 (422)
Q Consensus 311 ~yrCrKCR~~Lf~~~~i~~ 329 (422)
.|.|++|+..|+++.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 6899999999999999998
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.00 E-value=0.35 Score=55.87 Aligned_cols=76 Identities=16% Similarity=0.340 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHHc-CC-Chhchhhhhhhccccccchhhhhccccchhh
Q 014598 116 NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTE-QL-SSEGLNKFIFSLEYYESTQSYCLFLSDEYEI 193 (422)
Q Consensus 116 ~l~~~~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~~-~~-~~~eA~~~i~~~r~~~~~~~~~~~~~~~~~~ 193 (422)
..+..+++..+-.+....+|.+.|||.+|++||.+.+++-++... +. ...|..+-++.+|...+- |..-++.|++
T Consensus 1000 ~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~---mv~t~~QY~f 1076 (1087)
T KOG4228|consen 1000 GPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPG---MVDTSDQYQF 1076 (1087)
T ss_pred chhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCcc---ccCcHHHHHH
Confidence 344455555555554445679999999999999998887776542 11 223444445555444432 2334566777
Q ss_pred h
Q 014598 194 C 194 (422)
Q Consensus 194 ~ 194 (422)
|
T Consensus 1077 c 1077 (1087)
T KOG4228|consen 1077 C 1077 (1087)
T ss_pred H
Confidence 7
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.18 E-value=1.5 Score=51.00 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=45.0
Q ss_pred eEEEEE-ecCCCCCccHHHHHHHHHHHHHHHH-----hcCceEEEecCCCCchHHHHHHH-----HHHHcCCChhchhhh
Q 014598 102 LVRMTV-PIRDMESENLLDYLDVCFDFIDRRR-----KEGGVLVHCFAGVSRSAAIITAY-----LMRTEQLSSEGLNKF 170 (422)
Q Consensus 102 i~~l~i-~i~D~~~~~l~~~~~~~~~fI~~~~-----~~g~VLVHC~aGvsRS~tvv~AY-----Lm~~~~~~~~eA~~~ 170 (422)
+.++++ .+.|..-..-.. ..+.|+++.. ..|.++|||.||++|+++.++-= ++....++.-+-+..
T Consensus 695 v~qfhFt~Wpd~gvPe~~t---~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~ 771 (1087)
T KOG4228|consen 695 VRQFHFTAWPDHGVPETPT---GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKT 771 (1087)
T ss_pred eeeeeeccCCCCCCcccch---HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHH
Confidence 444444 466665443222 2356777765 35899999999999999955322 223345566666666
Q ss_pred hhhccccc
Q 014598 171 IFSLEYYE 178 (422)
Q Consensus 171 i~~~r~~~ 178 (422)
|++.|...
T Consensus 772 lR~QR~~m 779 (1087)
T KOG4228|consen 772 LRRQRNNM 779 (1087)
T ss_pred HHhccccc
Confidence 67666544
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=85.11 E-value=2 Score=38.87 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHh----cCceEEEecCCCCc----hHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 110 RDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aGvsR----S~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
.|-+.-+|.... +-..-+++.++ .++.+||+.+.-.+ +|.++.||+|...++|.++|++.+.+..
T Consensus 39 ~DFGPlnL~~ly-rfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 39 ADFGPLNLAQLY-RFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp S------HHHHH-HHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CcCCCccHHHHH-HHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 566667765533 33333555554 36899999876543 4679999999999999999998887774
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.15 E-value=3.5 Score=45.25 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=21.4
Q ss_pred HHHHHh-cC-ceEEEecCCCCchHHHHHHHH
Q 014598 128 IDRRRK-EG-GVLVHCFAGVSRSAAIITAYL 156 (422)
Q Consensus 128 I~~~~~-~g-~VLVHC~aGvsRS~tvv~AYL 156 (422)
|.+.+. .+ .|||||.-|-.|+|-+|+--+
T Consensus 366 Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 366 IADKVESESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred HHHHHhcCCceEEEEcCCCccchHHHHHHHH
Confidence 444444 44 699999999999999876443
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=78.78 E-value=9 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.5
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
+..|+|+|..| .||... |..+...|.+
T Consensus 61 ~~~ivvyC~~G-~rs~~a--~~~L~~~G~~ 87 (101)
T cd01518 61 GKKVLMYCTGG-IRCEKA--SAYLKERGFK 87 (101)
T ss_pred CCEEEEECCCc-hhHHHH--HHHHHHhCCc
Confidence 34799999998 688643 3445566664
No 50
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=74.25 E-value=2.8 Score=37.20 Aligned_cols=65 Identities=25% Similarity=0.507 Sum_probs=37.0
Q ss_pred CCCceeccccceeeeccCCcccCCCCCCcchhhhhhhccCCCCCCCCCCCCceeeeccccc--chhhhc---ccccceee
Q 014598 308 RTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRW--MTAVEE---GALEGKLS 382 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~i~~H~~~~~~~~~~~~k~~~~~~~~~~~~~~Css~Fiepl~W--M~~~~~---g~~~GKL~ 382 (422)
....|.|+.|+..||.+++=..... | | - -|-+|+.. +....+ |...--+.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf~Sg~--G-----W-----------------P-SF~~~i~~~~v~~~~D~s~g~~R~Ev~ 88 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKFDSGC--G-----W-----------------P-SFWQPIPGDAVKEREDFSHGMVRTEVR 88 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEETSSS--S-----S-----------------S-EESSCSSTTSEEEEEEECTSSEEEEEE
T ss_pred CCEEEEcCCCCCccccCcccccCCc--C-----C-----------------c-cccCcCChHHEEEeccccCCceEEEEE
Confidence 4579999999999998874332111 1 1 0 13344432 221111 22334589
Q ss_pred cCCCCCCccceeecc
Q 014598 383 CAHCEARLGYFNWSG 397 (422)
Q Consensus 383 CPkC~akLGsf~w~G 397 (422)
|.+|++.||.-=-.|
T Consensus 89 C~~Cg~HLGHVF~DG 103 (124)
T PF01641_consen 89 CARCGSHLGHVFDDG 103 (124)
T ss_dssp ETTTCCEEEEEESTS
T ss_pred ecCCCCccccEeCCC
Confidence 999999999743355
No 51
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=71.81 E-value=4.2 Score=35.82 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=17.5
Q ss_pred CCCceeccccceeeeccCCcc
Q 014598 308 RTPAYRCKKCRRVVALQENVV 328 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~i~ 328 (422)
....|.|+-|...||.+++=-
T Consensus 30 ~~G~Y~C~~Cg~pLF~S~~Kf 50 (119)
T PRK05508 30 EKGTYVCKQCGAPLYRSEDKF 50 (119)
T ss_pred CCeEEEecCCCCccccccccc
Confidence 457999999999999987533
No 52
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=69.38 E-value=4.7 Score=36.57 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=16.6
Q ss_pred CCCceeccccceeeeccCC
Q 014598 308 RTPAYRCKKCRRVVALQEN 326 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~ 326 (422)
....|.|+.|...||.+.+
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~ 58 (142)
T PRK00222 40 EKGIYVCIVCGEPLFSSDT 58 (142)
T ss_pred CCeEEEecCCCchhcCCcc
Confidence 4579999999999998865
No 53
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=68.34 E-value=6.3 Score=40.02 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=41.5
Q ss_pred CceeccccceeeeccCCcccC--CCCCCcch--hhh--hhhccCC----------CCCCCCCCCC---ceeeecccccch
Q 014598 310 PAYRCKKCRRVVALQENVVDH--IPGEGETA--FEW--HKRKSGN----------RFNRSDESEC---SSIFVEPLRWMT 370 (422)
Q Consensus 310 ~~yrCrKCR~~Lf~~~~i~~H--~~~~~~~~--~~~--~k~~~~~----------~~~~~~~~~C---ss~Fiepl~WM~ 370 (422)
+.++|++|+..|.....+..- -|++.=.. =-| |+....+ ..-....+.| ..||+-..+++.
T Consensus 105 ~~~~C~~C~~~li~~~~~~~~~~LPSe~W~e~md~W~CH~~~~~~~~~~~~~~~~~~l~p~~~~~lvg~~~~l~~~~~~~ 184 (354)
T PF09814_consen 105 FSLCCRNCKNPLIPSRNFKRWKDLPSENWAEMMDFWHCHKPDFHEDHDHDYHAHNNSLKPREGDILVGDSYFLLHESDLQ 184 (354)
T ss_pred eEEECCCCCCcccCccccCEEecCCccchhhhhheEecCCCCccccccccccccccccccCCCcEEEechhheecchhcc
Confidence 689999999999877655311 11111000 011 0100000 0111222334 356664445554
Q ss_pred hhhcccccceeecCCCCCCccc
Q 014598 371 AVEEGALEGKLSCAHCEARLGY 392 (422)
Q Consensus 371 ~~~~g~~~GKL~CPkC~akLGs 392 (422)
.... ..+..+.|.+|++-||.
T Consensus 185 ~~~~-~~~~~v~C~~C~~~LG~ 205 (354)
T PF09814_consen 185 GDVI-RIERIVRCKRCSSQLGE 205 (354)
T ss_pred cccc-cCCcEEEeCCCCceeCC
Confidence 3111 13378999999999996
No 54
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=67.39 E-value=16 Score=41.05 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=15.4
Q ss_pred ceEEEecCCCCchHHHH
Q 014598 136 GVLVHCFAGVSRSAAII 152 (422)
Q Consensus 136 ~VLVHC~aGvsRS~tvv 152 (422)
.|+|||..|-+|+++-+
T Consensus 929 pIiVH~sdGaGRTG~Yi 945 (1004)
T KOG0793|consen 929 PIIVHCSDGAGRTGTYI 945 (1004)
T ss_pred ceEEEccCCCCccceee
Confidence 79999999999999844
No 55
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=65.92 E-value=9.6 Score=39.37 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=15.7
Q ss_pred hcC-ceEEEecCCCCchHHHHH
Q 014598 133 KEG-GVLVHCFAGVSRSAAIIT 153 (422)
Q Consensus 133 ~~g-~VLVHC~aGvsRS~tvv~ 153 (422)
.+| .|||||..|-+|++-|+.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 356 799999999999855433
No 56
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=60.63 E-value=4 Score=31.80 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.8
Q ss_pred cccceeecCCCCCCcccee
Q 014598 376 ALEGKLSCAHCEARLGYFN 394 (422)
Q Consensus 376 ~~~GKL~CPkC~akLGsf~ 394 (422)
-.+-.-+||+|++.||.|+
T Consensus 48 ~kd~~H~Cp~C~~~lg~~~ 66 (67)
T smart00714 48 FKDVNHYCPNCGAFLGTYN 66 (67)
T ss_pred ccCccEECCCCCCEeEEec
Confidence 3456679999999999985
No 57
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=59.93 E-value=8.7 Score=34.57 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.4
Q ss_pred CCCceeccccceeeeccCCcc
Q 014598 308 RTPAYRCKKCRRVVALQENVV 328 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~i~ 328 (422)
....|.|+.|...||.+.+=-
T Consensus 37 ~~G~Y~C~~Cg~pLF~S~~Kf 57 (134)
T TIGR00357 37 EEGIYVDITCGEPLFSSEDKF 57 (134)
T ss_pred CCeEEEccCCCCccccccchh
Confidence 456999999999999887533
No 58
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=55.24 E-value=7.7 Score=27.33 Aligned_cols=25 Identities=28% Similarity=0.926 Sum_probs=18.2
Q ss_pred ecCCCCCCccceeeccc---cCC-CC-Ccc
Q 014598 382 SCAHCEARLGYFNWSGI---QCS-CG-SWI 406 (422)
Q Consensus 382 ~CPkC~akLGsf~w~G~---qCs-CG-~wv 406 (422)
+||+|+..|-.....+. .|. || .|+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 59999999988888763 564 65 444
No 59
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host. The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....
Probab=54.39 E-value=2.8 Score=36.88 Aligned_cols=26 Identities=27% Similarity=0.822 Sum_probs=19.9
Q ss_pred ccceeecCCCCCCcccee-eccccCCC
Q 014598 377 LEGKLSCAHCEARLGYFN-WSGIQCSC 402 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~-w~G~qCsC 402 (422)
..|+|.|-+|+..+|..- +.|.+.+|
T Consensus 57 ~~~~I~C~~C~~~wG~~m~yk~~~LP~ 83 (123)
T PF11648_consen 57 PNGKIHCKNCGQDWGIMMKYKGVELPC 83 (123)
T ss_dssp EEEEEEETSTSBEEEEEEEETTEEEEE
T ss_pred eCCEEEcCCCChHhhhheEECCccccE
Confidence 579999999999999754 55655443
No 60
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.99 E-value=7.8 Score=25.09 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.4
Q ss_pred ecCCCCCCccceeeccccCC-CCCc
Q 014598 382 SCAHCEARLGYFNWSGIQCS-CGSW 405 (422)
Q Consensus 382 ~CPkC~akLGsf~w~G~qCs-CG~w 405 (422)
.||.|++.| .-+-..|+ ||.-
T Consensus 2 ~CP~C~~~V---~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEV---PESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCc---hhhcCcCCCCCCC
Confidence 589999887 22335787 8853
No 61
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=53.52 E-value=6.4 Score=31.09 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.8
Q ss_pred ccceeecCCCCCCcccee
Q 014598 377 LEGKLSCAHCEARLGYFN 394 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~ 394 (422)
.+-.-+||+|++.||.|+
T Consensus 55 kd~~H~Cp~C~~~lg~~~ 72 (73)
T PF10601_consen 55 KDVYHYCPNCGAFLGTYK 72 (73)
T ss_pred cCceEECCCCCCEeEEEe
Confidence 344579999999999885
No 62
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.68 E-value=8.1 Score=34.44 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=25.3
Q ss_pred ccceeecCCCCCCccceeeccccCC-CCCcccccee
Q 014598 377 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQ 411 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G~qCs-CG~wv~Paf~ 411 (422)
+--|-.||+|++|.=-.|=.=..|. ||.-+.|...
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCccCcchh
Confidence 3457899999999644443456897 9998877733
No 63
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=49.79 E-value=28 Score=28.82 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=18.1
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|||..|. ||.. +|.+++..|.+
T Consensus 67 ~~ivv~C~~G~-rs~~--a~~~L~~~G~~ 92 (109)
T cd01533 67 TPIVVNCAGRT-RSII--GAQSLINAGLP 92 (109)
T ss_pred CeEEEECCCCc-hHHH--HHHHHHHCCCC
Confidence 37999999996 7733 34555666764
No 64
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=49.58 E-value=25 Score=38.66 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=20.3
Q ss_pred HHHHHHHh-cC-ceEEEecCCCCchHHHHH
Q 014598 126 DFIDRRRK-EG-GVLVHCFAGVSRSAAIIT 153 (422)
Q Consensus 126 ~fI~~~~~-~g-~VLVHC~aGvsRS~tvv~ 153 (422)
.+|.+++. +| .|||||.-|-+|+.-|+.
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 34555565 45 799999999999866543
No 65
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.08 E-value=9.7 Score=32.94 Aligned_cols=33 Identities=33% Similarity=0.675 Sum_probs=23.7
Q ss_pred ccceeecCCCCCCccceeeccccCC-CCCccccc
Q 014598 377 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 409 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G~qCs-CG~wv~Pa 409 (422)
+--|-.||+|++|-=-.|=.=..|+ ||+-+.|.
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4457899999999633333346797 99888776
No 66
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=47.00 E-value=14 Score=26.63 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=9.3
Q ss_pred ccceeecCCCCCC
Q 014598 377 LEGKLSCAHCEAR 389 (422)
Q Consensus 377 ~~GKL~CPkC~ak 389 (422)
-+| ..||+|++.
T Consensus 16 ~~g-~~CP~Cg~~ 27 (46)
T PF12760_consen 16 PDG-FVCPHCGST 27 (46)
T ss_pred CCC-CCCCCCCCe
Confidence 344 679999997
No 67
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=46.46 E-value=5.8 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=14.1
Q ss_pred ceeccccceeeeccCCc
Q 014598 311 AYRCKKCRRVVALQENV 327 (422)
Q Consensus 311 ~yrCrKCR~~Lf~~~~i 327 (422)
.+||+.|.+.||...++
T Consensus 4 eiRC~~CnklLa~~g~~ 20 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEV 20 (51)
T ss_pred ceeccchhHHHhhhcCc
Confidence 68999999999986443
No 68
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=45.43 E-value=12 Score=27.45 Aligned_cols=21 Identities=33% Similarity=0.756 Sum_probs=18.5
Q ss_pred ccceeecCCCCCCccceeecc
Q 014598 377 LEGKLSCAHCEARLGYFNWSG 397 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G 397 (422)
..|+|.|+.|+.++-...|.|
T Consensus 2 l~g~l~C~~CG~~m~~~~~~~ 22 (58)
T PF13408_consen 2 LSGLLRCGHCGSKMTRRKRKG 22 (58)
T ss_pred CCCcEEcccCCcEeEEEECCC
Confidence 479999999999999988865
No 69
>PF12773 DZR: Double zinc ribbon
Probab=44.25 E-value=12 Score=27.17 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=20.8
Q ss_pred cceeecCCCCCCccceeeccccCC-CCCccccc
Q 014598 378 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 409 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf~w~G~qCs-CG~wv~Pa 409 (422)
.+-..||+|+.+|....=....|+ ||+-+.+.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPN 42 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence 445688888888883333345684 88876543
No 70
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=40.39 E-value=10 Score=35.62 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=5.6
Q ss_pred eccccCC-CCCcccc
Q 014598 395 WSGIQCS-CGSWITP 408 (422)
Q Consensus 395 w~G~qCs-CG~wv~P 408 (422)
+.|.+|+ |+....|
T Consensus 43 ~~~~~C~~C~~~~~~ 57 (188)
T PF08996_consen 43 PSGLQCPNCSTPLSP 57 (188)
T ss_dssp TTEEEETTT--B--H
T ss_pred cCcCcCCCCCCcCCH
Confidence 4456665 6665443
No 71
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=40.27 E-value=25 Score=35.51 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=17.8
Q ss_pred CCCceeccccceeeeccCCccc
Q 014598 308 RTPAYRCKKCRRVVALQENVVD 329 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~i~~ 329 (422)
....|.|.-|...||++.+=..
T Consensus 33 ~~G~y~c~~c~~~LF~s~~Kf~ 54 (283)
T PRK05550 33 EKGVYLCRRCGAPLFRSEDKFN 54 (283)
T ss_pred CCcEEEcCCCCchhcCChhhcc
Confidence 4579999999999999875433
No 72
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=40.00 E-value=19 Score=30.05 Aligned_cols=31 Identities=29% Similarity=0.717 Sum_probs=22.4
Q ss_pred cceeecCCCCCCccceeec--------cccCC-CCCcccc
Q 014598 378 EGKLSCAHCEARLGYFNWS--------GIQCS-CGSWITP 408 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf~w~--------G~qCs-CG~wv~P 408 (422)
.++=+||+|+.+|.-++-. ..+|. |++-+.+
T Consensus 31 ~~rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 31 FPRSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCCcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCCh
Confidence 4456899999999887753 34886 7877644
No 73
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=39.89 E-value=15 Score=25.49 Aligned_cols=23 Identities=35% Similarity=0.891 Sum_probs=15.8
Q ss_pred eecCCCCCCccceee-cc-ccC-CCCCc
Q 014598 381 LSCAHCEARLGYFNW-SG-IQC-SCGSW 405 (422)
Q Consensus 381 L~CPkC~akLGsf~w-~G-~qC-sCG~w 405 (422)
..|+.|+++ .|.. .| .-| +||+-
T Consensus 9 ~~C~~C~~~--~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSR--WFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCe--EeEccCCEEEhhhCceE
Confidence 469999988 4444 36 468 88864
No 74
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=39.39 E-value=35 Score=30.06 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.2
Q ss_pred cCCCCchHHHHHHHHHHHcCCChh
Q 014598 142 FAGVSRSAAIITAYLMRTEQLSSE 165 (422)
Q Consensus 142 ~aGvsRS~tvv~AYLm~~~~~~~~ 165 (422)
..|++|+.|.++|||+...-.+..
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~ 45 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSR 45 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhh
Confidence 359999999999999998766654
No 75
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.59 E-value=17 Score=25.10 Aligned_cols=26 Identities=31% Similarity=0.842 Sum_probs=16.2
Q ss_pred eeecCCCCCCccceee----cc--ccCC-CCCc
Q 014598 380 KLSCAHCEARLGYFNW----SG--IQCS-CGSW 405 (422)
Q Consensus 380 KL~CPkC~akLGsf~w----~G--~qCs-CG~w 405 (422)
++.||+|+++---=+. .| .||+ ||+-
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCE
Confidence 5899999965422222 13 4887 8863
No 76
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.75 E-value=46 Score=26.94 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=18.0
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
+..|+|+|..|. ||.. +|-.|...|.+
T Consensus 61 ~~~ivv~C~~G~-rs~~--aa~~L~~~G~~ 87 (100)
T cd01523 61 DQEVTVICAKEG-SSQF--VAELLAERGYD 87 (100)
T ss_pred CCeEEEEcCCCC-cHHH--HHHHHHHcCce
Confidence 347999999994 7743 33345666765
No 77
>PRK01415 hypothetical protein; Validated
Probab=37.64 E-value=1.1e+02 Score=30.31 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.8
Q ss_pred hcCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 133 KEGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 133 ~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
++.+|+++|..| -|| ..++++| +..|.+
T Consensus 170 k~k~Iv~yCtgG-iRs-~kAa~~L-~~~Gf~ 197 (247)
T PRK01415 170 KGKKIAMVCTGG-IRC-EKSTSLL-KSIGYD 197 (247)
T ss_pred CCCeEEEECCCC-hHH-HHHHHHH-HHcCCC
Confidence 344799999999 576 4445555 445664
No 78
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=36.01 E-value=13 Score=23.67 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.2
Q ss_pred cceeecCCCCCCc
Q 014598 378 EGKLSCAHCEARL 390 (422)
Q Consensus 378 ~GKL~CPkC~akL 390 (422)
.+--.||+|+++|
T Consensus 14 ~~~~fC~~CG~~L 26 (26)
T PF13248_consen 14 PDAKFCPNCGAKL 26 (26)
T ss_pred cccccChhhCCCC
Confidence 3445788888876
No 79
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=35.77 E-value=1.4e+02 Score=23.98 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=30.2
Q ss_pred EEEecCC---CCCccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHHHHH---HHHHHHcCCC
Q 014598 105 MTVPIRD---MESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIIT---AYLMRTEQLS 163 (422)
Q Consensus 105 l~i~i~D---~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~tvv~---AYLm~~~~~~ 163 (422)
+++|... .........+..........+.++ .|+|+|..|. |+...++ +|++...|.+
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 4566532 233344444444433333333445 6999997774 5544443 3556665664
No 80
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.48 E-value=19 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=17.8
Q ss_pred ecCCCCCCccc-eeeccccCC-CCCcc
Q 014598 382 SCAHCEARLGY-FNWSGIQCS-CGSWI 406 (422)
Q Consensus 382 ~CPkC~akLGs-f~w~G~qCs-CG~wv 406 (422)
.||.|+.+... -+.....|+ ||...
T Consensus 30 ~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 30 TCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCcccccccccccceEEcCCCCCEE
Confidence 58889888887 444456787 88653
No 81
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=34.42 E-value=86 Score=26.94 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=19.4
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|.|..|-.||+ .++++++..|..
T Consensus 87 ~~vvvyC~~~G~rs~--~a~~~L~~~G~~ 113 (128)
T cd01520 87 PKLLIYCARGGMRSQ--SLAWLLESLGID 113 (128)
T ss_pred CeEEEEeCCCCccHH--HHHHHHHHcCCc
Confidence 379999985546766 444788877875
No 82
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=34.38 E-value=20 Score=27.97 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.8
Q ss_pred cccccceeecCCCC
Q 014598 374 EGALEGKLSCAHCE 387 (422)
Q Consensus 374 ~g~~~GKL~CPkC~ 387 (422)
....+|.|.||+|+
T Consensus 47 ~~i~eg~L~Cp~c~ 60 (68)
T PF03966_consen 47 VEIVEGELICPECG 60 (68)
T ss_dssp EETTTTEEEETTTT
T ss_pred ccccCCEEEcCCCC
Confidence 34689999999997
No 83
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=33.64 E-value=36 Score=37.16 Aligned_cols=20 Identities=5% Similarity=-0.097 Sum_probs=17.3
Q ss_pred CCCCceeccccceeeeccCC
Q 014598 307 NRTPAYRCKKCRRVVALQEN 326 (422)
Q Consensus 307 ~~~~~yrCrKCR~~Lf~~~~ 326 (422)
.....|.|+.|...||.+.+
T Consensus 414 ~~~G~y~c~~c~~pLf~s~~ 433 (521)
T PRK14018 414 FKPGIYVDVVSGEPLFSSAD 433 (521)
T ss_pred CCCEEEEecCCCCccccCcc
Confidence 45679999999999999864
No 84
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=33.55 E-value=21 Score=24.31 Aligned_cols=23 Identities=35% Similarity=0.888 Sum_probs=11.0
Q ss_pred cCCCCCCccceee-ccccCC-CCCcc
Q 014598 383 CAHCEARLGYFNW-SGIQCS-CGSWI 406 (422)
Q Consensus 383 CPkC~akLGsf~w-~G~qCs-CG~wv 406 (422)
|..|++.+. ... ...+|. ||..|
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHRI 27 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-SE
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCeE
Confidence 556666554 222 235665 66655
No 85
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=33.45 E-value=44 Score=27.08 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=16.7
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~ 162 (422)
+..|+|+|..| .|| ..++.+|.. .|.
T Consensus 61 ~~~ivv~C~~G-~rS-~~aa~~L~~-~G~ 86 (110)
T COG0607 61 DDPIVVYCASG-VRS-AAAAAALKL-AGF 86 (110)
T ss_pred CCeEEEEeCCC-CCh-HHHHHHHHH-cCC
Confidence 44799999999 477 444444443 343
No 86
>PLN02160 thiosulfate sulfurtransferase
Probab=33.25 E-value=62 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=18.6
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|||..| .||... |.++...|.+
T Consensus 82 ~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 82 DDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 3799999999 687644 4455666764
No 87
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=33.09 E-value=62 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=18.1
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
+..|+|.|..|. |+.+..+|..++..|.+
T Consensus 50 ~~~ivl~c~~G~-~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGG-EDLAPRAARRLSELGYT 78 (92)
T ss_pred CCeEEEEeCCCC-chHHHHHHHHHHHcCcc
Confidence 447999999984 44333444455555654
No 88
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=32.98 E-value=17 Score=23.80 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.7
Q ss_pred ecCCCCCCcc
Q 014598 382 SCAHCEARLG 391 (422)
Q Consensus 382 ~CPkC~akLG 391 (422)
+||.|+++|=
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5999999985
No 89
>PRK00420 hypothetical protein; Validated
Probab=32.31 E-value=24 Score=30.83 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=14.7
Q ss_pred eecCCCCCCccceeecc-ccCC-CCCcc
Q 014598 381 LSCAHCEARLGYFNWSG-IQCS-CGSWI 406 (422)
Q Consensus 381 L~CPkC~akLGsf~w~G-~qCs-CG~wv 406 (422)
-+||.|+..|=.+ =.| .+|. ||.-+
T Consensus 24 ~~CP~Cg~pLf~l-k~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 24 KHCPVCGLPLFEL-KDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCCcceec-CCCceECCCCCCee
Confidence 4677777666443 234 4675 77644
No 90
>smart00400 ZnF_CHCC zinc finger.
Probab=32.19 E-value=40 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=23.9
Q ss_pred EEEecCCCCchHHHHHHHHHHHcCCChhchhhhh
Q 014598 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFI 171 (422)
Q Consensus 138 LVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i 171 (422)
..||.+ -+++.- ++.++|+..+++..||++.|
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 578885 345554 47888888899999998776
No 91
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=31.84 E-value=21 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=13.9
Q ss_pred ecCCCCCCccceeeccccCC-CCCc
Q 014598 382 SCAHCEARLGYFNWSGIQCS-CGSW 405 (422)
Q Consensus 382 ~CPkC~akLGsf~w~G~qCs-CG~w 405 (422)
.||+|+++|=. ....|+ ||+-
T Consensus 1 ~Cp~CG~~~~~---~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED---DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC---cCcchhhhCCc
Confidence 49999988831 234576 8764
No 92
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.53 E-value=23 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=13.3
Q ss_pred cceeecCCCCCCccce
Q 014598 378 EGKLSCAHCEARLGYF 393 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf 393 (422)
.|++.||.|++.|=.+
T Consensus 121 ~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 121 DGTFTCPRCGEELEED 136 (147)
T ss_pred CCcEECCCCCCEEEEc
Confidence 6889999999988544
No 93
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.41 E-value=19 Score=32.90 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=12.9
Q ss_pred ecCCCCCCccceee---ccccCC-CCCcc
Q 014598 382 SCAHCEARLGYFNW---SGIQCS-CGSWI 406 (422)
Q Consensus 382 ~CPkC~akLGsf~w---~G~qCs-CG~wv 406 (422)
.||+|+.|. +|+= .|-.|+ ||.-.
T Consensus 111 ~Cp~c~~r~-tf~eA~~~~F~Cp~Cg~~L 138 (158)
T TIGR00373 111 ICPNMCVRF-TFNEAMELNFTCPRCGAML 138 (158)
T ss_pred ECCCCCcEe-eHHHHHHcCCcCCCCCCEe
Confidence 377777554 2221 156776 77543
No 94
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=31.34 E-value=30 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.9
Q ss_pred cceeecCCCCCCc
Q 014598 378 EGKLSCAHCEARL 390 (422)
Q Consensus 378 ~GKL~CPkC~akL 390 (422)
.+++.||+|+..+
T Consensus 23 ~~~v~C~~C~~~~ 35 (38)
T TIGR02098 23 GGKVRCGKCGHVW 35 (38)
T ss_pred CCEEECCCCCCEE
Confidence 4589999998654
No 95
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=30.89 E-value=1.1e+02 Score=24.83 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=17.4
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|.|..| .||+.. +.++...|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~--~~~l~~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV--AQWLLRQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH--HHHHHHcCCc
Confidence 3799999998 576444 4444556664
No 96
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.70 E-value=40 Score=29.19 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=17.7
Q ss_pred ccceeecCCCCCCccceeeccccCC-CCCc
Q 014598 377 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 405 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G~qCs-CG~w 405 (422)
..++..|+.|+...-.-.+.-..|+ ||..
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 67 QEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred eCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 5677888888854332233335687 8843
No 97
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=29 Score=28.59 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=16.7
Q ss_pred eecCCCCCCccceeeccc---cCC-CC
Q 014598 381 LSCAHCEARLGYFNWSGI---QCS-CG 403 (422)
Q Consensus 381 L~CPkC~akLGsf~w~G~---qCs-CG 403 (422)
+.||.|+.-|=.-.=+|. +|+ |+
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCr 28 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCR 28 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCccc
Confidence 468999888877777774 675 53
No 98
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.03 E-value=31 Score=23.86 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=7.9
Q ss_pred eeecCCCCCC
Q 014598 380 KLSCAHCEAR 389 (422)
Q Consensus 380 KL~CPkC~ak 389 (422)
++.||+|+++
T Consensus 2 ~i~CP~C~~~ 11 (37)
T PF13719_consen 2 IITCPNCQTR 11 (37)
T ss_pred EEECCCCCce
Confidence 4789999953
No 99
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=27.68 E-value=47 Score=28.69 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=16.4
Q ss_pred ccceeecCCCCCCccceeeccccCC-CCCc
Q 014598 377 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 405 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G~qCs-CG~w 405 (422)
..++..|+.|+..-.. ......|+ ||..
T Consensus 67 vp~~~~C~~Cg~~~~~-~~~~~~CP~Cgs~ 95 (113)
T PRK12380 67 KPAQAWCWDCSQVVEI-HQHDAQCPHCHGE 95 (113)
T ss_pred eCcEEEcccCCCEEec-CCcCccCcCCCCC
Confidence 5678889999832221 11233587 8843
No 100
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=26.85 E-value=28 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=15.0
Q ss_pred ecCCCCCCccceeeccc
Q 014598 382 SCAHCEARLGYFNWSGI 398 (422)
Q Consensus 382 ~CPkC~akLGsf~w~G~ 398 (422)
.||.|++.==+.+|.|+
T Consensus 20 ~CP~Cgs~~~te~W~G~ 36 (64)
T COG2093 20 ICPVCGSTDLTEEWFGL 36 (64)
T ss_pred cCCCCCCcccchhhccE
Confidence 69999999669999995
No 101
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=26.79 E-value=64 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=20.8
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|.|..|..||.. ++++++..|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3799999998777765 56677777765
No 102
>KOG4784 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=52 Score=34.03 Aligned_cols=88 Identities=15% Similarity=0.327 Sum_probs=48.1
Q ss_pred CCCCceeccccceeeeccCCccc--CCCCCC----cchhhhhhhccCCCCC--CCCCCCC----ceeeec---ccccchh
Q 014598 307 NRTPAYRCKKCRRVVALQENVVD--HIPGEG----ETAFEWHKRKSGNRFN--RSDESEC----SSIFVE---PLRWMTA 371 (422)
Q Consensus 307 ~~~~~yrCrKCR~~Lf~~~~i~~--H~~~~~----~~~~~~~k~~~~~~~~--~~~~~~C----ss~Fie---pl~WM~~ 371 (422)
..+..++|.+|+..+-.+.++.. --|.++ ..++.=|+....+... -..+.+| .+||+- ..+|...
T Consensus 99 ~~~~s~~C~~C~e~ii~~r~~~~l~~lPSe~W~el~d~w~CH~~~p~~~s~~tl~PsE~~l~lG~sY~lin~~t~e~~~~ 178 (348)
T KOG4784|consen 99 DEPCSFHCLNCKEEIIGQRSYRSLNELPSENWTELPDCWSCHNDEPKNKSSLTLYPSENELYLGDSYLLINLATGEGVKT 178 (348)
T ss_pred CCCceeEeccCcceEeccchhhhhhhcChhhhhhcCceecccCCccccccccccccCcCceEeeccEEEEEcccccceec
Confidence 34679999999999876655421 112210 0111112200000001 1123333 478873 3467765
Q ss_pred hhcccccceeecCCCCCCccceeecc
Q 014598 372 VEEGALEGKLSCAHCEARLGYFNWSG 397 (422)
Q Consensus 372 ~~~g~~~GKL~CPkC~akLGsf~w~G 397 (422)
.. ...++.|-+|.+-||.+...+
T Consensus 179 ~~---~~d~~~C~rC~~~lg~~~~~~ 201 (348)
T KOG4784|consen 179 IA---GNDRVLCSRCKRCLGLFITKD 201 (348)
T ss_pred cC---CCCchhhhhhHhhcCcccccc
Confidence 32 367899999999999997643
No 103
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.63 E-value=15 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=15.0
Q ss_pred eeccccceeeeccCCcccC
Q 014598 312 YRCKKCRRVVALQENVVDH 330 (422)
Q Consensus 312 yrCrKCR~~Lf~~~~i~~H 330 (422)
|+|..|.+..-+..++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 7899999988776666665
No 104
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=25.59 E-value=1.2e+02 Score=25.24 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=13.0
Q ss_pred ceEEEecCCCCchHHHH
Q 014598 136 GVLVHCFAGVSRSAAII 152 (422)
Q Consensus 136 ~VLVHC~aGvsRS~tvv 152 (422)
.|+|||..|-.||+..+
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 79999998667876543
No 105
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=25.52 E-value=35 Score=34.18 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=23.0
Q ss_pred ccceeecCCCCCCcccee---------ec-cccCCCCCccccceee
Q 014598 377 LEGKLSCAHCEARLGYFN---------WS-GIQCSCGSWITPAFQL 412 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~---------w~-G~qCsCG~wv~Paf~l 412 (422)
-.-||+|-+|+|+||--| |. ..-|+=.+-+-|.+-|
T Consensus 166 pNfklhCsfCnA~lGlpn~~s~~kl~r~~k~~I~~g~tKihP~~di 211 (321)
T COG5629 166 PNFKLHCSFCNARLGLPNDSSIRKLFRYNKEVIPNGCTKIHPHEDL 211 (321)
T ss_pred CCcceeeehhhhhhCCCCchhhhhhhhcchheecCCCcccCchHHH
Confidence 356999999999998644 43 2345533355555443
No 106
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=25.47 E-value=30 Score=30.65 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.0
Q ss_pred CCceeccccceeeeccCCcccCCC
Q 014598 309 TPAYRCKKCRRVVALQENVVDHIP 332 (422)
Q Consensus 309 ~~~yrCrKCR~~Lf~~~~i~~H~~ 332 (422)
...|+|+.|+.-|+...+++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 358999999999999999998753
No 107
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=25.38 E-value=24 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=8.8
Q ss_pred ecCCCCCCccceee-ccccCC-CCC
Q 014598 382 SCAHCEARLGYFNW-SGIQCS-CGS 404 (422)
Q Consensus 382 ~CPkC~akLGsf~w-~G~qCs-CG~ 404 (422)
.||+|+++.=.-.. ..++|+ ||.
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS-
T ss_pred ccCcCCccccCCCCcCEeECCCCcC
Confidence 57777766633333 124664 553
No 108
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=25.37 E-value=47 Score=32.92 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 143 AGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 143 aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
=|+|||++-++|-|+. |++.++|.++-.-.-
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~fSFlls 190 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEFSFLLA 190 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 5999998877776653 788888876654443
No 109
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=25.21 E-value=47 Score=33.31 Aligned_cols=31 Identities=45% Similarity=0.558 Sum_probs=22.9
Q ss_pred CCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 143 AGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 143 aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
=|+|||++-++|-|+. |++.++|.++-.-.-
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~fSFlls 196 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARFSFLLA 196 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 5999998877776654 899998876654443
No 110
>PHA02540 61 DNA primase; Provisional
Probab=25.13 E-value=80 Score=32.67 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=31.3
Q ss_pred CceEEEec-CCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 135 GGVLVHCF-AGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 135 g~VLVHC~-aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
|...-||+ +|.+.. ++.|||...+++..||++.+....
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 36899998 677765 689999999999999998776655
No 111
>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=61 Score=29.34 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.7
Q ss_pred CCCceeccccceeeeccCC
Q 014598 308 RTPAYRCKKCRRVVALQEN 326 (422)
Q Consensus 308 ~~~~yrCrKCR~~Lf~~~~ 326 (422)
....|.|.-|...||.+++
T Consensus 39 ~~GiY~c~~cg~pLF~S~~ 57 (140)
T COG0229 39 EKGIYVCIVCGEPLFSSED 57 (140)
T ss_pred CCceEEeecCCCccccccc
Confidence 4579999999999998875
No 112
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.04 E-value=29 Score=32.43 Aligned_cols=12 Identities=8% Similarity=-0.053 Sum_probs=5.7
Q ss_pred HHHHHHHHHHcC
Q 014598 240 FLEQLKMFEEMG 251 (422)
Q Consensus 240 f~~qL~~~~~~~ 251 (422)
..+.|..+++.|
T Consensus 53 VRk~L~~L~e~g 64 (178)
T PRK06266 53 VRKILYKLYDAR 64 (178)
T ss_pred HHHHHHHHHHCC
Confidence 344555555443
No 113
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.96 E-value=3.8e+02 Score=22.19 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCceEEEecCCCCchHHHHHHHHHHHcCCChh
Q 014598 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (422)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~~~ 165 (422)
+|.+.++|+...+.|+-++...-.-+||..-.+..| ...|++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCC
Confidence 678889999999999766666777789989888888 66788765
No 114
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=24.93 E-value=48 Score=32.88 Aligned_cols=32 Identities=44% Similarity=0.558 Sum_probs=24.0
Q ss_pred cCCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 142 FAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 142 ~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
.=|+|||++-++|-++. |++.++|.++-.-.-
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~fSFlls 190 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARFSFLLS 190 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 46999999988886664 889998876655443
No 115
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.71 E-value=50 Score=39.67 Aligned_cols=25 Identities=28% Similarity=0.780 Sum_probs=14.3
Q ss_pred ceeecCCCCCCccceeeccccCC-CCCcccc
Q 014598 379 GKLSCAHCEARLGYFNWSGIQCS-CGSWITP 408 (422)
Q Consensus 379 GKL~CPkC~akLGsf~w~G~qCs-CG~wv~P 408 (422)
|...||+|++-.-. ..|+ ||....|
T Consensus 666 ~~rkCPkCG~~t~~-----~fCP~CGs~te~ 691 (1337)
T PRK14714 666 GRRRCPSCGTETYE-----NRCPDCGTHTEP 691 (1337)
T ss_pred EEEECCCCCCcccc-----ccCcccCCcCCC
Confidence 45778888764321 1565 6665544
No 116
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.33 E-value=52 Score=28.49 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=16.9
Q ss_pred ccceeecCCCCCCccceeeccccCC-CCCc
Q 014598 377 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 405 (422)
Q Consensus 377 ~~GKL~CPkC~akLGsf~w~G~qCs-CG~w 405 (422)
..++..|+.|+... ........|+ ||.+
T Consensus 67 ~p~~~~C~~Cg~~~-~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 67 EPVECECEDCSEEV-SPEIDLYRCPKCHGI 95 (115)
T ss_pred eCcEEEcccCCCEE-ecCCcCccCcCCcCC
Confidence 46778899998332 2222245685 8854
No 117
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.19 E-value=79 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=16.0
Q ss_pred ceEEEecCCCCchHHHHHHHHHHH
Q 014598 136 GVLVHCFAGVSRSAAIITAYLMRT 159 (422)
Q Consensus 136 ~VLVHC~aGvsRS~tvv~AYLm~~ 159 (422)
+|+|.|-+|++ |++++.+=+-+.
T Consensus 2 kilvvCg~G~g-tS~ml~~ki~~~ 24 (87)
T cd05567 2 KIVFACDAGMG-SSAMGASVLRKK 24 (87)
T ss_pred EEEEECCCCcc-HHHHHHHHHHHH
Confidence 69999999988 445555544443
No 118
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=23.06 E-value=55 Score=32.66 Aligned_cols=31 Identities=42% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCCCchHHHHHHHHHHHcCCChhchhhhhhhcc
Q 014598 143 AGVSRSAAIITAYLMRTEQLSSEGLNKFIFSLE 175 (422)
Q Consensus 143 aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~r 175 (422)
=|+|||++-+.|-|+ .|++.++|.++-.-.-
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~fSFLls 194 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEFSFLLA 194 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 599999887777655 3888888876544443
No 119
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.83 E-value=41 Score=26.28 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=15.0
Q ss_pred ecCCCCCCccceeeccc
Q 014598 382 SCAHCEARLGYFNWSGI 398 (422)
Q Consensus 382 ~CPkC~akLGsf~w~G~ 398 (422)
.||.|++.-=+-+|.|.
T Consensus 17 ~CP~Cgs~~~T~~W~G~ 33 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDL 33 (61)
T ss_pred cCCCCcCCccccccccE
Confidence 49999998888999995
No 120
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=22.35 E-value=94 Score=24.92 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=18.0
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
+..|+|+|..| .||.. + |..|...|.+
T Consensus 56 ~~~iv~~c~~G-~rs~~-a-a~~L~~~G~~ 82 (95)
T cd01534 56 GARIVLADDDG-VRADM-T-ASWLAQMGWE 82 (95)
T ss_pred CCeEEEECCCC-ChHHH-H-HHHHHHcCCE
Confidence 34799999998 47754 3 3344666765
No 121
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.33 E-value=45 Score=23.89 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.6
Q ss_pred eeecCCCCCCcc
Q 014598 380 KLSCAHCEARLG 391 (422)
Q Consensus 380 KL~CPkC~akLG 391 (422)
.+.||.|++++=
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 579999997763
No 122
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=22.31 E-value=17 Score=27.78 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=13.1
Q ss_pred ceeccccceeeeccCC
Q 014598 311 AYRCKKCRRVVALQEN 326 (422)
Q Consensus 311 ~yrCrKCR~~Lf~~~~ 326 (422)
.+||++|.++|+..+-
T Consensus 4 tiRC~~CnKlLa~a~~ 19 (60)
T COG4416 4 TIRCAKCNKLLAEAEG 19 (60)
T ss_pred eeehHHHhHHHHhccc
Confidence 5899999999986553
No 123
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=22.25 E-value=47 Score=38.76 Aligned_cols=32 Identities=22% Similarity=0.654 Sum_probs=25.4
Q ss_pred cceeecCCCCCCccceeeccccCC-CCCccccce
Q 014598 378 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 410 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf~w~G~qCs-CG~wv~Paf 410 (422)
.-+.-|.||++|-=.-=-+| +|. ||..+.+.+
T Consensus 1010 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV 1042 (1095)
T TIGR00354 1010 RQEVRCTKCNTKYRRIPLVG-KCLKCGNNLTLTV 1042 (1095)
T ss_pred ccceeecccCCccccCCCCC-cccccCCeEEEEE
Confidence 45789999999877766778 896 999986554
No 124
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.24 E-value=1.2e+02 Score=28.57 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHHHhcC-ceEEEecCCCCchHH---HHHHHHHHHc
Q 014598 115 ENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAA---IITAYLMRTE 160 (422)
Q Consensus 115 ~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aGvsRS~t---vv~AYLm~~~ 160 (422)
+.+.+.+.++.+.|-+++++| +||+ | |+++|++ -.+|-|.-++
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSaadAqHfaael~gRf 67 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLA-C--GNGGSAADAQHFAAELTGRF 67 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEE-E--CCCcchhhHHHHHHHHhhHH
Confidence 556777888888888899888 5665 3 7778866 3455555444
No 125
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.07 E-value=44 Score=34.20 Aligned_cols=24 Identities=38% Similarity=0.975 Sum_probs=18.0
Q ss_pred cceeecCCCCCCccceeeccccCCCCC
Q 014598 378 EGKLSCAHCEARLGYFNWSGIQCSCGS 404 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf~w~G~qCsCG~ 404 (422)
+-+-.||+|+.. |-+ .|.+|+|=.
T Consensus 96 ~~~y~Cp~C~dt-G~i--~~~~C~C~~ 119 (329)
T PRK06835 96 EMKYTCPKCKDT-GFI--NGKKCSCYK 119 (329)
T ss_pred CCCCCCCCCCCC-CCc--CCccccchh
Confidence 445689999987 655 467999964
No 126
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=22.04 E-value=46 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.8
Q ss_pred ceeecCCCCCCc
Q 014598 379 GKLSCAHCEARL 390 (422)
Q Consensus 379 GKL~CPkC~akL 390 (422)
+.+.||.|+.|+
T Consensus 18 ~~irC~~CG~rI 29 (44)
T smart00659 18 DVVRCRECGYRI 29 (44)
T ss_pred CceECCCCCceE
Confidence 458999999886
No 127
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=21.93 E-value=88 Score=26.20 Aligned_cols=26 Identities=27% Similarity=-0.101 Sum_probs=18.4
Q ss_pred ceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 136 ~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
.|+|+|..| +++++.++.+| +..|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 799999998 66666665444 555765
No 128
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.82 E-value=58 Score=29.64 Aligned_cols=26 Identities=27% Similarity=0.764 Sum_probs=17.9
Q ss_pred cceeecCCCCCCccceeecc--ccCC-CCC
Q 014598 378 EGKLSCAHCEARLGYFNWSG--IQCS-CGS 404 (422)
Q Consensus 378 ~GKL~CPkC~akLGsf~w~G--~qCs-CG~ 404 (422)
-|.+.|-+|+.++ .|+-.+ ..|+ ||.
T Consensus 110 ~G~l~C~~Cg~~~-~~~~~~~l~~Cp~C~~ 138 (146)
T PF07295_consen 110 PGTLVCENCGHEV-ELTHPERLPPCPKCGH 138 (146)
T ss_pred CceEecccCCCEE-EecCCCcCCCCCCCCC
Confidence 5788888888887 555555 3665 664
No 129
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=21.69 E-value=78 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=25.3
Q ss_pred HhcCceEEEecCCCCchHHHHHHHHHHHcCCC-hhchh
Q 014598 132 RKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGLN 168 (422)
Q Consensus 132 ~~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~-~~eA~ 168 (422)
..+++|+=||+.| +-|+.||+...... -+||+
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl 54 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGL 54 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHH
Confidence 3467999999998 56899999988775 56655
No 130
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.34 E-value=24 Score=27.47 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.6
Q ss_pred CCceecccccee
Q 014598 309 TPAYRCKKCRRV 320 (422)
Q Consensus 309 ~~~yrCrKCR~~ 320 (422)
...|||.|||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 468999999973
No 131
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=21.25 E-value=45 Score=26.67 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=13.2
Q ss_pred ceeccccceeeeccCCcccCC
Q 014598 311 AYRCKKCRRVVALQENVVDHI 331 (422)
Q Consensus 311 ~yrCrKCR~~Lf~~~~i~~H~ 331 (422)
.||| +|+|.|...++.-.|.
T Consensus 3 ifrC-~Cgr~lya~e~~kTkk 22 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTKK 22 (68)
T ss_dssp EEEE-TTS--EEEETT-SEEE
T ss_pred EEEe-cCCCEEEecCCcceeE
Confidence 6899 7999998887765553
No 132
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=20.91 E-value=1.1e+02 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=18.0
Q ss_pred cCceEEEecCCCCchHHHHHHHHHHHcCC
Q 014598 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (422)
Q Consensus 134 ~g~VLVHC~aGvsRS~tvv~AYLm~~~~~ 162 (422)
+..|+|+|..|. ||.. +|..|...|.
T Consensus 72 ~~~ivv~C~~G~-rs~~--aa~~L~~~G~ 97 (122)
T cd01526 72 DSPIYVVCRRGN-DSQT--AVRKLKELGL 97 (122)
T ss_pred CCcEEEECCCCC-cHHH--HHHHHHHcCC
Confidence 347999999995 8753 3345666677
No 133
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.57 E-value=45 Score=31.39 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=6.2
Q ss_pred ceeccccceee
Q 014598 311 AYRCKKCRRVV 321 (422)
Q Consensus 311 ~yrCrKCR~~L 321 (422)
...|+|||...
T Consensus 61 li~~~k~rd~~ 71 (176)
T COG1675 61 LISYRKKRDEE 71 (176)
T ss_pred ceEEEeecccC
Confidence 45566666543
No 134
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=20.42 E-value=2e+02 Score=22.67 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=16.9
Q ss_pred CceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 135 g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
..|+|+|..| .||. .+|..++..|.+
T Consensus 57 ~~ivv~c~~g-~~s~--~a~~~l~~~G~~ 82 (96)
T cd01444 57 RPVVVYCYHG-NSSA--QLAQALREAGFT 82 (96)
T ss_pred CCEEEEeCCC-ChHH--HHHHHHHHcCCc
Confidence 3799999977 3443 345566666654
No 135
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=20.38 E-value=3.5e+02 Score=23.05 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=14.6
Q ss_pred HHhhhcCCCeEEEEccc
Q 014598 20 ILQNGSSEITHMLSVLS 36 (422)
Q Consensus 20 ~~~L~~~GIt~VLnl~~ 36 (422)
++.|+..||+.||++..
T Consensus 6 ~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHCCCeEEEEECC
Confidence 35789999999999976
No 136
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=20.26 E-value=72 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=24.4
Q ss_pred eEEEecCCCCchHHHHHHHHHHHcCCChhchhhhhhhc
Q 014598 137 VLVHCFAGVSRSAAIITAYLMRTEQLSSEGLNKFIFSL 174 (422)
Q Consensus 137 VLVHC~aGvsRS~tvv~AYLm~~~~~~~~eA~~~i~~~ 174 (422)
=.-||++ -+.++- ++.++|...+++..||+++|...
T Consensus 53 ~~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 53 NRFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp TEEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHH
T ss_pred CeEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHH
Confidence 3789995 466654 47778999999999999888764
No 137
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=20.04 E-value=1.9e+02 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=18.7
Q ss_pred hcCceEEEecCCCCchHHHHHHHHHHHcCCC
Q 014598 133 KEGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (422)
Q Consensus 133 ~~g~VLVHC~aGvsRS~tvv~AYLm~~~~~~ 163 (422)
.+..|+|+|..|. ||.. ++..|+..|.+
T Consensus 57 ~~~~ivv~c~~g~-~s~~--a~~~L~~~G~~ 84 (108)
T PRK00162 57 FDTPVMVMCYHGN-SSQG--AAQYLLQQGFD 84 (108)
T ss_pred CCCCEEEEeCCCC-CHHH--HHHHHHHCCch
Confidence 3447999999995 6533 34456666765
Done!