Query 014601
Match_columns 422
No_of_seqs 258 out of 1438
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blc_A Inner membrane protein 25.8 1.9 6.5E-05 42.3 -6.3 22 100-121 305-326 (330)
2 1e91_A Paired amphipathic heli 20.3 1.1E+02 0.0038 24.1 4.2 30 166-195 13-44 (85)
3 1v54_D Cytochrome C oxidase su 18.8 39 0.0013 29.7 1.3 31 161-191 31-62 (147)
4 1lbj_A Motilin; A-helix, B-tur 18.4 47 0.0016 20.7 1.2 17 379-395 9-25 (26)
5 1g1e_B SIN3A; four-helix bundl 16.1 1.3E+02 0.0045 23.9 3.8 28 166-193 16-45 (89)
6 2cr7_A Paired amphipathic heli 15.9 1.3E+02 0.0044 23.4 3.6 30 166-195 16-47 (80)
7 4fz4_A 0197-18KD, uncharacteri 14.9 2E+02 0.0067 25.4 4.8 33 155-192 77-109 (154)
8 2y69_D Cytochrome C oxidase su 14.8 56 0.0019 29.4 1.3 30 162-191 54-84 (169)
9 2czy_A Paired amphipathic heli 13.5 1.7E+02 0.006 22.4 3.7 30 166-195 10-41 (77)
10 2avu_E Flagellar transcription 12.4 2.2E+02 0.0076 25.9 4.6 37 183-219 38-85 (192)
No 1
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=25.84 E-value=1.9 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.9
Q ss_pred cCCchHHHHHHHHHHHHHHHhh
Q 014601 100 NGGWFGFISEAMEFVLKILKDG 121 (422)
Q Consensus 100 ~~gw~~~i~~p~~~vL~~l~~~ 121 (422)
++|||.||+.||.++|++||.+
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC----
T ss_pred cccCHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999864
No 2
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.31 E-value=1.1e+02 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~gvn 195 (422)
-++++++++.+++++.+ .++++-||+..++
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 46889999999999776 5889999998876
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=18.77 E-value=39 Score=29.74 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=23.1
Q ss_pred HhccHHHHHHHHHhhcCHHHHH-HHHHHHHHH
Q 014601 161 QNLQPKIKAIQQRYAGNQERIQ-LETSRLYRQ 191 (422)
Q Consensus 161 ~~lqPei~~IqeKyk~d~ek~q-~E~~kLYKk 191 (422)
+.|.|++.+|++|-|+|=.++. +|..+||+=
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 3468999999999999855443 566777764
No 4
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=18.43 E-value=47 Score=20.75 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=9.7
Q ss_pred HHHHHHHHHhccccccc
Q 014601 379 RFRQLKEEEKGKKLNKA 395 (422)
Q Consensus 379 ~~~~l~e~~k~~~~~k~ 395 (422)
..++++|.|+++..+|.
T Consensus 9 elqr~qEkErNkgqkKs 25 (26)
T 1lbj_A 9 ELQRMQEKERNKGQXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhccCCccC
Confidence 45677777777766654
No 5
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=16.13 E-value=1.3e+02 Score=23.86 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcC
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAG 193 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~g 193 (422)
-+++|+++|.+++++.+ .++++-|++..
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 46889999999998766 47788887653
No 6
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=15.89 E-value=1.3e+02 Score=23.38 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~gvn 195 (422)
-++++++++.+++++.. .++|+-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 46788899998888766 4788888887665
No 7
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=14.92 E-value=2e+02 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.410 Sum_probs=28.0
Q ss_pred HHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHc
Q 014601 155 ESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQA 192 (422)
Q Consensus 155 ~ss~kM~~lqPei~~IqeKyk~d~ek~q~E~~kLYKk~ 192 (422)
...++|..+--+....++||.+|. |+.+.|+.|
T Consensus 77 g~h~k~E~~tRqVa~YrkKYp~n~-----eIe~eyk~~ 109 (154)
T 4fz4_A 77 KYQIKVENYIRQVAELRKKYPGDN-----TIEEEYNAH 109 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHHH
Confidence 455788888889999999999985 788899977
No 8
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.80 E-value=56 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred hccHHHHHHHHHhhcCHHHHH-HHHHHHHHH
Q 014601 162 NLQPKIKAIQQRYAGNQERIQ-LETSRLYRQ 191 (422)
Q Consensus 162 ~lqPei~~IqeKyk~d~ek~q-~E~~kLYKk 191 (422)
.+.|++.+|++|-|+|=.++. +|..+||+=
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYri 84 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRL 84 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 458999999999999855443 566667653
No 9
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=13.51 E-value=1.7e+02 Score=22.40 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~gvn 195 (422)
-++++++++.+++++.. .++|+-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 46788899999888766 4788888887665
No 10
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=12.38 E-value=2.2e+02 Score=25.94 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=28.7
Q ss_pred HHHHHHHHHc-CCCCCCCchH----------HHHHHHHHHHHHHHHHh
Q 014601 183 LETSRLYRQA-GVNPLAGCLP----------TLATIPVWIGLYQALSN 219 (422)
Q Consensus 183 ~E~~kLYKk~-gvnPl~GclP----------~LiQiPIfi~ly~aLr~ 219 (422)
.++.+||||- |.+|=+|.+| .=|+.=+|+.+|+.+.+
T Consensus 38 ~rl~rLyke~~G~spPkG~lPfS~dWf~tw~~nIhsSlf~~iY~~l~~ 85 (192)
T 2avu_E 38 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 85 (192)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHhCccHhHHHHHHHHHHHHHHh
Confidence 3466799986 6999999988 23677788888988876
Done!