Query 014601
Match_columns 422
No_of_seqs 258 out of 1438
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01001 putative inner membra 100.0 2.5E-55 5.3E-60 469.6 24.7 241 100-367 547-793 (795)
2 PRK02944 OxaA-like protein pre 100.0 7.4E-54 1.6E-58 417.0 25.4 208 98-345 31-242 (255)
3 PRK00145 putative inner membra 100.0 3.6E-53 7.8E-58 404.9 24.4 210 104-347 2-213 (223)
4 PRK01318 membrane protein inse 100.0 1.5E-52 3.3E-57 442.2 24.0 207 100-349 298-510 (521)
5 PRK01622 OxaA-like protein pre 100.0 1.1E-51 2.4E-56 402.0 25.5 211 98-348 32-252 (256)
6 PRK02463 OxaA-like protein pre 100.0 8.5E-52 1.8E-56 411.5 24.9 206 101-347 34-251 (307)
7 PRK01315 putative inner membra 100.0 5.6E-50 1.2E-54 401.1 28.0 241 101-347 5-258 (329)
8 TIGR03592 yidC_oxa1_cterm memb 100.0 2.8E-50 6.1E-55 373.3 20.8 181 130-345 1-181 (181)
9 PRK03449 putative inner membra 100.0 4.5E-49 9.8E-54 391.1 24.3 233 104-347 2-270 (304)
10 PRK02201 putative inner membra 100.0 5.9E-49 1.3E-53 397.0 23.7 222 100-346 100-341 (357)
11 COG0706 YidC Preprotein transl 100.0 9.2E-49 2E-53 391.5 23.4 213 100-348 84-298 (314)
12 PF02096 60KD_IMP: 60Kd inner 100.0 1.6E-48 3.5E-53 364.3 20.1 193 130-347 2-197 (198)
13 PRK00247 putative inner membra 100.0 1.1E-46 2.4E-51 387.3 25.1 252 104-356 2-282 (429)
14 PRK02654 putative inner membra 100.0 4.4E-40 9.6E-45 326.1 21.7 113 100-219 2-118 (375)
15 KOG1239 Inner membrane protein 99.9 1.4E-23 3E-28 214.4 17.3 205 99-345 77-290 (372)
16 KOG1239 Inner membrane protein 99.0 4.3E-10 9.3E-15 115.6 5.9 239 100-344 4-245 (372)
17 COG1422 Predicted membrane pro 96.3 0.021 4.6E-07 54.3 8.8 90 129-220 44-142 (201)
18 PRK00247 putative inner membra 80.1 40 0.00087 36.0 13.8 55 297-356 224-286 (429)
19 TIGR03593 yidC_nterm membrane 78.3 1.6 3.4E-05 44.7 2.7 23 100-122 343-365 (366)
20 PF01956 DUF106: Integral memb 74.6 8.2 0.00018 35.3 6.1 65 154-218 43-112 (168)
21 COG1422 Predicted membrane pro 62.7 1.4E+02 0.003 28.9 11.7 67 153-222 74-148 (201)
22 PF05280 FlhC: Flagellar trans 56.7 18 0.00038 34.0 4.6 37 183-219 38-85 (175)
23 PF09973 DUF2208: Predicted me 47.7 67 0.0014 31.7 7.1 80 127-220 21-111 (233)
24 COG1377 FlhB Flagellar biosynt 43.1 95 0.0021 32.6 7.8 42 133-179 195-239 (363)
25 PRK12772 bifunctional flagella 39.1 64 0.0014 36.0 6.2 31 144-179 462-495 (609)
26 PRK09108 type III secretion sy 38.9 76 0.0016 33.0 6.4 34 141-179 198-234 (353)
27 TIGR01404 FlhB_rel_III type II 38.2 77 0.0017 32.8 6.3 31 144-179 198-231 (342)
28 TIGR00328 flhB flagellar biosy 35.7 87 0.0019 32.5 6.2 34 141-179 196-232 (347)
29 KOG1532 GTPase XAB1, interacts 34.9 1.6E+02 0.0034 30.4 7.6 91 100-202 217-310 (366)
30 PRK12721 secretion system appa 34.5 1E+02 0.0022 32.1 6.4 31 144-179 199-232 (349)
31 PF09958 DUF2192: Uncharacteri 34.4 68 0.0015 31.6 4.8 44 160-203 10-53 (231)
32 PRK13109 flhB flagellar biosyn 33.8 1E+02 0.0023 32.1 6.4 32 143-179 207-241 (358)
33 PRK08156 type III secretion sy 33.8 98 0.0021 32.4 6.2 32 143-179 193-227 (361)
34 KOG3817 Uncharacterized conser 33.6 1.2E+02 0.0026 32.0 6.7 68 131-198 277-350 (452)
35 PRK05702 flhB flagellar biosyn 32.2 1.1E+02 0.0024 31.9 6.3 31 144-179 206-239 (359)
36 PF09803 DUF2346: Uncharacteri 31.7 74 0.0016 26.2 4.0 7 320-326 16-22 (80)
37 PRK06298 type III secretion sy 31.3 1.1E+02 0.0024 31.8 6.2 31 144-179 200-233 (356)
38 PRK12468 flhB flagellar biosyn 31.2 1.2E+02 0.0026 32.0 6.4 29 146-179 208-239 (386)
39 PF05190 MutS_IV: MutS family 31.2 68 0.0015 25.5 3.7 36 163-198 2-37 (92)
40 PF06936 Selenoprotein_S: Sele 29.7 93 0.002 29.7 4.8 13 130-142 35-47 (190)
41 TIGR02829 spore_III_AE stage I 27.0 7.8E+02 0.017 26.1 14.4 69 271-344 133-203 (381)
42 TIGR00828 EIID-AGA PTS system, 26.6 1.9E+02 0.0041 29.1 6.6 43 169-219 39-81 (271)
43 PF01277 Oleosin: Oleosin; In 25.0 4.3E+02 0.0094 23.4 7.8 47 307-353 34-89 (118)
44 PF00558 Vpu: Vpu protein; In 24.3 31 0.00067 28.7 0.5 56 139-197 15-78 (81)
45 cd02433 Nodulin-21_like_2 Nodu 23.6 1.1E+02 0.0023 30.0 4.2 24 173-196 91-114 (234)
46 PRK02201 putative inner membra 23.5 7.2E+02 0.016 26.0 10.4 116 100-221 96-225 (357)
47 PRK12722 transcriptional activ 22.8 4.2E+02 0.0092 25.3 7.8 37 183-219 38-85 (187)
48 PRK09855 PTS system N-acetylga 22.8 1.1E+02 0.0024 30.6 4.2 30 170-199 42-71 (263)
49 TIGR03142 cytochro_ccmI cytoch 22.3 3.1E+02 0.0068 23.6 6.5 45 132-176 3-54 (117)
50 cd02434 Nodulin-21_like_3 Nodu 22.1 95 0.0021 30.1 3.5 31 166-196 67-97 (225)
51 COG3105 Uncharacterized protei 21.6 6.1E+02 0.013 23.1 8.1 13 132-144 16-28 (138)
52 KOG4075 Cytochrome c oxidase, 21.5 1.9E+02 0.0042 27.1 5.2 61 158-218 49-123 (167)
No 1
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.5e-55 Score=469.57 Aligned_cols=241 Identities=30% Similarity=0.548 Sum_probs=200.9
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~e 179 (422)
.+||+++|+.|+.+++.++...+..+ ..|||+|||++||+||++++||++||+++++||+++||||++||+|||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 46999999999876665544443322 2379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcc--cccCCcCchhhhhhhcCCCccccc--
Q 014601 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLL-- 255 (422)
Q Consensus 180 k~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gfl--Wi~dLs~pD~i~~~~~g~~l~w~~-- 255 (422)
|+|+|||+|||||||||++||+|+|+|+||||++|++++++. +++..+|+ |++||+.+|++ ++|..
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLSapDpl--------f~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLTAPDVL--------FSWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhccCCCcc--------ccccccc
Confidence 999999999999999999999999999999999999999976 47888998 99999999964 23332
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh
Q 014601 256 PFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (422)
Q Consensus 256 p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~--~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Sn 333 (422)
++++ .++.+|||++++++|++++++.... ..++++++++.|+++||+|+++|++++|+||+|||++||
T Consensus 695 ~FiG----------d~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSN 764 (795)
T PRK01001 695 WFIG----------NEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSM 764 (795)
T ss_pred cccc----------cchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222 2578999999999999999864321 112334556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccccchhhHhhhhhc
Q 014601 334 VLSTAQQVWLRKLGGAKPVVTENASEIITAGRAK 367 (422)
Q Consensus 334 l~si~Q~~~lrk~~~~k~~~~e~~~~~~~~~~~k 367 (422)
+++++|++++++.+.. ++.+++++++++|
T Consensus 765 l~SI~QQ~iI~k~~~~-----kKi~a~ie~nkkk 793 (795)
T PRK01001 765 LLGVIQQWVTNKILDS-----KHLKNEVVPNKKK 793 (795)
T ss_pred HHHHHHHHHHHhhcch-----hHHHHHHHhhhhc
Confidence 9999999999985332 2237788877664
No 2
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=7.4e-54 Score=417.02 Aligned_cols=208 Identities=28% Similarity=0.644 Sum_probs=187.3
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC
Q 014601 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (422)
Q Consensus 98 ~~~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d 177 (422)
+.+|.|+++|..|++++++++|+.+ | .+||+|||++|+++|++++|++++|+|+++||+++|||+++||+||++|
T Consensus 31 ~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~ 105 (255)
T PRK02944 31 KSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSK 105 (255)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCC
Confidence 4567788999999999999999875 2 4799999999999999999999999999999999999999999999874
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCCccc
Q 014601 178 ----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (422)
Q Consensus 178 ----~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w 253 (422)
++|+|+|+++|||||||||++||+|+|+|+|||+|+|++++++.+ +.+++|+|+ ||+.+|
T Consensus 106 ~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D------------- 169 (255)
T PRK02944 106 DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD------------- 169 (255)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch-------------
Confidence 568899999999999999999999999999999999999998864 788999999 999877
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh
Q 014601 254 LLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (422)
Q Consensus 254 ~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Sn 333 (422)
||++||++++++++++.++..... ..++.+|+.|++++|+|+++|+.++|+|+++||++||
T Consensus 170 -----------------p~~iLPil~~~~~~~~~~~~~~~~--~~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~ 230 (255)
T PRK02944 170 -----------------PYYILPIVAGITTFIQQKLMMAGT--AGQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGN 230 (255)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988743211 1122356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014601 334 VLSTAQQVWLRK 345 (422)
Q Consensus 334 l~si~Q~~~lrk 345 (422)
+++++|++++++
T Consensus 231 ~~~i~Q~~~l~~ 242 (255)
T PRK02944 231 IFMIAQTYLIKG 242 (255)
T ss_pred HHHHHHHHHHcC
Confidence 999999999997
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.6e-53 Score=404.91 Aligned_cols=210 Identities=32% Similarity=0.623 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHH
Q 014601 104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI 181 (422)
Q Consensus 104 ~~~i~~p~~~vL~~l~~~l~~lg--lp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~ek~ 181 (422)
+++|.+++..+++++|+++..++ .+++||+|||++|+++|++++|++++|+++++||+++|||+++||+|||+|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 35566667777777776654321 2357999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCCccccccccCCC
Q 014601 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH 261 (422)
Q Consensus 182 q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w~~p~~~g~ 261 (422)
|+|+++||||||+||++||+|+++|+|||+++|+++|+++ ++.++||+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCcc---------------------
Confidence 9999999999999999999999999999999999999986 48899999999999887
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHH
Q 014601 262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341 (422)
Q Consensus 262 ~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Snl~si~Q~~ 341 (422)
||++||+++++++|++++++.+. +..+.++++.|+++||+++++++.++|+|+++||++||+|+++|++
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~ 207 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999886543 2233456788999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 014601 342 WLRKLG 347 (422)
Q Consensus 342 ~lrk~~ 347 (422)
++|+..
T Consensus 208 ~l~~~~ 213 (223)
T PRK00145 208 FIKKLE 213 (223)
T ss_pred HHHhhc
Confidence 999853
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=1.5e-52 Score=442.17 Aligned_cols=207 Identities=38% Similarity=0.754 Sum_probs=188.4
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~e 179 (422)
++||+.+++.|+.++|+++|.++ | +||+|||++||++|++++|++++|+++++||+++||||++||+|||+|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 68999999999999999999865 2 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcc-cccCCcCchhhhhhhcCCCcccccccc
Q 014601 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFV 258 (422)
Q Consensus 180 k~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gfl-Wi~dLs~pD~i~~~~~g~~l~w~~p~~ 258 (422)
|+|+|+|+|||||||||++||+|+|+|+||||++|++++++.+ +++++|+ |++||+.+|
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999999874 8889998 999999988
Q ss_pred CCCCCCCcchhhHHHHH-----HHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh
Q 014601 259 DGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (422)
Q Consensus 259 ~g~~~lg~~d~~py~IL-----PIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Sn 333 (422)
||++| |+++++++|++++++..+ .+++| +.+|.+||+|+++|+.++||||++||++||
T Consensus 432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn 494 (521)
T PRK01318 432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494 (521)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 999999999999986433 35543 335566999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 014601 334 VLSTAQQVWLRKLGGA 349 (422)
Q Consensus 334 l~si~Q~~~lrk~~~~ 349 (422)
+++++|++++++....
T Consensus 495 ~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 495 LLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999996443
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.1e-51 Score=401.99 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=187.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHH
Q 014601 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (422)
Q Consensus 98 ~~~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~s----s~kM~~lqPei~~IqeK 173 (422)
+.+|+|.+++++|+.++++++|+++ | .+||+||+++|+++|++++|++++|+|+ ++||+++|||+++||+|
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 4667788999999999999999876 3 4699999999999999999999999999 89999999999999999
Q ss_pred hhc--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhc
Q 014601 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (422)
Q Consensus 174 yk~--d~e---k~q~E~~kLYKk~gvnPl~-GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~ 247 (422)
||+ |++ ++|+|+++|||||||||++ ||+|+|+|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 987 543 5789999999999999999 99999999999999999999975 5889999999 898654
Q ss_pred CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 014601 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (422)
Q Consensus 248 g~~l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~L 327 (422)
++||++++++++++++++++...+..+++++|.|++++|+++++++.++|+|+++
T Consensus 177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL 231 (256)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998865433323344567889999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhcC
Q 014601 328 YWFTNNVLSTAQQVWLRKLGG 348 (422)
Q Consensus 328 YW~~Snl~si~Q~~~lrk~~~ 348 (422)
||++||+++++|++++|+.+.
T Consensus 232 YW~~snl~si~Q~~~l~~~~~ 252 (256)
T PRK01622 232 YWITGGLFLMGQTIVLRKVME 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999643
No 6
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=8.5e-52 Score=411.46 Aligned_cols=206 Identities=27% Similarity=0.486 Sum_probs=181.0
Q ss_pred CCch-HHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHHhh
Q 014601 101 GGWF-GFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRYA 175 (422)
Q Consensus 101 ~gw~-~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~s----s~kM~~lqPei~~IqeKyk 175 (422)
+||+ ++++.|+.++++++|+.+ | .+||+|||++||+||++++|++++|+++ ++||+++|||+++||+|||
T Consensus 34 ~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk 108 (307)
T PRK02463 34 TGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLK 108 (307)
T ss_pred CchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence 5665 799999999999999865 3 4699999999999999999999988865 6899999999999999998
Q ss_pred cC-----HHHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcC
Q 014601 176 GN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG 248 (422)
Q Consensus 176 ~d-----~ek~q~E~~kLYKk~gvnPl~--GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g 248 (422)
++ ++++|+|+++|||||||||++ ||+|+|+|+|||+|+|++++.. +++.+++|+|+ ||+.|
T Consensus 109 ~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p--------- 176 (307)
T PRK02463 109 NATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSP--------- 176 (307)
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCch---------
Confidence 63 345789999999999999998 8999999999999999999975 46889999999 88754
Q ss_pred CCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 014601 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY 328 (422)
Q Consensus 249 ~~l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LY 328 (422)
+++||++++++++++++++.... .+.+.++||.|+++||+|+++|++++|+||++|
T Consensus 177 -----------------------~~iLpii~~v~~~~q~~~~~~~~-~~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lY 232 (307)
T PRK02463 177 -----------------------SLVLTAIIGVLYFFQSWLSMMGV-PEEQREQMKAMMYMMPIMMVVFSFSSPAGVGLY 232 (307)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988754322 233446788999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhc
Q 014601 329 WFTNNVLSTAQQVWLRKLG 347 (422)
Q Consensus 329 W~~Snl~si~Q~~~lrk~~ 347 (422)
|++||+|+++|++++++++
T Consensus 233 W~~snlfsi~Q~~i~~~~~ 251 (307)
T PRK02463 233 WLVGGFFSIIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 7
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.6e-50 Score=401.15 Aligned_cols=241 Identities=26% Similarity=0.458 Sum_probs=180.5
Q ss_pred CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHH
Q 014601 101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (422)
Q Consensus 101 ~gw~~~i~~p~~~vL----~~l~~~l~~l-g--lp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeK 173 (422)
++||++|.+|++|++ .++|..++.+ | .+++||+|||++|++||++++|++++|+++++||+++|||+++||+|
T Consensus 5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k 84 (329)
T PRK01315 5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 579999999988776 5556554322 2 13479999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCCccc
Q 014601 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (422)
Q Consensus 174 yk~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w 253 (422)
||+|++++++|+++|||||||||++||+|+|+|+||||++|++||++++. . ..-.+|.+++... ...+...|..+.-
T Consensus 85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~-~~~~~~~~~~~~s-~~~~~~fg~~L~~ 161 (329)
T PRK01315 85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-G-DGIGPINPPLLES-FRHAHIFGAPLAA 161 (329)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccccchhhhHHHh-hhccccccccccc
Confidence 99999999999999999999999999999999999999999999987631 1 1112233332210 0000001111100
Q ss_pred cccccCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 014601 254 LLPFVDGHPPLGWH-DTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (422)
Q Consensus 254 ~~p~~~g~~~lg~~-d~~py~ILPIL~~~s~~ls~~l-~~----~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~L 327 (422)
++... ...++. ..+.+++||+++++++|++++. +. +....+++.+++|.|+|+||+|+++|+.++|+||+|
T Consensus 162 --~f~~~-~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~L 238 (329)
T PRK01315 162 --TFLQA-LNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLF 238 (329)
T ss_pred --ccccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01000 001111 2245789999999999988653 21 122235666778899999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhc
Q 014601 328 YWFTNNVLSTAQQVWLRKLG 347 (422)
Q Consensus 328 YW~~Snl~si~Q~~~lrk~~ 347 (422)
||++||+|+++|++++.+.+
T Consensus 239 YW~~snl~si~Qq~~v~r~~ 258 (329)
T PRK01315 239 YWLTSNVWTMGQQFYVIRNN 258 (329)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999877743
No 8
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=2.8e-50 Score=373.32 Aligned_cols=181 Identities=40% Similarity=0.772 Sum_probs=168.6
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 014601 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (422)
Q Consensus 130 ~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPI 209 (422)
|||+||+++|+++|++++|++++|+|+++||+++|||+++||+|||+|++++|+|+++||||||+||++||+|+|+|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHh
Q 014601 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 289 (422)
Q Consensus 210 fi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l 289 (422)
|+++|+++|++. ++.++||+|++||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999985 48899999999999887 6899999999999999998
Q ss_pred cCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 014601 290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345 (422)
Q Consensus 290 ~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Snl~si~Q~~~lrk 345 (422)
+....+ + .+++|.|++++|+|+++++.++|+|+++||++||+|+++|++++|+
T Consensus 129 ~~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 129 SPSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred cCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 654322 2 2457788899999999999999999999999999999999999875
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.5e-49 Score=391.13 Aligned_cols=233 Identities=23% Similarity=0.421 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHHhhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHH
Q 014601 104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180 (422)
Q Consensus 104 ~~~i~~p~~~vL~~l~~~l~~-lg--lp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~ek 180 (422)
+.++.+|+.+++.++|..+.. +| .+.+||+|||++|++||++++|++++|+++++||+++|||+++|||||++|+++
T Consensus 2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~ 81 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK 81 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence 466788888888888886532 12 134699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------cCcccccCCc
Q 014601 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS 237 (422)
Q Consensus 181 ~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~--~l~~---------------------~gflWi~dLs 237 (422)
+|+|+++|||||||||++||+|+|+|+|||+++|+++|++... ++.. ++|+|.+-.
T Consensus 82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~~~- 160 (304)
T PRK03449 82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDARLF- 160 (304)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhhhc-
Confidence 9999999999999999999999999999999999999998531 2111 133332211
Q ss_pred CchhhhhhhcCCCcc-ccc-cc--cCCCCCCCcch-hhHHHHHHHHHHHHHHHHhHhcCC----CCCCCHHhH-HHHHHH
Q 014601 238 GPTTIAARQSGSGIS-WLL-PF--VDGHPPLGWHD-TAAYLVLPVLLVVSQYASMELMKP----PQTDDPAQK-NTLLVF 307 (422)
Q Consensus 238 ~pD~i~~~~~g~~l~-w~~-p~--~~g~~~lg~~d-~~py~ILPIL~~~s~~ls~~l~~~----~~~~~p~qk-~mk~m~ 307 (422)
|..++ |.- +. .+....++-.| .+.++++||++++++|++++++.. .+..++++. ++|.|+
T Consensus 161 ----------g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~ 230 (304)
T PRK03449 161 ----------GAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLAL 230 (304)
T ss_pred ----------CCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHH
Confidence 11111 110 00 00000001011 124567899999999999887421 111233333 457889
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 014601 308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 347 (422)
Q Consensus 308 ~~mPlm~~~f~~~~PagL~LYW~~Snl~si~Q~~~lrk~~ 347 (422)
|+||+|+++|++++|+|+.|||++||+|+++||+++++..
T Consensus 231 ~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~ 270 (304)
T PRK03449 231 WVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKI 270 (304)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998743
No 10
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.9e-49 Score=396.99 Aligned_cols=222 Identities=19% Similarity=0.360 Sum_probs=183.7
Q ss_pred cCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc
Q 014601 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (422)
Q Consensus 100 ~~g-w~~~i~~p~~~vL~~l~--~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~ 176 (422)
++| |+++|++|+.+++.+++ ..+. .+.+++||+|||++|+++|++++|++++|+++++||+++|||+++||+|||+
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 456 66999999999999996 2221 1234679999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCC
Q 014601 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (422)
Q Consensus 177 d------~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~ 250 (422)
| ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+. ++...+|+|+ ||+.+|..
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi-dLs~~~~~-------- 247 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI-DLSATSWQ-------- 247 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc-ccCCCChh--------
Confidence 6 67899999999999999999999999999999999999999886 4788999999 99987621
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcC----C-------CCCCCHHhHHHHHHHHHHHHHHHHHhh
Q 014601 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P-------PQTDDPAQKNTLLVFKFLPLMIGYFSL 319 (422)
Q Consensus 251 l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~----~-------~~~~~p~qk~mk~m~~~mPlm~~~f~~ 319 (422)
..+ .+..+|+++++++++++++++.+++ . +..+.++++.++.|+++||+++++|+.
T Consensus 248 --~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~ 314 (357)
T PRK02201 248 --EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV 314 (357)
T ss_pred --hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 1112567777777777777765431 1 011123345677899999999999999
Q ss_pred hhhhHhHHHHHHhhHHHHHHHHHHHHh
Q 014601 320 SVPSGLSIYWFTNNVLSTAQQVWLRKL 346 (422)
Q Consensus 320 ~~PagL~LYW~~Snl~si~Q~~~lrk~ 346 (422)
++|+||.|||++||+|+++|+++++++
T Consensus 315 ~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 315 IFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984
No 11
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.2e-49 Score=391.53 Aligned_cols=213 Identities=35% Similarity=0.631 Sum_probs=188.7
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh-cCH
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ 178 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk-~d~ 178 (422)
+.||+.++..++..++.+++.+. |+ |||++||++|++||++++|++.++.++++||+++||++++|||||| +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 67999988888888888886543 22 7999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcc-cccCCcCchhhhhhhcCCCccccccc
Q 014601 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (422)
Q Consensus 179 ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gfl-Wi~dLs~pD~i~~~~~g~~l~w~~p~ 257 (422)
+++|+|+|+|||||||||++||+|+++|+|||+++|+++++..+ ++..+|+ |+.||+.+|+.
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp~--------------- 221 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDPD--------------- 221 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCCc---------------
Confidence 99999999999999999999999999999999999999999864 7788887 99999987721
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHH
Q 014601 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 337 (422)
Q Consensus 258 ~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Snl~si 337 (422)
..+++||++++++|++++++..... +++.++++.|+++||+++.++++++|+||.+||++||+|++
T Consensus 222 -------------~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi 287 (314)
T COG0706 222 -------------YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI 287 (314)
T ss_pred -------------hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 1236699999999999998765332 33344677899999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 014601 338 AQQVWLRKLGG 348 (422)
Q Consensus 338 ~Q~~~lrk~~~ 348 (422)
+|++++++...
T Consensus 288 ~Qq~ii~~~~~ 298 (314)
T COG0706 288 LQQYILNKPLE 298 (314)
T ss_pred HHHHHHhhhhh
Confidence 99999999543
No 12
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.6e-48 Score=364.26 Aligned_cols=193 Identities=39% Similarity=0.730 Sum_probs=177.0
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 014601 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (422)
Q Consensus 130 ~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPI 209 (422)
|||++|+++|+++|++++|++++|+|+++||+++|||+++||+||++|++++++|++++||||||||++||+|+|+|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-hcccccCcccccCCcCchhhhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhH
Q 014601 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME 288 (422)
Q Consensus 210 fi~ly~aLr~ma~-~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~ 288 (422)
|+++|+++|++++ +++.++||+|++||+.+|+. ...||++||++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 67889999999999999842 123799999999999999999
Q ss_pred hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 014601 289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 347 (422)
Q Consensus 289 l~~~--~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Snl~si~Q~~~lrk~~ 347 (422)
++.. ...++...+++|.|++++|+++++++.++|+|+++||++||+++++|++++|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8642 2233455677889999999999999999999999999999999999999999853
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=1.1e-46 Score=387.29 Aligned_cols=252 Identities=23% Similarity=0.351 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHHHHhhcc-ccCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC---
Q 014601 104 FGFISEAMEFVLKILKDGID-AVHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (422)
Q Consensus 104 ~~~i~~p~~~vL~~l~~~l~-~lglp--~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d--- 177 (422)
+.+|.+|+.++|.++|.++. .+|++ ++||++|+++||+||++++|++++|+++++||+.+||++++||+|||++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 56789999999999999876 35643 4599999999999999999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hcccccCcccccCCcCchhh---hhhhcCCC
Q 014601 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTI---AARQSGSG 250 (422)
Q Consensus 178 --~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~--~~l~~~gflWi~dLs~pD~i---~~~~~g~~ 250 (422)
++++|+|+++|||||||||++||+|+|+|+|||+|+|++|++|+. +|+.+..+-|+.-|+..|.- .++..|..
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 357889999999999999999999999999999999999999974 45554444556556655421 12222322
Q ss_pred ccccccccCC--CCCCCcc-hhhHHHHHHHHHHHH--HHHHhHhcCC----C-CCCCH----HhHHHHHHHHHHHHHHHH
Q 014601 251 ISWLLPFVDG--HPPLGWH-DTAAYLVLPVLLVVS--QYASMELMKP----P-QTDDP----AQKNTLLVFKFLPLMIGY 316 (422)
Q Consensus 251 l~w~~p~~~g--~~~lg~~-d~~py~ILPIL~~~s--~~ls~~l~~~----~-~~~~p----~qk~mk~m~~~mPlm~~~ 316 (422)
++-. +.... .-.+|.. ..+.+++||++++++ +++++.++.. . ..+++ +++.|+.|++++|+|+++
T Consensus 162 L~~~-~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPAY-VSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred cccc-cccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 2200 00000 0001110 112467888555544 4566654321 1 11223 455677788999999998
Q ss_pred Hhhh--hhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCccccc
Q 014601 317 FSLS--VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTEN 356 (422)
Q Consensus 317 f~~~--~PagL~LYW~~Snl~si~Q~~~lrk~~~~k~~~~e~ 356 (422)
++++ +|+||+|||++||+|+++||+++..+...+.+..++
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~ 282 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDE 282 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcc
Confidence 7776 799999999999999999999655444444444444
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.4e-40 Score=326.07 Aligned_cols=113 Identities=33% Similarity=0.604 Sum_probs=105.9
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHH----HHHHHhh
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~----~IqeKyk 175 (422)
|+||..+..+++.++++++|+++ + |||+|||++|++||++++||+++|+|+++||+.+||+|+ +||+|||
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 57887666788999999999764 2 799999999999999999999999999999999999985 7999999
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014601 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (422)
Q Consensus 176 ~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ 219 (422)
+|++++|+|+|+|||||| ||++||+|+|+|+|||+++|+++|.
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~ 118 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG 118 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999999999996
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=214.39 Aligned_cols=205 Identities=21% Similarity=0.365 Sum_probs=171.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc--
Q 014601 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-- 176 (422)
Q Consensus 99 ~~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~-- 176 (422)
...+|.. +..+.+.+..+|.+. |+| ||.+|+..|+.+|.+++|+.++++++.+|++.+.|+|+++.++.+.
T Consensus 77 ~~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~ 149 (372)
T KOG1239|consen 77 ALSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAA 149 (372)
T ss_pred HhcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhh
Confidence 3345543 345566777777654 555 8999999999999999999999999999999999999999998865
Q ss_pred ---C-HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hcccccCcccccCCcCchhhhhhhcCCC
Q 014601 177 ---N-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (422)
Q Consensus 177 ---d-~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~--~~l~~~gflWi~dLs~pD~i~~~~~g~~ 250 (422)
+ ....|+|+++++++||++| .....+++|.|+|+++|.+||.|+. +++.++|++|++||+.+|
T Consensus 150 ~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d---------- 218 (372)
T KOG1239|consen 150 QDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD---------- 218 (372)
T ss_pred ccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC----------
Confidence 1 2356778999999999999 9888888899999999999999985 477889999999999877
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 014601 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329 (422)
Q Consensus 251 l~w~~p~~~g~~~lg~~d~~py~ILPIL~~~s~~ls~~l~~~~~~-~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW 329 (422)
|++++|++..++++..++....... .+.....|+.+++++|+.++.++.++|+|+++||
T Consensus 219 --------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~yw 278 (372)
T KOG1239|consen 219 --------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYW 278 (372)
T ss_pred --------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhh
Confidence 6789999999998888887543221 1234456788999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHH
Q 014601 330 FTNNVLSTAQQVWLRK 345 (422)
Q Consensus 330 ~~Snl~si~Q~~~lrk 345 (422)
+ |+.+|..++|.
T Consensus 279 l----~s~~~~~vlr~ 290 (372)
T KOG1239|consen 279 L----FSLVQGLVLRS 290 (372)
T ss_pred h----hHHHHHHHhHH
Confidence 9 99999999765
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.3e-10 Score=115.65 Aligned_cols=239 Identities=23% Similarity=0.238 Sum_probs=204.2
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d~e 179 (422)
.+.|+..+....+..+..++......+.++.++.++...|+++.+...|+...+..+..-|+..+|-...+...+.....
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57899989999999999998888888888889999999999999999999999999999999999999999988888765
Q ss_pred --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhcccccCcccccCCcCchhhhhhhcCCCccccccc
Q 014601 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (422)
Q Consensus 180 --k~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~~~l~~~gflWi~dLs~pD~i~~~~~g~~l~w~~p~ 257 (422)
.+|.++.++|+-.|++++++|++..+-++..+..|.+.+. .++...+.++.|++.+...-..++.+++.++.|..++
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999997 5555667889999998887777777777888999888
Q ss_pred cCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHH
Q 014601 258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 336 (422)
Q Consensus 258 ~~g~~~lg~~-d~~py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~~~PagL~LYW~~Snl~s 336 (422)
.+.+.+.||. +...+.+++..+.++.|+.++.|..+..+.+.+ ...++|-+..+.-+..+.++..||+.+++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888888998 888888888889999999999887544333332 4456677777777788888889999888888
Q ss_pred HHHHHHHH
Q 014601 337 TAQQVWLR 344 (422)
Q Consensus 337 i~Q~~~lr 344 (422)
-.|+....
T Consensus 238 ~~~~~~~~ 245 (372)
T KOG1239|consen 238 GAETGLSS 245 (372)
T ss_pred HHHhhhhc
Confidence 88877554
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.29 E-value=0.021 Score=54.31 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHcCCCCC-CC
Q 014601 129 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPL-AG 199 (422)
Q Consensus 129 ~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~-----d~---ek~q~E~~kLYKk~gvnPl-~G 199 (422)
.+.-++|+++.+++=+.+ -+..+-.....||+++|-+++|.||++++ |. +|+|+++++...+.. ..+ -.
T Consensus 44 ~~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~-elmk~q 121 (201)
T COG1422 44 LPPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR-ELMKMQ 121 (201)
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 345567777777765433 33344456678999999999999998863 43 244544433332221 011 13
Q ss_pred chHHHHHHHHHHHHHHHHHhh
Q 014601 200 CLPTLATIPVWIGLYQALSNV 220 (422)
Q Consensus 200 clP~LiQiPIfi~ly~aLr~m 220 (422)
+-||+.+.++.|-+|.=++..
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~ 142 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWF 142 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 447776666666555555543
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=80.14 E-value=40 Score=36.04 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=29.8
Q ss_pred CHHhHHHHHHHHHHHHHHHH--------HhhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCccccc
Q 014601 297 DPAQKNTLLVFKFLPLMIGY--------FSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTEN 356 (422)
Q Consensus 297 ~p~qk~mk~m~~~mPlm~~~--------f~~~~PagL~LYW~~Snl~si~Q~~~lrk~~~~k~~~~e~ 356 (422)
...+..|.+++-+|++++.+ ..+.+.+++. +-+=+++...++++.+...+.+++-
T Consensus 224 ~k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlw-----tl~Qq~i~~~~l~~~~P~~~~~~~~ 286 (429)
T PRK00247 224 LKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLW-----TLIQNIIMYLILERKYPLTDEFKEH 286 (429)
T ss_pred HHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHhcCCCcchHHH
Confidence 45566665555555544322 2233444432 2234455567888888877776653
No 19
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=78.31 E-value=1.6 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.3
Q ss_pred cCCchHHHHHHHHHHHHHHHhhc
Q 014601 100 NGGWFGFISEAMEFVLKILKDGI 122 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l 122 (422)
|+|||.+|+.||.++|+++|.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999764
No 20
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=74.59 E-value=8.2 Score=35.29 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHHhccHHHHHHHHHhhc-CHHHHH---HHHHHHHHHcCCCCCCC-chHHHHHHHHHHHHHHHHH
Q 014601 154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQ---LETSRLYRQAGVNPLAG-CLPTLATIPVWIGLYQALS 218 (422)
Q Consensus 154 ~~ss~kM~~lqPei~~IqeKyk~-d~ek~q---~E~~kLYKk~gvnPl~G-clP~LiQiPIfi~ly~aLr 218 (422)
-+.+.++++++-+.++++++... ..++.+ +|+++..++.--+.+++ ..-+++|+|+|..++..+.
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~ 112 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFS 112 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 44455666666666666664332 233443 33444433332222322 2234445555555444444
No 21
>COG1422 Predicted membrane protein [Function unknown]
Probab=62.68 E-value=1.4e+02 Score=28.86 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccHHHHHHHH--------HhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 014601 153 QVESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (422)
Q Consensus 153 q~~ss~kM~~lqPei~~Iqe--------Kyk~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ma~ 222 (422)
-.+-+..|++.|-|.+|.+| |.++.++++.+.+.++.|.. ..||. .-.++.+|+|.=+++.++....
T Consensus 74 m~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM~--~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPML--YISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHccCcc
Confidence 34455678889999988877 23334555555555555542 33653 3456789999999999998653
No 22
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=56.73 E-value=18 Score=34.04 Aligned_cols=37 Identities=32% Similarity=0.608 Sum_probs=21.7
Q ss_pred HHHHHHHHH-cCCCCCCCchHHH----------HHHHHHHHHHHHHHh
Q 014601 183 LETSRLYRQ-AGVNPLAGCLPTL----------ATIPVWIGLYQALSN 219 (422)
Q Consensus 183 ~E~~kLYKk-~gvnPl~GclP~L----------iQiPIfi~ly~aLr~ 219 (422)
.++.+|||| +|++|=+|++|.- ++.=+|+.+|+.+.+
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 456799999 8999999998743 566677888877774
No 23
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=47.70 E-value=67 Score=31.66 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHH---Hhhc-C-------HHHHHHHHHHHHHHcCCC
Q 014601 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ---RYAG-N-------QERIQLETSRLYRQAGVN 195 (422)
Q Consensus 127 lp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~Iqe---Kyk~-d-------~ek~q~E~~kLYKk~gvn 195 (422)
+|..|+..+++-.++.=.+++=.+.++.+ .-.++.+|+.+ -|++ | .++.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD~el~~E~~~~~k~~--- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKDKELQKEYKKQMKAS--- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhCHHHHHHHHHHHHHH---
Confidence 46667788888777777777777777766 22334444411 1111 1 124566777777664
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhh
Q 014601 196 PLAGCLPTLATIPVWIGLYQALSNV 220 (422)
Q Consensus 196 Pl~GclP~LiQiPIfi~ly~aLr~m 220 (422)
+++ ++-+||++.++..+++.
T Consensus 92 ----~~~-ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 ----MMN-LLILPIYIILFFLLYPY 111 (233)
T ss_pred ----HHH-HHHHHHHHHHHHHHHHh
Confidence 333 34577777777776654
No 24
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.13 E-value=95 Score=32.57 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 133 laIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++++++.+++=++=++....+.....||.+ +|+++.||+ ||+
T Consensus 195 l~~~~~~liia~~D~~~qr~~~~k~lkMtK-----qEVKdE~K~sEGdPe 239 (363)
T COG1377 195 LAVLLLLLIVAAFDYFYQRFQYIKKLKMTK-----QEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHHHhhccCChh
Confidence 444555555555566667777777777763 667777775 776
No 25
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=39.13 E-value=64 Score=36.00 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=18.6
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 144 lll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=+++..++.....||. -+|+++.||+ ||+
T Consensus 462 ~~D~~~q~~~~~k~lkMs-----kqEvK~E~Ke~EGdP~ 495 (609)
T PRK12772 462 VADYVYQKYQYNKDLRMT-----KQEVKEEYKQDEGDPQ 495 (609)
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 333455555666666665 3677777775 776
No 26
>PRK09108 type III secretion system protein HrcU; Validated
Probab=38.94 E-value=76 Score=33.04 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=21.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 141 IVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 141 iVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=++=++...++.....||.+ +|+++.||+ ||+
T Consensus 198 via~~D~~~qr~~~~k~lkMSk-----qEvK~E~K~~EGdP~ 234 (353)
T PRK09108 198 LVGAADWKIQRWLFIRDNRMSK-----DEVKREHKESEGDPH 234 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 3334445666666666667663 667777774 776
No 27
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=38.23 E-value=77 Score=32.79 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=18.4
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 144 lll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=+++..++.....||.+ +|+++.||+ ||+
T Consensus 198 ~~D~~~qr~~~~k~lkMsk-----qEvKdE~Ke~EGdP~ 231 (342)
T TIGR01404 198 LADFAFQRYLFMKDLKMSK-----DEVKREYKEQEGDPE 231 (342)
T ss_pred HHHHHHHHHHHHHhCCCCH-----HHHHHHHHhccCCHH
Confidence 3344555566666666653 566667764 876
No 28
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=35.72 E-value=87 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=20.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 141 IVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 141 iVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=++=++...++.....||.+ +|+++.||+ ||+
T Consensus 196 via~~D~~~qr~~~~k~lrMsk-----qEVKdE~K~~EGdP~ 232 (347)
T TIGR00328 196 VIAVFDYFFQRWQYIKSLKMTK-----QEVKDELKQSEGDPE 232 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHhccCCHH
Confidence 3334445555566666666653 677777775 776
No 29
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=34.94 E-value=1.6e+02 Score=30.36 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=62.2
Q ss_pred cCCchHHHHHHHHHHHHHHHhhccccCCCc--chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-
Q 014601 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPY--SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~l~~lglp~--~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~- 176 (422)
..++++-+++.|.-.|+-+|..+..+|+.. ..|..=++..|- ..--..+...+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~------------~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD------------ESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 567888899999999999998888777541 255554444433 23346777888888876553332
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCchH
Q 014601 177 NQERIQLETSRLYRQAGVNPLAGCLP 202 (422)
Q Consensus 177 d~ek~q~E~~kLYKk~gvnPl~GclP 202 (422)
+.++.+.++.+|.|.-+++++.+-.+
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d~~ 310 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKNDVP 310 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCCCC
Confidence 33455566889999999999855433
No 30
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=34.51 E-value=1e+02 Score=32.10 Aligned_cols=31 Identities=16% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 144 lll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=+++..++.....||.+ +|+++.||+ ||+
T Consensus 199 ~~D~~~qr~~~~k~lkMsk-----qEvKdE~Ke~EGdP~ 232 (349)
T PRK12721 199 ILDYSFQRYKIMKQLKMSK-----DDVKQEYKDSEGDPE 232 (349)
T ss_pred HHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 4445555666666666653 667777774 776
No 31
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=34.41 E-value=68 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHH
Q 014601 160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPT 203 (422)
Q Consensus 160 M~~lqPei~~IqeKyk~d~ek~q~E~~kLYKk~gvnPl~GclP~ 203 (422)
++.+---+.++-++-.-|++++-..+++.|+++|+.|+.|.-|.
T Consensus 10 I~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 10 IEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 33333334444444223788888999999999999999997653
No 32
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=33.84 E-value=1e+02 Score=32.11 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 143 KVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 143 Rlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
=++=+++..++.....||.+ +|+++.||+ ||+
T Consensus 207 a~~D~~~q~~~~~k~lkMSk-----qEVKdE~Ke~EGdP~ 241 (358)
T PRK13109 207 VALDLVWARFHWRRSLRMTK-----QEIKDEHKQAEGDPS 241 (358)
T ss_pred HHHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 34445555666666666653 677777775 776
No 33
>PRK08156 type III secretion system protein SpaS; Validated
Probab=33.76 E-value=98 Score=32.40 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=19.2
Q ss_pred HHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 143 KVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 143 Rlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
=++=+++..++.....||.+ +|+++.||+ ||+
T Consensus 193 a~~D~~~Qr~~~~k~lkMSk-----qEvKdE~Ke~EGdP~ 227 (361)
T PRK08156 193 LILDFIAEYFLHMKDMKMDK-----QEVKREYKEQEGNPE 227 (361)
T ss_pred HHHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 34445555666666666653 667777774 776
No 34
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.63 E-value=1.2e+02 Score=31.95 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHH--HHHhhc--CHH--HHHHHHHHHHHHcCCCCCC
Q 014601 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQE--RIQLETSRLYRQAGVNPLA 198 (422)
Q Consensus 131 wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~I--qeKyk~--d~e--k~q~E~~kLYKk~gvnPl~ 198 (422)
...|+|++.++...+-+|+....+..-+--+..+|--.++ +|.|.. +.| +.-.|..+..++-++.+|+
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wk 350 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWK 350 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 4567788888888999999876654433223333332222 345543 332 3446788999999999886
No 35
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.17 E-value=1.1e+02 Score=31.91 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 144 lll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=++...++.....||. -+|+++.||+ ||+
T Consensus 206 ~~D~~~qr~~~~k~lkMs-----kqEVKdE~Ke~EGdP~ 239 (359)
T PRK05702 206 AIDVPFQRWQYLKKLKMT-----KQEVKDEHKQSEGDPE 239 (359)
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 333445555555555665 3667777775 776
No 36
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=31.69 E-value=74 Score=26.24 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.5
Q ss_pred hhhhHhH
Q 014601 320 SVPSGLS 326 (422)
Q Consensus 320 ~~PagL~ 326 (422)
+||.|+.
T Consensus 16 ~fPI~~~ 22 (80)
T PF09803_consen 16 FFPIGMF 22 (80)
T ss_pred HHHHHHH
Confidence 3566633
No 37
>PRK06298 type III secretion system protein; Validated
Probab=31.32 E-value=1.1e+02 Score=31.84 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 144 lll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
++=+++..++.....||. -+|+++.||+ ||+
T Consensus 200 ~~D~~~qr~~~~k~lkMS-----kqEvKdE~K~~EGdP~ 233 (356)
T PRK06298 200 VLDLVYQRHNFAKELKME-----KFEVKQEFKDTEGNPE 233 (356)
T ss_pred HHHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 334455555555555665 3667777775 776
No 38
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=31.23 E-value=1.2e+02 Score=32.03 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=16.6
Q ss_pred hhhccHHHHHHHHHHHhccHHHHHHHHHhhc---CHH
Q 014601 146 TFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (422)
Q Consensus 146 l~PL~ikq~~ss~kM~~lqPei~~IqeKyk~---d~e 179 (422)
=+++..++.....||. -+|+++.||+ ||+
T Consensus 208 D~~~qr~~~~k~lkMS-----kqEvKdE~K~~EGdP~ 239 (386)
T PRK12468 208 DVFYQITSHIKKLRMT-----KQDIRDEFKNQEGDPH 239 (386)
T ss_pred HHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 3444555555555554 3566677764 775
No 39
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=31.15 E-value=68 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCC
Q 014601 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (422)
Q Consensus 163 lqPei~~IqeKyk~d~ek~q~E~~kLYKk~gvnPl~ 198 (422)
+-|++++++++|.+-.+.++....++-+++|++.+.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999998888888889999999986553
No 40
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.67 E-value=93 Score=29.73 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH
Q 014601 130 SYGFAIILLTVIV 142 (422)
Q Consensus 130 ~wglaIIllTIiV 142 (422)
+|||-|++.+|++
T Consensus 35 ~yGWyil~~~I~l 47 (190)
T PF06936_consen 35 SYGWYILFGCILL 47 (190)
T ss_dssp -------------
T ss_pred HhCHHHHHHHHHH
Confidence 3566565554444
No 41
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=26.98 E-value=7.8e+02 Score=26.08 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhh--hhhhHhHHHHHHhhHHHHHHHHHHH
Q 014601 271 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL--SVPSGLSIYWFTNNVLSTAQQVWLR 344 (422)
Q Consensus 271 py~ILPIL~~~s~~ls~~l~~~~~~~~p~qk~mk~m~~~mPlm~~~f~~--~~PagL~LYW~~Snl~si~Q~~~lr 344 (422)
.|+++-.++.-+.+....... +.-+.+...|.-++|+.+..... ..-+|..+|=+.=-+..+.++++.+
T Consensus 133 ~Ylvli~i~l~sF~~~~~~a~-----~~I~~m~~FM~al~P~~~~lva~sGg~~SAa~f~p~il~~i~~~~~li~~ 203 (381)
T TIGR02829 133 CYMVLIIIALKSFHVAMSYAK-----EAIESMVDFMLALLPLLLALLASSGGVTSAAFFDPVILFSINTTGKVITN 203 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444443321 12223344566678887655433 4556666664544555555554433
No 42
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=26.56 E-value=1.9e+02 Score=29.11 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014601 169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (422)
Q Consensus 169 ~IqeKyk~d~ek~q~E~~kLYKk~gvnPl~GclP~LiQiPIfi~ly~aLr~ 219 (422)
.++|-|++|+|++++.+++=..=+|++|.. .|+..|+--++-+
T Consensus 39 ~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~--------~~~I~Gi~~amEE 81 (271)
T TIGR00828 39 AIKKLYPDDKAGRSAALKRHLEFFNTHPNL--------VGPIMGVTAAMEE 81 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHHH
Confidence 344558888877766666555557899863 3444565555543
No 43
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=25.02 E-value=4.3e+02 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHHhhHHHH---------HHHHHHHHhcCCCCcc
Q 014601 307 FKFLPLMIGYFSLSVPSGLSIYWFTNNVLST---------AQQVWLRKLGGAKPVV 353 (422)
Q Consensus 307 ~~~mPlm~~~f~~~~PagL~LYW~~Snl~si---------~Q~~~lrk~~~~k~~~ 353 (422)
....|++++|-=..+|+++.+.-.+..+.+- .-.+..|.+.+..|.-
T Consensus 34 ~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~~~ 89 (118)
T PF01277_consen 34 AVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHPPG 89 (118)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 3456776666556688888777655544433 2445566666655543
No 44
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.29 E-value=31 Score=28.65 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-------CHHHHHHHHHHHHHHcCC-CCC
Q 014601 139 TVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-------NQERIQLETSRLYRQAGV-NPL 197 (422)
Q Consensus 139 TIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~-------d~ek~q~E~~kLYKk~gv-nPl 197 (422)
.+++-++.+-+.+..++.-.|.+++.-.++.|+++-.+ |.| +|.++|-..+|. ||+
T Consensus 15 ~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIreraEDSGnES~Gd~E---eeL~~Lv~~~G~~~p~ 78 (81)
T PF00558_consen 15 ALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRERAEDSGNESDGDEE---EELSALVESMGFDNPM 78 (81)
T ss_dssp HHHHHHHHHHHH------------CHHHHHHHHCTTTCCHCTTTTCCH---H-CHCCHH-GCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccccCCCCCCCcHH---HHHHHHHHHcCCCCcc
Confidence 33345555666667777777777788888888887654 222 236666666663 554
No 45
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=23.63 E-value=1.1e+02 Score=30.01 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.7
Q ss_pred HhhcCHHHHHHHHHHHHHHcCCCC
Q 014601 173 RYAGNQERIQLETSRLYRQAGVNP 196 (422)
Q Consensus 173 Kyk~d~ek~q~E~~kLYKk~gvnP 196 (422)
...+++++.++|+.++|++.|+++
T Consensus 91 ~i~~~p~~e~~el~~iy~~~G~~~ 114 (234)
T cd02433 91 ELRKHPLEEAAELALIYRAKGLDE 114 (234)
T ss_pred HhhhCcHHHHHHHHHHHHHcCCCH
Confidence 334567777788888888888775
No 46
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=23.46 E-value=7.2e+02 Score=26.04 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=67.8
Q ss_pred cCCc-hHHHHHHHHHHHHHHHhhcc-ccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC
Q 014601 100 NGGW-FGFISEAMEFVLKILKDGID-AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (422)
Q Consensus 100 ~~gw-~~~i~~p~~~vL~~l~~~l~-~lglp~~wglaIIllTIiVRlll~PL~ikq~~ss~kM~~lqPei~~IqeKyk~d 177 (422)
++-| +|++...+.+-+.++..++. ..+++.++|++-++..+++=+++==+.+--. .|...-+-+|+++|.+.+.=
T Consensus 96 ~~~~~~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~---~k~~~s~~km~~lqPel~~I 172 (357)
T PRK02201 96 SWTWKYGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLIT---FKSTFNQEKQEELQGKKAKI 172 (357)
T ss_pred eeeeccchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHH
Confidence 3444 47676677777777766653 2245667888877766666554433333332 33333344666676666553
Q ss_pred HHHH----------HHHHHHHHHHcCCCCCCCchHHHHHHHHH--HHHHHHHHhhh
Q 014601 178 QERI----------QLETSRLYRQAGVNPLAGCLPTLATIPVW--IGLYQALSNVA 221 (422)
Q Consensus 178 ~ek~----------q~E~~kLYKk~gvnPl~GclP~LiQiPIf--i~ly~aLr~ma 221 (422)
++|. ++..++.++-|.=+ ||=|+---+|.+ +-+|.++.++.
T Consensus 173 q~Kyk~~~~d~~~~~k~q~e~~~Lykk~---ginP~~gclP~LiQ~Pif~aly~vl 225 (357)
T PRK02201 173 DAKYKDYKKDKQMKQRKQQEIQELYKKH---NISPFSPFVQMFVTLPIFIAVYRVV 225 (357)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 22234555555444 888877778877 57788888765
No 47
>PRK12722 transcriptional activator FlhC; Provisional
Probab=22.80 E-value=4.2e+02 Score=25.31 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=27.3
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 014601 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (422)
Q Consensus 183 ~E~~kLYKk~-gvnPl~GclP~----------LiQiPIfi~ly~aLr~ 219 (422)
.++.+||||- |++|=+|.+|. =++-=+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 3467899998 99999999882 2455677777777664
No 48
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=22.78 E-value=1.1e+02 Score=30.58 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=21.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHcCCCCCCC
Q 014601 170 IQQRYAGNQERIQLETSRLYRQAGVNPLAG 199 (422)
Q Consensus 170 IqeKyk~d~ek~q~E~~kLYKk~gvnPl~G 199 (422)
++|-|++|+|++++.+++=.+=+|++|..|
T Consensus 42 L~KlY~~~~e~~~~Al~rHl~ffNT~p~~~ 71 (263)
T PRK09855 42 LKKIYKDDKPGLSAAMKDNLEFINTHPNLV 71 (263)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchhh
Confidence 445588888887777776666689998643
No 49
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.31 E-value=3.1e+02 Score=23.60 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHHHHHHHHHH-HHHhhhccHHH------HHHHHHHHhccHHHHHHHHHhhc
Q 014601 132 GFAIILLTVIV-KVATFPLTKKQ------VESTLAMQNLQPKIKAIQQRYAG 176 (422)
Q Consensus 132 glaIIllTIiV-Rlll~PL~ikq------~~ss~kM~~lqPei~~IqeKyk~ 176 (422)
|+.+.++++++ =++++|+.... .+........+-++.|+.+...+
T Consensus 3 Wl~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~~ 54 (117)
T TIGR03142 3 WIVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLAE 54 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 33343444333 35666775421 12234556788888888776543
No 50
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.07 E-value=95 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHcCCCC
Q 014601 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNP 196 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q~E~~kLYKk~gvnP 196 (422)
|+++-+++..++++.-++|+.++|++.|.++
T Consensus 67 e~~re~~~i~~~pe~E~~el~~iy~~kG~~~ 97 (225)
T cd02434 67 EKKREEWEIENYPEGEKSEMVEIYSLKGLSE 97 (225)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCH
Confidence 3344444455677777788888888877664
No 51
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=6.1e+02 Score=23.09 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 014601 132 GFAIILLTVIVKV 144 (422)
Q Consensus 132 glaIIllTIiVRl 144 (422)
.+.|++-.+++|+
T Consensus 16 vvGi~IG~li~Rl 28 (138)
T COG3105 16 VVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666664
No 52
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=21.55 E-value=1.9e+02 Score=27.11 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=42.2
Q ss_pred HHHHhccHHHHHHHHHhhcCHHHHH-HHHHHHHHH----------cCCCCCC---CchHHHHHHHHHHHHHHHHH
Q 014601 158 LAMQNLQPKIKAIQQRYAGNQERIQ-LETSRLYRQ----------AGVNPLA---GCLPTLATIPVWIGLYQALS 218 (422)
Q Consensus 158 ~kM~~lqPei~~IqeKyk~d~ek~q-~E~~kLYKk----------~gvnPl~---GclP~LiQiPIfi~ly~aLr 218 (422)
.+-.+..+++++|++|-|+|=.++. +|..+||+= ++.|=++ ||...++=+-|++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 3556789999999999998754443 566677652 2223333 56677778888888888877
Done!