Query 014601
Match_columns 422
No_of_seqs 258 out of 1438
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 14:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014601.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014601hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 30.5 27 0.002 28.9 4.8 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 16.7 18 0.0013 29.7 0.8 31 161-191 28-59 (144)
3 d1lvaa3 a.4.5.35 (A:511-574) C 11.3 59 0.0043 22.3 2.2 22 176-197 3-24 (64)
4 d1ryka_ a.60.11.1 (A:) Hypothe 10.1 1.1E+02 0.0083 21.3 3.5 26 168-193 41-66 (69)
5 d1u5ta1 a.4.5.54 (A:20-164) Va 9.6 1.5E+02 0.011 23.8 4.5 41 157-198 14-58 (145)
6 d1s5qb_ a.59.1.1 (B:) Sin3A {M 9.1 1.4E+02 0.01 21.5 3.9 27 166-192 16-44 (89)
7 d2f05a1 a.59.1.1 (A:1-85) Sin3 9.0 1.2E+02 0.009 21.6 3.4 31 166-196 13-45 (85)
8 d2gf5a1 a.77.1.2 (A:89-191) FA 8.3 2E+02 0.014 20.6 4.5 34 163-196 34-68 (103)
9 d2hepa1 a.2.21.1 (A:1-42) Hypo 7.9 1.8E+02 0.013 18.6 3.4 11 182-192 27-37 (42)
10 d2cvba1 c.47.1.10 (A:2-188) Pr 7.0 1.1E+02 0.0081 24.7 2.6 35 162-196 49-97 (187)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=30.53 E-value=27 Score=28.88 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.4
Q ss_pred HHHHHHHHH-cCCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 014601 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (422)
Q Consensus 183 ~E~~kLYKk-~gvnPl~GclP~----------LiQiPIfi~ly~aLr~ 219 (422)
.++.+|||| +|.+|=+|.+|. -++-=+|+.+|+.+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 457899998 899999998863 3566688888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.74 E-value=18 Score=29.65 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.1
Q ss_pred HhccHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 014601 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 191 (422)
Q Consensus 161 ~~lqPei~~IqeKyk~d~ek~-q~E~~kLYKk 191 (422)
+++-|++.+|++|-|+|=.++ .+|..+||+-
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 567899999999999985544 3567778764
No 3
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=11.26 E-value=59 Score=22.31 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=18.2
Q ss_pred cCHHHHHHHHHHHHHHcCCCCC
Q 014601 176 GNQERIQLETSRLYRQAGVNPL 197 (422)
Q Consensus 176 ~d~ek~q~E~~kLYKk~gvnPl 197 (422)
+|++++.+.+..+|++.|..|-
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3567788889999999999984
No 4
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=10.05 E-value=1.1e+02 Score=21.32 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHcC
Q 014601 168 KAIQQRYAGNQERIQLETSRLYRQAG 193 (422)
Q Consensus 168 ~~IqeKyk~d~ek~q~E~~kLYKk~g 193 (422)
-++|++|..-++..+++..++.++|.
T Consensus 41 Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 41 GKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 46788998888899999999988875
No 5
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.58 E-value=1.5e+02 Score=23.79 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=31.9
Q ss_pred HHHHHhccHHHHHHHHHhhc----CHHHHHHHHHHHHHHcCCCCCC
Q 014601 157 TLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLA 198 (422)
Q Consensus 157 s~kM~~lqPei~~IqeKyk~----d~ek~q~E~~kLYKk~gvnPl~ 198 (422)
+..++..|-.++++..||++ || ..+.+-+++...-||+|++
T Consensus 14 ~~QL~vF~~~L~~FA~kH~~eI~~np-~FR~~F~~MC~~iGVDPLa 58 (145)
T d1u5ta1 14 RDQLMVFQERLVEFAKKHNSELQASP-EFRSKFMHMCSSIGIDPLS 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTTCH-HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCH-HHHHHHHHHHHHhCCChhh
Confidence 35677788889999999987 45 4456678888999999975
No 6
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.08 E-value=1.4e+02 Score=21.50 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~ 192 (422)
-++++++++.+++++.. .++|+-|++.
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f~~~ 44 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 46788999998888766 4677777764
No 7
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.97 E-value=1.2e+02 Score=21.63 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 014601 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (422)
Q Consensus 166 ei~~IqeKyk~d~ek~q--~E~~kLYKk~gvnP 196 (422)
-++++++++.+++++.+ .+++.-|++.-++.
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 46788999998888776 47788888876653
No 8
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.34 E-value=2e+02 Score=20.64 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHhhcC-HHHHHHHHHHHHHHcCCCC
Q 014601 163 LQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNP 196 (422)
Q Consensus 163 lqPei~~IqeKyk~d-~ek~q~E~~kLYKk~gvnP 196 (422)
=..+|+.|+.+|.+| +++..+-+..-++++|-+.
T Consensus 34 ~~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~a 68 (103)
T d2gf5a1 34 SDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENA 68 (103)
T ss_dssp CHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCc
Confidence 357899999999877 5555555666777777663
No 9
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=7.89 E-value=1.8e+02 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=6.7
Q ss_pred HHHHHHHHHHc
Q 014601 182 QLETSRLYRQA 192 (422)
Q Consensus 182 q~E~~kLYKk~ 192 (422)
.+|+++|.++|
T Consensus 27 ~~EQ~~LR~eY 37 (42)
T d2hepa1 27 KAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35666666665
No 10
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=7.01 E-value=1.1e+02 Score=24.66 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.1
Q ss_pred hccHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHcCCCC
Q 014601 162 NLQPKIKAIQQRYAGN--------------QERIQLETSRLYRQAGVNP 196 (422)
Q Consensus 162 ~lqPei~~IqeKyk~d--------------~ek~q~E~~kLYKk~gvnP 196 (422)
.-.|+|++++++|+++ .+.-.+++.+.-+++|++.
T Consensus 49 ~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~ 97 (187)
T d2cvba1 49 GSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFF 97 (187)
T ss_dssp TTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred hhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcc
Confidence 3478999999999852 2233456778888998873
Done!