Query 014605
Match_columns 421
No_of_seqs 232 out of 2401
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 5.7E-85 1.2E-89 641.8 33.7 375 21-420 193-574 (574)
2 cd06204 CYPOR NADPH cytochrome 100.0 7.1E-82 1.5E-86 643.7 45.7 383 23-420 5-416 (416)
3 cd06203 methionine_synthase_re 100.0 6.4E-82 1.4E-86 641.0 44.0 376 26-420 1-398 (398)
4 cd06207 CyPoR_like NADPH cytoc 100.0 2.9E-81 6.4E-86 633.7 44.1 378 26-420 1-382 (382)
5 cd06202 Nitric_oxide_synthase 100.0 5.1E-81 1.1E-85 635.5 45.8 384 26-421 1-403 (406)
6 KOG1158 NADP/FAD dependent oxi 100.0 9.6E-82 2.1E-86 654.6 36.9 385 26-420 249-645 (645)
7 COG0369 CysJ Sulfite reductase 100.0 4.9E-80 1.1E-84 643.1 40.1 365 21-420 219-587 (587)
8 cd06206 bifunctional_CYPOR The 100.0 6.2E-79 1.3E-83 617.1 44.3 373 26-420 1-384 (384)
9 PRK10953 cysJ sulfite reductas 100.0 5.4E-76 1.2E-80 620.9 44.5 360 22-420 236-600 (600)
10 cd06199 SiR Cytochrome p450- l 100.0 2.3E-75 4.9E-80 585.9 41.1 354 26-420 1-360 (360)
11 TIGR01931 cysJ sulfite reducta 100.0 2.2E-74 4.9E-79 611.1 44.4 360 22-420 233-597 (597)
12 PRK06214 sulfite reductase; Pr 100.0 5.1E-74 1.1E-78 594.8 41.5 360 21-420 166-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 4.4E-49 9.5E-54 369.7 19.7 211 23-238 8-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 4.3E-42 9.2E-47 342.9 28.3 265 22-420 89-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3.5E-39 7.5E-44 311.4 24.7 229 183-420 32-267 (267)
16 cd06208 CYPOR_like_FNR These f 100.0 1E-36 2.2E-41 297.2 22.8 223 184-420 42-286 (286)
17 TIGR03224 benzo_boxA benzoyl-C 100.0 1.5E-35 3.3E-40 301.8 32.3 208 197-420 197-411 (411)
18 PLN03116 ferredoxin--NADP+ red 100.0 1E-36 2.2E-41 300.0 22.0 224 184-420 58-307 (307)
19 cd06200 SiR_like1 Cytochrome p 100.0 1.5E-36 3.2E-41 289.7 20.7 209 184-420 33-245 (245)
20 cd06201 SiR_like2 Cytochrome p 100.0 2.4E-34 5.3E-39 280.8 27.3 188 198-420 100-289 (289)
21 cd00322 FNR_like Ferredoxin re 99.9 1.2E-27 2.6E-32 223.8 13.7 184 184-390 24-213 (223)
22 cd06189 flavin_oxioreductase N 99.9 1.7E-27 3.7E-32 224.0 13.1 181 183-390 26-212 (224)
23 PRK10926 ferredoxin-NADP reduc 99.9 1.2E-27 2.5E-32 228.8 11.6 184 184-390 32-228 (248)
24 cd06188 NADH_quinone_reductase 99.9 4.1E-27 8.8E-32 229.3 14.8 179 198-390 86-271 (283)
25 cd06211 phenol_2-monooxygenase 99.9 4E-27 8.6E-32 223.6 13.9 182 183-390 36-226 (238)
26 cd06209 BenDO_FAD_NAD Benzoate 99.9 4.6E-27 9.9E-32 221.6 13.6 177 184-389 32-214 (228)
27 cd06190 T4MO_e_transfer_like T 99.9 4E-27 8.6E-32 222.5 12.6 184 183-390 24-218 (232)
28 PRK08051 fre FMN reductase; Va 99.9 4.5E-27 9.7E-32 222.5 12.7 181 183-390 30-217 (232)
29 cd06195 FNR1 Ferredoxin-NADP+ 99.9 5E-27 1.1E-31 223.2 12.7 203 183-420 25-241 (241)
30 PRK07609 CDP-6-deoxy-delta-3,4 99.9 6.4E-27 1.4E-31 233.6 13.0 180 183-389 132-319 (339)
31 PRK13289 bifunctional nitric o 99.9 1.1E-26 2.4E-31 236.7 14.1 183 183-390 185-380 (399)
32 PRK11872 antC anthranilate dio 99.9 1.1E-26 2.3E-31 232.0 13.6 179 184-390 138-323 (340)
33 cd06187 O2ase_reductase_like T 99.9 1.6E-26 3.5E-31 216.9 13.9 180 184-390 25-212 (224)
34 PRK05464 Na(+)-translocating N 99.9 1.4E-26 3.1E-31 236.6 14.6 181 196-390 208-395 (409)
35 TIGR01941 nqrF NADH:ubiquinone 99.9 2.3E-26 4.9E-31 234.8 15.1 180 197-390 205-391 (405)
36 cd06212 monooxygenase_like The 99.9 1.9E-26 4.1E-31 217.9 13.2 180 184-390 31-219 (232)
37 PRK10684 HCP oxidoreductase, N 99.9 1.9E-26 4.1E-31 229.6 13.6 183 183-390 37-225 (332)
38 cd06210 MMO_FAD_NAD_binding Me 99.9 2.1E-26 4.6E-31 218.0 13.3 182 183-390 35-223 (236)
39 cd06191 FNR_iron_sulfur_bindin 99.9 1.9E-26 4.2E-31 217.7 12.6 177 184-389 29-218 (231)
40 PRK08345 cytochrome-c3 hydroge 99.9 4.2E-26 9.1E-31 222.8 13.7 178 184-390 39-234 (289)
41 cd06213 oxygenase_e_transfer_s 99.9 5.1E-26 1.1E-30 214.4 13.5 178 184-390 29-215 (227)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 1.2E-25 2.6E-30 210.9 15.0 180 184-390 25-209 (222)
43 cd06184 flavohem_like_fad_nad_ 99.9 1.8E-25 4E-30 213.1 13.3 177 184-389 38-230 (247)
44 PRK05713 hypothetical protein; 99.9 1.2E-25 2.7E-30 221.8 12.1 175 183-390 119-296 (312)
45 cd06215 FNR_iron_sulfur_bindin 99.9 3.2E-25 6.9E-30 209.1 13.2 178 184-389 29-218 (231)
46 cd06196 FNR_like_1 Ferredoxin 99.9 3.2E-25 7E-30 207.5 12.2 176 183-390 28-208 (218)
47 cd06216 FNR_iron_sulfur_bindin 99.9 3.7E-25 8E-30 210.6 12.6 179 184-390 47-232 (243)
48 cd06221 sulfite_reductase_like 99.9 5.7E-25 1.2E-29 210.8 13.3 179 183-390 28-212 (253)
49 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 8.5E-25 1.9E-29 219.4 12.1 184 184-390 34-229 (352)
50 cd06217 FNR_iron_sulfur_bindin 99.9 8.7E-25 1.9E-29 206.6 11.4 179 184-390 32-223 (235)
51 cd06198 FNR_like_3 NAD(P) bind 99.9 1.9E-24 4E-29 202.1 13.0 174 184-390 24-203 (216)
52 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.8E-24 3.9E-29 206.6 13.1 172 183-391 25-203 (246)
53 PRK08221 anaerobic sulfite red 99.9 2.5E-24 5.4E-29 207.6 13.2 174 183-390 33-214 (263)
54 cd06214 PA_degradation_oxidore 99.9 3.6E-24 7.8E-29 203.3 13.7 181 184-390 34-228 (241)
55 cd06183 cyt_b5_reduct_like Cyt 99.9 3.5E-24 7.6E-29 202.1 12.6 179 184-389 30-223 (234)
56 cd06185 PDR_like Phthalate dio 99.9 1.1E-23 2.4E-28 196.0 13.4 171 183-390 26-198 (211)
57 TIGR02911 sulfite_red_B sulfit 99.9 9.4E-24 2E-28 203.3 12.9 176 183-390 31-212 (261)
58 PTZ00319 NADH-cytochrome B5 re 99.9 1.1E-23 2.4E-28 206.6 13.0 194 184-390 65-290 (300)
59 COG1018 Hmp Flavodoxin reducta 99.9 1.7E-23 3.8E-28 201.0 13.6 180 183-392 35-220 (266)
60 PTZ00274 cytochrome b5 reducta 99.9 1.9E-23 4.1E-28 206.5 13.9 180 184-386 83-281 (325)
61 PRK00054 dihydroorotate dehydr 99.9 5.7E-23 1.2E-27 196.6 12.0 165 184-390 33-203 (250)
62 COG2871 NqrF Na+-transporting 99.9 8.1E-23 1.7E-27 190.6 12.0 185 197-395 210-401 (410)
63 PRK06222 ferredoxin-NADP(+) re 99.9 9.3E-23 2E-27 198.4 12.1 171 184-390 29-203 (281)
64 cd06220 DHOD_e_trans_like2 FAD 99.9 1.2E-22 2.7E-27 192.3 12.2 164 183-390 24-189 (233)
65 cd06219 DHOD_e_trans_like1 FAD 99.9 1.5E-22 3.3E-27 193.5 12.2 170 184-389 28-201 (248)
66 COG0543 UbiB 2-polyprenylpheno 99.9 2.9E-22 6.4E-27 191.8 13.2 177 183-391 36-215 (252)
67 cd06192 DHOD_e_trans_like FAD/ 99.9 4E-22 8.7E-27 189.9 11.8 170 184-391 26-201 (243)
68 cd06197 FNR_like_2 FAD/NAD(P) 99.9 8.6E-22 1.9E-26 185.0 11.8 143 198-389 60-211 (220)
69 PLN02252 nitrate reductase [NA 99.9 1.7E-21 3.7E-26 213.8 13.3 190 184-389 666-877 (888)
70 KOG0534 NADH-cytochrome b-5 re 99.9 5.9E-21 1.3E-25 182.9 14.5 169 187-382 86-267 (286)
71 PRK05802 hypothetical protein; 99.8 2.8E-21 6.1E-26 191.0 11.2 168 184-390 96-276 (320)
72 PTZ00306 NADH-dependent fumara 99.8 1.6E-20 3.4E-25 213.5 11.4 182 183-390 948-1151(1167)
73 COG4097 Predicted ferric reduc 99.8 3.4E-20 7.4E-25 179.2 11.4 175 184-391 244-424 (438)
74 PRK12778 putative bifunctional 99.8 6.6E-20 1.4E-24 200.9 12.6 170 184-389 29-202 (752)
75 cd06193 siderophore_interactin 99.8 3.1E-19 6.7E-24 169.3 9.6 156 197-389 63-219 (235)
76 cd06186 NOX_Duox_like_FAD_NADP 99.8 5.8E-19 1.3E-23 164.1 10.1 160 183-389 25-197 (210)
77 PF00175 NAD_binding_1: Oxidor 99.8 1.3E-18 2.8E-23 144.6 7.9 104 270-385 1-109 (109)
78 PRK12779 putative bifunctional 99.8 3.9E-18 8.5E-23 189.5 13.5 181 184-390 678-869 (944)
79 PRK12775 putative trifunctiona 99.7 1.4E-17 2.9E-22 186.6 12.1 169 184-389 29-202 (1006)
80 PLN02292 ferric-chelate reduct 99.5 3.7E-14 8.1E-19 151.9 12.9 173 184-380 353-550 (702)
81 PLN02844 oxidoreductase/ferric 99.5 2.9E-14 6.2E-19 153.2 11.7 176 184-380 340-539 (722)
82 PLN02631 ferric-chelate reduct 99.5 1.9E-14 4.2E-19 153.8 10.2 142 184-344 336-492 (699)
83 KOG3378 Globins and related he 99.3 1.4E-12 3E-17 121.7 1.9 175 184-393 182-371 (385)
84 PF08030 NAD_binding_6: Ferric 98.7 4.9E-08 1.1E-12 86.2 7.5 72 267-344 3-79 (156)
85 PF00970 FAD_binding_6: Oxidor 98.4 5.5E-08 1.2E-12 79.3 -0.1 65 184-260 31-98 (99)
86 PRK06567 putative bifunctional 98.4 7.1E-07 1.5E-11 98.6 7.7 98 184-304 820-924 (1028)
87 KOG0039 Ferric reductase, NADH 98.2 5.2E-06 1.1E-10 89.7 9.4 124 185-321 384-536 (646)
88 COG2375 ViuB Siderophore-inter 97.6 0.0016 3.4E-08 62.4 13.4 166 195-401 84-250 (265)
89 cd06182 CYPOR_like NADPH cytoc 94.0 0.067 1.4E-06 51.7 4.5 42 27-68 2-44 (267)
90 PF08021 FAD_binding_9: Sidero 92.5 0.085 1.8E-06 44.5 2.3 53 196-259 65-117 (117)
91 PF08022 FAD_binding_8: FAD-bi 88.7 0.069 1.5E-06 44.0 -1.6 45 184-241 31-80 (105)
92 PLN03116 ferredoxin--NADP+ red 77.2 4.7 0.0001 39.7 5.6 45 23-68 24-69 (307)
93 cd06208 CYPOR_like_FNR These f 69.9 10 0.00022 36.8 6.0 41 26-67 12-52 (286)
94 cd06200 SiR_like1 Cytochrome p 66.4 13 0.00028 35.2 5.7 42 27-68 3-44 (245)
95 PF00970 FAD_binding_6: Oxidor 64.7 19 0.00041 28.5 5.6 37 26-67 3-41 (99)
96 KOG4723 Uncharacterized conser 54.5 19 0.00042 33.3 4.2 116 296-421 18-140 (248)
97 PF04703 FaeA: FaeA-like prote 48.1 50 0.0011 24.5 4.9 26 392-417 22-47 (62)
98 COG5017 Uncharacterized conser 46.2 98 0.0021 27.0 7.0 105 268-376 1-124 (161)
99 cd06196 FNR_like_1 Ferredoxin 46.0 36 0.00077 31.2 4.9 38 26-69 4-41 (218)
100 cd06217 FNR_iron_sulfur_bindin 42.0 44 0.00095 30.9 4.9 38 26-68 5-43 (235)
101 cd06212 monooxygenase_like The 40.9 57 0.0012 30.2 5.4 38 26-68 4-42 (232)
102 cd06184 flavohem_like_fad_nad_ 40.2 62 0.0013 30.2 5.6 39 26-69 10-50 (247)
103 COG3937 Uncharacterized conser 39.1 34 0.00073 28.2 3.0 40 374-414 17-56 (108)
104 PF11132 SplA: Transcriptional 38.0 22 0.00049 27.1 1.7 17 54-70 4-20 (75)
105 PF04954 SIP: Siderophore-inte 37.3 55 0.0012 27.3 4.2 99 267-390 3-102 (119)
106 KOG0025 Zn2+-binding dehydroge 36.6 19 0.00041 35.3 1.4 59 56-125 99-160 (354)
107 cd06209 BenDO_FAD_NAD Benzoate 34.6 89 0.0019 28.7 5.7 38 26-68 5-43 (228)
108 cd06215 FNR_iron_sulfur_bindin 34.4 72 0.0016 29.3 5.0 37 26-67 2-39 (231)
109 cd06213 oxygenase_e_transfer_s 33.5 81 0.0018 29.0 5.2 37 26-68 4-40 (227)
110 cd06218 DHOD_e_trans FAD/NAD b 33.3 53 0.0012 31.0 4.0 37 27-68 1-37 (246)
111 cd06211 phenol_2-monooxygenase 31.9 1.1E+02 0.0024 28.4 5.9 40 24-68 7-48 (238)
112 cd06214 PA_degradation_oxidore 31.7 90 0.002 28.9 5.2 37 26-67 5-44 (241)
113 PF03275 GLF: UDP-galactopyran 31.4 95 0.0021 28.8 5.1 61 15-81 125-185 (204)
114 cd06187 O2ase_reductase_like T 31.3 79 0.0017 28.9 4.7 36 27-68 1-36 (224)
115 cd06190 T4MO_e_transfer_like T 31.3 64 0.0014 29.8 4.1 29 40-69 9-37 (232)
116 PF11272 DUF3072: Protein of u 30.8 1.3E+02 0.0028 21.9 4.6 41 371-412 9-54 (57)
117 cd06189 flavin_oxioreductase N 30.6 95 0.0021 28.5 5.1 37 26-68 2-38 (224)
118 PRK14841 undecaprenyl pyrophos 30.4 1.5E+02 0.0033 28.0 6.5 60 335-394 52-117 (233)
119 PRK07609 CDP-6-deoxy-delta-3,4 29.8 1E+02 0.0023 30.4 5.6 38 26-68 106-144 (339)
120 PRK00054 dihydroorotate dehydr 29.1 1.1E+02 0.0023 28.9 5.2 38 26-69 8-45 (250)
121 cd06191 FNR_iron_sulfur_bindin 28.9 97 0.0021 28.5 4.9 38 26-68 2-40 (231)
122 PF13580 SIS_2: SIS domain; PD 28.1 1E+02 0.0022 26.3 4.5 39 351-390 19-57 (138)
123 PF07583 PSCyt2: Protein of un 27.2 2.3E+02 0.0049 26.4 6.9 30 109-138 20-50 (208)
124 cd06183 cyt_b5_reduct_like Cyt 26.2 1.3E+02 0.0028 27.5 5.3 39 26-69 2-42 (234)
125 PTZ00319 NADH-cytochrome B5 re 25.9 1.2E+02 0.0027 29.6 5.2 45 19-68 28-76 (300)
126 cd06219 DHOD_e_trans_like1 FAD 25.7 1.2E+02 0.0026 28.6 4.9 38 26-68 2-39 (248)
127 KOG4576 Sulfite oxidase, heme- 25.7 1E+02 0.0022 26.5 3.9 41 247-287 94-139 (167)
128 PF02080 TrkA_C: TrkA-C domain 25.5 45 0.00098 24.4 1.6 30 50-81 42-71 (71)
129 PRK08051 fre FMN reductase; Va 24.8 1.3E+02 0.0028 27.9 5.0 35 26-66 6-40 (232)
130 cd06216 FNR_iron_sulfur_bindin 24.5 1.2E+02 0.0026 28.2 4.7 37 26-67 21-57 (243)
131 PF11074 DUF2779: Domain of un 23.8 85 0.0018 26.9 3.1 60 119-180 47-116 (130)
132 KOG2536 MAM33, mitochondrial m 23.2 86 0.0019 30.1 3.3 42 111-154 215-256 (263)
133 KOG0098 GTPase Rab2, small G p 22.7 1.8E+02 0.0038 26.9 5.0 14 363-376 107-120 (216)
134 PRK14830 undecaprenyl pyrophos 22.5 3.9E+02 0.0085 25.6 7.7 27 366-392 108-134 (251)
135 cd06195 FNR1 Ferredoxin-NADP+ 22.1 1.5E+02 0.0032 27.6 4.8 37 26-68 1-37 (241)
136 COG4071 Uncharacterized protei 22.0 6.4E+02 0.014 23.6 8.5 114 53-180 126-252 (278)
137 PRK12446 undecaprenyldiphospho 21.9 1.2E+02 0.0025 30.4 4.2 24 267-290 3-28 (352)
138 cd06194 FNR_N-term_Iron_sulfur 21.9 1.3E+02 0.0028 27.5 4.3 28 40-68 9-36 (222)
139 PRK14842 undecaprenyl pyrophos 21.7 2.8E+02 0.0061 26.4 6.5 59 335-393 57-121 (241)
140 cd06210 MMO_FAD_NAD_binding Me 21.6 2E+02 0.0043 26.5 5.5 38 26-68 5-47 (236)
141 PRK10310 PTS system galactitol 21.5 50 0.0011 26.4 1.2 11 269-279 5-15 (94)
142 PRK05713 hypothetical protein; 21.5 1.5E+02 0.0033 29.0 4.9 36 26-67 95-130 (312)
143 cd06185 PDR_like Phthalate dio 21.2 1.4E+02 0.003 27.0 4.3 29 40-68 8-38 (211)
144 PF06753 Bradykinin: Bradykini 21.1 28 0.0006 19.0 -0.2 9 275-283 6-14 (19)
145 PRK14840 undecaprenyl pyrophos 20.6 2.9E+02 0.0063 26.5 6.4 60 335-394 71-136 (250)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=5.7e-85 Score=641.78 Aligned_cols=375 Identities=46% Similarity=0.787 Sum_probs=347.5
Q ss_pred Cccee--eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceE--EEeeCCcc
Q 014605 21 AVCFL--KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALI--TVQHKEMK 96 (421)
Q Consensus 21 ~~~~~--~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v--~~~~~~~~ 96 (421)
|..+. +|++|++||+.+|+++|||++|+++++.+.|+|||++.|+|.|+++.|++|++.+||++++.. .+..+...
T Consensus 193 ~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~ 272 (574)
T KOG1159|consen 193 PQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS 272 (574)
T ss_pred cccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc
Confidence 44444 899999999999999999999999988999999999999999999999999999999998554 44433322
Q ss_pred CCCCCccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHh
Q 014605 97 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 176 (421)
Q Consensus 97 ~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l 176 (421)
...| .++.|+|++.++++|+||++ +|+++||..|++|++|+.||++|+++++.+|.++|++|+.+++||++|+|
T Consensus 273 ~~~~-----~~~~p~sl~~~lk~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvL 346 (574)
T KOG1159|consen 273 SPLP-----LLPNPLSLLNLLKYVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVL 346 (574)
T ss_pred cccc-----ccCCchhHHHHHHHhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHH
Confidence 2222 46899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeec
Q 014605 177 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 256 (421)
Q Consensus 177 ~~f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 256 (421)
++|+|+++|+++|++.+|.++||+|||||+|..++ ++|+|++|+|+|..++.|.|+||+||++|++ |+.|.+.+..
T Consensus 347 eDF~sv~lp~~yl~d~~P~IrPR~fSIas~~~~~~--leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~ 422 (574)
T KOG1159|consen 347 EDFRSVKLPIDYLLDLLPVIRPRAFSIASSPGAHH--LELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRP 422 (574)
T ss_pred HhchhccCCHHHHHHhccccccceeeeccCCCCCc--eeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEec
Confidence 99999999999999999999999999999997643 9999999999999999999999999999999 9999999999
Q ss_pred CCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCc
Q 014605 257 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGG 334 (421)
Q Consensus 257 g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~ 334 (421)
|.+..| ..++|+||||+|||||||||++++|..++. .+..||||||+++ ||+|.+||.+..+. .
T Consensus 423 g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~ 488 (574)
T KOG1159|consen 423 GTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------A 488 (574)
T ss_pred CccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------h
Confidence 999999 779999999999999999999999998654 4569999999999 99999999998766 4
Q ss_pred EEEEeccCCCCcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 014605 335 FYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 413 (421)
Q Consensus 335 ~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~ 413 (421)
.+.|||||+++|.||||.|++.++.+|+++.+ +++|||||+++.|+++|+++|.+|+.+++|.++|.|. |++.|++.+
T Consensus 489 ~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ 567 (574)
T KOG1159|consen 489 FHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTR 567 (574)
T ss_pred hhhhcccccccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhc
Confidence 45699999999999999999999999999985 9999999999999999999999999999999777777 999999999
Q ss_pred CEEEeec
Q 014605 414 RYHVEAW 420 (421)
Q Consensus 414 Ry~~dvW 420 (421)
||+.|+|
T Consensus 568 ryq~ETW 574 (574)
T KOG1159|consen 568 RYQQETW 574 (574)
T ss_pred cccccCC
Confidence 9999999
No 2
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=7.1e-82 Score=643.73 Aligned_cols=383 Identities=37% Similarity=0.691 Sum_probs=350.3
Q ss_pred cee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCC-CCceEEEeeCCccCCCC
Q 014605 23 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKNYLP 100 (421)
Q Consensus 23 ~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~-~~~~v~~~~~~~~~~~~ 100 (421)
.|. +|++|++||++ ++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++ +++.|++.........
T Consensus 5 ~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~- 82 (416)
T cd06204 5 PFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASK- 82 (416)
T ss_pred CeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccccc-
Confidence 355 99999999999 8999999999998778999999999999999999999999999999 8898888654321111
Q ss_pred CccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 101 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 101 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
..++|.++|++++|++||||++ +|++.||+.||.||+|+.+|++|.+|++ +|.++|.+|+.++++|++|+|.+||
T Consensus 83 ---~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~ 157 (416)
T cd06204 83 ---KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFP 157 (416)
T ss_pred ---CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCc
Confidence 2346889999999999999999 9999999999999999999999999999 9999999999999999999999999
Q ss_pred CCC---CCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccC--------------
Q 014605 181 SVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-------------- 243 (421)
Q Consensus 181 s~~---~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-------------- 243 (421)
+++ +|+++|++.+|+++||+|||||+|..+++.++|||++|+|+++.++.+.|+||+||+++.
T Consensus 158 s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~ 237 (416)
T cd06204 158 SAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYL 237 (416)
T ss_pred ccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccccccc
Confidence 999 999999999999999999999999888899999999999999888889999999999876
Q ss_pred -------CCCCceEEEEeecCCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCC-Ccccc
Q 014605 244 -------PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLY 313 (421)
Q Consensus 244 -------~~~G~~v~i~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly 313 (421)
+ |+.|.+.++.|.|.+| +..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|
T Consensus 238 ~~~~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly 315 (416)
T cd06204 238 SGPRKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIY 315 (416)
T ss_pred ccccccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccch
Confidence 7 9999999999999999 66799999999999999999999987543211 24799999999999 49999
Q ss_pred HHHHHHhhhcCCCccccCCCcEEEEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 014605 314 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 393 (421)
Q Consensus 314 ~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~ 393 (421)
++||++|.+..+++ +++++|||+++.++|||+.|.+..+.+++++.+++.|||||++..|+++|.++|.+|+++
T Consensus 316 ~~el~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~ 389 (416)
T cd06204 316 KDELEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAE 389 (416)
T ss_pred HHHHHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHH
Confidence 99999998873456 899999999877999999999988899988877899999999844999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCEEEeec
Q 014605 394 EGEASRDSAANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 394 ~~~~~~~~a~~~l~~l~~~~Ry~~dvW 420 (421)
++++++++|++|+++|+++|||++|||
T Consensus 390 ~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 390 QGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred hCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999
No 3
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=6.4e-82 Score=640.96 Aligned_cols=376 Identities=31% Similarity=0.594 Sum_probs=341.2
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCC--CCceEEEeeC--Ccc--CCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHK--EMK--NYL 99 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~--~~~~v~~~~~--~~~--~~~ 99 (421)
.|++|++||+++++++++||+|++.+++++|+|||+|+|+|+|++++|++++++||++ +++.++++.. ... ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd06203 1 PISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKV 80 (398)
T ss_pred CcccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccccccc
Confidence 3789999999999999999999998778999999999999999999999999999999 7788887641 111 122
Q ss_pred CCccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhC
Q 014605 100 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 179 (421)
Q Consensus 100 ~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f 179 (421)
..++|.++|++++|++||||++ +|+++||+.||+||+|+.+|++|.+|++.+|.++|.+|+.+.++|++|+|++|
T Consensus 81 ----~~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f 155 (398)
T cd06203 81 ----PVHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAF 155 (398)
T ss_pred ----CCCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhC
Confidence 2346788999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccC-----CCCCceEEEEe
Q 014605 180 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWF 254 (421)
Q Consensus 180 ~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~i~~ 254 (421)
|++++|++++++.+|+++||+|||||+|..+++.++|+|+++.+++ .|+||+||++++ + |+.|.+.+
T Consensus 156 ~s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~ 227 (398)
T cd06203 156 PSCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYL 227 (398)
T ss_pred CCCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEE
Confidence 9999999999999999999999999999877899999999987654 699999999987 8 99999999
Q ss_pred e-cCCCCCC-C-CCCCeEEEeCCCcchhHHHHHHHHHHhcC---CCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCc
Q 014605 255 Q-KGSLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVF 327 (421)
Q Consensus 255 ~-~g~F~lp-~-~~~piimIa~GTGIAPf~s~l~~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l 327 (421)
+ .|.|.+| + ..+|+||||+|||||||+||++++..... .+..++++||||||+++ |++|++||++|.+. |.+
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~ 306 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GIL 306 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCC
Confidence 4 6789998 5 67899999999999999999999876321 11248999999999995 99999999999987 666
Q ss_pred cccCCCcEEEEeccCCC---CcccchhhHHHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 014605 328 SEAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 403 (421)
Q Consensus 328 ~~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~ 403 (421)
. ++++||||+++ .++||||.|.++.+++++++. +++.|||||++..|+++|+++|.+|+.+++|+++++|+
T Consensus 307 ~-----~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~ 381 (398)
T cd06203 307 T-----RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAK 381 (398)
T ss_pred c-----eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4 89999999887 589999999999999999875 48999999997689999999999999999999999999
Q ss_pred HHHHHHHHCCCEEEeec
Q 014605 404 NWLKALQRAGRYHVEAW 420 (421)
Q Consensus 404 ~~l~~l~~~~Ry~~dvW 420 (421)
+|+++|+++|||++|+|
T Consensus 382 ~~~~~l~~~gRy~~dvw 398 (398)
T cd06203 382 KLLARLRKEDRYLEDVW 398 (398)
T ss_pred HHHHHHHHcCCeeeecC
Confidence 99999999999999999
No 4
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.9e-81 Score=633.67 Aligned_cols=378 Identities=43% Similarity=0.737 Sum_probs=346.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCCccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 105 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~~~~~~ 105 (421)
.|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.+++++.... .. ..
T Consensus 1 ~v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~-~~----~~ 75 (382)
T cd06207 1 KVTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQ-RG----KP 75 (382)
T ss_pred CcceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccc-cc----CC
Confidence 37899999999999999999999987899999999999999999999999999999999999988753311 11 23
Q ss_pred CCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCCCCCCC
Q 014605 106 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 185 (421)
Q Consensus 106 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~s~~~p 185 (421)
++|.|+|++++|++||||++ +|++++|+.||.||+|+.+|++|..+++.++.+.|.+| ++++++|+|.+||++++|
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~ 151 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPT 151 (382)
T ss_pred CCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCC
Confidence 46889999999999999999 99999999999999999999999999999999999888 789999999999999999
Q ss_pred HHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCC-CC
Q 014605 186 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP 264 (421)
Q Consensus 186 ~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~ 264 (421)
++.|++.+|+++||+|||||+|..+++.++|+|+++.|.+..++.+.|+||+||+++++ |+.|.+.+|.|.|.+| +.
T Consensus 152 ~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~~~ 229 (382)
T cd06207 152 LEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPKDP 229 (382)
T ss_pred HHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCCCC
Confidence 99999999999999999999998778999999999999988788889999999999999 9999999999999999 66
Q ss_pred CCCeEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCC-CccccHHHHHHhhhcCCCccccCCCcEEEEeccC
Q 014605 265 SVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 342 (421)
Q Consensus 265 ~~piimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~ 342 (421)
.+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +... ++++||||+
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~Srd 303 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFSRD 303 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEecCC
Confidence 899999999999999999999987642111 24899999999999 599999999999987 5543 899999999
Q ss_pred CCCcccchhhHHHcHHHHHHHhcCC-CEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 014605 343 QPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 343 ~~~k~yVqd~l~~~~~~v~~~l~~~-~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 420 (421)
++.++|||+.+.+..+.+++++.++ +.|||||++..|+++|+++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 304 ~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 304 QPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8889999999999989999988765 49999999933999999999999999999999999999999999999999999
No 5
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=5.1e-81 Score=635.54 Aligned_cols=384 Identities=33% Similarity=0.587 Sum_probs=341.0
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCCCHHHHHHHHHHcCCCC--CceEEEeeCCccCCC---
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMKNYL--- 99 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~--~~~v~~~~~~~~~~~--- 99 (421)
+|++|++||++++.|+++||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++.. ++.+.++........
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47899999999999999999999985 689999999999999999999999999999854 567777542221110
Q ss_pred -CCccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhh
Q 014605 100 -PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 178 (421)
Q Consensus 100 -~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~ 178 (421)
..+....++.++|++++|++||||++ +|++.||+.||.||+|+.+|++|..|++ +.+.|.+|+.++++|++|+|++
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~ 157 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE 157 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence 00112235669999999999999999 9999999999999999999999999997 7889999999999999999999
Q ss_pred CCCCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCC--CCccCCccchhhhccCCCCCceEEEEeec
Q 014605 179 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK 256 (421)
Q Consensus 179 f~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 256 (421)
||++++|+++|++.+|+++||+|||||+|..+++.++|+|+++.|.+.. ++.+.|+||+||+++++ |+.|.+.++.
T Consensus 158 f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~ 235 (406)
T cd06202 158 FPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS 235 (406)
T ss_pred CCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEee
Confidence 9999999999999999999999999999987789999999999998754 34678999999999999 9999999864
Q ss_pred -CCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhc-----CCCCCCCEEEEEcccCC-CccccHHHHHHhhhcCCCcc
Q 014605 257 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFS 328 (421)
Q Consensus 257 -g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~-----~~~~~~~~~L~~G~R~~-~d~ly~del~~~~~~~g~l~ 328 (421)
+.|.+| +..+|+||||+||||||||||++++.... .....++++||||||++ .|++|++||++|.+. |.+.
T Consensus 236 ~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~ 314 (406)
T cd06202 236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT 314 (406)
T ss_pred CCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc
Confidence 589999 77799999999999999999999986431 11134899999999999 499999999999988 6664
Q ss_pred ccCCCcEEEEeccCCC-CcccchhhHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014605 329 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 406 (421)
Q Consensus 329 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l 406 (421)
++++||||++. .++||||.|.++.+.+++++ ..++.|||||++ .|+++|.++|.+|++++++++.++|++|+
T Consensus 315 -----~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~ 388 (406)
T cd06202 315 -----EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFI 388 (406)
T ss_pred -----eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999875 58999999999999999988 459999999998 89999999999999999999999999999
Q ss_pred HHHHHCCCEEEeecC
Q 014605 407 KALQRAGRYHVEAWS 421 (421)
Q Consensus 407 ~~l~~~~Ry~~dvWs 421 (421)
++|+++|||++|||+
T Consensus 389 ~~l~~~gRy~~dvw~ 403 (406)
T cd06202 389 LKLRDENRYHEDIFG 403 (406)
T ss_pred HHHHHcCCeEEEecc
Confidence 999999999999996
No 6
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.6e-82 Score=654.59 Aligned_cols=385 Identities=38% Similarity=0.713 Sum_probs=352.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEE--EeeCCccCCCCCcc
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALIT--VQHKEMKNYLPDIH 103 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~--~~~~~~~~~~~~~~ 103 (421)
.++.|..|..+.+.+.++|++++..++++.|+||||++|+|.|+.+.|++++++|+++++..+. +......+..|.+.
T Consensus 249 ~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (645)
T KOG1158|consen 249 LVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKK 328 (645)
T ss_pred hhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCcccc
Confidence 6777777887778899999999999889999999999999999999999999999999774443 33322111244444
Q ss_pred CCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCCCCC
Q 014605 104 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ 183 (421)
Q Consensus 104 ~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~s~~ 183 (421)
+.+++.++|++++|+||+||++ +|+++++..||.||+|+.||++|+.|++..|..+|.+|+....+|++|+|.+||+|+
T Consensus 329 ~~p~~~~~t~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~k 407 (645)
T KOG1158|consen 329 PHPFPLPTTLRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCK 407 (645)
T ss_pred CCCCCCCCcHHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCC
Confidence 6778999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCC-CccCCccchhhhccCCCCCceEE--EEeecCCCC
Q 014605 184 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--i~~~~g~F~ 260 (421)
+|+++|+..+|.++||+|||||||..+++.+++++.+|+|.+..+ ..+.|+||+||+++++ |+.+. +....+.|+
T Consensus 408 pP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s~fr 485 (645)
T KOG1158|consen 408 PPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKSMFR 485 (645)
T ss_pred CCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeeccccee
Confidence 999999999999999999999999999999999999999999875 6778999999999999 99998 566678999
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC---CCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcE
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 335 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~ 335 (421)
+| ++.+||||||+||||||||||+|+|......+ ..+ +|||||||+++ |++|++||+++.+. |.++ ++
T Consensus 486 lp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~-----~l 558 (645)
T KOG1158|consen 486 LPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT-----RL 558 (645)
T ss_pred cCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch-----hh
Confidence 99 89999999999999999999999999876543 224 99999999999 99999999999777 8887 89
Q ss_pred EEEeccCC-CCcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 014605 336 YVAFSRKQ-PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 413 (421)
Q Consensus 336 ~~a~Sr~~-~~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~ 413 (421)
.+||||++ +.|.||||.|++++++||+++.+ +++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++
T Consensus 559 ~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~ 638 (645)
T KOG1158|consen 559 DVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSK 638 (645)
T ss_pred eeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhcc
Confidence 99999998 78999999999999999999966 99999999996699999999999999999999999999999999999
Q ss_pred CEEEeec
Q 014605 414 RYHVEAW 420 (421)
Q Consensus 414 Ry~~dvW 420 (421)
||++|||
T Consensus 639 Ry~~DVw 645 (645)
T KOG1158|consen 639 RYIEDVW 645 (645)
T ss_pred ccccccC
Confidence 9999999
No 7
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-80 Score=643.07 Aligned_cols=365 Identities=40% Similarity=0.711 Sum_probs=342.6
Q ss_pred Cccee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCC
Q 014605 21 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 99 (421)
Q Consensus 21 ~~~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~ 99 (421)
+..|. .+..|++|+..+++++++||+|++++++++|+|||+++|||+|+++.|+++|+.+||++++.|.+.
T Consensus 219 ~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-------- 290 (587)
T COG0369 219 PAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-------- 290 (587)
T ss_pred cCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC--------
Confidence 44566 999999999999999999999999988999999999999999999999999999999999877331
Q ss_pred CCccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhC
Q 014605 100 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 179 (421)
Q Consensus 100 ~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f 179 (421)
+.++++.++|++|+||+. .| |+|+..++.|+.++..++.|+.++ ..++..|.. +++++|+|++|
T Consensus 291 --------~~~~~~~~~l~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f 354 (587)
T COG0369 291 --------GETLPLVEALKSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDF 354 (587)
T ss_pred --------CCcchHHHHHHHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhc
Confidence 478899999999999999 77 999999999999999999999887 566777776 89999999999
Q ss_pred CCCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC-C
Q 014605 180 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-S 258 (421)
Q Consensus 180 ~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~ 258 (421)
|++++|+++|+..+|+++||+|||||++..+++++||||++|+|.++ ++.+.|+||+||+++.+ .|+.|.|+++.+ +
T Consensus 355 ~~~~l~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~-~g~~i~v~v~~n~n 432 (587)
T COG0369 355 PPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLE-EGDTIPVFVQPNKN 432 (587)
T ss_pred cccCCCHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhc-CCCeEEEEeccCCc
Confidence 99999999999999999999999999999999999999999999998 45899999999997543 299999999877 8
Q ss_pred CCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEE
Q 014605 259 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFY 336 (421)
Q Consensus 259 F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~ 336 (421)
|++| ++.+||||||+||||||||||+|+|...+.+ |++|||||||+.+ ||+|++||++|.+. |.++ +++
T Consensus 433 f~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~ 503 (587)
T COG0369 433 FRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLD 503 (587)
T ss_pred cccCCCCCCceEEEcCCCCchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEE
Confidence 9999 7779999999999999999999999999877 7999999999988 99999999999998 9776 999
Q ss_pred EEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 014605 337 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 416 (421)
Q Consensus 337 ~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~ 416 (421)
.|||||+.+|.||||+|++++++||+|+.+++.|||||+++.|+++|.++|.+|+.+.++++.|+|++++++|++++||+
T Consensus 504 ~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~ 583 (587)
T COG0369 504 LAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQ 583 (587)
T ss_pred EEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCcee
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred Eeec
Q 014605 417 VEAW 420 (421)
Q Consensus 417 ~dvW 420 (421)
+|||
T Consensus 584 ~DVy 587 (587)
T COG0369 584 RDVY 587 (587)
T ss_pred eecC
Confidence 9999
No 8
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=6.2e-79 Score=617.14 Aligned_cols=373 Identities=30% Similarity=0.556 Sum_probs=339.0
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCCccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 105 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~~~~~~ 105 (421)
+|++|++||+++++++|+||+|+++ ++++|+|||+|+|+|+|++++|+++|++||+++++.|++.+......+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~------ 73 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGL------ 73 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCC------
Confidence 5899999999999999999999997 589999999999999999999999999999999999988763322233
Q ss_pred CCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCCCCCCC
Q 014605 106 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 185 (421)
Q Consensus 106 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~s~~~p 185 (421)
+++.|+|++++|++|+||++ +|+++||+.||+||+|+.+|++|..+++ ++|.+++.++++|++|+|.+||++++|
T Consensus 74 p~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~~----~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 74 PLGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLAG----EAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhhh----hHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 35789999999999999999 9999999999999999999999998853 678888989999999999999999999
Q ss_pred HHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCC-CccCCccchhhhccCCCCCceEEEE--eecCCCCCC
Q 014605 186 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLPRP 262 (421)
Q Consensus 186 ~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~--~~~g~F~lp 262 (421)
++++++.+|+++||+|||||+|..+++.++|+|+++++.++.+ +.+.|.||+||+++++ |+.|.+. ++.|.|.+|
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~l~ 226 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFRPP 226 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccCCC
Confidence 9999999999999999999999777889999999999887654 5678999999999999 9999976 456899998
Q ss_pred -CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCC-CccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 263 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 263 -~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
+..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +++ +++++|
T Consensus 227 ~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~a~ 299 (384)
T cd06206 227 SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRRAY 299 (384)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEEEe
Confidence 67789999999999999999999987642211 23789999999999 599999999999986 888 999999
Q ss_pred ccCCCC-cccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Q 014605 340 SRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGR 414 (421)
Q Consensus 340 Sr~~~~-k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~----~~~~~~a~~~l~~l~~~~R 414 (421)
||++.. ++|||+.|.+..+.+++++.+++.||||||+ .|+++|.++|.+++.+.+ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998764 8999999999888899888779999999999 699999999999999999 9999999999999999999
Q ss_pred EEEeec
Q 014605 415 YHVEAW 420 (421)
Q Consensus 415 y~~dvW 420 (421)
|++|+|
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 9
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=5.4e-76 Score=620.94 Aligned_cols=360 Identities=30% Similarity=0.510 Sum_probs=329.7
Q ss_pred ccee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCC
Q 014605 22 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 100 (421)
Q Consensus 22 ~~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~ 100 (421)
+.|. +|++|++||+++++++||||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 236 ~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~--------- 306 (600)
T PRK10953 236 APLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD--------- 306 (600)
T ss_pred CCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC---------
Confidence 4455 999999999999999999999999888999999999999999999999999999999999888763
Q ss_pred CccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 101 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 101 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
..++|++++|++|+||+. |++.||+.++.++.++. |..+.. +.+.+..|.. +++++|+|++||
T Consensus 307 -------~~~~tl~~~l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~ 369 (600)
T PRK10953 307 -------GKTLPLAEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP 369 (600)
T ss_pred -------CCCCCHHHHHHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC
Confidence 246799999999999999 57899999999998754 444443 5566777764 699999999998
Q ss_pred CCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeec-CC
Q 014605 181 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK-GS 258 (421)
Q Consensus 181 s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~-g~ 258 (421)
++++.++++..+|+++||+|||||+|..++++++|+|++|+|.. .++.+.|+||+||+ ++++ |+.|.+.++. +.
T Consensus 370 -~~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~ 445 (600)
T PRK10953 370 -AQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDN 445 (600)
T ss_pred -CCCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCc
Confidence 78999999999999999999999999877899999999999986 47788999999998 4999 9999999976 58
Q ss_pred CCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEE
Q 014605 259 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFY 336 (421)
Q Consensus 259 F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~ 336 (421)
|++| ++.+|+||||+||||||||||++++...+.. +++|||||||++. ||+|++||++|.+. |.++ +++
T Consensus 446 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~ 516 (600)
T PRK10953 446 FRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RID 516 (600)
T ss_pred ccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEE
Confidence 9999 7889999999999999999999999887655 8999999999966 99999999999998 8886 899
Q ss_pred EEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 014605 337 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 416 (421)
Q Consensus 337 ~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~ 416 (421)
+||||++.+|+||||+|.++.+++|+++.++++|||||+++.|+++|.++|.+|++++++++.++|++|+++|+++|||+
T Consensus 517 ~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~ 596 (600)
T PRK10953 517 LAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ 596 (600)
T ss_pred EEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCee
Confidence 99999998899999999999999999998899999999987899999999999999999999999999999999999999
Q ss_pred Eeec
Q 014605 417 VEAW 420 (421)
Q Consensus 417 ~dvW 420 (421)
+|||
T Consensus 597 ~Dvy 600 (600)
T PRK10953 597 RDVY 600 (600)
T ss_pred eecC
Confidence 9999
No 10
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=2.3e-75 Score=585.91 Aligned_cols=354 Identities=33% Similarity=0.588 Sum_probs=320.3
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCCccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 105 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~~~~~~ 105 (421)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|++++|++++++||+++++.|++
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 57899999999999999999999987789999999999999999999999999999999887642
Q ss_pred CCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC--CCC
Q 014605 106 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ 183 (421)
Q Consensus 106 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~--s~~ 183 (421)
+++.++|++++|++|+||++ + .+..|+.||+++.++++|.. ++.+.|.+ .++++|+|++|| +++
T Consensus 66 ~~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 VGGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred CCCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 12678999999999999999 4 44558899999888888875 57777654 589999999999 999
Q ss_pred CCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhcc-CCCCCceEEEEeec-CCCCC
Q 014605 184 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQK-GSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~i~~~~-g~F~l 261 (421)
+|+++++..+|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|+||+||+++ ++ |+.|.+.++. |.|.+
T Consensus 132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l 208 (360)
T cd06199 132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL 208 (360)
T ss_pred CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence 9999999999999999999999998778999999999999874 466889999999975 58 9999999865 58999
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
| ++.+|+||||+|||||||+||++++...... ++++||||||+++ |++|++||+++.+. +... ++++||
T Consensus 209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~ 279 (360)
T cd06199 209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF 279 (360)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence 9 6689999999999999999999999876544 8999999999985 99999999999987 4433 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 014605 340 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 419 (421)
Q Consensus 340 Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 419 (421)
||++.+++|||+.+.++.+.+++++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|+
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999998887789999999987899999999999999999999999999999999999999999
Q ss_pred c
Q 014605 420 W 420 (421)
Q Consensus 420 W 420 (421)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 11
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=2.2e-74 Score=611.12 Aligned_cols=360 Identities=34% Similarity=0.586 Sum_probs=329.3
Q ss_pred ccee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCC
Q 014605 22 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 100 (421)
Q Consensus 22 ~~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~ 100 (421)
+.|. +|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 233 ~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~--------- 303 (597)
T TIGR01931 233 NPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG--------- 303 (597)
T ss_pred CCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC---------
Confidence 3466 999999999999999999999999988999999999999999999999999999999999988763
Q ss_pred CccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 101 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 101 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
..++|++++|++|+||+. +++.||+.+|+++.|+..++.| + +.+.+.+|+. +++++|+|.+||
T Consensus 304 -------~~~~tl~~~l~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp 366 (597)
T TIGR01931 304 -------GKTIPLFEALITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP 366 (597)
T ss_pred -------CCCcCHHHHHHhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC
Confidence 256899999999999999 5799999999999998665433 3 5677888885 789999999999
Q ss_pred CCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeec-CC
Q 014605 181 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GS 258 (421)
Q Consensus 181 s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~-g~ 258 (421)
++++.++++.++|++.||+|||||+|..++++++|+|++|+|.. .++.+.|.||+||++ +++ |+.|.+.++. |.
T Consensus 367 -~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~ 442 (597)
T TIGR01931 367 -ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDN 442 (597)
T ss_pred -CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCc
Confidence 89999999999999999999999999877899999999999985 477889999999997 999 9999999965 58
Q ss_pred CCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEE
Q 014605 259 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFY 336 (421)
Q Consensus 259 F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~ 336 (421)
|++| ++.+|+||||+||||||||||++++..++.. +++|||||||+.. |++|++||++|.+. +.++ +++
T Consensus 443 F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~ 513 (597)
T TIGR01931 443 FRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMD 513 (597)
T ss_pred ccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeE
Confidence 9999 7789999999999999999999999887655 8999999999955 99999999999988 7775 899
Q ss_pred EEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 014605 337 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 416 (421)
Q Consensus 337 ~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~ 416 (421)
+||||++..++||||+|.++.+++++++.++++|||||++..|+++|.++|.+|+.++++++.++|++|+++|+++|||+
T Consensus 514 ~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~ 593 (597)
T TIGR01931 514 LAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQ 593 (597)
T ss_pred EEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCee
Confidence 99999887899999999999999999988899999999555999999999999999999999999999999999999999
Q ss_pred Eeec
Q 014605 417 VEAW 420 (421)
Q Consensus 417 ~dvW 420 (421)
+|||
T Consensus 594 ~DVy 597 (597)
T TIGR01931 594 RDVY 597 (597)
T ss_pred eecC
Confidence 9999
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=5.1e-74 Score=594.77 Aligned_cols=360 Identities=33% Similarity=0.582 Sum_probs=321.9
Q ss_pred Cccee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCC
Q 014605 21 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 99 (421)
Q Consensus 21 ~~~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~ 99 (421)
.+.|. +|++|++||+++++++++||+||+++++++|+|||+|+|+|.|++++|+++|++||+++++.+
T Consensus 166 ~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----------- 234 (530)
T PRK06214 166 DNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----------- 234 (530)
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----------
Confidence 34566 999999999999999999999999978899999999999999999999999999999987533
Q ss_pred CCccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhC
Q 014605 100 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 179 (421)
Q Consensus 100 ~~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f 179 (421)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+.. ....+++|+|++|
T Consensus 235 ---------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~f 297 (530)
T PRK06214 235 ---------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKF 297 (530)
T ss_pred ---------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhC
Confidence 36799999999999999 65 789999999988766 7788888763322221 1246899999999
Q ss_pred CCCCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecC-
Q 014605 180 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG- 257 (421)
Q Consensus 180 ~s~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g- 257 (421)
|++++|++++++.+|+++||+|||||+|..+++.++|+|++|+|.. .++.+.|+||+||+ ++++ |+.|.++++.+
T Consensus 298 p~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~ 374 (530)
T PRK06214 298 PGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAH 374 (530)
T ss_pred CCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCC
Confidence 9999999999999999999999999999777899999999999985 46778999999997 6999 99999988443
Q ss_pred CCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcE
Q 014605 258 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 335 (421)
Q Consensus 258 ~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~ 335 (421)
.|.+| +..+|+||||+||||||||||++++...... ++++||||||+.. |++|++||++|.+. |.++ ++
T Consensus 375 gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l 445 (530)
T PRK06214 375 GFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RL 445 (530)
T ss_pred CCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EE
Confidence 49999 6778999999999999999999998876544 8999999998876 99999999999987 6664 79
Q ss_pred EEEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 014605 336 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 415 (421)
Q Consensus 336 ~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry 415 (421)
+++|||++.+++|||+.|.++.+++++++.++++|||||+++.|.++|+++|.+|++++++++.++|++|+++|+++|||
T Consensus 446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY 525 (530)
T PRK06214 446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525 (530)
T ss_pred EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 99999999889999999999999999998779999999998679999999999999999999999999999999999999
Q ss_pred EEeec
Q 014605 416 HVEAW 420 (421)
Q Consensus 416 ~~dvW 420 (421)
++|||
T Consensus 526 ~~Dvw 530 (530)
T PRK06214 526 QADVY 530 (530)
T ss_pred EEecC
Confidence 99999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=4.4e-49 Score=369.73 Aligned_cols=211 Identities=45% Similarity=0.772 Sum_probs=180.1
Q ss_pred cee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCCC
Q 014605 23 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 101 (421)
Q Consensus 23 ~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~~ 101 (421)
.|. +|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|++.........
T Consensus 8 p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~~-- 85 (219)
T PF00667_consen 8 PFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNSV-- 85 (219)
T ss_dssp -EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSSC--
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccccccc--
Confidence 355 99999999999999999999999998899999999999999999999999999999999999999876543111
Q ss_pred ccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCCC
Q 014605 102 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 181 (421)
Q Consensus 102 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~s 181 (421)
..+++.++||+++|++|+||++ +|++.||+.||.||+|+.+|++|++|++.+|.+.|.+|+.+.++|++|+|.+||+
T Consensus 86 --~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps 162 (219)
T PF00667_consen 86 --KPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPS 162 (219)
T ss_dssp --CSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTT
T ss_pred --ccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCcc
Confidence 3457899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchh
Q 014605 182 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 238 (421)
Q Consensus 182 ~~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~ 238 (421)
+++|+++|++.+|+++||+|||||||..+++.++|||++|+|++..++.+.|+||+|
T Consensus 163 ~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 163 CKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp BTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred cCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999999999999999999999999999998899999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=4.3e-42 Score=342.95 Aligned_cols=265 Identities=26% Similarity=0.445 Sum_probs=223.8
Q ss_pred ccee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCccCCCC
Q 014605 22 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 100 (421)
Q Consensus 22 ~~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~ 100 (421)
..|. +|++|.+|+.++...+++||+|+.+ ..+.|.||.++.|.|+..
T Consensus 89 ~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~------------------------------- 136 (367)
T PLN03115 89 EPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGI------------------------------- 136 (367)
T ss_pred CCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCc-------------------------------
Confidence 4466 9999999999888899999999976 578999999999965421
Q ss_pred CccCCCCCccccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 101 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 101 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
|..+
T Consensus 137 ---------------------~~~g------------------------------------------------------- 140 (367)
T PLN03115 137 ---------------------DKNG------------------------------------------------------- 140 (367)
T ss_pred ---------------------CCCC-------------------------------------------------------
Confidence 0001
Q ss_pred CCCCCHHHHHHhcCCCCCCceeeccCCCC---CCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC
Q 014605 181 SVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 257 (421)
Q Consensus 181 s~~~p~~~ll~~lp~~~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 257 (421)
.+..+|+|||||++.. .++.++|+|+.+.|.+..+....|.||+||+++++ ||.|.+.+|.|
T Consensus 141 -------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v~GP~G 205 (367)
T PLN03115 141 -------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKITGPVG 205 (367)
T ss_pred -------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEEEeecC
Confidence 1135799999999843 25789999999999876677789999999999999 99999999999
Q ss_pred CCC-CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC--CCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCC
Q 014605 258 SLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG 332 (421)
Q Consensus 258 ~F~-lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~ 332 (421)
.|. +| ++.+|+||||+|||||||+||++++......+ ..++++||||||+.+|++|.+||++|.+.++ ++
T Consensus 206 ~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f----- 280 (367)
T PLN03115 206 KEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF----- 280 (367)
T ss_pred CceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE-----
Confidence 754 56 66789999999999999999999876543211 1368999999999999999999999988755 78
Q ss_pred CcEEEEeccCCC----CcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014605 333 GGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 407 (421)
Q Consensus 333 ~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~ 407 (421)
+++.++||++. .++|||+.|.++.+++++++.. +++|||||++ .|.++|.++|.++....+ + +++++++
T Consensus 281 -~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~~~~~~ 354 (367)
T PLN03115 281 -RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DWFEYKK 354 (367)
T ss_pred -EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cHHHHHH
Confidence 99999999865 5789999999999999988854 7899999998 999999999999998764 3 5788999
Q ss_pred HHHHCCCEEEeec
Q 014605 408 ALQRAGRYHVEAW 420 (421)
Q Consensus 408 ~l~~~~Ry~~dvW 420 (421)
+|+++|||+.|+|
T Consensus 355 ~lk~~~r~~~e~y 367 (367)
T PLN03115 355 QLKKAEQWNVEVY 367 (367)
T ss_pred HHHHCCCeEEecC
Confidence 9999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=3.5e-39 Score=311.38 Aligned_cols=229 Identities=43% Similarity=0.738 Sum_probs=200.0
Q ss_pred CCCHHHHHHhcCC-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC-CCC
Q 014605 183 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLP 260 (421)
Q Consensus 183 ~~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~ 260 (421)
..|||++...+|. ..+|+|||+|+|...++.++|+|+.+.++........|.+|+||+++++ |+.|.+.+|.| .|.
T Consensus 32 ~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~ 109 (267)
T cd06182 32 YQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFR 109 (267)
T ss_pred cCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCccc
Confidence 3588887777664 4689999999986556899999999887665556677999999999999 99999999999 899
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCC-CccccHHHHHHhhhcCCCccccCCCcEEE
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV 337 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~del~~~~~~~g~l~~~~~~~~~~ 337 (421)
++ +...|+||||+|||||||+++++++....... ..++++||||+|+. +|++|++||++|.+.+.++ ++++
T Consensus 110 l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~ 183 (267)
T cd06182 110 LPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDV 183 (267)
T ss_pred CCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEE
Confidence 98 66789999999999999999999988631100 12789999999999 7999999999999874567 8999
Q ss_pred EeccCCCC-cccchhhHHHcHHHHHHHhcCCCEEEEeCCCCc-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 014605 338 AFSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 415 (421)
Q Consensus 338 a~Sr~~~~-k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~-m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry 415 (421)
++||++.. ++||++.+.+..+.+++++.+++.||||||+ . |+++|.++|.+++++.++++.++|++++++|+++|||
T Consensus 184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 99997764 7899999988777777777667799999999 7 9999999999999999999999999999999999999
Q ss_pred EEeec
Q 014605 416 HVEAW 420 (421)
Q Consensus 416 ~~dvW 420 (421)
++|+|
T Consensus 263 ~~~~~ 267 (267)
T cd06182 263 VEDVW 267 (267)
T ss_pred EEecC
Confidence 99999
No 16
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1e-36 Score=297.24 Aligned_cols=223 Identities=29% Similarity=0.465 Sum_probs=184.8
Q ss_pred CCHHHHHHhcCC--------CCCCceeeccCCCC---CCCeEEEEEEEEEecCCCC-CccCCccchhhhccCCCCCceEE
Q 014605 184 MPIDWLVQLVPP--------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP 251 (421)
Q Consensus 184 ~p~~~ll~~lp~--------~~pR~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~ 251 (421)
.|||++...+|. ...|+|||||+|.. +++.++|+|+++.+.++.. ..+.|.+|+||+++++ |+.|.
T Consensus 42 ~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~ 119 (286)
T cd06208 42 LEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDVQ 119 (286)
T ss_pred cCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEEE
Confidence 578876665543 24799999999854 2479999999987654332 4556999999999999 99999
Q ss_pred EEeecCCCCC-C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcC--CCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-C
Q 014605 252 AWFQKGSLPR-P-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-V 326 (421)
Q Consensus 252 i~~~~g~F~l-p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~ 326 (421)
+.+|.|.|.+ | +...|+||||+|||||||+||++++..... .+..++++||||+|+++|++|++||+++.+.++ +
T Consensus 120 v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~ 199 (286)
T cd06208 120 ITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDN 199 (286)
T ss_pred EEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCc
Confidence 9999998755 4 456799999999999999999999886521 011268999999999999999999999998655 6
Q ss_pred ccccCCCcEEEEeccCCC----CcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHH
Q 014605 327 FSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 401 (421)
Q Consensus 327 l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~ 401 (421)
+ ++++++||+++ .++||++.+.+..+.+++.+.. ++.||+|||+ .|+++|.+.|.+++. +..+
T Consensus 200 ~------~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~~ 267 (286)
T cd06208 200 F------RIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGLA 267 (286)
T ss_pred E------EEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccHH
Confidence 7 89999999754 4789999999877777777764 5699999998 999999999999987 2357
Q ss_pred HHHHHHHHHHCCCEEEeec
Q 014605 402 AANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 402 a~~~l~~l~~~~Ry~~dvW 420 (421)
|++++++|+++|||..|+|
T Consensus 268 ~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 268 WEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 9999999999999999999
No 17
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=1.5e-35 Score=301.84 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=173.4
Q ss_pred CCCceeeccCCCCC---CCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCCC-CCCCCeEEE
Q 014605 197 KTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP-PPSVPLILI 271 (421)
Q Consensus 197 ~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~lp-~~~~piimI 271 (421)
..|+|||+|++... .+.++|+|+++.. ++.+..+.|.+|+||+++++ ||.|.+.+|.|. |.+| ...+|+|||
T Consensus 197 ~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v~GP~G~~f~lp~~~~~~lllI 273 (411)
T TIGR03224 197 YARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQVIGPFGSTFLMPNHPESSIMMI 273 (411)
T ss_pred cceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEEEeccCCcccCCCCCCCCEEEE
Confidence 56999999987321 2579999998864 33456678999999999999 999999999996 6677 456899999
Q ss_pred eCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCC-Ccccch
Q 014605 272 GPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-QKVYVQ 350 (421)
Q Consensus 272 a~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~-~k~yVq 350 (421)
|+|||||||++|++++......+..++++||||+|+.+|++|.+||+++.+. .+ ++++++||+++ .++|||
T Consensus 274 agGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~--~~------~~~~~~sr~~~~~~g~V~ 345 (411)
T TIGR03224 274 CTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKD--FI------DINFAFSRTPEQPKRYVQ 345 (411)
T ss_pred ecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhc--Cc------eEEEEeccCCccCcccHh
Confidence 9999999999999998764211123799999999999999999999999865 34 67789998654 589999
Q ss_pred hhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 014605 351 HKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 351 d~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 420 (421)
+.+++..+.+++++.. ++.||+|||+ .|.++|.++|.++..+. ++. +++++++|+++|||+.|+|
T Consensus 346 d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~-~~~---~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 346 DAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATN-GLS---WETLEPRLRAEGRLHLETY 411 (411)
T ss_pred hHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHc-CcC---HHHHHHHHHHCCCeEEecC
Confidence 9999888888877754 6899999998 99999999999999655 444 4579999999999999999
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1e-36 Score=300.01 Aligned_cols=224 Identities=27% Similarity=0.413 Sum_probs=183.2
Q ss_pred CCHHHHHHhcCCC---------CCCceeeccCCCCC---CCeEEEEEEEEEecCCCCC----ccCCccchhhhccCCCCC
Q 014605 184 MPIDWLVQLVPPL---------KTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG 247 (421)
Q Consensus 184 ~p~~~ll~~lp~~---------~pR~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G 247 (421)
.|||++...+|.. ..|+|||||+|..+ +..++|+|+++.|.++... .+.|.+|+||+++++ |
T Consensus 58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G 135 (307)
T PLN03116 58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--G 135 (307)
T ss_pred ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--C
Confidence 5788766665531 47999999999432 2389999998876554322 268999999999999 9
Q ss_pred ceEEEEeecCCCCC-C--CCCCCeEEEeCCCcchhHHHHHHHHHHhcCC--CCCCCEEEEEcccCCCccccHHHHHHhhh
Q 014605 248 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSL 322 (421)
Q Consensus 248 ~~v~i~~~~g~F~l-p--~~~~piimIa~GTGIAPf~s~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~del~~~~~ 322 (421)
+.|.+.+|.|.|.+ | +...|+||||+|||||||+||+++....... +..++++||||+|+.+|++|.+||++|.+
T Consensus 136 d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~ 215 (307)
T PLN03116 136 DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLK 215 (307)
T ss_pred CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHH
Confidence 99999999999876 4 3457999999999999999999988764421 11268999999999999999999999988
Q ss_pred cCC-CccccCCCcEEEEeccCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCC
Q 014605 323 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 397 (421)
Q Consensus 323 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~ 397 (421)
.++ ++ +++.++||++. .++||++.|.+..+.++..+..++.+|+|||+ .|++++.++|.+++.+. |+
T Consensus 216 ~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~-g~ 287 (307)
T PLN03116 216 DYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEER-GE 287 (307)
T ss_pred hCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHc-Cc
Confidence 755 68 89999999764 36799999988776666656567899999998 99999999999988765 44
Q ss_pred CHHHHHHHHHHHHHCCCEEEeec
Q 014605 398 SRDSAANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 398 ~~~~a~~~l~~l~~~~Ry~~dvW 420 (421)
+|+++++.|+++|||++|+|
T Consensus 288 ---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 ---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ---cHHHHHHHHHHcCceEEecC
Confidence 36689999999999999999
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.5e-36 Score=289.66 Aligned_cols=209 Identities=30% Similarity=0.405 Sum_probs=177.2
Q ss_pred CCHHHHHHhcCC-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeec-CCCC
Q 014605 184 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~-g~F~ 260 (421)
.|||++...++. ..+|+|||||+|. ++.++|+|+.+... ..+.|.+|+||++ +++ |+.|.+.+|. |.|.
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F~ 104 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGFH 104 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCccc
Confidence 488887776663 6789999999985 47899999776321 1245999999986 589 9999999975 5798
Q ss_pred CCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
+|+..+|+||||+|||||||+||++++..... ++++||||+|+.+ |++|.+||++|.+.++++ ++++++
T Consensus 105 ~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~~ 174 (245)
T cd06200 105 LPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLAF 174 (245)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEEE
Confidence 87656899999999999999999999876542 5799999999996 999999999998874555 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 014605 340 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 419 (421)
Q Consensus 340 Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 419 (421)
|+++..++||++.+.+..+.+++++..++.+|+|||++.|+++|+++|.+++++ +.+++|+++|||.+|+
T Consensus 175 s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~~~d~ 244 (245)
T cd06200 175 SRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGE----------EAVEALLAAGRYRRDV 244 (245)
T ss_pred ccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHH----------HHHHHHHHCCCeEEec
Confidence 998877899999999887777776666889999999778999999999999975 2488999999999999
Q ss_pred c
Q 014605 420 W 420 (421)
Q Consensus 420 W 420 (421)
|
T Consensus 245 ~ 245 (245)
T cd06200 245 Y 245 (245)
T ss_pred C
Confidence 9
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=2.4e-34 Score=280.76 Aligned_cols=188 Identities=32% Similarity=0.547 Sum_probs=162.4
Q ss_pred CCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEe-ecCCCCCCCCCCCeEEEeCCCc
Q 014605 198 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPRPPPSVPLILIGPGTG 276 (421)
Q Consensus 198 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~-~~g~F~lp~~~~piimIa~GTG 276 (421)
+|+|||+|+|. ++.++|+|+ +.+.|.+|+||+++++ |+.|.+.+ +.|.|.+++..+|+||||+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk---------~~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~~~~~~~lvlIAgGtG 166 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVR---------KHPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRPAKGAAPVILIGAGTG 166 (289)
T ss_pred CceEecCCCCC--CCeEEEEEE---------eCCCccchhhHhhCCC--cCEEEEEeccCCCccCCCCCCCEEEEecCcC
Confidence 69999999984 478999994 3467999999999999 99999986 5778988766789999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCCcccchhhHHH
Q 014605 277 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 355 (421)
Q Consensus 277 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 355 (421)
||||++|+++... . .+++||||+|+++ |++|++||++|.+.+.++ +++.++||++. ++|||+.+..
T Consensus 167 IaP~~s~l~~~~~---~---~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s~~~~-~g~v~~~l~~ 233 (289)
T cd06201 167 IAPLAGFIRANAA---R---RPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFSRTPD-GAYVQDRLRA 233 (289)
T ss_pred HHHHHHHHHhhhc---c---CCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEECCCCC-cccchhHHHH
Confidence 9999999997631 2 6899999999996 999999999998874556 78899999764 7899999988
Q ss_pred cHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 014605 356 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 420 (421)
Q Consensus 356 ~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvW 420 (421)
..+.+.+++.+++.||+|||+ .|+++|.+.|.+|+.+++ + -+..|+++|||.+|+|
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 777777777778999999998 999999999999998653 2 2788899999999998
No 21
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.95 E-value=1.2e-27 Score=223.79 Aligned_cols=184 Identities=27% Similarity=0.410 Sum_probs=148.0
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 260 (421)
.|||++...+|. ...|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.++++ |+.|.+.+|.|.|.
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 91 (223)
T cd00322 24 KPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDFF 91 (223)
T ss_pred CCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCcccc
Confidence 589998888875 67899999999853 47899999653 46999999999999 99999999999986
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
++ ...++++|||+|||||||+++++++...... ++++|+||+|+.+|++|++||+++.+.+.++ ++++++
T Consensus 92 ~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 162 (223)
T cd00322 92 LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLAL 162 (223)
T ss_pred cCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEe
Confidence 65 6678999999999999999999999876543 7899999999999999999999999865677 899999
Q ss_pred ccCCCCcccchhhHHHcHHHHHH-Hh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQPQKVYVQHKMLEQSQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~~k~yVqd~l~~~~~~v~~-~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++++....+.+..+... +.+.. .. ..+..+|+|||+ .|++.+++.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~~ 213 (223)
T cd00322 163 SRESEAKLGPGGRIDRE-AEILALLPDDSGALVYICGPP-AMAKAVREALVSL 213 (223)
T ss_pred cCCCCCCCcccceeeHH-HHHHhhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 98766443333322211 11111 11 237899999998 8999998888654
No 22
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=1.7e-27 Score=223.99 Aligned_cols=181 Identities=26% Similarity=0.348 Sum_probs=149.7
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 261 (421)
..|+|++...+|....|+|||+|.+.. .+.++|+|+. ...|.+|++|.. +++ |+.|.+.+|.|.|.+
T Consensus 26 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 93 (224)
T cd06189 26 FLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFL 93 (224)
T ss_pred cCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEe
Confidence 358898888888778999999999853 5789999954 356999999874 999 999999999999887
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ ...++++|||+|||||||++++++....... .+++|+||+|+..|++|++||+++.+.++++ ++..++|
T Consensus 94 ~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 164 (224)
T cd06189 94 REDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLS 164 (224)
T ss_pred ccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeC
Confidence 7 5578999999999999999999998876543 6899999999999999999999999866788 8888899
Q ss_pred cCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++++ .++||++.+.+... -..+..+|+|||+ .|++++.+.|.+.
T Consensus 165 ~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp~-~m~~~~~~~l~~~ 212 (224)
T cd06189 165 EPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGSP-EMVYAARDDFVEK 212 (224)
T ss_pred CCCcCCccccccHHHHHHhhcc-----CccccEEEEECCH-HHHHHHHHHHHHc
Confidence 8643 46788776654311 0136789999998 8999998888653
No 23
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.95 E-value=1.2e-27 Score=228.79 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=143.6
Q ss_pred CCHHHHHHhcC--C-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeec-CCC
Q 014605 184 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~F 259 (421)
.|||++...++ . ...|+|||+|+|.. +.++|+|+. .+.|.+|+||+++++ |+.|.+.+|. |.|
T Consensus 32 ~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gp~~g~f 98 (248)
T PRK10926 32 TAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVT---------VPEGKLSPRLAALKP--GDEVQVVSEAAGFF 98 (248)
T ss_pred CCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEE---------eCCCCcChHHHhCCC--CCEEEEecCCCcce
Confidence 58888766653 2 24699999999853 589999854 367999999999999 9999999976 556
Q ss_pred CCC-C-CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCCCcEE
Q 014605 260 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFY 336 (421)
Q Consensus 260 ~lp-~-~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~~~~~ 336 (421)
.++ . ..+|++|||+|||||||+||++++...... .+++|+||+|+.+|++|++||+++.+.++ ++ ++.
T Consensus 99 ~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~ 169 (248)
T PRK10926 99 VLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RIQ 169 (248)
T ss_pred EccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EEE
Confidence 666 3 347999999999999999999998655443 68999999999999999999999988753 78 899
Q ss_pred EEeccCCC---CcccchhhHHHc-HHHHHH-Hh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 337 VAFSRKQP---QKVYVQHKMLEQ-SQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 337 ~a~Sr~~~---~k~yVqd~l~~~-~~~v~~-~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++||++. .+++|++.+.+. ...... .+ .++..+|+|||+ .|++++.+.|.+.
T Consensus 170 ~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~ 228 (248)
T PRK10926 170 TVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_pred EEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence 99998653 257887766432 111111 11 236889999999 9999998877654
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.95 E-value=4.1e-27 Score=229.30 Aligned_cols=179 Identities=21% Similarity=0.336 Sum_probs=140.9
Q ss_pred CCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCCCcc
Q 014605 198 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC 277 (421)
Q Consensus 198 pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GTGI 277 (421)
.|+|||+|+|.. .+.++|+|++........+.+.|.+|+||+++++ |+.|.+.+|.|.|.+++..+|+||||+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI 162 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM 162 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence 499999999853 5789999976533221113457999999999999 9999999999999887556799999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCC--C----Ccccchh
Q 014605 278 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--P----QKVYVQH 351 (421)
Q Consensus 278 APf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~--~----~k~yVqd 351 (421)
|||++|++++...... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++|+++ + .++||++
T Consensus 163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~ 234 (283)
T cd06188 163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ 234 (283)
T ss_pred hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence 9999999987664321 15899999999999999999999998776788 8888888754 1 3678888
Q ss_pred hHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 352 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 352 ~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
.+.+.. +.... ..+..+|+|||+ .|++++.+.|.+.
T Consensus 235 ~~~~~~--~~~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~ 271 (283)
T cd06188 235 VLLENY--LKKHPAPEDIEFYLCGPP-PMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHH--hccCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 765431 11111 125689999998 9999998888664
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=4e-27 Score=223.56 Aligned_cols=182 Identities=20% Similarity=0.315 Sum_probs=148.8
Q ss_pred CCCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCCC
Q 014605 183 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 183 ~~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 260 (421)
..|||++...+|.. ..|+|||+|.+.. .+.++|+|+. .+.|.+|+||. .+++ |+.|.+.+|.|.|.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 103 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF 103 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence 35889888877765 5899999999853 4789999954 35799999997 6999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
++ ...+++||||+|||||||++++++...++.. .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++
T Consensus 104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 174 (238)
T cd06211 104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL 174 (238)
T ss_pred ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence 77 5558999999999999999999998876544 6899999999999999999999998776778 888899
Q ss_pred ccCCC------CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
||++. .++|+++.+.+.... ..++..+|+|||+ .|.+++.+.|.+.
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~~ 226 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQG 226 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 98642 357777765543110 0136789999998 9999999888654
No 26
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=4.6e-27 Score=221.56 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=147.4
Q ss_pred CCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 261 (421)
.|||++...+|.. ..|+|||+|.+.. +.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 32 ~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~ 98 (228)
T cd06209 32 LPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFYL 98 (228)
T ss_pred CCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCccccee
Confidence 5788887777765 4799999998854 789999843 357999999997 999 999999999999877
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
+...++++|||+||||||+++++++....... ++++|+||+|+.+|++|.+||+++.+.++++ ++.+++|+
T Consensus 99 ~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s~ 169 (228)
T cd06209 99 REVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVAD 169 (228)
T ss_pred cCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEcC
Confidence 64458999999999999999999998876543 7899999999999999999999998776778 88889998
Q ss_pred CCC---CcccchhhHHHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHHHH
Q 014605 342 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 342 ~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
+.. .++||++.+.+. .+. .+..+|+|||+ .|++++++.|.+
T Consensus 170 ~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp~-~m~~~~~~~l~~ 214 (228)
T cd06209 170 PDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGPP-PMVDAVRSWLDE 214 (228)
T ss_pred CCccCCCcCCccHHHHHh------hccCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 654 456888776543 122 35789999998 999999888865
No 27
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=4e-27 Score=222.47 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=147.3
Q ss_pred CCCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCC
Q 014605 183 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 183 ~~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 260 (421)
..|||++...+|.. .+|+|||+|.+.. .+.++|+|+. ...|.+|.||++ +++ |+.|.+.+|.|.|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~ 91 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY 91 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence 45899988888877 7899999998854 5789999953 356999999986 799 99999999999987
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
++ +..++++|||+|||||||++++++....... ...+++|+||+|+.+|++|.+||+++.+.+.++ ++++++
T Consensus 92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 164 (232)
T cd06190 92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV 164 (232)
T ss_pred ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence 76 5567999999999999999999998875210 127899999999999999999999999874567 888888
Q ss_pred ccCCC--------CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~--------~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
|+++. .++|+++.+.+.... ...+..+|+|||+ .|.+++.+.|.+.
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~ 218 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMIE 218 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHHh
Confidence 87643 245777665443111 0236899999998 8999888777664
No 28
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=4.5e-27 Score=222.50 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=145.7
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhh-hccCCCCCceEEEEeecCCCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l 261 (421)
..|||++...++....|+|||+|.|.. ++.++|+|+.+ ..|..|.++ .++++ |+.|.+.+|.|.|.+
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~ 97 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL 97 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence 368999888888778899999999853 47899998542 335545454 68999 999999999999877
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ +..+|+||||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 168 (232)
T PRK08051 98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE 168 (232)
T ss_pred cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence 6 5568999999999999999999999876544 7899999999999999999999999876778 8888888
Q ss_pred cCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHH-HHH
Q 014605 341 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EEI 390 (421)
Q Consensus 341 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L-~~i 390 (421)
++++ +++||++.+.+.... ..+..+|+|||+ .|+++|.+.| .+.
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~m~~~v~~~l~~~~ 217 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGRF-EMAKIARELFCRER 217 (232)
T ss_pred CCCCCcccceeeehHHHHhhccC-----cccCEEEEECCH-HHHHHHHHHHHHHc
Confidence 7654 467777765432110 125689999999 9999998877 553
No 29
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=5e-27 Score=223.19 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=157.1
Q ss_pred CCCHHHHHHhcCCC----CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEE-eecC
Q 014605 183 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG 257 (421)
Q Consensus 183 ~~p~~~ll~~lp~~----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g 257 (421)
..|+|++...++.. ..|+|||+|.+.. +.++|+|++ ...|.+|+||+++++ |+.|.+. +|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G 91 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIIL---------VPDGPLTPRLFKLKP--GDTIYVGKKPTG 91 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEE---------ecCCCCchHHhcCCC--CCEEEECcCCCC
Confidence 35888877776643 5699999999854 789999854 356999999999999 9999999 9999
Q ss_pred CCCCC-C-CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhc-CCCccccCCCc
Q 014605 258 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG 334 (421)
Q Consensus 258 ~F~lp-~-~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~-~g~l~~~~~~~ 334 (421)
.|.++ . ...+++|||+|||||||++++++....... .+++|+||+|+++|++|.+||+++.+. ++++ +
T Consensus 92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~ 162 (241)
T cd06195 92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R 162 (241)
T ss_pred ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence 99887 4 468999999999999999999998765443 789999999999999999999999875 4678 8
Q ss_pred EEEEeccCCCC---cccchhhHHH-cHHHHHHH-h-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014605 335 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 408 (421)
Q Consensus 335 ~~~a~Sr~~~~---k~yVqd~l~~-~~~~v~~~-l-~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~ 408 (421)
+..++++++.. ++|+++.+.. ........ . ..+..+|+|||+ .|++++.+.|.+..... +..
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G~~~-----~~~------ 230 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKGFSK-----NHR------ 230 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcCCCc-----ccc------
Confidence 88889987653 5788887652 11111111 1 136789999999 99999988887653221 110
Q ss_pred HHHCCCEEEeec
Q 014605 409 LQRAGRYHVEAW 420 (421)
Q Consensus 409 l~~~~Ry~~dvW 420 (421)
++.++++.|.|
T Consensus 231 -~~~~~~~~E~~ 241 (241)
T cd06195 231 -RKPGNITVEKY 241 (241)
T ss_pred -CCCceEEEecC
Confidence 34577777765
No 30
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.94 E-value=6.4e-27 Score=233.59 Aligned_cols=180 Identities=19% Similarity=0.299 Sum_probs=149.3
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 261 (421)
..|||++...+|....|+|||+|+|.. .+.++|+|+. .+.|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~ 199 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFL 199 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEe
Confidence 358998888888777899999999854 4789999953 46799999997 6999 999999999999988
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ ...+|+||||+|||||||++|+++....+.. .+++||||+|+.+|+++.++|++|.++++++ +++.++|
T Consensus 200 ~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s 270 (339)
T PRK07609 200 REDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVS 270 (339)
T ss_pred cCCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEec
Confidence 7 5678999999999999999999999876544 6899999999999999999999998766788 8999999
Q ss_pred cCC------CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 341 RKQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 341 r~~------~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
|+. ..++||++.+.+.... ..+..+|+|||+ .|++++.+.|.+
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~ 319 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA 319 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 842 2467888766543111 136789999998 999999887765
No 31
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.94 E-value=1.1e-26 Score=236.73 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=143.9
Q ss_pred CCCHHHHHHhcC--C--C-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeec
Q 014605 183 QMPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 256 (421)
Q Consensus 183 ~~p~~~ll~~lp--~--~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~ 256 (421)
..|||++...++ . . .+|+|||+|+|. ++.++|+|+. .+.|.+|+||++ +++ |+.|.+.+|.
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~ 251 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPA 251 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCc
Confidence 358888877764 2 1 349999999985 3789999843 466999999986 999 9999999999
Q ss_pred CCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcE
Q 014605 257 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF 335 (421)
Q Consensus 257 g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~ 335 (421)
|.|.++ ...+|+||||+|||||||++++++....... .+++||||+|+.+|++|++||+++.+.++++ ++
T Consensus 252 G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~ 322 (399)
T PRK13289 252 GDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KA 322 (399)
T ss_pred cccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EE
Confidence 999988 5678999999999999999999998766544 7999999999999999999999998876788 89
Q ss_pred EEEeccCCCC----cccch-hhHHHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 336 YVAFSRKQPQ----KVYVQ-HKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 336 ~~a~Sr~~~~----k~yVq-d~l~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+.++|++... ..|++ ..+. .+.+.+.+. .+..+|||||+ .|++++.+.|.+.
T Consensus 323 ~~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 380 (399)
T PRK13289 323 HTWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLEL 380 (399)
T ss_pred EEEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 9999985431 11221 1111 122333333 37899999998 9999998887653
No 32
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.94 E-value=1.1e-26 Score=232.00 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=148.5
Q ss_pred CCHHHHHHhcCCCC-CCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~~-pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 261 (421)
.|||++...+|... .|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 138 ~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~l 205 (340)
T PRK11872 138 LPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFYL 205 (340)
T ss_pred CCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeEe
Confidence 68998877777654 799999999853 5889999954 46799999996 6999 999999999999988
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
+...+|+||||+|||||||++++++....... .+++||||+|+.+|++|.+||++|.+.++++ +++.+.|+
T Consensus 206 ~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s~ 276 (340)
T PRK11872 206 REVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVSK 276 (340)
T ss_pred CCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEeC
Confidence 74458999999999999999999998876543 6899999999999999999999999877888 88888887
Q ss_pred CCC----CcccchhhHHHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 342 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 342 ~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++ .++||++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 277 ~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~~ 323 (340)
T PRK11872 277 ASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDEQ 323 (340)
T ss_pred CCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 543 467888766532 122 25689999998 9999998888654
No 33
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=1.6e-26 Score=216.90 Aligned_cols=180 Identities=21% Similarity=0.257 Sum_probs=147.4
Q ss_pred CCHHHHHHhcCCCC--CCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVPPLK--TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~~~--pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 260 (421)
.|+|++...+|... .|+|||+|.+.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 92 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTFY 92 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccceE
Confidence 47888777777544 799999999854 4789999953 346999999987 999 99999999999988
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
++ ....+++|||+|||||||++++++...+... .+++|+|++|+.+|++|.+||+++.+.++++ ++.+++
T Consensus 93 ~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~ 163 (224)
T cd06187 93 LRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPVV 163 (224)
T ss_pred ecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEEe
Confidence 77 4468999999999999999999998876543 7899999999999999999999998775777 788888
Q ss_pred ccCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++++. .++|+++.+.+... -.+++.+||||++ .|++++++.|++.
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp~-~~~~~v~~~l~~~ 212 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGPP-AMVDATVDALLAR 212 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence 87543 46788777654311 0136899999998 9999998888653
No 34
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.94 E-value=1.4e-26 Score=236.56 Aligned_cols=181 Identities=20% Similarity=0.331 Sum_probs=145.8
Q ss_pred CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCCC
Q 014605 196 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 275 (421)
Q Consensus 196 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GT 275 (421)
...|+|||+|.|.. ++.++|+|+++.+....++.+.|.+|+||+++++ ||.|.+.+|.|.|.+++..+|+||||+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGt 284 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 284 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEecc
Confidence 35799999999854 5789999988766655556778999999999999 99999999999998765568999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCC------Ccccc
Q 014605 276 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 349 (421)
Q Consensus 276 GIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 349 (421)
|||||++++++....... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++|+++. .+++|
T Consensus 285 GIaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 285 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred ChhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCcccee
Confidence 999999999987764321 26899999999999999999999998877888 88999987532 35788
Q ss_pred hhhHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 350 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 350 qd~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++.+.+.. +.+.. ..+..+|+|||+ .|++++.+.|.+.
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~~ 395 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKDL 395 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 87765431 11111 136789999998 9999998887653
No 35
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.94 E-value=2.3e-26 Score=234.81 Aligned_cols=180 Identities=21% Similarity=0.356 Sum_probs=143.3
Q ss_pred CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCCCc
Q 014605 197 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 276 (421)
Q Consensus 197 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GTG 276 (421)
..|+|||+|+|.. .+.++|+|+++.+....++.+.|.+|+||+++++ ||.|.+.+|.|.|.+.+..+|++|||+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGtG 281 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 281 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCcC
Confidence 4699999999854 5789999988754443344678999999999999 999999999999987755679999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCC------Ccccch
Q 014605 277 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQ 350 (421)
Q Consensus 277 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVq 350 (421)
||||++|+++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|+++. .+++|+
T Consensus 282 IaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v~ 353 (405)
T TIGR01941 282 MAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFIH 353 (405)
T ss_pred cchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCccceeC
Confidence 99999999987654221 26899999999999999999999998776888 88889887532 356787
Q ss_pred hhHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 351 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 351 d~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+.+.+.. +.+.. ..++.+|+|||+ .|++++.+.|.+.
T Consensus 354 ~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~~ 391 (405)
T TIGR01941 354 NVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLEDL 391 (405)
T ss_pred HHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 7664321 11111 136789999998 9999998887653
No 36
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=1.9e-26 Score=217.89 Aligned_cols=180 Identities=24% Similarity=0.388 Sum_probs=146.5
Q ss_pred CCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 261 (421)
.|+|++...+|.. ..|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.+
T Consensus 31 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 98 (232)
T cd06212 31 FAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCTL 98 (232)
T ss_pred CCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCccccee
Confidence 5889887777754 5899999999854 4789999954 456999999985 999 999999999999987
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ ....++||||+|||||||++++++....... .+++|+||+|+.+|++|.+||+++.+.+.++ ++..++|
T Consensus 99 ~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 169 (232)
T cd06212 99 RESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPALS 169 (232)
T ss_pred cCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEEC
Confidence 7 5568999999999999999999998876544 6899999999999999999999998766778 7888899
Q ss_pred cCCC------CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++. ..+++++.+.+.... + ++..+|+|||+ .|++++.+.|.+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp~-~~~~~v~~~l~~~ 219 (232)
T cd06212 170 ESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGPP-PMIDAALPVLEMS 219 (232)
T ss_pred CCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8543 246776655432111 1 36789999998 9999888877654
No 37
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=1.9e-26 Score=229.55 Aligned_cols=183 Identities=15% Similarity=0.248 Sum_probs=144.9
Q ss_pred CCCHHHHHHhcCCC--CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 183 QMPIDWLVQLVPPL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 183 ~~p~~~ll~~lp~~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
..||||+...++.- ..|+|||+|.|.. .+.++|+|+ +...|.+|+||+ ++++ |+.|.+.+|.|.|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f 104 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVR---------RIDDGVGSQWLTRDVKR--GDYLWLSDAMGEF 104 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEE---------EcCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence 35899877777642 4699999999853 468999994 346799999996 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 260 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 260 ~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
.++ ....++||||+|||||||++|+++....... .+++|+||+|+.+|++|.+||+++.+.++++ ++.+.
T Consensus 105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 175 (332)
T PRK10684 105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV 175 (332)
T ss_pred ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence 987 5668999999999999999999998765544 7899999999999999999999999876777 77777
Q ss_pred eccCCCCcccchhhHHHcHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 339 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 339 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~--~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
.+++.. ++|.+..+.+. .+.+.+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 176 ~~~~~~-~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~~ 225 (332)
T PRK10684 176 AENNAT-EGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKAL 225 (332)
T ss_pred eccCCC-CCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 765432 44555444321 1222222 26789999998 9999998888664
No 38
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=2.1e-26 Score=218.02 Aligned_cols=182 Identities=17% Similarity=0.219 Sum_probs=147.2
Q ss_pred CCCHHHHHHhcCC-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCC
Q 014605 183 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 183 ~~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 260 (421)
..|||++...+|. ...|+|||+|.|.. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~ 102 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFG 102 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceee
Confidence 3588888777774 35799999999854 4789999854 356999999987 999 99999999999998
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
++ ...++++|||+|||||||+++++++...... .+++||||+|+.+|.+|.+||+++.+.++++ ++++++
T Consensus 103 l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 173 (236)
T cd06210 103 LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICV 173 (236)
T ss_pred ecCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEE
Confidence 87 4567999999999999999999998776544 6899999999999999999999999877888 899999
Q ss_pred ccCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
|++.+ .++++++.+.+.... ......+|+|||+ .|++++++.|.+.
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~~ 223 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAAREA 223 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence 87543 356676655432111 1125789999998 9999999888653
No 39
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=1.9e-26 Score=217.69 Aligned_cols=177 Identities=17% Similarity=0.315 Sum_probs=141.4
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
.|+|++...++. ..+|+|||+|.+. .+.++|+|+. ...|.+|+||+ ++++ |+.|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 95 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGHF 95 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccce
Confidence 588987776642 2479999999985 5889999954 35699999998 6999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 260 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 260 ~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
.++ ....+++|||+||||||+++++++....... .+++||||+|+++|++|++||+++.+.++++ ++..+
T Consensus 96 ~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 166 (231)
T cd06191 96 VYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLCI 166 (231)
T ss_pred EeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEE
Confidence 887 5568999999999999999999998765444 7899999999999999999999998765788 89999
Q ss_pred eccCCCC------cccchhhHHHcHHHHHHHhcC--CCEEEEeCCCCccHHHHHHHHHH
Q 014605 339 FSRKQPQ------KVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 339 ~Sr~~~~------k~yVqd~l~~~~~~v~~~l~~--~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
+||++.. ++++.+.+.+ .++.. ++.+|+|||+ .|++++++.|.+
T Consensus 167 ~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp~-~mv~~~~~~l~~ 218 (231)
T cd06191 167 FTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGPA-GMMDAVETALKE 218 (231)
T ss_pred ECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence 9986542 2233222211 12222 5799999998 999998887754
No 40
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=4.2e-26 Score=222.80 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=141.8
Q ss_pred CCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCCC
Q 014605 184 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP 262 (421)
Q Consensus 184 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~lp 262 (421)
.|+|++...+|....|+|||+|+|.. ++.++|+|+ +.|.+|+||+++++ |+.|.+.+|.|. |.++
T Consensus 39 ~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~~ 104 (289)
T PRK08345 39 KPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIR-----------RAGRVTTVIHRLKE--GDIVGVRGPYGNGFPVD 104 (289)
T ss_pred CCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEE-----------eCChHHHHHHhCCC--CCEEEEeCCCCCCCCcc
Confidence 58999887777766799999999853 578999994 23899999999999 999999999997 6665
Q ss_pred -CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 263 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 263 -~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
...+|++|||+|||||||++|++++...... ..+++|+||+|+.+|++|++||+++.+.++++ +++.++|+
T Consensus 105 ~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s~ 176 (289)
T PRK08345 105 EMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVTR 176 (289)
T ss_pred cccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEecC
Confidence 3457999999999999999999988765421 26899999999999999999999998766788 88889998
Q ss_pred CCCC---------------cccchhhHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 342 KQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 342 ~~~~---------------k~yVqd~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++.. +++|++.+.+. .. ..+..+|+|||+ .|++++.+.|.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP~-~m~~~v~~~L~~~ 234 (289)
T PRK08345 177 DPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGPP-VMYKFVFKELINR 234 (289)
T ss_pred CCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECCH-HHHHHHHHHHHHc
Confidence 5432 23333333221 11 125789999998 9999999888664
No 41
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=5.1e-26 Score=214.36 Aligned_cols=178 Identities=20% Similarity=0.338 Sum_probs=144.3
Q ss_pred CCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 261 (421)
.|||++...+|.. ..|+|||+|+|.. .+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 96 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL 96 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence 4888887777755 4899999999853 5789999853 35699999995 5999 999999999999988
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhc-CCCccccCCCcEEEEec
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~-~g~l~~~~~~~~~~a~S 340 (421)
++..+++||||+|||||||+++++++...... .+++++||+|+++|.+|.+||+++.+. .+++ +++.++|
T Consensus 97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s 167 (227)
T cd06213 97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS 167 (227)
T ss_pred CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence 74457999999999999999999998876543 689999999999999999999999864 2567 7888888
Q ss_pred cCCC------CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++++ .++++++.+.+. +..+..+|+|||+ .|++++++.|.+.
T Consensus 168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~~ 215 (227)
T cd06213 168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRAL 215 (227)
T ss_pred CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 7642 245776655432 2347899999998 9999988877653
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=1.2e-25 Score=210.93 Aligned_cols=180 Identities=21% Similarity=0.260 Sum_probs=143.4
Q ss_pred CCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCCCCC
Q 014605 184 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPRP 262 (421)
Q Consensus 184 ~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~lp 262 (421)
.|+|++...+|....|+|||+|+|.. .+.++|+|+. ...|.+|.||++ +++ |+.|.+.+|.|.|.+.
T Consensus 25 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~~ 92 (222)
T cd06194 25 LPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFYR 92 (222)
T ss_pred CCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeecc
Confidence 58898888888778899999999854 3789999843 356999999987 799 9999999999987654
Q ss_pred --CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 263 --PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 263 --~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
....+++|||+|||||||+++++++...... .+++||||+|+.+|++|++||+++.+.++++ +++.+.+
T Consensus 93 ~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 163 (222)
T cd06194 93 PEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCVS 163 (222)
T ss_pred CCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEEc
Confidence 4567999999999999999999998766544 7899999999999999999999998865778 8888888
Q ss_pred cCCCCcc--cchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQPQKV--YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~~k~--yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++.... ++.+ +.+ .+. ...+++.+|+|||+ .|++++++.|.+.
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~-~~~~~~~vyicGp~-~m~~~~~~~L~~~ 209 (222)
T cd06194 164 EGSQGDPRVRAGR-IAA---HLP-PLTRDDVVYLCGAP-SMVNAVRRRAFLA 209 (222)
T ss_pred cCCCCCcccccch-hhh---hhc-cccCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 8654321 1211 111 111 12347899999998 9999999888664
No 43
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=1.8e-25 Score=213.14 Aligned_cols=177 Identities=20% Similarity=0.318 Sum_probs=141.9
Q ss_pred CCHHHHHHhcC--C---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecC
Q 014605 184 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 257 (421)
Q Consensus 184 ~p~~~ll~~lp--~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 257 (421)
.|+|++...++ . ...|+|||+|.+.. +.++|+|+. ...|.+|+||++ +++ |+.|.|.+|.|
T Consensus 38 ~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G 104 (247)
T cd06184 38 LPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPAG 104 (247)
T ss_pred CCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCC
Confidence 57888776663 2 46799999999854 588888843 356999999997 999 99999999999
Q ss_pred CCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEE
Q 014605 258 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 336 (421)
Q Consensus 258 ~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~ 336 (421)
.|.++ ...++++|||+|||||||+++++++...... .+++||||+|++++.+|++||+++.+.++++ +++
T Consensus 105 ~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~ 175 (247)
T cd06184 105 DFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KLH 175 (247)
T ss_pred ceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EEE
Confidence 99887 4678999999999999999999999876433 7899999999999999999999998765778 899
Q ss_pred EEeccCCCC--------cccchhhHHHcHHHHHH-HhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 337 VAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 337 ~a~Sr~~~~--------k~yVqd~l~~~~~~v~~-~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
+++|++... .++++.. .+.+ ....+..+|+|||+ .|++++++.|.+
T Consensus 176 ~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~ 230 (247)
T cd06184 176 VFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKA 230 (247)
T ss_pred EEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 999986432 2333321 2222 12347899999998 999999888865
No 44
>PRK05713 hypothetical protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=221.84 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=139.5
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC-CCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~l 261 (421)
..||||+...++....|+|||+|.|.. .+.++|+|+. .+.|.+|.||.++++ |+.|.+..+.| .|.+
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~ 186 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHY 186 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEe
Confidence 358898877777667899999999854 4789999843 467999999999999 99999999886 5655
Q ss_pred C-C-CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 262 P-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 262 p-~-~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
+ + ..+|+||||+|||||||+|++++....+.. .+++|+||+|+.+|++|.+||++|.+.++++ ++..+.
T Consensus 187 ~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~ 257 (312)
T PRK05713 187 DPDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVT 257 (312)
T ss_pred cCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEE
Confidence 5 3 568999999999999999999998776544 6899999999999999999999998876788 777666
Q ss_pred ccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++ ++++.+.+.. ....+..+|+|||+ .|++++.+.|.+.
T Consensus 258 ~~------~~~~~l~~~~-----~~~~~~~vyiCGp~-~mv~~~~~~L~~~ 296 (312)
T PRK05713 258 AA------QLPAALAELR-----LVSRQTMALLCGSP-ASVERFARRLYLA 296 (312)
T ss_pred Cc------chhhhhhhcc-----CCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 53 2444332210 01235789999999 9999999888653
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.92 E-value=3.2e-25 Score=209.09 Aligned_cols=178 Identities=22% Similarity=0.326 Sum_probs=140.6
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
.|||++...+|. ...|+|||+|.|.. .+.++|+|++ ...|.+|.||+ ++++ |+.|.+.+|.|.|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~f 96 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGEF 96 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCccee
Confidence 588887766652 24699999999853 4679999854 35689999997 7999 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 260 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 260 ~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
.++ ....+++|||+|||||||++++++....... .+++||||+|+++|++|.++|+++.+.++++ ++.++
T Consensus 97 ~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~ 167 (231)
T cd06215 97 TLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHLI 167 (231)
T ss_pred EeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEEE
Confidence 887 4478999999999999999999998775543 6899999999999999999999998876778 88888
Q ss_pred eccCCC-----CcccchhhHHHcHHHHHHHhcC--CCEEEEeCCCCccHHHHHHHHHH
Q 014605 339 FSRKQP-----QKVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 339 ~Sr~~~-----~k~yVqd~l~~~~~~v~~~l~~--~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
.++++. ..+++...+ +.+.+.+ +..+|+|||+ .|++++.+.|.+
T Consensus 168 ~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~ 218 (231)
T cd06215 168 LEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAE 218 (231)
T ss_pred EccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHH
Confidence 887554 123443311 2222222 4789999998 999988887754
No 46
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=3.2e-25 Score=207.47 Aligned_cols=176 Identities=15% Similarity=0.218 Sum_probs=136.2
Q ss_pred CCCHHHHHHhcCC----CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC
Q 014605 183 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 258 (421)
Q Consensus 183 ~~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 258 (421)
..|||++...++. ...|+|||+|+|.. +.++|+|+++ ...|..|.||.++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~ 95 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA 95 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence 3688887776653 35799999999853 8899999642 123678999999999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 259 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 259 F~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
|.++ .|+||||+|||||||+++++++...+.. .+++|+||+|+.+|++|++||++|.. + ++..+
T Consensus 96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~----~------~~~~~ 159 (218)
T cd06196 96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLG----L------KFINV 159 (218)
T ss_pred eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhc----c------eEEEE
Confidence 8753 5899999999999999999999875433 67999999999999999999999853 4 67778
Q ss_pred eccCCCCcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHH
Q 014605 339 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 339 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+|++.. ..|.+..+.+ +.+.+++.. ++.+|+|||+ .|++++.+.|.+.
T Consensus 160 ~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~ 208 (218)
T cd06196 160 VTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKEL 208 (218)
T ss_pred EcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 888654 2343333321 122233333 5789999998 9999998887654
No 47
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.92 E-value=3.7e-25 Score=210.64 Aligned_cols=179 Identities=19% Similarity=0.320 Sum_probs=142.3
Q ss_pred CCHHHHHHhcC--C-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F 259 (421)
.|||++...++ . ..+|+|||+|.+....+.++|+|+. ...|.+|.||++ +++ |+.|.+.+|.|.|
T Consensus 47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 115 (243)
T cd06216 47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGDF 115 (243)
T ss_pred CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCceee
Confidence 57888777664 2 3479999999985125889999954 356999999985 899 9999999999999
Q ss_pred CCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 260 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 260 ~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
.++ +..++++|||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ ++++.
T Consensus 116 ~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 186 (243)
T cd06216 116 VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHLL 186 (243)
T ss_pred ecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEEE
Confidence 988 4478999999999999999999998776433 7899999999999999999999998665778 88888
Q ss_pred eccCCCCcccchhhHHHcHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 339 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 339 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~--~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+|++ ...+++.... +.+... +++.+|||||+ .|.+++.+.|++.
T Consensus 187 ~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~~ 232 (243)
T cd06216 187 YTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGPP-GFLDAAEELLEAA 232 (243)
T ss_pred EcCC-ccCCCCCHHH------HHHhccCcccCeEEEECCH-HHHHHHHHHHHHC
Confidence 8876 3345554321 112222 25799999998 9999998888653
No 48
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.92 E-value=5.7e-25 Score=210.84 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=145.5
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 261 (421)
..|||++...+|....|+|||+|+|.. .+.++|+|+ +.|..|+||+++++ |+.|.+.+|.|. |.+
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik-----------~~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~ 93 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIR-----------RVGRVTEALHELKP--GDTVGLRGPFGNGFPV 93 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEE-----------eCChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence 358898888888666799999999853 478999984 23889999999999 999999999997 655
Q ss_pred CC-CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p~-~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+. ..+|+||||+||||||++++++++...... ..+++|+|++|+.+|++|++||+++.+. .++ ++.+++|
T Consensus 94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s 164 (253)
T cd06221 94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD 164 (253)
T ss_pred ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence 53 668999999999999999999999875321 2689999999999999999999999987 778 8888888
Q ss_pred cCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++.+ ..+++++.+.+... ...+..+|+|||+ .|++++.+.|.+.
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~~-----~~~~~~vyicGp~-~mv~~~~~~L~~~ 212 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELTL-----DPDNTVAIVCGPP-IMMRFVAKELLKL 212 (253)
T ss_pred CCCCCccCCccccchhHHhcCC-----CcCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 7543 35677765544311 0147889999998 9999998888765
No 49
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=8.5e-25 Score=219.35 Aligned_cols=184 Identities=17% Similarity=0.278 Sum_probs=140.8
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
.||||+...++. ...|+|||+|.|. ++.++|+|+. ...|.+|+||. ++++ |+.|.+.+|.|.|
T Consensus 34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~---------~~~G~~S~~l~~~l~~--Gd~v~v~gP~G~f 100 (352)
T TIGR02160 34 APGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKK---------IPGGLFSTWANDEIRP--GDTLEVMAPQGLF 100 (352)
T ss_pred CCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEE---------eCCCcchHHHHhcCCC--CCEEEEeCCceee
Confidence 588888777642 2469999999984 4789999954 35699999996 7999 9999999999999
Q ss_pred CCC-C--CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCCCcE
Q 014605 260 PRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 335 (421)
Q Consensus 260 ~lp-~--~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~~~~ 335 (421)
.++ . ..+++||||+|||||||++|+++....... .+++|+||+|+++|++|.+||+++.+.++ ++ ++
T Consensus 101 ~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~ 171 (352)
T TIGR02160 101 TPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------HL 171 (352)
T ss_pred ecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------EE
Confidence 876 3 247999999999999999999998776444 78999999999999999999999987645 47 88
Q ss_pred EEEeccCCCCcccchhhHH-HcHHH-HHHHh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 336 YVAFSRKQPQKVYVQHKML-EQSQR-IWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 336 ~~a~Sr~~~~k~yVqd~l~-~~~~~-v~~~l--~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+.++|++.....+.+..+. ....+ +.++. .....+|+|||+ .|++++++.|.+.
T Consensus 172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 229 (352)
T TIGR02160 172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL 229 (352)
T ss_pred EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8899986542222222221 11111 11111 125689999998 9999999988765
No 50
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.92 E-value=8.7e-25 Score=206.65 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=142.1
Q ss_pred CCHHHHHHhcC--CC--CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCC
Q 014605 184 MPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS 258 (421)
Q Consensus 184 ~p~~~ll~~lp--~~--~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~ 258 (421)
.|||++...+| .- ..|+|||+|.+.. .+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.
T Consensus 32 ~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G~ 99 (235)
T cd06217 32 LAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIGT 99 (235)
T ss_pred CCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCcee
Confidence 57888877775 22 3499999999854 4689999954 356899999985 899 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEE
Q 014605 259 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 337 (421)
Q Consensus 259 F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~ 337 (421)
|.++ ...++++|||+||||||+++++++....... .+++++||+|+.+|.+|.+||.++.+.++++ +++.
T Consensus 100 ~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~~ 170 (235)
T cd06217 100 FTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVTE 170 (235)
T ss_pred eEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEE
Confidence 8876 4468999999999999999999998876544 7899999999999999999999998865678 8888
Q ss_pred EeccCCC-----CcccchhhHHHcHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 338 AFSRKQP-----QKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 338 a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l--~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++||+.. .++++.+.+.+ +.+ ..+..+|||||+ .|.+++.+.|.+.
T Consensus 171 ~~s~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~v~icGp~-~m~~~v~~~l~~~ 223 (235)
T cd06217 171 ALTRAAPADWLGPAGRITADLIA------ELVPPLAGRRVYVCGPP-AFVEAATRLLLEL 223 (235)
T ss_pred EeCCCCCCCcCCcCcEeCHHHHH------hhCCCccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8998622 23444433211 111 136899999998 9999999888654
No 51
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.91 E-value=1.9e-24 Score=202.11 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=138.1
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
.|||++...++. ...|+|||+|.|.. .+.++|+|+. .|.+|.+|. ++++ |+.|.+.+|.|.|
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~~ 89 (216)
T cd06198 24 RAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGRF 89 (216)
T ss_pred CCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCCC
Confidence 588988777764 57899999998853 4799999942 378999999 8999 9999999999999
Q ss_pred CCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 260 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 260 ~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
.++...++++|||+||||||+++++++....... ++++|+||+|+.+|.+|.+||+++.+.+ ++ ++++..
T Consensus 90 ~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~-~~------~~~~~~ 159 (216)
T cd06198 90 TFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAAA-GV------VLHVID 159 (216)
T ss_pred cccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHhc-Ce------EEEEEe
Confidence 8884378999999999999999999998876543 6899999999999999999999998873 66 777766
Q ss_pred ccCCCCcccchhhHHHcHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~~~k~yVqd~l~~~~~~v~~~l--~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++++. .......+ .+.. ..+..+|+|||+ .|++++++.|.+.
T Consensus 160 ~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp~-~m~~~v~~~l~~~ 203 (216)
T cd06198 160 SPSDG-RLTLEQLV-------RALVPDLADADVWFCGPP-GMADALEKGLRAL 203 (216)
T ss_pred CCCCc-ccchhhhh-------hhcCCCcCCCeEEEECcH-HHHHHHHHHHHHc
Confidence 65433 21221211 0111 136899999998 9999998888763
No 52
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=1.8e-24 Score=206.55 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=136.0
Q ss_pred CCCHHHHHHhcCC----CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC
Q 014605 183 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 258 (421)
Q Consensus 183 ~~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 258 (421)
..|+|++...+|. ...|+|||+|.+.. .+.++|+|+. .|.+|+||.++++ |+.|.+.+|.|.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~--Gd~v~i~gP~G~ 90 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKA--GDELDVLGPLGN 90 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCC--CCEEEEEecCCC
Confidence 3578877776663 46799999998843 4789999853 3788999999999 999999999985
Q ss_pred -CCCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEE
Q 014605 259 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 337 (421)
Q Consensus 259 -F~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~ 337 (421)
|.+++...++||||+|||||||++++++..... .+++||||+|+.+|.+|++||+++.. ++.+
T Consensus 91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~eL~~l~~-----------~~~~ 154 (246)
T cd06218 91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG-----IKVTVLLGFRSADDLFLVEEFEALGA-----------EVYV 154 (246)
T ss_pred CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC-----CceEEEEEccchhhhhhHHHHHhhCC-----------cEEE
Confidence 777665789999999999999999999987632 68999999999999999999999853 2222
Q ss_pred EeccCC--CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 014605 338 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 391 (421)
Q Consensus 338 a~Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~ 391 (421)
++++. +.++||++.+.+.... ..+..||+|||+ .|++++++.|.+..
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~G 203 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAERG 203 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 23322 2467888877655322 147899999998 99999999987643
No 53
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.91 E-value=2.5e-24 Score=207.56 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=137.4
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 261 (421)
..|||++...+|...+|+|||++.+ .+.++|+|+ +.|.+|+||.++++ |+.|.+.+|.|+ |.+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 96 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIR-----------RVGKVTDEIFNLKE--GDKLFLRGPYGNGFPV 96 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEE-----------eCCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence 3589998888887777999999875 478999994 23899999999999 999999999987 777
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ ...+|+||||+|||||||++++++....... ..+++|+||+|+.+|++|++||++|.+. + ++.++++
T Consensus 97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~---~------~~~~~~~ 165 (263)
T PRK08221 97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK---I------NLILTLD 165 (263)
T ss_pred CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc---C------cEEEEec
Confidence 6 4567999999999999999999998764321 2589999999999999999999999875 3 3445566
Q ss_pred cCCC----CcccchhhHHHcHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~----~k~yVqd~l~~~~~~v~~~l~--~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++.. ..+++++.+.+. .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~~ 214 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLKR 214 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 5432 345666544332 111 36789999999 9999998888654
No 54
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.91 E-value=3.6e-24 Score=203.30 Aligned_cols=181 Identities=22% Similarity=0.315 Sum_probs=140.7
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 259 (421)
.|+|++...+|. ..+|+|||+|.+.. +.++|+|++ ...|.+|.||. ++++ |+.+.+.+|.|.|
T Consensus 34 ~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~ 100 (241)
T cd06214 34 RPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKR---------VPGGRFSNWANDELKA--GDTLEVMPPAGRF 100 (241)
T ss_pred CCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEE---------cCCCccchhHHhccCC--CCEEEEeCCcccc
Confidence 578888777762 36799999998754 479999854 35699999997 7999 9999999999999
Q ss_pred CCC-C-CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCCCcEE
Q 014605 260 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFY 336 (421)
Q Consensus 260 ~lp-~-~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~~~~~ 336 (421)
.++ + ...++||||+|||||||+++++++...... .+++|+||+|+..|++|.+||+++.+.++ ++ ++.
T Consensus 101 ~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~ 171 (241)
T cd06214 101 TLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TVI 171 (241)
T ss_pred ccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EEE
Confidence 887 4 478999999999999999999998876533 78999999999999999999999976644 67 777
Q ss_pred EEeccCCCCc----ccchhhHHHcHHHHH-HHh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 337 VAFSRKQPQK----VYVQHKMLEQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 337 ~a~Sr~~~~k----~yVqd~l~~~~~~v~-~~l--~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
.++|+++... +.+.+.+. .... +.. .++..||+|||+ .|++++.+.|++.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~~ 228 (241)
T cd06214 172 HVLSREQGDPDLLRGRLDAAKL---NALLKNLLDATEFDEAFLCGPE-PMMDAVEAALLEL 228 (241)
T ss_pred EEecCCCCCcccccCccCHHHH---HHhhhhhcccccCcEEEEECCH-HHHHHHHHHHHHc
Confidence 7888765432 23322111 1111 111 236899999999 8999998887653
No 55
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.91 E-value=3.5e-24 Score=202.15 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=142.0
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 260 (421)
.|+|++...+|. ...|+|||+|.+.. .+.++|+|+. ...|.+|.||+++++ |+.|.+.+|.|.|.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~~ 97 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKFE 97 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCcccee
Confidence 588888877774 46899999998854 4689999953 346999999999999 99999999999998
Q ss_pred CC-CCC-CCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcC-CCccccCCCcEEE
Q 014605 261 RP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYV 337 (421)
Q Consensus 261 lp-~~~-~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~-g~l~~~~~~~~~~ 337 (421)
++ ... .++||||+||||||+++++++....... ..+++|+||+|+.++.+|.+||+++.+.+ +++ ++.+
T Consensus 98 ~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~ 169 (234)
T cd06183 98 YKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVHY 169 (234)
T ss_pred ecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEEE
Confidence 76 444 7999999999999999999998765311 26899999999999999999999998753 467 7888
Q ss_pred EeccCCC----CcccchhhHHHcHHHHHHHhc----CCCEEEEeCCCCccHH-HHHHHHHH
Q 014605 338 AFSRKQP----QKVYVQHKMLEQSQRIWNLLL----SKASIYVAGSATKMPS-DVWSTFEE 389 (421)
Q Consensus 338 a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~----~~~~iyVCG~~~~m~~-~V~~~L~~ 389 (421)
++++.+. ..+++++.+.+. .+. .+..+|+|||+ .|++ ++++.|.+
T Consensus 170 ~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~ 223 (234)
T cd06183 170 VLSRPPEGWKGGVGFITKEMIKE------HLPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE 223 (234)
T ss_pred EEcCCCcCCccccceECHHHHHH------hCCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 8887543 245666543221 221 36789999998 9999 88888754
No 56
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.90 E-value=1.1e-23 Score=195.97 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=133.8
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccC-Cccchhhh-ccCCCCCceEEEEeecCCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 260 (421)
..|||++...+|....|+|||+|.+.. .+.++|+|+.+ .. +.+|.||+ .+++ |+.|.+.+|.|.|.
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~ 93 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP 93 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence 458899888888777899999999854 48899999542 33 34899997 5899 99999999999998
Q ss_pred CCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 261 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 261 lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
++...+++||||+||||||+++++++..... .+++|+||+|+.+|.+|.+||+++. . .++ .+.++
T Consensus 94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~~~--------~~~~~ 158 (211)
T cd06185 94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-DRV--------HLHFD 158 (211)
T ss_pred CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-CcE--------EEEEC
Confidence 8744679999999999999999999887632 6799999999999999999999987 2 334 44456
Q ss_pred cCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+.. .+.++++.+.+ ..++..+|+|||+ .|++++++.|.+.
T Consensus 159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp~-~m~~~~~~~l~~~ 198 (211)
T cd06185 159 DEG-GRLDLAALLAA--------PPAGTHVYVCGPE-GMMDAVRAAAAAL 198 (211)
T ss_pred CCC-CccCHHHHhcc--------CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 543 23344443322 1236899999998 9999998888664
No 57
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.90 E-value=9.4e-24 Score=203.30 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=135.5
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 261 (421)
..|+|++...+|...+|+|||+|.+ .+.++|+|+ +.|.+|++|+++++ ||.|.+.+|.|. |.+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk-----------~~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~ 94 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIR-----------RVGKVTDEVFTLKE--GDNLFLRGPYGNGFDV 94 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEE-----------eCchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence 4689998888887778999999853 478999994 23899999999999 999999999997 777
Q ss_pred C-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 262 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 262 p-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
+ ...+|++|||+||||||++++++++...... ..+++|+||+|+.+|++|++||++|.+. .++ ..+++
T Consensus 95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~ 163 (261)
T TIGR02911 95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD 163 (261)
T ss_pred CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence 6 4568999999999999999999987654321 2589999999999999999999999875 333 33444
Q ss_pred cCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 341 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 341 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
++.+ ..+++++.+.+.. +.+ ..+..+|+|||+ .|++++++.|.+.
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp~-~mv~~~~~~L~~~ 212 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGPP-IMMKFTVQELLKK 212 (261)
T ss_pred CCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECCH-HHHHHHHHHHHHc
Confidence 4322 2456665443310 000 126789999999 9999998887664
No 58
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.90 E-value=1.1e-23 Score=206.63 Aligned_cols=194 Identities=17% Similarity=0.137 Sum_probs=138.7
Q ss_pred CCHHHHHHhcCC-------CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeec
Q 014605 184 MPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 256 (421)
Q Consensus 184 ~p~~~ll~~lp~-------~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 256 (421)
.|+|++...++. ...|+||++|++. .++.++|+|+.+.-..+......|.+|+||.++++ ||.|.+.+|.
T Consensus 65 ~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~ 141 (300)
T PTZ00319 65 PIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGPV 141 (300)
T ss_pred ccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEccc
Confidence 478887776652 2469999999984 35889999976421111111246999999999999 9999999999
Q ss_pred CCCCCC-C---------------CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHh
Q 014605 257 GSLPRP-P---------------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 320 (421)
Q Consensus 257 g~F~lp-~---------------~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~ 320 (421)
|.|.+. + ...+++|||+|||||||++++++....... ..++.|+||+|+.+|.+|.+||+++
T Consensus 142 G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~~ 219 (300)
T PTZ00319 142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDEA 219 (300)
T ss_pred eeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHH
Confidence 998653 1 124899999999999999999988765321 1579999999999999999999996
Q ss_pred hhcCCCccccCCCcEEEEeccCCC-----CcccchhhHHHcH-HHHH-H-HhcCCCEEEEeCCCCccHH-HHHHHHHHH
Q 014605 321 SLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQS-QRIW-N-LLLSKASIYVAGSATKMPS-DVWSTFEEI 390 (421)
Q Consensus 321 ~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~-~~v~-~-~l~~~~~iyVCG~~~~m~~-~V~~~L~~i 390 (421)
.+. +++ +++.+.++++. ..++|+..+.+.. .... + ...++..+|+|||+ .|++ .+.+.|++.
T Consensus 220 ~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 220 AKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNLEKI 290 (300)
T ss_pred hhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCH-HHHHHHHHHHHHHc
Confidence 554 778 88888887432 3567765433221 1000 0 00024689999998 8887 456666443
No 59
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.90 E-value=1.7e-23 Score=200.98 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=138.0
Q ss_pred CCCHHHHHHhcCCC---CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecCC
Q 014605 183 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 258 (421)
Q Consensus 183 ~~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 258 (421)
.-|||++...++.- ..|.|||+|+|.. ++.+.|+|++ ...|..|+||+ ++++ ||.|.+..|.|.
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~ 102 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGD 102 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCC
Confidence 35889888888755 7899999999965 4689999954 35599999999 8999 999999999999
Q ss_pred CCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEE
Q 014605 259 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 337 (421)
Q Consensus 259 F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~ 337 (421)
|.++ .+..+++|||+|+|||||+||++.....+. .++.++|++|+++|..|+|| +.+.+++++.. .+..
T Consensus 103 F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~----~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~ 172 (266)
T COG1018 103 FVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP----ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGL 172 (266)
T ss_pred ccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC----CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEE
Confidence 9998 466699999999999999999999887642 57999999999999999999 88877666542 3444
Q ss_pred EeccCCCCcccchhhHHHcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHH
Q 014605 338 AFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVS 392 (421)
Q Consensus 338 a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~ 392 (421)
..++... .+|..- ..+...... +..+|+|||. .|.++|+..+.+...
T Consensus 173 ~~~~~~~-~g~~~~------~~l~~~~~~~~r~~y~CGp~-~fm~av~~~l~~~g~ 220 (266)
T COG1018 173 YTERGKL-QGRIDV------SRLLSAAPDGGREVYLCGPG-PFMQAVRLALEALGV 220 (266)
T ss_pred EEecCCc-cccccH------HHHhccCCCCCCEEEEECCH-HHHHHHHHHHHHcCC
Confidence 4432211 222211 111112222 3899999998 999999998876643
No 60
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.90 E-value=1.9e-23 Score=206.49 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=134.6
Q ss_pred CCHHHHHHhcC-C-----CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC
Q 014605 184 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 257 (421)
Q Consensus 184 ~p~~~ll~~lp-~-----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 257 (421)
.|+|++...++ . ...|+|||+|+|.. .+.++|+|++ ...|.+|+||+++++ ||.|.+.+|.+
T Consensus 83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f 150 (325)
T PTZ00274 83 KPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF 150 (325)
T ss_pred CCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence 47777653333 1 24699999999854 5789999954 578999999999999 99999999877
Q ss_pred CCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCC--C-CCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCC
Q 014605 258 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--G-PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG 332 (421)
Q Consensus 258 ~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~--~-~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~ 332 (421)
.|.++ +..++++|||+|||||||++|+++...+... . ...+++|+||+|+.+|++|++||+++++.++ ++
T Consensus 151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f----- 225 (325)
T PTZ00274 151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF----- 225 (325)
T ss_pred ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence 66554 4457999999999999999999988765321 0 1258999999999999999999999988656 58
Q ss_pred CcEEEEeccCCC------CcccchhhH-HHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHH
Q 014605 333 GGFYVAFSRKQP------QKVYVQHKM-LEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST 386 (421)
Q Consensus 333 ~~~~~a~Sr~~~------~k~yVqd~l-~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~ 386 (421)
+++.+.|++.. ..++|.+.+ .+.. .... .+..+|+|||+ .|+++|...
T Consensus 226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~----~~~~~~~~~vylCGPp-~Mm~av~~~ 281 (325)
T PTZ00274 226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRRTM----PAPEEKKKIIMLCGPD-QLLNHVAGT 281 (325)
T ss_pred -EEEEEeCCCCcccCCCCCCCccCHHHHHHhc----CCCccCCcEEEEeCCH-HHHHHhcCC
Confidence 88888886422 245665543 2210 0011 13579999998 999887544
No 61
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.89 E-value=5.7e-23 Score=196.61 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=132.4
Q ss_pred CCHHHHHHhcCCC---CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-C
Q 014605 184 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L 259 (421)
Q Consensus 184 ~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F 259 (421)
.|+|++...+|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++++ |+.|.+.+|.|. |
T Consensus 33 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~f 96 (250)
T PRK00054 33 KPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNGF 96 (250)
T ss_pred CCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCCC
Confidence 5888877777654 68999999998 4899999943 4889999999999 999999999986 8
Q ss_pred CCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 260 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 260 ~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
.++....++||||+||||||+++++++....+ .++.|+|++|+.+|++|++||+++.+ + ++.
T Consensus 97 ~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~----~--------~~~- 158 (250)
T PRK00054 97 DLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVGD----V--------YVT- 158 (250)
T ss_pred CCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcCC----E--------EEE-
Confidence 77655679999999999999999999987643 57999999999999999999998431 1 222
Q ss_pred ccCC--CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 340 SRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 340 Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++. +.++||++.+.+.. .+...||+|||+ .|++++.+.|.+.
T Consensus 159 ~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~~ 203 (250)
T PRK00054 159 TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKEK 203 (250)
T ss_pred ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence 2222 24678888765432 235689999998 9999999988774
No 62
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.89 E-value=8.1e-23 Score=190.64 Aligned_cols=185 Identities=19% Similarity=0.327 Sum_probs=151.6
Q ss_pred CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCCCc
Q 014605 197 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 276 (421)
Q Consensus 197 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GTG 276 (421)
.-|.||+||-|.+ .+.|.+-|++..-+-.....+.|.||+|+.+|++ ||.|.|++|.|.|...+.+.++|||++|.|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence 3589999999976 5888998888766555567889999999999999 999999999999888777899999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCC------cccch
Q 014605 277 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ 350 (421)
Q Consensus 277 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------k~yVq 350 (421)
.||+||-+-..+.+... ..++.+.||+|+..+.+|++|++++++++++| +.++|.|.+.++ .+++.
T Consensus 287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence 99999988877765432 38999999999999999999999999988999 999999997764 34444
Q ss_pred hhHHHcHHHHHHHh-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhC
Q 014605 351 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEG 395 (421)
Q Consensus 351 d~l~~~~~~v~~~l-~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~~ 395 (421)
..+-+. .+.++- .+++.+|+|||+ .|..+|.+.|.+...+..
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE~e 401 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVERE 401 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcccc
Confidence 444332 111111 127899999999 999999998888766543
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.88 E-value=9.3e-23 Score=198.44 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=131.1
Q ss_pred CCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceE-EEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 261 (421)
.|+||+...++.. .+|+|||+|.+.. .+.++|+|++ .|..|.+|+++++ |+.| .+.+|.|+|..
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~~ 94 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPSE 94 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCcc
Confidence 5899888877643 4589999998743 5789999843 3899999999999 9999 69999998765
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
.+..++++|||+|+||||+++++++...++ .+++++||+|+++|++|.+||+++... +++ .+.
T Consensus 95 ~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~-----------~~v-~~~ 157 (281)
T PRK06222 95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE-----------LYV-TTD 157 (281)
T ss_pred cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe-----------EEE-EcC
Confidence 533579999999999999999999876543 579999999999999999999987643 112 223
Q ss_pred CC--CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 342 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 342 ~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+. ..+++|++.+.+.... ..+...||+|||+ .|++++.+.+.+.
T Consensus 158 d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (281)
T PRK06222 158 DGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY 203 (281)
T ss_pred CCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence 22 2456777765443111 1114679999998 9999999887654
No 64
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.88 E-value=1.2e-22 Score=192.26 Aligned_cols=164 Identities=22% Similarity=0.276 Sum_probs=129.6
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCC-CCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 261 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 261 (421)
..|||++...+|....|+|||+|+| +.++|+|+ +.|.+|+||+++++ ||.|.+.+|.|. |.+
T Consensus 24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~-----------~~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~~ 86 (233)
T cd06220 24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVK-----------KVGEATSALHDLKE--GDKLGIRGPYGNGFEL 86 (233)
T ss_pred CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEE-----------ecChHHHHHHhcCC--CCEEEEECcCCCCccC
Confidence 4589988887777667999999997 78999984 23899999999999 999999999997 776
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
+ .+|+||||+|||||||++++++.... .+++|+||+|+++|++|.+||++. ..+ . +..+.
T Consensus 87 ~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~~~------~--~~~~~ 146 (233)
T cd06220 87 V--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----DEL------I--VTTDD 146 (233)
T ss_pred C--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----CcE------E--EEEeC
Confidence 5 57999999999999999999988754 479999999999999999999982 222 2 22221
Q ss_pred -CCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 342 -KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 342 -~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
....++++++.+.+.. ......+|+|||+ .|.+++.+.|.+.
T Consensus 147 ~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~ 189 (233)
T cd06220 147 GSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER 189 (233)
T ss_pred CCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 1123567777654432 1235689999998 9999999888764
No 65
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.88 E-value=1.5e-22 Score=193.46 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=130.1
Q ss_pred CCHHHHHHhcCC-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceE-EEEeecCCCCC
Q 014605 184 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 261 (421)
.|+||+...++. ...|+|||+|.|.. .+.++|+|+. .|..|.+|.++++ |+.+ .+.+|.|.|.+
T Consensus 28 ~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~--G~~v~~i~gP~G~~~~ 93 (248)
T cd06219 28 KPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEE--GDKIHDVVGPLGKPSE 93 (248)
T ss_pred CCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCC--CCEeeeeecCCCCCee
Confidence 588887776653 35699999998743 4789999842 3889999999999 9999 69999998765
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
.+...+++|||+||||||+++++++....+ .+++|+||+|+.+|++|.+||+++.++ . +++ ++
T Consensus 94 ~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~-~~~-~~ 156 (248)
T cd06219 94 IENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE----------L-IIT-TD 156 (248)
T ss_pred cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe----------E-EEE-eC
Confidence 544679999999999999999999976543 579999999999999999999998643 1 222 33
Q ss_pred CC--CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 342 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 342 ~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
+. ...+++++.+.+.... ......+|+|||+ .|++.+.+.|.+
T Consensus 157 ~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP~-~m~~~~~~~l~~ 201 (248)
T cd06219 157 DGSYGEKGFVTDPLKELIES----GEKVDLVIAIGPP-IMMKAVSELTRP 201 (248)
T ss_pred CCCCCccccchHHHHHHHhc----cCCccEEEEECCH-HHHHHHHHHHHH
Confidence 32 2356777655433211 1124689999998 999999988764
No 66
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.88 E-value=2.9e-22 Score=191.81 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=144.7
Q ss_pred CCCHHHHHHhcCCCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCC
Q 014605 183 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 262 (421)
Q Consensus 183 ~~p~~~ll~~lp~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp 262 (421)
..|+|++...+|....|+|||+|.+.. .+.++|.|++ ...|.+|.++..+++ ||.|.+.+|.|++.+.
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~---------~~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~ 103 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRV---------YEVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR 103 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEE---------EeCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence 469999999999999999999999864 5777777754 467999999999999 9999999999987665
Q ss_pred -CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec-
Q 014605 263 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS- 340 (421)
Q Consensus 263 -~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S- 340 (421)
+..+|+++||+|||+||+++++++....+. ..+++++||+|+++|+++.+|++++.+. +++.+.+
T Consensus 104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~~---~~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~ 170 (252)
T COG0543 104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKGD---ANKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD 170 (252)
T ss_pred cccCCcEEEEecccCHhHHHHHHHHHHhcCC---CceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence 677789999999999999999999988653 2789999999999999999999999864 2233333
Q ss_pred cCCCCcccc-hhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 014605 341 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 391 (421)
Q Consensus 341 r~~~~k~yV-qd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~ 391 (421)
...+.+++| ++.+.+.... +...+|+|||+ .|.+.+.+.+.+-.
T Consensus 171 ~~~G~~G~v~~~~~~~~~~~------~~~~v~~cGp~-~M~~~v~~~~~~~g 215 (252)
T COG0543 171 GWKGRKGFVTTDVLKELLDL------EVDDVYICGPP-AMVKAVREKLKEYG 215 (252)
T ss_pred CCCccCcceeHHHHhhhccc------cCCEEEEECCH-HHHHHHHHHHHhcC
Confidence 222357888 7777654211 46899999999 99999988777654
No 67
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.87 E-value=4e-22 Score=189.87 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=129.6
Q ss_pred CCHHHHHHhcC---CCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp---~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 260 (421)
.|+|++...+| ....|+|||+|.+.. .+.++|+|+. .|..|+||.++++ |+.|.+.+|.|.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~~ 91 (243)
T cd06192 26 RPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNGF 91 (243)
T ss_pred CCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCCC
Confidence 57888777764 456899999999853 4889999842 4889999999999 99999999999876
Q ss_pred CC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEe
Q 014605 261 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 339 (421)
Q Consensus 261 lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~ 339 (421)
+. +...+++|||+|||||||++++++..... .+++|+||+|+.+|.+|.+||+++. . .+. ..
T Consensus 92 ~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~~-~~ 154 (243)
T cd06192 92 EGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VEI-WT 154 (243)
T ss_pred ccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eEE-EE
Confidence 55 44679999999999999999999987642 6899999999999999999999872 1 222 22
Q ss_pred ccCCC--CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 014605 340 SRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 391 (421)
Q Consensus 340 Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~ 391 (421)
+++.. ..+++++... . .. ..++..+|+|||+ .|++++++.|.+..
T Consensus 155 ~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g 201 (243)
T cd06192 155 TDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL 201 (243)
T ss_pred ecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence 33322 3455554311 1 11 1235689999998 99999999988763
No 68
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.86 E-value=8.6e-22 Score=184.99 Aligned_cols=143 Identities=19% Similarity=0.314 Sum_probs=110.5
Q ss_pred CCceeeccCCCCC--CCeEEEEEEEEEecCCCCCccCCccchhhhccCCC---CCceEEEEeecCCCCCCC----CCCCe
Q 014605 198 TRAFSISSSPLAH--PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ---QGIYIPAWFQKGSLPRPP----PSVPL 268 (421)
Q Consensus 198 pR~YSIaSsp~~~--~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~---~G~~v~i~~~~g~F~lp~----~~~pi 268 (421)
.|+|||||+|..+ .+.++|+|+. .|.+|+||.++... .|+.|.+.+|.|.|.++. ...++
T Consensus 60 ~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~i 128 (220)
T cd06197 60 VRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKM 128 (220)
T ss_pred eeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceE
Confidence 4999999999654 2789999842 38999999864321 289999999999998862 35799
Q ss_pred EEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCCccc
Q 014605 269 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVY 348 (421)
Q Consensus 269 imIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~y 348 (421)
+|||+|||||||++++++....... ..+++|+||+|+.+|.+|.+||.++.+. . . .+.. ++
T Consensus 129 llIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~~~~~-~-~------~~~~-~~-------- 189 (220)
T cd06197 129 VWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMDTLVRFPGL-P-V------STTL-FI-------- 189 (220)
T ss_pred EEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHHHHHhccCC-c-e------EEEE-EE--------
Confidence 9999999999999999988764321 2689999999999999999999887532 1 1 1111 11
Q ss_pred chhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 349 VQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 349 Vqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
.+.||+|||+ .|+++|.+.+.+
T Consensus 190 ------------------~~~v~~CGP~-~m~~~~~~~~~~ 211 (220)
T cd06197 190 ------------------TSEVYLCGPP-ALEKAVLEWLEG 211 (220)
T ss_pred ------------------eccEEEECcH-HHHHHHHHHhhh
Confidence 1169999998 999988877664
No 69
>PLN02252 nitrate reductase [NADPH]
Probab=99.86 E-value=1.7e-21 Score=213.78 Aligned_cols=190 Identities=19% Similarity=0.152 Sum_probs=140.3
Q ss_pred CCHHHHHHhcC--C-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 260 (421)
.|+|++...++ . ...|+|||+|.+.. .+.++|+|+++....+.+....|.+|+||.+|++ |+.|.+.+|.|.|.
T Consensus 666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~ 742 (888)
T PLN02252 666 PVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE 742 (888)
T ss_pred CCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence 36676665543 2 24799999999854 5789999987622111122246999999999999 99999999998764
Q ss_pred C--------C-C--CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcC-CCcc
Q 014605 261 R--------P-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS 328 (421)
Q Consensus 261 l--------p-~--~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~-g~l~ 328 (421)
+ + . ..++++|||+|||||||++++++....... ..+++||||+|+.+|++|++||+++.+.+ ++|
T Consensus 743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~- 819 (888)
T PLN02252 743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL- 819 (888)
T ss_pred ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence 3 3 1 247999999999999999999998765321 26899999999999999999999998875 578
Q ss_pred ccCCCcEEEEeccCC-C----CcccchhhHH-HcHHHHHHHhcCCCEEEEeCCCCccHHH-HHHHHHH
Q 014605 329 EAKGGGFYVAFSRKQ-P----QKVYVQHKML-EQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE 389 (421)
Q Consensus 329 ~~~~~~~~~a~Sr~~-~----~k~yVqd~l~-~~~~~v~~~l~~~~~iyVCG~~~~m~~~-V~~~L~~ 389 (421)
+++.++|++. + .+++|++.+. +... ....+..+|+|||+ .|.+. +...|.+
T Consensus 820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~----~~~~~~~vyiCGPp-~Mi~~av~~~L~~ 877 (888)
T PLN02252 820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREHLP----EGGDETLALMCGPP-PMIEFACQPNLEK 877 (888)
T ss_pred -----EEEEEecCCCcCCCCCcCCcCCHHHHHHhcc----cCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence 8888888753 1 3567766443 2211 01235789999999 88874 6666654
No 70
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.85 E-value=5.9e-21 Score=182.88 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=137.3
Q ss_pred HHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCC-
Q 014605 187 DWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP- 262 (421)
Q Consensus 187 ~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp- 262 (421)
+++....|. ..-|+||..|++.. .+.++|.|++ ...|.+|.||.+|+. ||.|.+++|.|.|.++
T Consensus 86 ~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~~ 153 (286)
T KOG0534|consen 86 QHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYDP 153 (286)
T ss_pred eEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEecC
Confidence 344444443 35899999999865 6899999954 567999999999999 9999999999998887
Q ss_pred CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-CccccCCCcEEEEecc
Q 014605 263 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSR 341 (421)
Q Consensus 263 ~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l~~~~~~~~~~a~Sr 341 (421)
...+.+.|||+|||||||..++++....... ..+++|+|++++.+|.++++||+.++++++ .| ++..+.++
T Consensus 154 ~~~~~l~miAgGtGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~~ 225 (286)
T KOG0534|consen 154 QKAKHLGMIAGGTGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVDQ 225 (286)
T ss_pred CCcceEEEEecccchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEcC
Confidence 6678999999999999999999999876543 378999999999999999999999999877 78 88888888
Q ss_pred CCC----CcccchhhHHHcHHHHHHHhcC----CCEEEEeCCCCccHHH
Q 014605 342 KQP----QKVYVQHKMLEQSQRIWNLLLS----KASIYVAGSATKMPSD 382 (421)
Q Consensus 342 ~~~----~k~yVqd~l~~~~~~v~~~l~~----~~~iyVCG~~~~m~~~ 382 (421)
++. ..+||...+. .+.+.. ...++||||+ +|...
T Consensus 226 ~~~~w~~~~g~It~~~i------~~~l~~~~~~~~~~liCGPp-~m~~~ 267 (286)
T KOG0534|consen 226 PPEIWDGSVGFITKDLI------KEHLPPPKEGETLVLICGPP-PMING 267 (286)
T ss_pred CcccccCccCccCHHHH------HhhCCCCCCCCeEEEEECCH-HHHhH
Confidence 763 4677754332 222322 3789999999 88873
No 71
>PRK05802 hypothetical protein; Provisional
Probab=99.85 E-value=2.8e-21 Score=191.00 Aligned_cols=168 Identities=13% Similarity=0.084 Sum_probs=127.5
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC--C
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S 258 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g--~ 258 (421)
.|+||+...++. ...|+|||+|++.. .+.++|+|++ .|..|++|.++++ |+.|.+.+|.| .
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~ 161 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI 161 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence 589988777653 34599999999854 5889999943 5899999999999 99999999984 4
Q ss_pred CCCC----CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCc
Q 014605 259 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 334 (421)
Q Consensus 259 F~lp----~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~ 334 (421)
|.++ ...+++++||+|+||||+++++++...++ .+++|+||+|+++|++|.+||+++..+ . .
T Consensus 162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~---~------~ 227 (320)
T PRK05802 162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE---I------I 227 (320)
T ss_pred CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc---e------E
Confidence 7553 23468999999999999999999887654 479999999999999999999998654 1 1
Q ss_pred EEEEeccCCC----CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 335 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 335 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+. .+..+.. .+++|++.+.+. +...||+|||. .|.+.|.+.+.+.
T Consensus 228 ~~-~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~ 276 (320)
T PRK05802 228 EL-NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL 276 (320)
T ss_pred EE-EecccCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence 11 1112221 133444444321 23689999998 9999999988764
No 72
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.83 E-value=1.6e-20 Score=213.50 Aligned_cols=182 Identities=16% Similarity=0.193 Sum_probs=140.0
Q ss_pred CCCHHHHHHhcC--C-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC--
Q 014605 183 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-- 257 (421)
Q Consensus 183 ~~p~~~ll~~lp--~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-- 257 (421)
..|+||+...++ + ...|+|||+|.|. ..+.++|+|+ ...|.+|+||+++++ |+.|.+.+|.|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence 367888777664 2 2359999999995 3578999883 246999999999999 99999998654
Q ss_pred --------CCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCC-Cc
Q 014605 258 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF 327 (421)
Q Consensus 258 --------~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g-~l 327 (421)
.|.++ ...+|+||||+|||||||++|+++...+.......+++||||+|+.+|++|++||++|.+.++ +|
T Consensus 1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306 1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence 45555 556799999999999999999998876431011258999999999999999999999987655 58
Q ss_pred cccCCCcEEEEeccCCC----CcccchhhHHHcHHHHHHHhc---CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 328 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 328 ~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++.++|++++ ..++|++.+.+ +.+. .+..+|+|||+ .|++++.+.|++.
T Consensus 1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~------~~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQ------SALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred ------EEEEEECCCCcccCCCCCCCCHHHHH------HhcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 88999997543 34666654322 1221 35789999998 9999998887664
No 73
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.4e-20 Score=179.18 Aligned_cols=175 Identities=17% Similarity=0.210 Sum_probs=136.0
Q ss_pred CCHHHHHHhcCC----CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCceEEEEeecCC
Q 014605 184 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS 258 (421)
Q Consensus 184 ~p~~~ll~~lp~----~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~ 258 (421)
-++|+....++. ..|.+||||++... .++++.|+ .-|-.|.-|.+ +++ |+++.+.+|.|.
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK-----------~LGD~Tk~l~dnLk~--G~k~~vdGPYG~ 308 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIK-----------ALGDFTKTLKDNLKV--GTKLEVDGPYGK 308 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEeh-----------hhhhhhHHHHHhccC--CceEEEecCcce
Confidence 467766555554 35999999999753 47888883 45889999985 999 999999999999
Q ss_pred CCCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEE
Q 014605 259 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 338 (421)
Q Consensus 259 F~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a 338 (421)
|........-|.||+|+|||||+|+++....+... .++.|||.||+.++.+|.+||+++.+.++++ .+++.
T Consensus 309 F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lHii 379 (438)
T COG4097 309 FDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLHII 379 (438)
T ss_pred eecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEEEe
Confidence 98874333489999999999999999998885555 8999999999999999999999999865777 67764
Q ss_pred eccCCCCcccch-hhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 014605 339 FSRKQPQKVYVQ-HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 391 (421)
Q Consensus 339 ~Sr~~~~k~yVq-d~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~ 391 (421)
-|. ..+|+. +.+..+.+. .....||.|||. +|++.++..|++.-
T Consensus 380 DSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~~ 424 (438)
T COG4097 380 DSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQN 424 (438)
T ss_pred cCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHcC
Confidence 333 356663 333332111 113489999998 99999988887753
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.81 E-value=6.6e-20 Score=200.94 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=133.4
Q ss_pred CCHHHHHHhcCCC-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceE-EEEeecCCCCC
Q 014605 184 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 261 (421)
Q Consensus 184 ~p~~~ll~~lp~~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 261 (421)
.|+||+...++.. .+|+|||+|.+.. .+.++|+|++ .|..|.+|+++++ ||.| .+.+|.|+|..
T Consensus 29 ~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~-----------vG~~T~~L~~l~~--Gd~v~~v~GP~G~~~~ 94 (752)
T PRK12778 29 KPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQE-----------VGLSTTKLCELNE--GDYITDVVGPLGNPSE 94 (752)
T ss_pred CCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEE-----------cCchHHHHhcCCC--CCEeCeEeCCCCCCcc
Confidence 5899988877644 4589999998753 5789999954 3899999999999 9999 79999998876
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEecc
Q 014605 262 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 262 p~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr 341 (421)
....++++|||+|+||||+++++++....+ .++++|||+|+.+|++|.+||+++..+ + .++ +.
T Consensus 95 ~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~---~--------~~~-t~ 157 (752)
T PRK12778 95 IENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE---V--------IIM-TD 157 (752)
T ss_pred CCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe---E--------EEE-EC
Confidence 533479999999999999999999887653 579999999999999999999988643 2 122 23
Q ss_pred CC--CCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 342 KQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 342 ~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
+. ..+++|++.+.+.... ..+...||+|||+ .|++.+.+.+.+
T Consensus 158 dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~ 202 (752)
T PRK12778 158 DGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 32 2467888866543211 1123579999998 999999988765
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.79 E-value=3.1e-19 Score=169.29 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=111.8
Q ss_pred CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccC-CccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCCC
Q 014605 197 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 275 (421)
Q Consensus 197 ~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GT 275 (421)
..|.|||+|.+.. .++++|.|.+ ... |.+|+||.++++ ||.|.+.+|.|.|.++...++++|||+||
T Consensus 63 ~~R~YSi~~~~~~-~~~l~~~v~~---------~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~Gt 130 (235)
T cd06193 63 VMRTYTVRRFDPE-AGELDIDFVL---------HGDEGPASRWAASAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDET 130 (235)
T ss_pred cCcccceeEEcCC-CCEEEEEEEe---------CCCCCchHHHHhhCCC--CCEEEEECCCCCCCCCCCcceEEEEeccc
Confidence 4699999998743 5889999853 234 899999999999 99999999999998775567999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCCcccchhhHHH
Q 014605 276 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 355 (421)
Q Consensus 276 GIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 355 (421)
||||+++++++.... .+++++||+|+.+|.++.++ . .++ +++.+.+++.. .......+.
T Consensus 131 Gi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~------~-~~~------~~~~~~~~~~~-~~~~~~~~~- 189 (235)
T cd06193 131 ALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPA------P-AGV------EVTWLHRGGAE-AGELALLAV- 189 (235)
T ss_pred hHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCC------C-CCc------EEEEEeCCCCC-cchhHHHHH-
Confidence 999999999976532 57999999999966543322 1 345 55555444332 211111000
Q ss_pred cHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 356 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 356 ~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
.. .........+|+||++ .|++.+++.|.+
T Consensus 190 --~~-~~~~~~~~~vyicGp~-~mv~~v~~~l~~ 219 (235)
T cd06193 190 --RA-LAPPAGDGYVWIAGEA-GAVRALRRHLRE 219 (235)
T ss_pred --hc-ccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence 00 0011225789999998 999998877765
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.78 E-value=5.8e-19 Score=164.10 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=121.4
Q ss_pred CCCHHHHHHhcCCC----CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccC------CCCCceEEE
Q 014605 183 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPA 252 (421)
Q Consensus 183 ~~p~~~ll~~lp~~----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~i 252 (421)
..|+|++...+|.. ..|+|||+|++....+.++|+|+. ..|.+|.++..+. . |+.+.+
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v 92 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLV 92 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEE
Confidence 35899988888864 689999999985435889999943 2388888888776 6 999999
Q ss_pred EeecCCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCCCc-cccHHHHHHhhhcCCCccc
Q 014605 253 WFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSE 329 (421)
Q Consensus 253 ~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~d-~ly~del~~~~~~~g~l~~ 329 (421)
.+|.|.+..+ ....+++|||+||||||+++++++........ ...++.|+|++|+.+| ..|.+||.+..+. ....
T Consensus 93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~- 170 (210)
T cd06186 93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG- 170 (210)
T ss_pred ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc-
Confidence 9999988744 55679999999999999999999988764200 1278999999999997 5799999861111 1100
Q ss_pred cCCCcEEEEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 330 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 330 ~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
++.+.+++ +|+|||. .|.++++....+
T Consensus 171 ----~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~ 197 (210)
T cd06186 171 ----EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK 197 (210)
T ss_pred ----eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence 12222332 8999998 999999887766
No 77
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.76 E-value=1.3e-18 Score=144.61 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=81.3
Q ss_pred EEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCC-ccccCCCcEEEEeccCCC----
Q 014605 270 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP---- 344 (421)
Q Consensus 270 mIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~-l~~~~~~~~~~a~Sr~~~---- 344 (421)
|||+|||||||+++++++...... .+++||||+|+.+|++|++||+++.+.+++ + +++.+ ++.++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence 799999999999999999987544 899999999999999999999999977443 5 44444 44333
Q ss_pred CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHH
Q 014605 345 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 385 (421)
Q Consensus 345 ~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~ 385 (421)
.++||++.+.+.... ......++.||||||+ .|.++|++
T Consensus 71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~ 109 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK 109 (109)
T ss_dssp EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence 378999988654333 2222348999999998 99998864
No 78
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.76 E-value=3.9e-18 Score=189.47 Aligned_cols=181 Identities=11% Similarity=0.019 Sum_probs=130.7
Q ss_pred CCHHHHHHhcC-CCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEE-EEeecCCCC-
Q 014605 184 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP- 260 (421)
Q Consensus 184 ~p~~~ll~~lp-~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-i~~~~g~F~- 260 (421)
.||||+...++ +...|+|||+|.+.. .+.++|+|+. .|..|.+|.++++ |+.|. |.+|.|+|.
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~-----------vG~~T~~L~~lk~--Gd~l~~I~GPlG~~f~ 743 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQG-----------MGTSSLEINRMAI--GDAFSGIAGPLGRASE 743 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEe-----------eccHHHHHhcCCC--cCEEeeeecCCCCCcC
Confidence 58998877654 334599999998643 5789999843 3888999999999 99995 999999864
Q ss_pred CCC--CCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHH---HHHhhhcCCCccccCCCcE
Q 014605 261 RPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYREL---WLSHSLNDGVFSEAKGGGF 335 (421)
Q Consensus 261 lp~--~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~de---l~~~~~~~g~l~~~~~~~~ 335 (421)
++. ..++++|||+|+||||+++++++....+ .+++|+||+|+.+|++|.++ |++|.+.++..- ++
T Consensus 744 ~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~-----~v 813 (944)
T PRK12779 744 LHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL-----DV 813 (944)
T ss_pred CccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe-----EE
Confidence 432 3469999999999999999999887653 57999999999989888776 455655445321 44
Q ss_pred EEEeccCC--CCcccchhhHHHcHHHHHHHhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 336 YVAFSRKQ--PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 336 ~~a~Sr~~--~~k~yVqd~l~~~~~~v~~~l~-~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+++ +.+. +.+++|++.+.+........-. ....||+|||+ .|++.|.+.+.+.
T Consensus 814 ~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~~ 869 (944)
T PRK12779 814 IYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKPY 869 (944)
T ss_pred EEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 443 3332 2467888876543221100000 13679999998 9999999877654
No 79
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=186.63 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=128.9
Q ss_pred CCHHHHHHhcCC-CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhh-hccCCCCCceE-EEEeecCCCC
Q 014605 184 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~-~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~i~~~~g~F~ 260 (421)
.||||++..++. ...|+|||++.+.. .+.++|.|++ .|..|.|| .++++ ||.| .+.+|.|.|.
T Consensus 29 ~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~~ 94 (1006)
T PRK12775 29 EPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLPQ 94 (1006)
T ss_pred CCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCCC
Confidence 589998887753 34689999997643 5788888843 48999998 58999 9999 7999999765
Q ss_pred CCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEec
Q 014605 261 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 340 (421)
Q Consensus 261 lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~S 340 (421)
.....++++|||+|+||||+++++++....+ .+++++||+|++++++|.+||+++... ++++ +
T Consensus 95 ~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~-----------~~v~-t 157 (1006)
T PRK12775 95 HIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD-----------LIVC-T 157 (1006)
T ss_pred CCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc-----------EEEE-E
Confidence 4333468999999999999999999876654 579999999999999999999876532 2222 2
Q ss_pred cCCC--CcccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHH
Q 014605 341 RKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 389 (421)
Q Consensus 341 r~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~ 389 (421)
.+.. .+++|++.+.+.... .....+|+|||+ .|++.|.+.+++
T Consensus 158 ddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~ 202 (1006)
T PRK12775 158 DDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRP 202 (1006)
T ss_pred CCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 3322 467888776543111 124579999998 999999987764
No 80
>PLN02292 ferric-chelate reductase
Probab=99.54 E-value=3.7e-14 Score=151.87 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=122.3
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCc-----eEEEEe
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI-----YIPAWF 254 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~-----~v~i~~ 254 (421)
.|+|+....+|. .+.|+|||+|+|..+++.++++|+ ..|..|++|.+ ++. |+ .|.+.+
T Consensus 353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK-----------~~G~~T~~L~~~l~~--gd~i~~~~V~VeG 419 (702)
T PLN02292 353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIK-----------SQGKWSTKLYHMLSS--SDQIDRLAVSVEG 419 (702)
T ss_pred CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEE-----------cCCchhHHHHHhCCC--CCccccceEEEEC
Confidence 478877777775 368999999998545688999984 34778888875 576 77 457889
Q ss_pred ecCCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC--CCCCEEEEEcccCCCccccHHHHHH-------hhhcC
Q 014605 255 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-------HSLND 324 (421)
Q Consensus 255 ~~g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~del~~-------~~~~~ 324 (421)
|.|.+..+ ....+++|||+|+||||+++++++...+.... ...++.|+|++|+.+|..+.+++.. +.+.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~- 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF- 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-
Confidence 99987655 44579999999999999999999987753211 1258999999999999988765543 2233
Q ss_pred CCccccCCCcEEEEeccCCCCcc-cchhhHHHcHHHHHHHhc-----CCCEEEEeCCCCccH
Q 014605 325 GVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLLL-----SKASIYVAGSATKMP 380 (421)
Q Consensus 325 g~l~~~~~~~~~~a~Sr~~~~k~-yVqd~l~~~~~~v~~~l~-----~~~~iyVCG~~~~m~ 380 (421)
.++ ++.+.++|+.+.+. |-++ ..+.+.+.+. +...+.+|||++.+-
T Consensus 499 ~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w 550 (702)
T PLN02292 499 IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWLW 550 (702)
T ss_pred CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchHH
Confidence 355 78888888766321 1111 2222222221 367899999986554
No 81
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.54 E-value=2.9e-14 Score=153.17 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=124.8
Q ss_pred CCHHHHHHhcCCC---CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-----cCCCCC------ce
Q 014605 184 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-----LDPQQG------IY 249 (421)
Q Consensus 184 ~p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-----l~~~~G------~~ 249 (421)
.|||++...+|.. +.|+|||+|+|..+++.++++|++ . |-.|+.|.+ +.+ | ..
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~-gG~T~~L~~~i~~~l~~--g~~~~~~~~ 406 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------E-GGWTNSLYNKIQAELDS--ETNQMNCIP 406 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------C-CCchHHHHHHHHhhccC--CCCcccceE
Confidence 5888888777754 579999999876556788998843 2 444555532 223 4 37
Q ss_pred EEEEeecCCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC--CCCCEEEEEcccCCCccccHHHHHH-----hh
Q 014605 250 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-----HS 321 (421)
Q Consensus 250 v~i~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~del~~-----~~ 321 (421)
+.+.+|.|.|..+ ...++++|||+|+|||||++++++...+.... ...++.|+|++|+.+|..|.+++.. +.
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS 486 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence 8889999988766 44579999999999999999999998643211 1258999999999999999999863 22
Q ss_pred hcCCCccccCCCcEEEEeccCCCCcccchhhHHHc--HHHHHHHhcCCCEEEEeCCCCccH
Q 014605 322 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKMP 380 (421)
Q Consensus 322 ~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~--~~~v~~~l~~~~~iyVCG~~~~m~ 380 (421)
+. .++ ++....+|+......+++.+..- .+.++ +-.+...+.+||+.+.+-
T Consensus 487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~lw 539 (722)
T PLN02844 487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESFLW 539 (722)
T ss_pred Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCchHH
Confidence 22 345 78888999877555666666541 12222 112367899999975543
No 82
>PLN02631 ferric-chelate reductase
Probab=99.54 E-value=1.9e-14 Score=153.79 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=110.5
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cCCCCCc--eEEEEeecC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG 257 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~i~~~~g 257 (421)
.|||++...+|. .+.|+|||+|+|...++.++++|+ ..|..|++|.+ ++. .|+ .|.+.+|.|
T Consensus 336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG 403 (699)
T PLN02631 336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG 403 (699)
T ss_pred CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence 578888777775 367999999998655688999983 35888999975 432 144 677788999
Q ss_pred CCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC--CCCCEEEEEcccCCCccccHHHHHHh------hhcCCCcc
Q 014605 258 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS 328 (421)
Q Consensus 258 ~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~del~~~------~~~~g~l~ 328 (421)
.|..+ ....+++|||+|+||||+++++++...+.... +..++.|+||+|+.+|.+|.||++.+ .++ -++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni- 481 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL- 481 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence 87766 55678999999999999999999998654321 23589999999999999999999863 223 367
Q ss_pred ccCCCcEEEEeccCCC
Q 014605 329 EAKGGGFYVAFSRKQP 344 (421)
Q Consensus 329 ~~~~~~~~~a~Sr~~~ 344 (421)
++...+||+++
T Consensus 482 -----~i~iyVTR~~~ 492 (699)
T PLN02631 482 -----RIEAYITREDK 492 (699)
T ss_pred -----EEEEEEcCCCC
Confidence 88888999755
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.26 E-value=1.4e-12 Score=121.71 Aligned_cols=175 Identities=20% Similarity=0.255 Sum_probs=109.7
Q ss_pred CCHHHHHH--hcCCC---CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhh-ccCCCCCceEEEEeecC
Q 014605 184 MPIDWLVQ--LVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 257 (421)
Q Consensus 184 ~p~~~ll~--~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g 257 (421)
-|+|++-. ..|++ .-|.||.++......+.+.|.|+ +.-.|+.|+|++ +++. ||.|.++.|.|
T Consensus 182 ~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr---------~~A~G~VS~~~H~~~KV--GD~v~~S~PAG 250 (385)
T KOG3378|consen 182 HPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVR---------RVAGGVVSNFVHDNLKV--GDIVGVSPPAG 250 (385)
T ss_pred CCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEe---------ehhchhhHHHhhccccc--cceeeccCCCc
Confidence 36776443 23333 24666666665555688999984 456799999998 6999 99999999999
Q ss_pred CCCCC----CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcC-CCccccCC
Q 014605 258 SLPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKG 332 (421)
Q Consensus 258 ~F~lp----~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~-g~l~~~~~ 332 (421)
+|.+. +.+.|++++|+|+||+|++++++....-.. .| .+..-++++.... .++
T Consensus 251 ~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~------------~R-----P~~~~~~~~~~K~k~~~----- 308 (385)
T KOG3378|consen 251 NFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYS------------SR-----PFKQWLEQLKLKYKENL----- 308 (385)
T ss_pred cceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCC------------CC-----cHHHHHHHHHHHHHHHH-----
Confidence 99876 567999999999999999999998765221 12 1111122221110 011
Q ss_pred CcEEEEeccCCC--CcccchhhHHHc--HHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 014605 333 GGFYVAFSRKQP--QKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 393 (421)
Q Consensus 333 ~~~~~a~Sr~~~--~k~yVqd~l~~~--~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~ 393 (421)
++.-.||.+.. .+.-|...+... .+.+-++-...+.||.|||. ++++.|.+.|.+...+
T Consensus 309 -K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~~-~~M~~~~~~L~~L~~~ 371 (385)
T KOG3378|consen 309 -KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGPN-NYMRFVKQELVKLGVE 371 (385)
T ss_pred -HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCcH-HHHHHHHHHHHHhcCC
Confidence 11111232221 122333333221 23333333348999999998 8889999988887543
No 84
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.68 E-value=4.9e-08 Score=86.21 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=49.5
Q ss_pred CeEEEeCCCcchhHHHHHHHHHHhcCCC--CCCCEEEEEcccCCCcc-ccHHHHHHhhhcC--CCccccCCCcEEEEecc
Q 014605 267 PLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFSR 341 (421)
Q Consensus 267 piimIa~GTGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~-ly~del~~~~~~~--g~l~~~~~~~~~~a~Sr 341 (421)
.++|||||+||+|+++++++.......+ ...++.|+|-+|+.+++ .|.++|.++.... ..+ ++.+.+++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT~ 76 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVTR 76 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEETT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEcC
Confidence 5899999999999999999998765411 45789999999999954 5776666554321 356 67777776
Q ss_pred CCC
Q 014605 342 KQP 344 (421)
Q Consensus 342 ~~~ 344 (421)
+..
T Consensus 77 ~~~ 79 (156)
T PF08030_consen 77 ESS 79 (156)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 85
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.39 E-value=5.5e-08 Score=79.35 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=54.5
Q ss_pred CCHHHHHHhcCC---CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCC
Q 014605 184 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 260 (421)
Q Consensus 184 ~p~~~ll~~lp~---~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 260 (421)
.|+|++...++. ...|+|||+|.+. .++.++|+|+. .+.|..|+||+++++ ||.|.+++|.|+|.
T Consensus 31 ~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 31 KPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNFT 98 (99)
T ss_dssp TTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSEE
T ss_pred CcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEcccccC
Confidence 578888888772 2469999999995 36799999954 478999999999999 99999999999985
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.37 E-value=7.1e-07 Score=98.56 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=75.2
Q ss_pred CCHHHHHHhcCC-----C-CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecC
Q 014605 184 MPIDWLVQLVPP-----L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 257 (421)
Q Consensus 184 ~p~~~ll~~lp~-----~-~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 257 (421)
-||||+....+. + .||++||++.... .+.++|+|.+| |..|.+|+++++ ||.|.+.+|.|
T Consensus 820 kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~--Gd~v~v~GPLG 885 (1028)
T PRK06567 820 KFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSE--NEKVVLMGPTG 885 (1028)
T ss_pred CCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCC--CCEEEEEcccC
Confidence 499988877632 2 6779999998643 57899999766 899999999999 99999999998
Q ss_pred -CCCCCCCCCCeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEc
Q 014605 258 -SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFG 304 (421)
Q Consensus 258 -~F~lp~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G 304 (421)
.|..+. .+.+++||+|+|+|| +.++....+ .++..|.+
T Consensus 886 ~pF~i~~-~k~vLLVgGGVGiAp---Lak~Lk~~G-----~~V~~~~~ 924 (1028)
T PRK06567 886 SPLEIPQ-NKKIVIVDFEVGNIG---LLKVLKENN-----NEVIFVTY 924 (1028)
T ss_pred CCCCCCC-CCeEEEEEccccHHH---HHHHHHHCC-----CeEEEEEc
Confidence 477653 357999999999997 445444332 34555554
No 87
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=5.2e-06 Score=89.68 Aligned_cols=124 Identities=20% Similarity=0.333 Sum_probs=86.2
Q ss_pred CHHHHHHhcCCC---CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc-cC----C--CC----CceE
Q 014605 185 PIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LD----P--QQ----GIYI 250 (421)
Q Consensus 185 p~~~ll~~lp~~---~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----~--~~----G~~v 250 (421)
|+|++...+|.+ +--+|||+|+| .++.+.+.|+.. |-.|+-|.+ +. + .+ .-.+
T Consensus 384 ~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i 450 (646)
T KOG0039|consen 384 PGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPKI 450 (646)
T ss_pred CCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCceE
Confidence 688877777754 78999999999 468999999543 555555532 11 1 01 3468
Q ss_pred EEEeecCCCCCC-CCCCCeEEEeCCCcchhHHHHHHHHHHhcCCC-------------CCCCEEEEEcccCCCcc-ccHH
Q 014605 251 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDF-LYRE 315 (421)
Q Consensus 251 ~i~~~~g~F~lp-~~~~piimIa~GTGIAPf~s~l~~~~~~~~~~-------------~~~~~~L~~G~R~~~d~-ly~d 315 (421)
.|.+|.|.=.-+ ..-..++|||+|.|++||.+.+++.......+ ..+++..++-||...++ .+.+
T Consensus 451 ~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~ 530 (646)
T KOG0039|consen 451 LIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKG 530 (646)
T ss_pred EEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHH
Confidence 888898853333 34456799999999999999999998754321 23667777778887755 4566
Q ss_pred HHHHhh
Q 014605 316 LWLSHS 321 (421)
Q Consensus 316 el~~~~ 321 (421)
.+.+..
T Consensus 531 ~l~~v~ 536 (646)
T KOG0039|consen 531 LLTEVE 536 (646)
T ss_pred HHHHHH
Confidence 665554
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.0016 Score=62.38 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=105.6
Q ss_pred CCCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCCCCCCCCCCeEEEeCC
Q 014605 195 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPG 274 (421)
Q Consensus 195 ~~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~G 274 (421)
...+|.|||.+-... .+++.|-|-+ ....|.+|.|-.+.++ ||+|.+.+|.|.+..+....-++|||=-
T Consensus 84 r~~~R~YTiR~~d~~-~~e~~vDfVl--------H~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDe 152 (265)
T COG2375 84 RPPQRTYTIRAVDAA-AGELDVDFVL--------HGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDE 152 (265)
T ss_pred CCCcccceeeeeccc-ccEEEEEEEE--------cCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEeccc
Confidence 346899999865321 3555554422 2378999999999999 9999999999997766656689999999
Q ss_pred CcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCCcccchhhHH
Q 014605 275 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML 354 (421)
Q Consensus 275 TGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~ 354 (421)
|++-.+.++|++.-.. .+...|.-.++..|. +++.. . +.+ .+.... |++.. + ...+.
T Consensus 153 tAlPAIa~iLE~lp~~------~~~~a~lev~d~ad~---~~l~~---~-~~l------~~~Wl~-r~~~~--~-~~ll~ 209 (265)
T COG2375 153 TALPAIARILETLPAD------TPAEAFLEVDDAADR---DELPS---P-DDL------ELEWLA-RDDAP--T-EQLLA 209 (265)
T ss_pred cchHHHHHHHHhCCCC------CceEEEEEeCChHHh---hccCC---C-Cce------eEEEec-CCCcc--c-hHHHH
Confidence 9998888888876543 345677777777664 22222 2 344 444433 43321 1 22222
Q ss_pred HcHHHHHHHhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHH
Q 014605 355 EQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 401 (421)
Q Consensus 355 ~~~~~v~~~l~~-~~~iyVCG~~~~m~~~V~~~L~~i~~~~~~~~~~~ 401 (421)
+...+. .+.. +.+++|.|-. .+++.+ ++.+.++.|++...
T Consensus 210 ~a~~~~--~~P~~~~~vwiagE~-~~v~~~----Rk~L~~e~g~dk~~ 250 (265)
T COG2375 210 AALAQA--ALPAGDYYVWIAGEA-SAVKAI----RKFLRNERGFDKSR 250 (265)
T ss_pred HHHhcc--cCCCCceEEEEeccH-HHHHHH----HHHHhhhcCCCHHH
Confidence 221110 1122 4799999997 666554 55555666776554
No 89
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=94.00 E-value=0.067 Score=51.73 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=37.7
Q ss_pred EEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 014605 27 MIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 27 v~~~~~lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~v~p~N 68 (421)
++.|+++|++++.++|++++|+.++ ....|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 5689999999999999999999985 67899999999998764
No 90
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=92.54 E-value=0.085 Score=44.46 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhccCCCCCceEEEEeecCCC
Q 014605 196 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 259 (421)
Q Consensus 196 ~~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 259 (421)
...|.|||.+.... .+++.|-|.+ ....|.+|.|..+.++ ||.|.+.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~--------Hg~~Gpas~WA~~A~p--Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVL--------HGDEGPASRWARSARP--GDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEE--------CCCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence 35799999887532 3566665532 1233999999999999 9999999999887
No 91
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=88.74 E-value=0.069 Score=43.98 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCHHHHHHhcCCC-----CCCceeeccCCCCCCCeEEEEEEEEEecCCCCCccCCccchhhhc
Q 014605 184 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG 241 (421)
Q Consensus 184 ~p~~~ll~~lp~~-----~pR~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~ 241 (421)
-|||++...+|.+ +..+|||+|+|. ++.+.|.|+ ..|-.|.-|.+
T Consensus 31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik-----------~~g~~T~~L~~ 80 (105)
T PF08022_consen 31 KPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIK-----------ARGGWTKRLYE 80 (105)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEE-----------eCCCchHHHHH
Confidence 5899998888865 456999999986 588999883 23556666654
No 92
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=77.22 E-value=4.7 Score=39.69 Aligned_cols=45 Identities=9% Similarity=0.256 Sum_probs=38.4
Q ss_pred cee-eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 23 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 23 ~~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
.|. +|++.+.++.+.+..+|++|+|+.+ ..+.|+||.++.|.++.
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 69 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCCC
Confidence 355 9999999997777789999999986 67899999999998763
No 93
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=69.89 E-value=10 Score=36.79 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=36.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~ 67 (421)
+|++++.+|+++...++++++|+.+ ..+.|+||.++.|.++
T Consensus 12 ~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~ 52 (286)
T cd06208 12 KVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPP 52 (286)
T ss_pred EEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECC
Confidence 8999999998777789999999974 6789999999999865
No 94
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=66.44 E-value=13 Score=35.22 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.0
Q ss_pred EEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 27 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 27 v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
+....++++.....++++|+|+.++....|+||.++.|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 3 LQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 345555554433358999999987557899999999998765
No 95
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=64.70 E-value=19 Score=28.50 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=28.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC--CCcccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~--~~~~y~~GD~l~v~p~ 67 (421)
+|++.+.++ .++++++|.+++ ....|+||.++.|.-.
T Consensus 3 ~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 688888888 478899999883 2478999999998766
No 96
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.53 E-value=19 Score=33.26 Aligned_cols=116 Identities=8% Similarity=0.036 Sum_probs=67.5
Q ss_pred CCCEEEEEcccCCC-ccccHHHHHHhhhcCCCccccCCCcEEEEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeC
Q 014605 296 AAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAG 374 (421)
Q Consensus 296 ~~~~~L~~G~R~~~-d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG 374 (421)
.++.+|+.+||--. .|++..-|..+.+. +-+ ..|+||++.=++... .+++.+-.+.-.-.+|-.+|+=|
T Consensus 18 qgkltLl~d~~eT~gsFl~H~~l~~~Lka--n~~-----~cFlaf~k~fshy~i---~~rKlG~~l~t~k~rgqlvF~dg 87 (248)
T KOG4723|consen 18 QGKLTLLLDTRETPGSFLFHYYLYHALKA--NES-----TCFLAFSKTFSHYAI---SMRKLGMDLKTKKNRGQLVFIDG 87 (248)
T ss_pred CccEEEEeecccCCceeeHHHHHHHHHhc--CCc-----EEEEEeecchhHHHH---HHHHhCCceeecccCCcEEEEhh
Confidence 38999999998776 99999999888876 343 799999987542111 11221111110111255677766
Q ss_pred CCCccHHHHHHHHHHH------HHHhCCCCHHHHHHHHHHHHHCCCEEEeecC
Q 014605 375 SATKMPSDVWSTFEEI------VSKEGEASRDSAANWLKALQRAGRYHVEAWS 421 (421)
Q Consensus 375 ~~~~m~~~V~~~L~~i------~~~~~~~~~~~a~~~l~~l~~~~Ry~~dvWs 421 (421)
=...+...+.++-++. +...++-...-.+++..+.++.-+..+|+|+
T Consensus 88 l~~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~ 140 (248)
T KOG4723|consen 88 LSMLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDI 140 (248)
T ss_pred hhhhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeec
Confidence 5322221222222221 2222232344456677778888899999996
No 97
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=48.11 E-value=50 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCEEE
Q 014605 392 SKEGEASRDSAANWLKALQRAGRYHV 417 (421)
Q Consensus 392 ~~~~~~~~~~a~~~l~~l~~~~Ry~~ 417 (421)
++..+++...|..||..|+++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 45568999999999999999998764
No 98
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=46.16 E-value=98 Score=27.00 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=60.5
Q ss_pred eEEEeCCCcchhHHHHHHHHHHhcCCC-CCCCEEEEEcccCCC--------ccccHHHHHHhhhcCC-CccccCCC----
Q 014605 268 LILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED--------DFLYRELWLSHSLNDG-VFSEAKGG---- 333 (421)
Q Consensus 268 iimIa~GTGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~--------d~ly~del~~~~~~~g-~l~~~~~~---- 333 (421)
++|+-.|+-.-||...+.......-.+ -..++.+=||.-... .|.+..+++++..... .++||+-+
T Consensus 1 mifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kpvagl~v~~F~~~~kiQsli~darIVISHaG~GSIL~ 80 (161)
T COG5017 1 MIFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIKPVAGLRVYGFDKEEKIQSLIHDARIVISHAGEGSILL 80 (161)
T ss_pred CeEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCcccccccEEEeechHHHHHHHhhcceEEEeccCcchHHH
Confidence 478888988888877765422110000 013555666653321 4667788888765411 33444322
Q ss_pred -----cEEEEeccCCCCcccchhhHHHcHHHHHHHhcCCCEEEEeCCC
Q 014605 334 -----GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSA 376 (421)
Q Consensus 334 -----~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~ 376 (421)
+=...++|+ ++| |+.+.++.-++..-+.+..++.+|-|.
T Consensus 81 ~~rl~kplIv~pr~---s~y-~elvDdHQvela~klae~~~vv~~spt 124 (161)
T COG5017 81 LLRLDKPLIVVPRS---SQY-QELVDDHQVELALKLAEINYVVACSPT 124 (161)
T ss_pred HhhcCCcEEEEECc---hhH-HHhhhhHHHHHHHHHHhcCceEEEcCC
Confidence 222334443 334 677777777777667778889999986
No 99
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=46.05 E-value=36 Score=31.18 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=30.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 69 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~ 69 (421)
+|++.+.++ .++++++|+.+ ....|+||.++.|.-.++
T Consensus 4 ~v~~~~~~~-----~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 4 TLLSIEPVT-----HDVKRLRFDKP-EGYDFTPGQATEVAIDKP 41 (218)
T ss_pred EEEEEEEcC-----CCeEEEEEcCC-CcCCCCCCCEEEEEeeCC
Confidence 678888877 47889999976 468999999999975543
No 100
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=42.05 E-value=44 Score=30.88 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=30.1
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~v~p~N 68 (421)
+|++++.++ .+++.++|+.++.. ..|+||.++.|..++
T Consensus 5 ~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 5 RVTEIIQET-----PTVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred EEEEEEecC-----CCeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 678888876 47889999987332 789999999998653
No 101
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=40.89 E-value=57 Score=30.18 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=30.2
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~v~p~N 68 (421)
+|++++.+++ ++.++.|+++. ....|+||.++.|..++
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 4 TVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred EEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 6888888874 68899998763 35789999999998654
No 102
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=40.22 E-value=62 Score=30.24 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.9
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCC-C-cccCCCCEEEEccCCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQD 69 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~-~-~~y~~GD~l~v~p~N~ 69 (421)
+|+++..++ .++.+++|+.++. . ..|+||+++.|...++
T Consensus 10 ~v~~~~~~s-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 10 VVARKVAES-----EDITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEcC-----CCeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 788888887 4789999998743 2 6899999999986553
No 103
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=39.08 E-value=34 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 014605 374 GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 414 (421)
Q Consensus 374 G~~~~m~~~V~~~L~~i~~~~~~~~~~~a~~~l~~l~~~~R 414 (421)
|.. .+...=.+-|.+-+.+.|.++.++|.+|+..|.++.+
T Consensus 17 G~~-a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 17 GLA-AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred cHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 544 5555555556666778899999999999999988765
No 104
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=38.02 E-value=22 Score=27.10 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.1
Q ss_pred cccCCCCEEEEccCCCH
Q 014605 54 IEYEVGDVLEILPSQDP 70 (421)
Q Consensus 54 ~~y~~GD~l~v~p~N~~ 70 (421)
-.|++||.+.|..+|+.
T Consensus 4 ~~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPH 20 (75)
T ss_pred cccCCCCEEEEEEcCCC
Confidence 36999999999999984
No 105
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=37.26 E-value=55 Score=27.26 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=55.3
Q ss_pred CeEEEeCCCcchhHHHHHHHHHHhcCCCCCCCEEEEEcccCCCccccHHHHHHhhhcCCCccccCCCcEEEEeccCC-CC
Q 014605 267 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ-PQ 345 (421)
Q Consensus 267 piimIa~GTGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~del~~~~~~~g~l~~~~~~~~~~a~Sr~~-~~ 345 (421)
.++|+|=-|++-.+.+++++.-.. .+...|+-..+..|..+ |.. . ..+ ++......+. ..
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~------~~~~v~iev~~~~d~~~---l~~---~-~~~------~v~wv~r~~~~~~ 63 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPAD------APGTVFIEVPDEADRQP---LPA---P-AGV------EVTWVPRDGPAAQ 63 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT-------EEEEEEEESSGGG--------------TEE------EEEEEE-SS--TT
T ss_pred eEEEEeccccHHHHHHHHHhCCCC------CeEEEEEEECChHhccc---CCC---C-CCC------EEEEEeCCCCCch
Confidence 478999999999999999887422 56778888877776332 222 1 334 4544443332 11
Q ss_pred cccchhhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 346 KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 346 k~yVqd~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
..-+.+.++... +-..+.+++++|-. .+.+.+++.|++-
T Consensus 64 ~~~l~~al~~~~-----~~~~~~~vW~AgE~-~~~r~lR~~l~~~ 102 (119)
T PF04954_consen 64 GSALADALRDLP-----LPAGDGYVWVAGEA-SAVRALRRHLREE 102 (119)
T ss_dssp -HHHHHHHTTS--------SS-EEEEEEEEH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----ccCCCeEEEEEecH-HHHHHHHHHHHHh
Confidence 112222222211 01237899999997 8888888777743
No 106
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=36.62 E-value=19 Score=35.29 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=36.7
Q ss_pred cCCCCEEEEccCCCHHHHHHHHHHcCCCCCceEEEeeCCc---cCCCCCccCCCCCccccHHHHHHhcccccC
Q 014605 56 YEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEM---KNYLPDIHKNTTEVPIKLRTFVELTMDVTS 125 (421)
Q Consensus 56 y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~ 125 (421)
|+|||++-..+.|...--. .--.++++.|.+....+ ..++ --.|||.+.+|++|+||+.
T Consensus 99 fk~Gd~VIp~~a~lGtW~t----~~v~~e~~Li~vd~~~pl~~AAT~-------~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRT----EAVFSESDLIKVDKDIPLASAATL-------SVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred cCCCCeEeecCCCCcccee----eEeecccceEEcCCcCChhhhhee-------ccCchHHHHHHHHHHhcCC
Confidence 9999999999999642211 11123345554432111 1111 1368999999999999986
No 107
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=34.56 E-value=89 Score=28.74 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=30.7
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~v~p~N 68 (421)
+|++.+.++ .++..|+|+.++ ....|+||.++.|..+.
T Consensus 5 ~V~~~~~~t-----~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 5 TVTEVERLS-----DSTIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred EEEEEEEcC-----CCeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 788888887 478899999874 35789999999997654
No 108
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=34.41 E-value=72 Score=29.30 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=29.1
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~v~p~ 67 (421)
+|++++.++ .++++++|+.+... ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQET-----PDVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcC-----CCeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 577788777 47889999987332 78999999999744
No 109
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=33.52 E-value=81 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=29.7
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
+|++++.+| .+++.++|..+ ....|+||.++.|..+.
T Consensus 4 ~v~~~~~~t-----~~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 4 TIVAQERLT-----HDIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred EEEEEeecC-----CCEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 677888887 47889999875 45789999999998654
No 110
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=33.26 E-value=53 Score=30.96 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=28.4
Q ss_pred EEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 27 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 27 v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
|++.+.++ .++++|+|+.++....|+||+++.|..+.
T Consensus 1 V~~~~~~t-----~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 1 VLSNREIA-----DDIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred CcceeEec-----CCeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 34555665 58899999987435789999999998765
No 111
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=31.89 E-value=1.1e+02 Score=28.36 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=31.6
Q ss_pred ee-eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccCC
Q 014605 24 FL-KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 68 (421)
Q Consensus 24 ~~-~v~~~~~lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~v~p~N 68 (421)
|. +|++.+.+| .+++.++|+.+... ..|+||.++.|..++
T Consensus 7 ~~~~v~~~~~~t-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 7 FEGTVVEIEDLT-----PTIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EeEEEEEEEecC-----CCEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 45 888888888 47889999987332 589999999998654
No 112
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=31.67 E-value=90 Score=28.91 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=29.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC---cccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAA---IEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~---~~y~~GD~l~v~p~ 67 (421)
+|++.+.++ .+++.++|..+... ..|+||.++.|.++
T Consensus 5 ~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 5 TVAEVVRET-----ADAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred EEEEEEecC-----CCeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 788888876 47888999987322 58999999999976
No 113
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=31.40 E-value=95 Score=28.82 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=42.0
Q ss_pred cccCCcCcceeeEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCCHHHHHHHHHHcC
Q 014605 15 SNYNNKAVCFLKMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 81 (421)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~ 81 (421)
-||-+....|++|++-+.++...+.+++.-.|.-.. |++|| .--+|-|..+.-+.+-+...
T Consensus 125 vnY~~~~~~yTRI~E~Khf~~~~~~~T~i~~EyP~~-----~~~g~-epYYPi~~~~n~~ly~kY~~ 185 (204)
T PF03275_consen 125 VNYPDDDVPYTRITEYKHFTGQKSPKTTITKEYPRE-----YDPGD-EPYYPIPTEENQALYQKYKE 185 (204)
T ss_dssp EEESSTTSSSSEEEEGGGGSTTSSSCEEEEEEEEEE-----ESTTS----EE--SHHHHHHHHHHHH
T ss_pred EECCCCCCCceEeeeeeccCCCCCCCeEEEEecCcc-----CCCCC-cccCCCCCHHHHHHHHHHHH
Confidence 345555556889999999999888888887777654 78998 78899999887666555433
No 114
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=31.33 E-value=79 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=27.6
Q ss_pred EEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 27 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 27 v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
|++.+.++ .++++++|..++ ...|+||.++.|..++
T Consensus 1 v~~~~~~~-----~~~~~~~l~~~~-~~~~~pGq~i~l~~~~ 36 (224)
T cd06187 1 VVSVERLT-----HDIAVVRLQLDQ-PLPFWAGQYVNVTVPG 36 (224)
T ss_pred CeeeeecC-----CCEEEEEEEeCC-CCCcCCCceEEEEcCC
Confidence 34555555 478999999873 4889999999998654
No 115
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=31.30 E-value=64 Score=29.76 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.8
Q ss_pred CcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 014605 40 KDVHHFEFEFVSAAIEYEVGDVLEILPSQD 69 (421)
Q Consensus 40 ~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~ 69 (421)
.++.+++|+.+ ....|+||.++.|..++.
T Consensus 9 ~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~ 37 (232)
T cd06190 9 HDVAEFRFALD-GPADFLPGQYALLALPGV 37 (232)
T ss_pred CCEEEEEEEcC-CccccCCCCEEEEECCCC
Confidence 48899999976 456899999999987653
No 116
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=30.80 E-value=1.3e+02 Score=21.91 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=32.9
Q ss_pred EEeCCCCccHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Q 014605 371 YVAGSATKMPSDVWSTFEEIVSKEG-----EASRDSAANWLKALQRA 412 (421)
Q Consensus 371 yVCG~~~~m~~~V~~~L~~i~~~~~-----~~~~~~a~~~l~~l~~~ 412 (421)
++.|+. +|...-..-|+....+.+ ++++.+|.+.|..|+..
T Consensus 9 w~tGDe-PmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~~ 54 (57)
T PF11272_consen 9 WVTGDE-PMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQAQ 54 (57)
T ss_pred ccCCCC-CCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 688998 998888877777765543 47999999999999863
No 117
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=30.56 E-value=95 Score=28.50 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=29.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
+|++.+.+| .++++++|..++ ...|+||.++.|..++
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 466666666 478999999763 7899999999999754
No 118
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.41 E-value=1.5e+02 Score=28.02 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=36.8
Q ss_pred EEEEeccCCC-----CcccchhhHHHcHHHHHH-HhcCCCEEEEeCCCCccHHHHHHHHHHHHHHh
Q 014605 335 FYVAFSRKQP-----QKVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 394 (421)
Q Consensus 335 ~~~a~Sr~~~-----~k~yVqd~l~~~~~~v~~-~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~ 394 (421)
-+.|||.+.- +-.++-+++.+..+...+ +...+..|-++|+...+++++.+.+.++-...
T Consensus 52 TvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 52 TAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred EEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 3567776543 223334444443333232 33348889999998888888888888876543
No 119
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=29.78 E-value=1e+02 Score=30.40 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=30.7
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecC-CCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~-~~~~y~~GD~l~v~p~N 68 (421)
+|++.+.++ .++++++|+.++ ....|+||.++.|..++
T Consensus 106 ~V~~~~~~~-----~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 106 RVASLERVA-----GDVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEcCC-----CcEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 778888776 478899999873 35789999999998765
No 120
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=29.09 E-value=1.1e+02 Score=28.92 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=31.0
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 69 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N~ 69 (421)
+|++.+.+| .++..++|+.+ ....|+||.++.|..++.
T Consensus 8 ~V~~~~~~t-----~d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 8 KIVENKEIA-----PNIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred EEEEEEEec-----CCeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 788888888 47889999854 567899999999986554
No 121
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=28.91 E-value=97 Score=28.55 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=28.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCC-cccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~-~~y~~GD~l~v~p~N 68 (421)
+|++.+.++ .++++++|+.++.. ..|+||.++.|...+
T Consensus 2 ~v~~i~~~t-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 40 (231)
T cd06191 2 RVAEVRSET-----PDAVTIVFAVPGPLQYGFRPGQHVTLKLDF 40 (231)
T ss_pred EEEEEEecC-----CCcEEEEEeCCCCCCCCCCCCCeEEEEEec
Confidence 466677766 47889999987433 589999999997543
No 122
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=28.09 E-value=1e+02 Score=26.30 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=23.0
Q ss_pred hhHHHcHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 014605 351 HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 390 (421)
Q Consensus 351 d~l~~~~~~v~~~l~~~~~iyVCG~~~~m~~~V~~~L~~i 390 (421)
+.|.+..+.+.+.+.+++.+|+||.. .-.....+...+.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G-~S~~~a~~~~~~~ 57 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNG-HSAAIASHFAADL 57 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEEST-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCc-hhhhHHHHHHHHH
Confidence 34555566677778889999999997 4433333333333
No 123
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=27.19 E-value=2.3e+02 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=22.9
Q ss_pred ccccHHHHHHh-cccccCCCCcHHHHHHHHH
Q 014605 109 VPIKLRTFVEL-TMDVTSASPRRYFFEVMSY 138 (421)
Q Consensus 109 ~~~tl~~~l~~-~~Dl~~~~p~~~~l~~la~ 138 (421)
.+++=.++|++ ||||++.+|+..-++.+..
T Consensus 20 ~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~ 50 (208)
T PF07583_consen 20 PPADDATFLRRVYLDLTGLPPTPEEVRAFLA 50 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 45677888887 9999998898876655433
No 124
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=26.23 E-value=1.3e+02 Score=27.52 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=29.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCC--CcccCCCCEEEEccCCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSA--AIEYEVGDVLEILPSQD 69 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~--~~~y~~GD~l~v~p~N~ 69 (421)
+|++.+.++ .++..++|+.++. ...|+||.++.|..+.+
T Consensus 2 ~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 42 (234)
T cd06183 2 KLVSKEDIS-----HDTRIFRFELPSPDQVLGLPVGQHVELKAPDD 42 (234)
T ss_pred EeEEeEecC-----CCEEEEEEECCCCCCcCCCCcccEEEEEecCC
Confidence 466777776 4677888987742 47899999999986654
No 125
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=25.95 E-value=1.2e+02 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=33.9
Q ss_pred CcCccee--eEEEeeeecCCCCCCcEEEEEEEecC--CCcccCCCCEEEEccCC
Q 014605 19 NKAVCFL--KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 19 ~~~~~~~--~v~~~~~lt~~~~~~~v~~i~l~~~~--~~~~y~~GD~l~v~p~N 68 (421)
+++..|. +|++++.+++ +++.++|++++ ....|+||.++.|..++
T Consensus 28 ~~~~~~~~~~v~~~~~~s~-----d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~ 76 (300)
T PTZ00319 28 LDPDMFQHFKLIKKTEVTH-----DTFIFRFALHSPTQRLGLPIGQHIVFRCDC 76 (300)
T ss_pred cCcCceEEEEEEEEEEcCC-----CceEEEEECCCCcccCCCccceEEEEEEEe
Confidence 4566666 8889988883 67788888752 23679999999998654
No 126
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=25.74 E-value=1.2e+02 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.9
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
+|++.+.++ .+++.++|+.++....|+||.++.|...+
T Consensus 2 ~v~~~~~~t-----~d~~~~~l~~~~~~~~~~pGQf~~l~~~~ 39 (248)
T cd06219 2 KILEKEELA-----PNVKLFEIEAPLIAKKAKPGQFVIVRADE 39 (248)
T ss_pred EEEEEEEeC-----CCeEEEEEEChhhhccCCCCcEEEEEcCC
Confidence 466777777 47888999876434689999999998654
No 127
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=25.72 E-value=1e+02 Score=26.55 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=28.6
Q ss_pred CceEEEEeecCCCCCC-----CCCCCeEEEeCCCcchhHHHHHHHH
Q 014605 247 GIYIPAWFQKGSLPRP-----PPSVPLILIGPGTGCAPFRGFVEER 287 (421)
Q Consensus 247 G~~v~i~~~~g~F~lp-----~~~~piimIa~GTGIAPf~s~l~~~ 287 (421)
.+.|.|.-..|-|... .|...-||+|+|.-|-||.++-++-
T Consensus 94 e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qH 139 (167)
T KOG4576|consen 94 ETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQH 139 (167)
T ss_pred ccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHh
Confidence 4555555555554322 4556779999999999999997754
No 128
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=25.52 E-value=45 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=20.5
Q ss_pred cCCCcccCCCCEEEEccCCCHHHHHHHHHHcC
Q 014605 50 VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 81 (421)
Q Consensus 50 ~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~ 81 (421)
+.++...++||.|.|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 345788999999999765 456999988876
No 129
>PRK08051 fre FMN reductase; Validated
Probab=24.75 E-value=1.3e+02 Score=27.90 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.4
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEcc
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILP 66 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p 66 (421)
+|++++.++ .++++|+|..+ ....|+||.++.|..
T Consensus 6 ~v~~i~~~~-----~~~~~l~l~~~-~~~~~~pGQ~v~l~~ 40 (232)
T PRK08051 6 KVTSVEAIT-----DTVYRVRLVPE-APFSFRAGQYLMVVM 40 (232)
T ss_pred EEEEEecCC-----CCeEEEEEecC-CCCccCCCCEEEEEc
Confidence 677777776 47889999865 468999999999974
No 130
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=24.54 E-value=1.2e+02 Score=28.20 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=29.3
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~ 67 (421)
+|++.+.++ .++++|+|+.++....|+||.++.|..+
T Consensus 21 ~v~~i~~~~-----~~~~~i~l~~~~~~~~~~pGQ~i~l~~~ 57 (243)
T cd06216 21 RVVAVRPET-----ADMVTLTLRPNRGWPGHRAGQHVRLGVE 57 (243)
T ss_pred EEEEEEEcC-----CCcEEEEEecCCCCCCcCCCceEEEEEE
Confidence 788888876 4788999997644468999999999754
No 131
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=23.82 E-value=85 Score=26.87 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=39.8
Q ss_pred hcccccCCCCcHHHHHHHHHhcCCh----------hHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 119 LTMDVTSASPRRYFFEVMSYFATAE----------HEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 119 ~~~Dl~~~~p~~~~l~~la~~~~~~----------~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
.||+-.+.-|++.++..|.....+. -||.+|.+|+.. -.+|.+.+..=...++|++.-|.
T Consensus 47 efL~~~~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~--~p~~~~~l~~I~~r~vDL~~~f~ 116 (130)
T PF11074_consen 47 EFLADPGEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAEL--FPDYAEKLNSIIERTVDLLDPFK 116 (130)
T ss_pred HHhccCCCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455433379999999998888766 799999999873 34454444433445666655444
No 132
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=23.24 E-value=86 Score=30.09 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=36.1
Q ss_pred ccHHHHHHhcccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcC
Q 014605 111 IKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS 154 (421)
Q Consensus 111 ~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~ 154 (421)
=-|+++|-.||+.++ .+.++...|..|..+.+.|+-|.+|-+
T Consensus 215 e~Lqd~fh~fLEeRG--I~esl~~FL~~ym~~Kd~rEYl~Wlks 256 (263)
T KOG2536|consen 215 EELQDSFHRFLEERG--IKESLASFLHAYMKNKDSREYLRWLKS 256 (263)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 358999999999999 688999999999999888888877743
No 133
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=1.8e+02 Score=26.88 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=11.0
Q ss_pred HhcCCCEEEEeCCC
Q 014605 363 LLLSKASIYVAGSA 376 (421)
Q Consensus 363 ~l~~~~~iyVCG~~ 376 (421)
...++..|++||+.
T Consensus 107 ~~~~NmvImLiGNK 120 (216)
T KOG0098|consen 107 HSNENMVIMLIGNK 120 (216)
T ss_pred hcCCCcEEEEEcch
Confidence 33458999999997
No 134
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.49 E-value=3.9e+02 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=19.4
Q ss_pred CCCEEEEeCCCCccHHHHHHHHHHHHH
Q 014605 366 SKASIYVAGSATKMPSDVWSTFEEIVS 392 (421)
Q Consensus 366 ~~~~iyVCG~~~~m~~~V~~~L~~i~~ 392 (421)
.+..|-|+|+-..+++++.+++.++-.
T Consensus 108 ~~iri~viG~~~~Lp~~~~~~~~~~e~ 134 (251)
T PRK14830 108 NNVKVNVIGDTDRLPEHTLRALEKAIE 134 (251)
T ss_pred cCCEEEEEcChhhCCHHHHHHHHHHHH
Confidence 477888888876777777777766553
No 135
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=22.07 E-value=1.5e+02 Score=27.58 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=27.8
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
+|++.+.+|+ +++.++|..+ ....|+||.++.|.-.+
T Consensus 1 ~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~ 37 (241)
T cd06195 1 TVLKRRDWTD-----DLFSFRVTRD-IPFRFQAGQFTKLGLPN 37 (241)
T ss_pred CeEEEEEcCC-----CEEEEEEcCC-CCCccCCCCeEEEeccC
Confidence 3667777763 5888888876 36789999999996443
No 136
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.00 E-value=6.4e+02 Score=23.65 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=62.9
Q ss_pred CcccCCCCEEEEccCCCHHHHH----HHHHHcCCCCCceEEEeeCCcc---------CCCCCccCCCCCccccHHHHHHh
Q 014605 53 AIEYEVGDVLEILPSQDPAAVD----TFIQRCNLDPDALITVQHKEMK---------NYLPDIHKNTTEVPIKLRTFVEL 119 (421)
Q Consensus 53 ~~~y~~GD~l~v~p~N~~~~V~----~~l~~l~l~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~tl~~~l~~ 119 (421)
+++=-||-..+-+|+|+....+ ++.+++|.|-.. +....+. ..+|--++..+...--+.-++-+
T Consensus 126 Dl~NVPGtya~plPenp~~vA~el~~Ei~rr~GvDV~v---~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~Gfl~GR 202 (278)
T COG4071 126 DLTNVPGTYACPLPENPKKVAEELYKEIKRRLGVDVVV---MVADTDATYRILGFYFTALPYAIPGIISGTGVFGFLLGR 202 (278)
T ss_pred cccCCCcceeccCCCChHHHHHHHHHHHHHHhCCceEE---EEecCchHHHHHHHHHhhccccCCCeecccchHHHHHHH
Confidence 4566799999999999865444 445678866322 2111111 12221111122334446667777
Q ss_pred cccccCCCCcHHHHHHHHHhcCChhHHHHHHhhcCCCChHHHHHHHHhcCCCHHHHhhhCC
Q 014605 120 TMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 180 (421)
Q Consensus 120 ~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~tl~d~l~~f~ 180 (421)
..|-+- +|++- |- ..+..++.+.++++ ..+-++-....+.|+.|+|++|.
T Consensus 203 l~~~t~-~pTPl-----Ai--ag~V~~~~~iel~~---~Ae~~~r~~~~r~tvyd~lee~~ 252 (278)
T COG4071 203 LADVTK-IPTPL-----AI--AGEVYKKYSIELTR---IAEICDRVHKTRKTVYDVLEEYS 252 (278)
T ss_pred hhcccc-CCCcc-----ee--ccchhHHHHHHHHH---HHHHHHhhCcchhhHHHHHHHhC
Confidence 888777 66653 11 12444444445543 12223334445669999999996
No 137
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.89 E-value=1.2e+02 Score=30.45 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.2
Q ss_pred CeEEEeCCCc--chhHHHHHHHHHHh
Q 014605 267 PLILIGPGTG--CAPFRGFVEERAIQ 290 (421)
Q Consensus 267 piimIa~GTG--IAPf~s~l~~~~~~ 290 (421)
.+++.|+||| |-|-+++.++....
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 5899999999 89999999998764
No 138
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=21.87 E-value=1.3e+02 Score=27.47 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=23.5
Q ss_pred CcEEEEEEEecCCCcccCCCCEEEEccCC
Q 014605 40 KDVHHFEFEFVSAAIEYEVGDVLEILPSQ 68 (421)
Q Consensus 40 ~~v~~i~l~~~~~~~~y~~GD~l~v~p~N 68 (421)
.+++.++|+.+ ....|+||.++.|...+
T Consensus 9 ~~~~~i~l~~~-~~~~~~pGQ~v~l~~~~ 36 (222)
T cd06194 9 PDVLRVRLEPD-RPLPYLPGQYVNLRRAG 36 (222)
T ss_pred CCEEEEEEecC-CCCCcCCCCEEEEEcCC
Confidence 58889999976 46889999999998654
No 139
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.75 E-value=2.8e+02 Score=26.42 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=34.9
Q ss_pred EEEEeccCCCC--cccchhhH---HHcHHHHHHH-hcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 014605 335 FYVAFSRKQPQ--KVYVQHKM---LEQSQRIWNL-LLSKASIYVAGSATKMPSDVWSTFEEIVSK 393 (421)
Q Consensus 335 ~~~a~Sr~~~~--k~yVqd~l---~~~~~~v~~~-l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~ 393 (421)
-+.|||.+.-. +.-|+.++ .+......+. ...+..|.++|+...+++++.+.+.++...
T Consensus 57 TvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~ 121 (241)
T PRK14842 57 SLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAK 121 (241)
T ss_pred EEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHH
Confidence 45677765431 22333333 3322222222 334888999999888888888888887643
No 140
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=21.63 E-value=2e+02 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=29.5
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCC-----CcccCCCCEEEEccCC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSA-----AIEYEVGDVLEILPSQ 68 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~-----~~~y~~GD~l~v~p~N 68 (421)
+|++.+.++ .+++.+.|+.++. ...|+||.++.|..+.
T Consensus 5 ~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 47 (236)
T cd06210 5 EIVAVDRVS-----SNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG 47 (236)
T ss_pred EEEEEeecC-----CceEEEEEEeCCcccccccCCcCCCCEEEEEcCC
Confidence 677777776 5788999998732 3789999999997553
No 141
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.48 E-value=50 Score=26.40 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=9.8
Q ss_pred EEEeCCCcchh
Q 014605 269 ILIGPGTGCAP 279 (421)
Q Consensus 269 imIa~GTGIAP 279 (421)
|+++||+|+|-
T Consensus 5 ILvvCgsG~~T 15 (94)
T PRK10310 5 IIVACGGAVAT 15 (94)
T ss_pred EEEECCCchhH
Confidence 89999999965
No 142
>PRK05713 hypothetical protein; Provisional
Probab=21.47 E-value=1.5e+02 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.6
Q ss_pred eEEEeeeecCCCCCCcEEEEEEEecCCCcccCCCCEEEEccC
Q 014605 26 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 67 (421)
Q Consensus 26 ~v~~~~~lt~~~~~~~v~~i~l~~~~~~~~y~~GD~l~v~p~ 67 (421)
+|++++.++ .+++.++|+.+ ..+.|+||.++.|...
T Consensus 95 ~V~~~~~~t-----~dv~~l~l~~~-~~~~~~~GQfv~l~~~ 130 (312)
T PRK05713 95 RVVALDWLG-----GDVLRLRLEPE-RPLRYRAGQHLVLWTA 130 (312)
T ss_pred EEEEEecCC-----CCEEEEEEccC-CcCCcCCCCEEEEecC
Confidence 788888877 47889999865 5689999999999864
No 143
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=21.23 E-value=1.4e+02 Score=26.95 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=23.4
Q ss_pred CcEEEEEEEecCCC--cccCCCCEEEEccCC
Q 014605 40 KDVHHFEFEFVSAA--IEYEVGDVLEILPSQ 68 (421)
Q Consensus 40 ~~v~~i~l~~~~~~--~~y~~GD~l~v~p~N 68 (421)
.+++.++|+.+... ..|+||+++.|..++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~ 38 (211)
T cd06185 8 PDIRSFELEAPDGAPLPAFEPGAHIDVHLPN 38 (211)
T ss_pred CCeEEEEEEeCCCCcCCCCCCCceEEEEcCC
Confidence 57889999987332 489999999999765
No 144
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=21.07 E-value=28 Score=19.00 Aligned_cols=9 Identities=56% Similarity=1.076 Sum_probs=6.8
Q ss_pred CcchhHHHH
Q 014605 275 TGCAPFRGF 283 (421)
Q Consensus 275 TGIAPf~s~ 283 (421)
.|++|||+=
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 688888864
No 145
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.57 E-value=2.9e+02 Score=26.47 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=35.6
Q ss_pred EEEEeccCCCC--cccchh---hHHHcHHHHHH-HhcCCCEEEEeCCCCccHHHHHHHHHHHHHHh
Q 014605 335 FYVAFSRKQPQ--KVYVQH---KMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 394 (421)
Q Consensus 335 ~~~a~Sr~~~~--k~yVqd---~l~~~~~~v~~-~l~~~~~iyVCG~~~~m~~~V~~~L~~i~~~~ 394 (421)
...|||.+.-. +.-|.. ++.+......+ +...+..|-++|+-..+++++++++.++....
T Consensus 71 TvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T 136 (250)
T PRK14840 71 TLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSAT 136 (250)
T ss_pred EEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 35567765431 222333 33333222222 33348889999998888888888888876543
Done!