Query 014600
Match_columns 422
No_of_seqs 254 out of 2357
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-22 4.3E-27 203.0 17.3 308 26-357 30-413 (451)
2 3o7q_A L-fucose-proton symport 99.9 4.1E-20 1.4E-24 184.2 29.5 251 25-287 27-296 (438)
3 2gfp_A EMRD, multidrug resista 99.8 6.5E-19 2.2E-23 172.2 15.1 228 32-286 8-235 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.7 8.5E-15 2.9E-19 148.1 29.4 172 27-223 16-196 (491)
5 2cfq_A Lactose permease; trans 99.6 3.8E-16 1.3E-20 155.4 6.9 75 25-100 8-83 (417)
6 2xut_A Proton/peptide symporte 99.5 3.1E-13 1.1E-17 137.8 20.2 172 27-222 15-197 (524)
7 4gc0_A D-xylose-proton symport 99.4 1.1E-11 3.9E-16 124.9 22.0 164 58-228 54-224 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.1 9E-10 3.1E-14 109.4 13.5 175 26-223 254-433 (451)
9 2cfq_A Lactose permease; trans 98.8 3.3E-08 1.1E-12 97.8 13.7 162 42-228 238-404 (417)
10 3o7q_A L-fucose-proton symport 98.7 8.3E-08 2.8E-12 94.8 13.2 145 27-189 261-407 (438)
11 4gc0_A D-xylose-proton symport 98.6 2.5E-07 8.5E-12 92.9 13.1 170 44-228 297-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.6 4.2E-08 1.4E-12 98.7 6.2 169 41-227 300-475 (491)
13 2gfp_A EMRD, multidrug resista 97.8 2.3E-06 7.8E-11 82.7 -1.3 141 29-183 204-346 (375)
14 2xut_A Proton/peptide symporte 97.7 7.1E-05 2.4E-09 75.6 9.0 121 60-187 336-465 (524)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.89 E-value=1.3e-22 Score=203.02 Aligned_cols=308 Identities=12% Similarity=0.029 Sum_probs=212.7
Q ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHH
Q 014600 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (422)
Q Consensus 26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~ 105 (422)
......+.+...........+++.+.++. .++.++|++.++..+..++..|+.|+++||+||||. ++.+.++.+++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHHHHH
Confidence 34445555555555556667788888888 999999999999999999999999999999999886 6677787777766
Q ss_pred HhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014600 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (422)
Q Consensus 106 ~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~ 185 (422)
++.. .|.. .+ +.+ .+++..++.+++.+....+..++++|+.+ +++|++..++......+|.++++.+++.
T Consensus 108 ~~~~--~~~~-~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 108 FMGF--VPWA-TS--SIA----VMFVLLFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHH--CHHH-HS--SSS----HHHHHHHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHh--hhhc-cc--cHH----HHHHHHHHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 1100 11 122 22333457888888889999999999986 6899999999999999999988877766
Q ss_pred HHhhccCCCCCchHHH-HHHHHHHHHHHHHHHHhhhhccccCccccccc---CC---------------Ccchhhh-HHH
Q 014600 186 VFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG---------------NSHARIS-WAY 245 (422)
Q Consensus 186 l~~~~~~~g~~~~~~~-~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~---~~---------------~~~~~~~-~~~ 245 (422)
+... .+ |++.+++.+++.++..++.++..||++.+++. ++ +.+.++. .++
T Consensus 178 l~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 178 GMAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp HHHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHH
T ss_pred HHHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHH
Confidence 5543 24 88888877777777666666777775432110 00 1111111 467
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCccchhHhHHH------------HH-------------HHHHHH
Q 014600 246 WFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP------------AI-------------IYICSF 300 (422)
Q Consensus 246 ~~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y~~~~~~l~~~~~~~iP------------~~-------------~~~~~~ 300 (422)
.+|||.++...+..++..........++|.|+.+..+++....+.+- .. ....+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 327 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 78899988888777777777888899999999988787664321000 00 000111
Q ss_pred HHHH-HHH-------------------HHH----------hhhhhhhhcCccccccceehhhHHHHHH-HHHHHHHHHHH
Q 014600 301 IVSI-LLQ-------------------VTG----------ISMQNVLVGEDLSGCAFVCGTLSFLDKM-SCGIAVYVLQS 349 (422)
Q Consensus 301 ~~~~-~~~-------------------v~~----------~~~~~~~~g~r~~g~~~~~s~~~~~~K~-~~a~~~~i~g~ 349 (422)
.+.. ++- +.+ ..+..+..++++.|. .+|..+.+.++ |..+++.+.|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT--AAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 001 122345566777888 99999999999 99999999999
Q ss_pred hHhhCCCc
Q 014600 350 YQSMSPTV 357 (422)
Q Consensus 350 ~l~~~Gy~ 357 (422)
+.+..||.
T Consensus 406 l~~~~g~~ 413 (451)
T 1pw4_A 406 TVDFFGWD 413 (451)
T ss_dssp HHHSSCSH
T ss_pred HHHhcCcH
Confidence 99988864
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.87 E-value=4.1e-20 Score=184.19 Aligned_cols=251 Identities=12% Similarity=-0.021 Sum_probs=173.6
Q ss_pred eeeeeeccchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (422)
Q Consensus 25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~ 104 (422)
..+......+...........+++.+..+.|++..++|++.++..+..++..|+.|+++||+||||. ++.+.++.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~ 105 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHHHHH
Confidence 3344444455556666666667777666669999999999999999999999999999999999988 557778877776
Q ss_pred HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (422)
Q Consensus 105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~ 184 (422)
.+.+. .. ..+ +.+ .+++.+++.+++.+....+..++++|+.+ +++|++..++.+....+|.++++.++.
T Consensus 106 ~~~~~--~~--~~~--~~~----~l~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 106 ALFWP--AA--EIM--NYT----LFLVGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHH--HH--HTT--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHh--cc--ccc--cHH----HHHHHHHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65421 00 111 122 22333457889999999999999999986 689999999999999999999888876
Q ss_pred HHH-hhccCCCC---------------CchHHHHHHHHHHHHHHHHHHHhhhhc-cccCccccc-ccCCCcchhhhHHHH
Q 014600 185 IVF-SVSTAKTH---------------ADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISWAYW 246 (422)
Q Consensus 185 ~l~-~~~~~~g~---------------~~~~~~~~~~~~i~~~i~~i~~~i~~~-~~~E~~~~~-~~~~~~~~~~~~~~~ 246 (422)
.+. ...+..+. .+...+|++.+.+.+.+.++..++.++ ..||++.++ +++++.+.++.++++
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL 254 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHH
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHH
Confidence 666 22110000 001123888887666655554444333 234433222 222334556778899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhhccCccchh
Q 014600 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSA 287 (422)
Q Consensus 247 ~~n~~f~~~~~~~~~~~~~~~~~~~y~~~y-~~~~~~l~~~~ 287 (422)
+|||.++...+..++..........|.+.| ..+..+.+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 296 (438)
T 3o7q_A 255 ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF 296 (438)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH
Confidence 999999887777777777777888999999 77776776543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.79 E-value=6.5e-19 Score=172.19 Aligned_cols=228 Identities=13% Similarity=0.046 Sum_probs=169.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCc
Q 014600 32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (422)
Q Consensus 32 g~~~~~~~~~~~~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~ 111 (422)
..+..........+.++.+.++.|.++.++|++.++..+...+..|+.|+++||+||||. ++.+....+++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-- 84 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV-ILVGMSIFMLATLVAVT-- 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC-CHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHHH--
Confidence 334455555666667776665569999999999999999999999999999999999988 45677777777655431
Q ss_pred cCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014600 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (422)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~ 191 (422)
.+ +. ..+.+...+.+++.+.......++..|+.+ ++||++..+..+....+|..+++.+++.+.+
T Consensus 85 -----~~--~~----~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--- 149 (375)
T 2gfp_A 85 -----TS--SL----TVLIAASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLDT--- 149 (375)
T ss_dssp -----HH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---
T ss_pred -----hc--cH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---
Confidence 11 11 122333457888888888899999999986 5789999999999999888887766544321
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccCCCcchhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Q 014600 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQA 271 (422)
Q Consensus 192 ~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~~~~~~~~~~~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~~~~~ 271 (422)
..+|++.+.+.+++.++..++..+..||++.+++ ++++.++.+++++|||+++...+..++..........
T Consensus 150 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 150 -------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 3589998888888777777666777788654322 2223455667889999988877777777777778888
Q ss_pred HHHHHhhhccCccch
Q 014600 272 YLAFYVINDLRMGQS 286 (422)
Q Consensus 272 y~~~y~~~~~~l~~~ 286 (422)
+.|.|..+..+.+..
T Consensus 221 ~~~~~~~~~~g~~~~ 235 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSM 235 (375)
T ss_dssp HCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHH
Confidence 999998886666554
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.70 E-value=8.5e-15 Score=148.11 Aligned_cols=172 Identities=11% Similarity=-0.085 Sum_probs=125.2
Q ss_pred eeeeccchhHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHHHHHhhhhhhhhhhhhcc-cCCchhHHHHHHHH
Q 014600 27 LYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVL 99 (422)
Q Consensus 27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~------~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr-~Grrrp~ll~g~i~ 99 (422)
+......+.....+....++++.|+++ .|++..++|++.++..+..++..|+.|+++|| +||||. +..+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-~~~~~~~ 94 (491)
T 4aps_A 16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-VFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHHHH
Confidence 334445566666666777888888876 59999999999999999999999999999999 899988 5567777
Q ss_pred HHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccc--hhhHHHHHHHHHHHHHH
Q 014600 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVANL 177 (422)
Q Consensus 100 ~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~e--R~~l~~~~~~~~~ig~~ 177 (422)
.+++..++.. ++ +.+ .+.+..++.+++.+....+..++++|+.+ +++ |++..+..+...++|..
T Consensus 95 ~~~~~~~~~~-------~~--~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~ 160 (491)
T 4aps_A 95 IMLGHIVLAL-------PF--GAS----ALFGSIILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLGAF 160 (491)
T ss_dssp HHHHHHHHHS-------CC--STT----HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------hh--hHH----HHHHHHHHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHHHH
Confidence 7777655432 11 122 12223356788888888899999999987 456 66677777788888888
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (422)
Q Consensus 178 l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~ 223 (422)
+++.+++.+.+ ..+|++.+.+.++..+++.++.++.
T Consensus 161 ~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 161 IAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777665543 2378888877766555554444433
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=3.8e-16 Score=155.43 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred eeeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHH
Q 014600 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (422)
Q Consensus 25 ~~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~ 100 (422)
+........+.....+....++++.|+++. |+++.++|.+.++..+...+..|+.|+++||+||||+++ .+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~-~~~~~~ 83 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL-WIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH-HHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 333344444444455556667899999986 999999999999999999999999999999999999965 444433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.53 E-value=3.1e-13 Score=137.81 Aligned_cols=172 Identities=12% Similarity=-0.018 Sum_probs=123.2
Q ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHh-C------CChhHHHHHHHHHHHHhhhhhhhhhhhhccc-CCchhHHHHHHH
Q 014600 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSV 98 (422)
Q Consensus 27 ~~y~~g~~~~~~~~~~~~~~l~~f~t~~-g------ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~-Grrrp~ll~g~i 98 (422)
+......+.....+....++++.|+++. | +++.++|++.++..+...+..|+.|+++||+ ||||. +..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~ 93 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSL 93 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHH
Confidence 3445556666777777778899999886 9 9999999999999999999999999999999 99988 456777
Q ss_pred HHHHHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHH---HHHHHHHH
Q 014600 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVA 175 (422)
Q Consensus 99 ~~~i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~---~~~~~~ig 175 (422)
..+++..++.. .+ .+.+ .+.+..++.+++.+....+..++++|..+ +++|++..+. .+...++|
T Consensus 94 ~~~~~~~~~~~-------~~-~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 94 IYCVGHAFLAI-------FE-HSVQ----GFYTGLFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp HHHHHHHHHHH-------TS-SCHH----HHHHHHHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------hc-ccHH----HHHHHHHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHH
Confidence 77776655432 11 0122 12223456788888888999999999987 5677655544 77777888
Q ss_pred HHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhc
Q 014600 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (422)
Q Consensus 176 ~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~ 222 (422)
..+++.+.+.+.+ ..+|++.+.+.+++.++..++.++
T Consensus 161 ~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 161 SFFASLSMPLLLK----------NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTSTHHHH----------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655544432 236888887776666655444433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.43 E-value=1.1e-11 Score=124.94 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccC-----C--ccchhhhHHHH
Q 014600 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----T--STLKVETISYC 130 (422)
Q Consensus 58 ~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~-----~--~~~~~~~~~~~ 130 (422)
....|++.++..+..+++.++.|+++||+|||+. ++++.++..++.++.-. .+..... . .........++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-l~~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-LKIAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 4577888888888899999999999999999988 45677777776554321 1100000 0 00011122344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Q 014600 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 210 (422)
Q Consensus 131 ~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~ 210 (422)
+.+++.+++.+.......+++.|..+ +++|++..+....+..+|.+++..++.......... ......|++...+..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHHhhhhh
Confidence 55568888888888888999999986 789999999999888888888776665444322110 112346777766655
Q ss_pred HHHHHHHhhhhccccCcc
Q 014600 211 FIGCCFVGIFLSRTEEPR 228 (422)
Q Consensus 211 ~i~~i~~~i~~~~~~E~~ 228 (422)
+..++. ++..+..+|.+
T Consensus 208 ~~~~~~-~~~~~~~peSp 224 (491)
T 4gc0_A 208 IPALLF-LMLLYTVPESP 224 (491)
T ss_dssp HHHHHH-HHHGGGSCCCH
T ss_pred hhhhhh-hhhhhcCCCCh
Confidence 555443 34455667754
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.07 E-value=9e-10 Score=109.38 Aligned_cols=175 Identities=7% Similarity=-0.051 Sum_probs=120.7
Q ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhccc--CCchhHHHHHHHHHH-
Q 014600 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA- 101 (422)
Q Consensus 26 ~~~y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~--Grrrp~ll~g~i~~~- 101 (422)
.+...+..+...........+++.|+++. |.++.++|.+..+..+...+..++.|+++||+ |||+..+ .+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~~ 332 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG-VFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH-HHHHHHHH
Confidence 34444555556666666778999999996 99999999999999999999999999999999 8887754 4444444
Q ss_pred HHHHHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHH-HHHHHH
Q 014600 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLY 180 (422)
Q Consensus 102 i~~~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~i-g~~l~~ 180 (422)
++..++.. .++.+.+ . ..+...+.+.+.+....+..++..|..+ +++|++..+..+....+ |..+++
T Consensus 333 ~~~~~~~~-------~~~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~~ 400 (451)
T 1pw4_A 333 IATIVYWM-------NPAGNPT-V---DMICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAAS 400 (451)
T ss_dssp HHHHHTTS-------CCTTCHH-H---HHHHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------hcccCHH-H---HHHHHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 55444331 1111222 1 1122235666666777777888999876 57899999999999998 988888
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014600 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (422)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~ 223 (422)
.+.+.+.+.. +|...+.+.+++.+++.++.++.
T Consensus 401 ~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 401 AIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666532 45555665555555555444443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.82 E-value=3.3e-08 Score=97.80 Aligned_cols=162 Identities=11% Similarity=0.050 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHh-C---CChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCcccc
Q 014600 42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (422)
Q Consensus 42 ~~~~~l~~f~t~~-g---ls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~ 117 (422)
.....++.|+++. + .+....|.+..+..+...+..++.|+++||+||||. +..+....++.+.++.. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~~~~~~~~~-------~ 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSSF-------A 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHTT-------C
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHH-------h
Confidence 3334567777775 4 335567888888888888899999999999999887 44566666665433221 1
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014600 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (422)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~-~~~~~ig~~l~~~~~~~l~~~~~~~g~~ 196 (422)
+ +.+ . ..+...+.+.++.....+..++.+|..+ ++.|++..+.. +....+|+.+++.+.+.+.+.
T Consensus 310 ~--~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~------- 375 (417)
T 2cfq_A 310 T--SAL-E---VVILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------- 375 (417)
T ss_dssp C--SHH-H---HHHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------
T ss_pred c--cHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------
Confidence 1 111 1 1111123455556666667788899876 57788877763 556667777777666555432
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 014600 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (422)
Q Consensus 197 ~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~~ 228 (422)
.++...+.+.++++++..++.++..||++
T Consensus 376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 376 ---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 25666666666777776666666667654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.73 E-value=8.3e-08 Score=94.79 Aligned_cols=145 Identities=12% Similarity=-0.001 Sum_probs=98.9
Q ss_pred eeeeccchhHHHHHHHHHHHHHHH-HHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHH
Q 014600 27 LYYGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (422)
Q Consensus 27 ~~y~~g~~~~~~~~~~~~~~l~~f-~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~ 104 (422)
.......+...........+++.| .++. |.++.++|.+..+..+...+..++.|+++||+||||.. ..+.+..+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-~~~~~~~~~~~ 339 (438)
T 3o7q_A 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-AAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHH
Confidence 333444445555556667889999 8888 99999999999999999999999999999999998874 45666666665
Q ss_pred HHhhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014600 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (422)
Q Consensus 105 ~~lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~ 184 (422)
.++.. .+ +.. .... ..+.+++++.......++..|..+ ++|+...++.. ...+|+.+++.+.+
T Consensus 340 ~~~~~-------~~--~~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 340 LISAF-------AG--GHV-GLIA----LTLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHHH-------CC--HHH-HHHH----HHHHHHHHTTHHHHHHHHHHSSCG--GGHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHHH-------cC--CcH-HHHH----HHHHHHHHHHHHHHHHHHHHhhcc--ccccchhhHHH-HHHHHHHHHHHHHH
Confidence 44332 11 111 1111 135666777666677777777665 34777777665 55677777776666
Q ss_pred HHHhh
Q 014600 185 IVFSV 189 (422)
Q Consensus 185 ~l~~~ 189 (422)
.+.+.
T Consensus 403 ~l~~~ 407 (438)
T 3o7q_A 403 FVSDA 407 (438)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.62 E-value=2.5e-07 Score=92.95 Aligned_cols=170 Identities=12% Similarity=-0.002 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHHHhhcCccCccccCCccch
Q 014600 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (422)
Q Consensus 44 ~~~l~~f~t~~gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~~~i~~~~lf~~~~p~~~~~~~~~~ 123 (422)
..|.+.+..+.+.+.........+..+...+..++.++++||+|||+.. +.+....+++...+... . .... ..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~--~---~~~~-~~ 369 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTA--F---YTQA-PG 369 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHH--H---HTTC-CH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHH--H---hccc-ch
Confidence 3444445555588888777777888888889999999999999999884 45666666554433210 0 0111 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-hhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHH
Q 014600 124 VETISYCVFAAIFNVGWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (422)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~-p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~g~~~~~~~~ 202 (422)
+..+.. ..++..+++.... ..+.+.+|+.+ .+.|++..++....+.+++.+++.+.+.+..... .....++
T Consensus 370 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~----~~~~~~~ 441 (491)
T 4gc0_A 370 IVALLS---MLFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW----LVAHFHN 441 (491)
T ss_dssp HHHHHH---HHHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH----HHHHHTT
T ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhh
Confidence 111111 1123333332222 23567889987 5789999999988888888887766533322110 0011233
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCcc
Q 014600 203 RWIAYSSIFIGCCFVGIFLSRTEEPR 228 (422)
Q Consensus 203 ~~~~~i~~~i~~i~~~i~~~~~~E~~ 228 (422)
.+.+++++.+++++.++.++++||.+
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hHHHHHHHHHHHHHHHHHHheecCCC
Confidence 44567778888888888889999975
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.58 E-value=4.2e-08 Score=98.70 Aligned_cols=169 Identities=8% Similarity=-0.147 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHH----HHHHHHHHHHHHhhcCccCcc
Q 014600 41 ACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG----AGSVLVAVSFSSVFGGCMPCR 115 (422)
Q Consensus 41 ~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll----~g~i~~~i~~~~lf~~~~p~~ 115 (422)
.....+++.|+.+. +.+....+.+..+..+...+..|+.|+++||+|||++... .+....++++.++.. .+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 377 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI--PGAL 377 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--HHHH
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--HHHh
Confidence 33445778888887 8777777888888888888899999999999999876431 455555555433221 0000
Q ss_pred c--cCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014600 116 I--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (422)
Q Consensus 116 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~~~~~~~ 193 (422)
. .+..+.++. .+..++.+++.+....+..++..|..+ +++|++..++.+....+|..+++.+.+.+.+
T Consensus 378 ~~~~~~~~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----- 447 (491)
T 4aps_A 378 YGTSGKVSPLWL----VGSWALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----- 447 (491)
T ss_dssp CCCCTTCCTHHH----HHHHHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----
T ss_pred cCCCCCccHHHH----HHHHHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 0 001122211 122235677777777778889999876 5789999999888888888887765432211
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 014600 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (422)
Q Consensus 194 g~~~~~~~~~~~~~i~~~i~~i~~~i~~~~~~E~ 227 (422)
.++.+.+.+.+.+.+++.++.++..|+.
T Consensus 448 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 448 ------KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344445555555555555554543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.76 E-value=2.3e-06 Score=82.70 Aligned_cols=141 Identities=13% Similarity=-0.007 Sum_probs=91.8
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHhhhhhhhhhhhhcccCCchhHHHHHHHH-HHHHHHH
Q 014600 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFSS 106 (422)
Q Consensus 29 y~~g~~~~~~~~~~~~~~l~~f~t~~-gls~~~~g~i~~i~~l~~ai~~p~~G~lsDr~Grrrp~ll~g~i~-~~i~~~~ 106 (422)
.....+...........+++.|+++. |.++.++|.+..+..+...+..++.|++.||+|| + +..+... ...+..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHH
Confidence 33444445555556667788888886 9999999999999999999999999999999887 2 2233322 1111110
Q ss_pred hhcCccCccccCCccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014600 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (422)
Q Consensus 107 lf~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~ 183 (422)
+.. + ..+..+ . ....+...+.+++++....+..++..|..+ ++|++..+..+....+|..+++.+.
T Consensus 281 ~~~---~--~~~~~~-~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 281 WIP---D--WFGVMN-V---WTLLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp SHH---H--HHHHHH-H---HHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred HHH---h--hhcccc-H---HHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000001 1 112222346778888888888899998874 6899999998888877776655433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.72 E-value=7.1e-05 Score=75.62 Aligned_cols=121 Identities=14% Similarity=0.061 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh----cccCCc---hhHHHHHHHHHHHHHHHhhcCccCcccc--CCccchhhhHHHH
Q 014600 60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYC 130 (422)
Q Consensus 60 ~~g~i~~i~~l~~ai~~p~~G~ls----Dr~Grr---rp~ll~g~i~~~i~~~~lf~~~~p~~~~--~~~~~~~~~~~~~ 130 (422)
..+.+..+..+...+..|+.|++. ||.||| +..+..+.++.++++.++.. .+.... ...+.++. .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~ 409 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQ----I 409 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHH----H
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHH----H
Confidence 355555555556666778888875 555543 22345566666666544321 110000 01122222 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014600 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (422)
Q Consensus 131 ~~~~l~~~~~~~~~~p~~al~~~~t~~~~eR~~l~~~~~~~~~ig~~l~~~~~~~l~ 187 (422)
+..++.+++......+..++..|..+ +++|++..++.+....+|+.+++.+.+.+.
T Consensus 410 ~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 410 LPYALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22246778888888888999999886 678999999999999999988877665443
Done!