BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014606
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 38/295 (12%)
Query: 110 LITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSLA 169
L+ + P V ++ GL+ +VR L GC AG ++ LAKDL + +
Sbjct: 151 LVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARV 210
Query: 170 LVLSMESVS---SNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYELQHLVRTH 226
LV++ E + +G + + L LF G A +++ +D +R +E+ +T
Sbjct: 211 LVVAAELTLMYFTGPDEGCFRTL-LVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTI 269
Query: 227 LGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVS 286
+ D A F E +G G R + + G+ ++ + + + L+
Sbjct: 270 IPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLGGDGG 319
Query: 287 VTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYR 346
W ++ + VH G ++D + L L+ + AS+ L
Sbjct: 320 GGWNDLF-------------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSD 360
Query: 347 FGNTSSSSVWYELSYLEAKGKVKKGDKIW-----QLAFGSGFKCNSAVWKCISNL 396
+GN S ++V + L L + K W +AFG G ++ + S++
Sbjct: 361 YGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHV 415
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 38/298 (12%)
Query: 106 SIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQK 165
I L+ + P V ++ GL+ +VR L GC AG ++ LAKDL +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 166 NSLALVLSMESVS---SNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYELQHL 222
+ LV++ E + +G + + L LF G A +++ +D +R +E+
Sbjct: 177 GARVLVVAAELTLMYFTGPDEGCFRTL-LVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 223 VRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVW 282
+T + D A F E +G G R + + G+ ++ + + + L+
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 285
Query: 283 YAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKT 342
W ++ + VH G ++D + L L+ + AS+
Sbjct: 286 GDGGGGWNDLF-------------------WAVHPGSSTIMDQVDAALGLEPGKLAASRR 326
Query: 343 TLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIW-----QLAFGSGFKCNSAVWKCISN 395
L +GN S ++V + L L + K W +AFG G ++ + S+
Sbjct: 327 VLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSH 384
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 104 PKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLR 162
PKS I LI + P ++ GL +V+ + L G +AG + LAKDL
Sbjct: 125 PKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAE 184
Query: 163 VQKNSLALVLSMESVSSNGYQGKVKYMQ--LANCLFRMGGAGILL-SNKKEDRQRAKYEL 219
K S L++ E + + ++ +A LF G A +++ S +R +E+
Sbjct: 185 NNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEI 244
Query: 220 QHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSE 279
+T L + A K H EG L R + + + ++
Sbjct: 245 VSTDQTILPDTEKAMKL----HLREGGLTFQLHRDVPLMVAKNIE--------------- 285
Query: 280 LVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEA 339
+ K + P G I D+ F + VH GG+A++D ++ L LK+ + A
Sbjct: 286 ------NAAEKALSPLG------ITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRA 331
Query: 340 SKTTLYRFGNTSSSSVWYELSYLE----AKGKVKKGDKI---WQLAFGSGFKCNSAVWKC 392
S+ L +GN S+ V + + + A+GK G+ + FG G + V +
Sbjct: 332 SRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRS 391
Query: 393 I 393
+
Sbjct: 392 V 392
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 41/270 (15%)
Query: 121 PSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSLALVLSME--SVS 178
P V +I GL +V+ + + GC AG + LAKDL K++ L++ E SV+
Sbjct: 139 PGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVT 198
Query: 179 SNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYELQHLVRTHLGSKDTAYKCV 237
G + LF G A I++ S+ + + +E+ + + + A +
Sbjct: 199 FRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQQLVPNSHGAIGGL 258
Query: 238 FQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTWKKIWPPGR 297
+E + S+ I Q +AL L + Y+ + W A
Sbjct: 259 LREVGLTFYLNKSVPDIISQNINDALSKAFDPLG--ISDYNSIFWIA------------- 303
Query: 298 KRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWY 357
H GG+A++D ++E + LK ++A++ L +GN SS+ V++
Sbjct: 304 ------------------HPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFF 345
Query: 358 ELSYLEAK----GKVKKGDKI-WQLAFGSG 382
+ + K G G+ + W + FG G
Sbjct: 346 IMDLMRKKSLEAGLKTTGEGLDWGVLFGFG 375
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 128/340 (37%), Gaps = 75/340 (22%)
Query: 84 ELKTVLFSIVQDLFSKHKINPKSIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLS 143
E K+ + +++Q ++ ID++I PS+ A +IN+ G S R ++
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIA 142
Query: 144 GMGCSAGILSISLAKDLLRV--QKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGA 201
+GC+AG +I+ A D + N+L + S+ V + L N LF G A
Sbjct: 143 QLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSL-LCNGLFGDGIA 201
Query: 202 GILLSNKKEDRQRAKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGE 261
++ + G TGV L R+
Sbjct: 202 AAVVRGR------------------------------------GGTGVRLERN------- 218
Query: 262 ALKANMATLAAMVLPYSE-LVWYAVSVT-----WKKIWPPGRKRGPYIPDFRK-AFEH-- 312
+ ++P +E + Y V T K P + P P ++ A EH
Sbjct: 219 ---------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATME--PLAPALKELAGEHGW 267
Query: 313 -------FCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAK 365
+ VHAGG ++D + L++ S+ TL +GN +S+ V L L +
Sbjct: 268 DASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDE 327
Query: 366 GKVKKGDKIWQLAFGSGFKCNSAV--WKCISNLRPEKSNV 403
G V++G + FG G ++ W+ R + +V
Sbjct: 328 GGVEEGARGLLAGFGPGITAEMSLGCWQTADVRRGIRQDV 367
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 46/291 (15%)
Query: 103 NPKSIDILITNCSVS-CPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS + C+ S P + N GL+ +VR L GC AG + AKDL
Sbjct: 706 QPKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLA 765
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
+ LV+ E V+ G + LF G A +++ S+ +R ++
Sbjct: 766 ENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQ 825
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
L +T + + A +E G++ L N+ TL S
Sbjct: 826 LVSAAQTFIPNSAGAIAGNLRE------VGLTFH----------LWPNVPTL------IS 863
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
E V ++ + + I D+ F + H GG A++DA++ L L + +E
Sbjct: 864 ENVEKCLTQAFDPLG---------ISDWNSLF--WIAHPGGPAILDAVEAKLNLDKKKLE 912
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKI-------WQLAFGSG 382
A++ L +GN SS+ V + L E + K KG++ W + FG G
Sbjct: 913 ATRHVLSEYGNMSSACVLFILD--EMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 119/303 (39%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + GC AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 115/290 (39%), Gaps = 44/290 (15%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI C P + L +V+ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 162 RVQKNSLALVLSMESVSSNGYQGKVKYM---QLANCLFRMGGAGILLSNKKE-DRQRAKY 217
K + L++ E +++ ++G + + LF G A +++ + +R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIF 233
Query: 218 ELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPY 277
EL TA V + H + G L++ ++ +P
Sbjct: 234 ELV----------STAQTIVPESHG--------------AIEGHLLESGLSFHLYKTVP- 268
Query: 278 SELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDV 337
L+ + + P I D+ F + H GG A++D + + L+ +
Sbjct: 269 -TLISNNIKTCLSDAFTPLN-----ISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKL 320
Query: 338 EASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQLAFGSG 382
+ ++ L +GN SS++V++ + + K G+ G+ + W + FG G
Sbjct: 321 KVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKSIDILITNCSVSCPT-PSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS + CS + P P + GL+ V+ + GC AG + LAKDL
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 183 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 242
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ + + + N+ A+V +
Sbjct: 243 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLKGAVPDIVSKNITK--ALVEAFE 292
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 293 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 329
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 330 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 389
Query: 392 CIS 394
++
Sbjct: 390 SVA 392
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 30/274 (10%)
Query: 110 LITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSLA 169
+++ S P V +I+ GL +V L+ MGC AG+ S+ A L + +
Sbjct: 120 IVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRI 179
Query: 170 LVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYELQHLVRTHLGS 229
LV+ E S + +A+ +F G A ++ + YE+ + +
Sbjct: 180 LVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPN 239
Query: 230 KDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTW 289
+ A + + + EG+ + L SI V G ++A + TL L ++L + +++
Sbjct: 240 TENA---MVWDLEKEGWN-LGLDASIPIVIGSGIEAFVDTL----LDKAKL-QTSTAISA 290
Query: 290 KKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGN 349
K F +H GGK+++ I+ +L + + + + + +GN
Sbjct: 291 KDC-------------------EFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGN 331
Query: 350 TSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGF 383
SS+SV + + + K K I LAFG G
Sbjct: 332 MSSASVIFVMDHAR-KSKSLPTYSI-SLAFGPGL 363
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 106/286 (37%), Gaps = 42/286 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I L+ + P + GL+ V+ L G AG + +AKDL
Sbjct: 132 QPKSKITHLVFATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLA 191
Query: 162 RVQKNSLALVLSMESVSSNGYQGKVKYMQ--LANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV E + ++ + + LF G A +++ S+ ++ +E
Sbjct: 192 ENNKGARVLVACSEVTAVTFRAPSETHLDGLVGSALFGDGAAALIVGSDPVPQEEKPLFE 251
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ L D A +E L +L+ + N+ + A L Y
Sbjct: 252 IHWAGEAVLPDSDGAINGHLRE--------AGLIFHLLKDVPGLISKNIDKVLAEPLEYV 303
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
+ P + F + VH GG A++D I+ L L ++
Sbjct: 304 -----------------------HFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQ 338
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFK 384
AS+ L +GN SS+SV + L + K +++ G GF+
Sbjct: 339 ASRDVLASYGNMSSASVLFVLDQIR-----KNSEELHLPTTGEGFE 379
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 44/290 (15%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI C P + L +V+ F +GC AG + LAKD+
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 162 RVQKNSLALVLSMESVSSNGYQGKVKYM---QLANCLFRMGGAGILLSNKKE-DRQRAKY 217
K + L++ E +++ ++G + + + G A +++ + +R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIF 233
Query: 218 ELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPY 277
EL TA V + H + G L++ ++ +P
Sbjct: 234 ELV----------STAQTIVPESHG--------------AIEGHLLESGLSFHLYKTVP- 268
Query: 278 SELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDV 337
L+ + + P I D+ F + H GG A++D + + L+ +
Sbjct: 269 -TLISNNIKTCLSDAFTPLN-----ISDWNSLF--WIAHPGGPAILDQVTAKVGLEKEKL 320
Query: 338 EASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQLAFGSG 382
+ ++ L +GN SS++V++ + + K G+ G+ + W + FG G
Sbjct: 321 KVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDAHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDVHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDLHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 118 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 177
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 178 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 237
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 238 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 287
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 288 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 324
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 325 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 384
Query: 392 CIS 394
++
Sbjct: 385 SVA 387
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 42/289 (14%)
Query: 109 ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSL 168
+ T+C V P+ + GL +NV + + G AG + AKDL + +
Sbjct: 141 VFCTSCGVDMPSADFQCAKL--LGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGAR 198
Query: 169 ALVLSMESVSSNGYQGKVKYMQ--LANCLFRMGGAGILL-SNKKEDRQRAKYELQHLVRT 225
LV+ E ++ + LF G A +++ S+ ++ +E+ +T
Sbjct: 199 VLVVCAELTIMGLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGVEKPMFEIVCTKQT 258
Query: 226 HLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAV 285
+ + + +E TG+ S K + T++ V V+ +V
Sbjct: 259 VIPNTEDVIHLHLRE------TGMMFYLS---------KGSPMTISNNVEACLIDVFKSV 303
Query: 286 SVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLY 345
+T PP D+ F + H GG+A++D ++ LKL+ A++T L+
Sbjct: 304 GIT-----PP--------EDWNSLF--WIPHPGGRAILDQVEAKLKLRPEKFRAARTVLW 348
Query: 346 RFGNTSSSSVWYELSYLE----AKGKVKKGDKI-WQ--LAFGSGFKCNS 387
+GN S+SV Y L + AKG G+ + W L FG G +
Sbjct: 349 DYGNMVSASVGYILDEMRRKSAAKGLETYGEGLEWGVLLGFGPGITVET 397
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 239 MVWTAQTIAPDSEGAIDFHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 288
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 289 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 325
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 326 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 385
Query: 392 CIS 394
++
Sbjct: 386 SVA 388
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 316 HAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLE----AKGKVKKG 371
H GG+A++D ++ LKL+ A++T L+ +GN S+SV Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 372 DKI-WQ--LAFGSGFKCNS 387
+ + W L FG G +
Sbjct: 379 EGLEWGVLLGFGPGITVET 397
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 109/262 (41%), Gaps = 42/262 (16%)
Query: 109 ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSL 168
++ T V+ P +A + GL+ NVR + G AG + +AKDL + N+
Sbjct: 146 VMATTSGVNMPGAELATAKL--LGLRPNVRRVMMYQQGXFAGATVLRVAKDL--AENNAG 201
Query: 169 ALVLSM-ESVSSNGYQGKVKYM---QLANCLFRMGGAGILL-SNKKEDRQRAKYELQHLV 223
A VL++ V++ ++ + + + LF G A +++ S+ + +R YE+
Sbjct: 202 ARVLAICSEVTAVTFRAPSETHIDGLVGSALFGDGAAAVIVGSDPRPGIERPIYEMHWAG 261
Query: 224 RTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWY 283
L D A D T L +L+ + N + + LV
Sbjct: 262 EMVLPESDGAI--------DGHLTEAGLVFHLLKDVPGLITKN---IGGFLKDTKNLVGA 310
Query: 284 AVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTT 343
+ +W +++ + VH GG A++D ++ L+L+ +AS+
Sbjct: 311 S---SWNELF-------------------WAVHPGGPAILDQVEAKLELEKGKFQASRDI 348
Query: 344 LYRFGNTSSSSVWYELSYLEAK 365
L +GN SS+SV + L + +
Sbjct: 349 LSDYGNMSSASVLFVLDRVRER 370
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 115/308 (37%), Gaps = 54/308 (17%)
Query: 90 FSIVQDLFSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCS 148
F V+DL +H + +D +++ + P AA+V +FGLK+ G
Sbjct: 55 FKAVEDLLRRHPGALEGVDAVIVATNTPDALFPDTAALVQARFGLKAFAYDLL---AGXP 111
Query: 149 AGILSISLAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNK 208
I +++ A L+ L + E++S + + A + G G + K
Sbjct: 112 GWIYALAQAHALVEAGLAQKVLAVGAEALSK-----IIDWNDRATAVLFGDGGGAAVVGK 166
Query: 209 KEDRQRAKYELQHLV--RTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALK-- 264
R Y + V G+K+ + CV D G S+ + E K
Sbjct: 167 ----VREGYGFRSFVLGADGTGAKELYHACVAPRLPD----GTSMKNRLYMNGREVFKFA 218
Query: 265 ---ANMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKA 321
N ATL A+ K G D R F H
Sbjct: 219 VRVMNTATLEAI-----------------------EKAGLTPEDIRL----FVPHQANLR 251
Query: 322 VIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGS 381
+IDA +E L L E + R+GNTS++S+ L G++++GD + ++FG+
Sbjct: 252 IIDAARERLGLP---WERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 382 GFKCNSAV 389
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 44/291 (15%)
Query: 114 CSVSCPT-PSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSLALVL 172
CS + P P V GL +V+ + GC AG + +AKDL + + LV+
Sbjct: 153 CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVI 212
Query: 173 SMESVSSNGYQGKVKYMQ--LANCLFRMGGAGILL-SNKKEDRQRAKYELQHLVRTHLGS 229
E+ + ++ + LF G + +++ ++ ++A +E+ +T + +
Sbjct: 213 CSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPN 272
Query: 230 KDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTW 289
+ A +E V L+ + + + AN+ MV +S+
Sbjct: 273 SEGAIGGKVRE--------VGLTFQLKGAVPDLISANIEN--CMVEAFSQF--------- 313
Query: 290 KKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGN 349
I D+ K F + VH GG+A++D ++ L L + ++ + +GN
Sbjct: 314 ------------KISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGN 359
Query: 350 TSSSSVWYELSYLE----AKGKVKKGDKIWQ---LAFGSGFKCNSAVWKCI 393
SS+ V + L G G+ + FG G + V K +
Sbjct: 360 MSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 410
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 111/301 (36%), Gaps = 44/301 (14%)
Query: 104 PKSIDILITNCSVS-CPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLR 162
PKS + CS+S P + GL V + C G + +AKDL
Sbjct: 120 PKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAE 179
Query: 163 VQKNSLALVLSME--SVSSNG-YQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYEL 219
+ + LV++ E +S G +G + + GA ++ ++ E ++ YE+
Sbjct: 180 NNRGARVLVVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLEGIEKPIYEI 239
Query: 220 QHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSE 279
++ + A + + L I G +L+ +A L V +++
Sbjct: 240 AAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLG--VREWND 297
Query: 280 LVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEA 339
+ W A H G A+IDAI+ L+L +
Sbjct: 298 VFWVA-------------------------------HPGNWAIIDAIEAKLQLSPDKLST 326
Query: 340 SKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQ--LAFGSGFKCNSAVWKC 392
++ +GN S++V++ + L + G+ GD + W L FG G + V +
Sbjct: 327 ARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRS 386
Query: 393 I 393
+
Sbjct: 387 M 387
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 44/291 (15%)
Query: 114 CSVSCPT-PSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSLALVL 172
CS + P P V GL +V+ + GC AG + +AKDL + + LV+
Sbjct: 137 CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVI 196
Query: 173 SMESVSSNGYQGKVKYMQ--LANCLFRMGGAGILL-SNKKEDRQRAKYELQHLVRTHLGS 229
E+ + ++ + LF G + +++ ++ ++A +E+ +T + +
Sbjct: 197 CSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPN 256
Query: 230 KDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTW 289
+ A +E V L+ + + + AN+ MV +S+
Sbjct: 257 SEGAIGGKVRE--------VGLTFQLKGAVPDLISANIEN--CMVEAFSQF--------- 297
Query: 290 KKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGN 349
I D+ K F + VH GG+A++D ++ L L + ++ + +GN
Sbjct: 298 ------------KISDWNKLF--WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGN 343
Query: 350 TSSSSVWYELSYLE----AKGKVKKGDKIWQ---LAFGSGFKCNSAVWKCI 393
SS+ V + L G G+ + FG G + V K +
Sbjct: 344 MSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSV 394
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 303 IPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYL 362
I D+ F + H GG A++D +++ L LK + A++ L +GN SS+ V + L +
Sbjct: 292 ISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEM 349
Query: 363 EAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWKCIS 394
K G G+ + W + FG G + V + ++
Sbjct: 350 RKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA 388
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 118 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 177
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 178 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 237
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 238 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 287
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + GG A++D +++ L LK +
Sbjct: 288 PL---------------------GISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMN 324
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +GN SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 325 ATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 384
Query: 392 CIS 394
++
Sbjct: 385 SVA 387
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 117/303 (38%), Gaps = 44/303 (14%)
Query: 103 NPKS-IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
PKS I LI + P + GL+ V+ + + G AG + LAKDL
Sbjct: 117 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 176
Query: 162 RVQKNSLALVLSME--SVSSNGYQGKVKYMQLANCLFRMGGAGILL-SNKKEDRQRAKYE 218
K + LV+ E +V+ G + LF G A +++ S+ + ++ +E
Sbjct: 177 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 236
Query: 219 LQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYS 278
+ +T + A +E L+ +L+ + N+ A+V +
Sbjct: 237 MVWTAQTIAPDSEGAIDGHLRE--------AGLTFHLLKDVPGIVSKNITK--ALVEAFE 286
Query: 279 ELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVE 338
L I D+ F + H GG A++D +++ L LK +
Sbjct: 287 PL---------------------GISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMN 323
Query: 339 ASKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQL--AFGSGFKCNSAVWK 391
A++ L +G SS+ V + L + K G G+ + W + FG G + V +
Sbjct: 324 ATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLR 383
Query: 392 CIS 394
++
Sbjct: 384 SVA 386
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 112/301 (37%), Gaps = 44/301 (14%)
Query: 104 PKSIDILITNCSVS-CPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLR 162
PKS + CS+S P + GL V + C G + +AKDL
Sbjct: 120 PKSEITHLVFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAE 179
Query: 163 VQKNSLALVLSME-SVSSNGYQGKVKYMQLANCLFRMGGAGILL--SNKKEDRQRAKYEL 219
+ + LV++ E +V S + + LA GAG ++ ++ E ++ YE+
Sbjct: 180 NNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEI 239
Query: 220 QHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLPYSE 279
++ + A + + L I G +L+ +A L V +++
Sbjct: 240 AAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLG--VREWND 297
Query: 280 LVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEA 339
+ W A H G A+IDAI+ L+L +
Sbjct: 298 VFWVA-------------------------------HPGNWAIIDAIEAKLQLSPDKLST 326
Query: 340 SKTTLYRFGNTSSSSVWYELSYLEAK----GKVKKGDKI-WQ--LAFGSGFKCNSAVWKC 392
++ +GN S++V++ + L + G+ GD + W L FG G + V +
Sbjct: 327 ARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRS 386
Query: 393 I 393
+
Sbjct: 387 M 387
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDAGNCFIFADGAAAVVVG-------- 198
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 199 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 247
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 248 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLR 296
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 297 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDAGNCFIFADGAAAVVVG-------- 198
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 199 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 247
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 248 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLR 296
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 297 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLSA-GCAGFGYALG 130
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDRGNCFIFADGAAAVVVG-------- 177
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 178 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 226
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 227 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLR 275
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 276 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS GC+ ++
Sbjct: 93 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 150
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 151 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDRGNCFIFADGAAAVVVG-------- 197
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 198 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 246
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 247 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLR 295
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 296 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 351
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 64/298 (21%)
Query: 94 QDLFSKHKINPKSIDILI-TNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGIL 152
++ + ++P+ +D++I + PS A +V + K V +F +S CS I
Sbjct: 59 KEALREANLSPEELDLIILATLTPQKRFPSTACLVQAQLKAK-GVYAFDISA-ACSGFIY 116
Query: 153 SISLAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNKKED- 211
++ +A ++ K LV+ E +S V + + C+ GAG ++ + ED
Sbjct: 117 ALDIADSFIKSGKAKNVLVIGAEKLSE-----AVDWEDRSTCVLFGDGAGAVVVTRSEDK 171
Query: 212 ------RQRAKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKA 265
R A+ L+ L+ A C + V++ RS+ +V E L+
Sbjct: 172 SDILATRMYAEGSLEELLH--------ADNCGYIRMKGRELFKVAV-RSMEEVCREVLEK 222
Query: 266 NMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDA 325
A V P VS+ IP H +I+A
Sbjct: 223 ------AGVKPEE------VSLV--------------IP-----------HQANVRIINA 245
Query: 326 IKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGF 383
+ E L + V + + ++GNTS++S+ L +GKVK+GD I A G G
Sbjct: 246 LAEKLNIPKEKVFVN---IQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 106/289 (36%), Gaps = 34/289 (11%)
Query: 107 IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKN 166
I +L+ S P V ++ + GL ++ ++ MGC+A + ++ A + +R
Sbjct: 135 IGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPA 194
Query: 167 SLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYELQHLVRTH 226
ALV+ +E S N + + LF G A +++ + V+
Sbjct: 195 MKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQ-------------VQEK 241
Query: 227 LGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLP-YSELVWYAV 285
L + F + D G+ L + + E + + + V P +E++W
Sbjct: 242 LEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLW--- 298
Query: 286 SVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLY 345
G I D + + +H GG +I+ +L + S L
Sbjct: 299 ------------DNGLQISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLA 342
Query: 346 RFGNTSSSSVWYELSYLEAKGKVKKGDKIW-QLAFGSGFKCNSAVWKCI 393
RFGN S S+ + L + + + K AFG G ++ I
Sbjct: 343 RFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDII 391
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 106/289 (36%), Gaps = 34/289 (11%)
Query: 107 IDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKN 166
I +L+ S P V ++ + GL ++ ++ MGC+A + ++ A + +R
Sbjct: 135 IGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPA 194
Query: 167 SLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQRAKYELQHLVRTH 226
ALV+ +E S N + + LF G A +++ + V+
Sbjct: 195 MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQ-------------VQEK 241
Query: 227 LGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALKANMATLAAMVLP-YSELVWYAV 285
L + F + D G+ L + + E + + + V P +E++W
Sbjct: 242 LEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLW--- 298
Query: 286 SVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLY 345
G I D + + +H GG +I+ +L + S L
Sbjct: 299 ------------DNGLQISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLA 342
Query: 346 RFGNTSSSSVWYELSYLEAKGKVKKGDKIW-QLAFGSGFKCNSAVWKCI 393
RFGN S S+ + L + + + K AFG G ++ I
Sbjct: 343 RFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDII 391
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 342 TTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSA--VW 390
T GN +SV LS L+ G++KKGD+I L GSG C+ A VW
Sbjct: 295 TIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 342 TTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSA--VW 390
T GN +SV LS L+ G++KKGD+I L GSG C+ A VW
Sbjct: 294 TIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 342 TTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSA--VW 390
T GN +SV LS L+ G++KKGD+I L GSG C+ A VW
Sbjct: 288 TIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLSA-GCAGFGYALG 130
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDRGNCFIFADGAAAVVVG-------- 177
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 178 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 226
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 227 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQFNSRINELLVKNLQLR 275
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 276 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 307 RKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKG 366
R+ + F +H + ++DA+++ +K+ + + GNT SS++ L + A G
Sbjct: 283 RENIDCFVLHQANRFMLDALRKKMKIPEHKF---PVLMEHCGNTVSSTLPLALETMRANG 339
Query: 367 KVKKGDKIWQLAFGSGF 383
+ +G ++ L FG G+
Sbjct: 340 TLARGMRLMLLGFGVGY 356
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 83 EELKTVLFSIVQDLFSKHKINPKSIDILITNCSVSCPT---PSVAAMVINKFGLKSNVRS 139
E + + + LF++ + +D +I C+ P P+ A M+ ++ G+ ++ +
Sbjct: 78 ETAADLAYEAARKLFAQGAVGADQVDFVIL-CT-QAPDYVLPTSACMLQHRLGIPTHAGA 135
Query: 140 FHLSGMGCSAGILSISLAKDLLRVQKNSLALVLSMESVS 178
++ +GCS + +SLAK L+ L+L+ ++ S
Sbjct: 136 LDVN-LGCSGYVYGLSLAKGLVETGAARCVLLLTADTYS 173
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 111/298 (37%), Gaps = 42/298 (14%)
Query: 97 FSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSIS 155
S ++ ID +++T + TP A MV G K + F LS G ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLSAGAAGFG-YALG 130
Query: 156 LAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANC-LFRMGGAGILLSNKKEDRQR 214
A D++R + LV+ E +S + NC +F G A +++
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPT-----IDMYDRGNCFIFADGAAAVVVG-------- 177
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT-GVSLSRSILQVAGEALKANMATLAAM 273
+ Q + T GS + Q+ D F S R +++ G A+
Sbjct: 178 -ETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAV---------- 226
Query: 274 VLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKLK 333
W A K+ GR+ + F H + + + +NL+L+
Sbjct: 227 ------FRWAAF-----KMGDVGRRAMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLR 275
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
V A+ + GNTS++S+ ++ L G K GD + +G+G + V +
Sbjct: 276 PDAVVAND--IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 90 FSIVQDLFSKHKINPKSIDILITNCSVSCPT---PSVAAMVINKFGLKSNVRSFHLSGMG 146
F Q I+P+SID++I + S P PS A ++ NK G++++ +F + +
Sbjct: 70 FIASQRAIEAADIDPQSIDLII--VATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAV- 126
Query: 147 CSAGILSISLAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLS 206
S +++ A +R ++ ALV+ E+ S + + C+ GAG ++
Sbjct: 127 XSGFAYAVATADSFIRSGQHRTALVIGAETFSR-----ILDFKDRTTCVLFGDGAGAVIL 181
Query: 207 NKKED 211
++
Sbjct: 182 QASDE 186
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 343 TLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
T+ GNTS++S+ L G++K+G + G GF ++V +
Sbjct: 284 TVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 307 RKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKG 366
R + H +I A + L + +V TL R GNTS++SV L G
Sbjct: 235 RSQLDWLVPHQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDG 291
Query: 367 KVKKGDKIWQLAFGSGFKCNSAVWK 391
++K G + AFG GF SA+ +
Sbjct: 292 RIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 307 RKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKG 366
R + H +I A + L + +V TL R GNTS++SV L G
Sbjct: 235 RSQLDWLVPHQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDG 291
Query: 367 KVKKGDKIWQLAFGSGFKCNSAVWK 391
++K G + AFG GF SA+ +
Sbjct: 292 RIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 307 RKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKG 366
R + H +I A + L + +V TL R GNTS++SV L G
Sbjct: 258 RSQLDWLVPHQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDG 314
Query: 367 KVKKGDKIWQLAFGSGFKCNSAVWK 391
++K G + AFG GF SA+ +
Sbjct: 315 RIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 42/315 (13%)
Query: 97 FSKHKINPKSIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISL 156
++ ++ P I +++ P V + GL + L G+GCS G+ ++
Sbjct: 122 MAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRT 181
Query: 157 AKDLLRVQ----KNSLALVLSMESVSSNGYQGKVKYM------QLANCLFRMGGAGILLS 206
A +L K + LVL++E VS+ + +++ + ++ LF + ++LS
Sbjct: 182 AANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALFSDCASAVILS 240
Query: 207 N--KKEDRQRAKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAGEALK 264
N + + A Y+L LG ++ + + D GF + ++ L
Sbjct: 241 NGIGEAPGKPAIYDL-------LGWEN---RVIPDSEHDLGFDVDPMGWKVV------LS 284
Query: 265 ANMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVID 324
+ LA L + YA ++ + P + P DF + +H GG ++
Sbjct: 285 PRVPVLAKASLQPT----YADLLSSLQDQLPSSYQKPA--DF-----DWAMHPGGATILS 333
Query: 325 AIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAK--GKVKKGDKIWQLAFGSG 382
+ + L + AS GN+SS++++ L+ L K + G K+ + G
Sbjct: 334 GAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVKEYVVGCA 393
Query: 383 FKCNSAVWKCISNLR 397
F V C+ R
Sbjct: 394 FGPGINVEMCMLKRR 408
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 343 TLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
TL R GNTS++SV L G++K G + AFG GF SA+ +
Sbjct: 268 TLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 343 TLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFKCNSAVWK 391
TL R GNTS++SV L G++K G + AFG GF SA+ +
Sbjct: 268 TLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 120/309 (38%), Gaps = 46/309 (14%)
Query: 83 EELKTVLFSIVQDLFSKHKINPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFH 141
E + T+ F ++ +INP+ I+ I++ S S PS A V + + SF
Sbjct: 56 ETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDAI-SFD 114
Query: 142 LSGMGCSAGILSISLAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGA 201
L+ + + ++S+A +R K ALV + S+ K+ + + GA
Sbjct: 115 LAA-AXTGFVYALSVADQFIRAGKVKKALV-----IGSDLNSRKLDETDRSTVVLFGDGA 168
Query: 202 GILLSNKKEDRQRAKYELQHLVRTHL-GSKDTAYKCVFQEHDDEGFTGVSLSRSILQVAG 260
G ++ E + ++ THL S D V + + G+ S I
Sbjct: 169 GAVILEASEQ--------EGIISTHLHASADKNNALVLAQPE----RGIEKSGYIEMQGN 216
Query: 261 EALKANMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGK 320
E K + L+ +V E A ++ +K + H
Sbjct: 217 ETFKLAVRELSNVV----EETLLANNLD------------------KKDLDWLVPHQANL 254
Query: 321 AVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFG 380
+I A + L++ D+ TL ++ N S+++V L G++++G + AFG
Sbjct: 255 RIITATAKKLEM---DMSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAFG 311
Query: 381 SGFKCNSAV 389
G+ SA+
Sbjct: 312 GGWTWGSAL 320
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 109/290 (37%), Gaps = 63/290 (21%)
Query: 102 INPKSID-ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDL 160
I P+ ID I++ + P P+VA M+ + G L+ CS + S+ AK
Sbjct: 68 IQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAA--CSGFMYSMITAKQY 125
Query: 161 LRVQKNSLALVLSMESVSSNGYQGKVKYMQLAN----CLFRMGGAGILLSNKKEDRQRAK 216
++ LV+ + +S K L + LF G +++ E R
Sbjct: 126 VQSGDYHNILVVGADKLS--------KITDLTDRSTAVLFGDGAGAVIIGEVSEGRGIIS 177
Query: 217 YELQHLVRTHLGSKDTAYKCVFQEHDDEGF--TGVSLSRSILQVAGEALKANMATLAAMV 274
YE+ GS T K ++ + D G + + +++ G+A
Sbjct: 178 YEM--------GSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDA------------ 217
Query: 275 LPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKAFEHFCVHAGGKAVIDAIKENLKL-K 333
S V ++T I + F H ++++ +E L + K
Sbjct: 218 ---STRVVEKANLTSDDI------------------DLFIPHQANIRIMESARERLGISK 256
Query: 334 DRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGF 383
D+ ++ ++GNTS++S+ + GK+K D I + FG G
Sbjct: 257 DK----MSVSVNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGL 302
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 303 IPDFRKAFE----------HFCVHAGGKAVIDAIKENLKLKD-----RDVEASKTTLYRF 347
+P R+A E F H +ID + + L + + RD E +
Sbjct: 234 VPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSRDAEDT------- 286
Query: 348 GNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGFK 384
GNTSS+SV L L G V G + FG+G
Sbjct: 287 GNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLS 323
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 79/391 (20%), Positives = 148/391 (37%), Gaps = 69/391 (17%)
Query: 35 HTERSGTFDSKAVEFQTKVLERSGVGNETCLPCGTHLLPADGSLNSSMEELKTVLFS--- 91
H E A+ T + +RS +GN H L + +++EL V S
Sbjct: 30 HPESPAMKKVLAINRYTGIDQRSSIGNPD------HPL-VNKPNPPTVKELHEVFMSDGV 82
Query: 92 -----IVQDLFSKHKINPKSIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMG 146
+ ++ ++ P I +++ P V + GL + L G+G
Sbjct: 83 PLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIG 142
Query: 147 CSAGILSISLAKDLLRVQ----KNSLALVLSMESVSSNGYQGKVKYM------QLANCLF 196
S G+ ++ A +L K + LVL++E VS+ + +++ + ++ LF
Sbjct: 143 XSGGLAALRTAANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALF 201
Query: 197 RMGGAGILLSNK--KEDRQRAKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFT------G 248
+ ++LSN + + A Y+L LG ++ + + D GF
Sbjct: 202 SDCASAVILSNGIGEAPGKPAIYDL-------LGWEN---RVIPDSEHDLGFDVDPMGWK 251
Query: 249 VSLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRK 308
V LS + +A +L+ A L +S ++ P + P DF
Sbjct: 252 VVLSPRVPVLAKASLQPTYADL--------------LSSLQDQL--PSSYQKPA--DF-- 291
Query: 309 AFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAK--G 366
+ +H GG ++ + + L + AS GN+SS++++ L+ L K
Sbjct: 292 ---DWAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMD 348
Query: 367 KVKKGDKIWQLAFGSGFKCNSAVWKCISNLR 397
+ G K+ + G F V C+ R
Sbjct: 349 ALAPGGKVKEYVVGCAFGPGINVEMCMLKRR 379
>pdb|2X3E|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh From Pseudomonas Aeruginosa Pao1
pdb|2X3E|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh From Pseudomonas Aeruginosa Pao1
Length = 331
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 22/107 (20%)
Query: 310 FEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVK 369
H H ++ A+ + L L VE + + GNT ++S+ L++ +G ++
Sbjct: 244 LHHLVPHQANTRILAAVADQLDLP---VERVVSNIAEVGNTVAASIPLALAHGLRQGILR 300
Query: 370 KGDKIWQLAFGSGFKCNSAVWKCISNLRPEKSNVWSEFILRYPMEVP 416
G + FG+G W LR+P VP
Sbjct: 301 DGGNMVLTGFGAGLT-------------------WGSVALRWPKIVP 328
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 147/390 (37%), Gaps = 67/390 (17%)
Query: 35 HTERSGTFDSKAVEFQTKVLERSGVGNETCLPCGTHLLPADGSLNSSMEELKTVLFS--- 91
H E A+ T + +RS +GN H L + +++EL V S
Sbjct: 30 HPESPAMKKVLAINRYTGIDQRSSIGNPD------HPL-VNKPNPPTVKELHEVFMSDGV 82
Query: 92 -----IVQDLFSKHKINPKSIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMG 146
+ ++ ++ P I +++ P V + GL + L G+G
Sbjct: 83 PLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIG 142
Query: 147 CSAGILSISLAKDLLRVQ----KNSLALVLSMESVSSNGYQGKVKYM------QLANCLF 196
S G+ ++ A +L K + LVL++E VS+ + +++ + ++ LF
Sbjct: 143 XSGGLAALRTAANLCLGHTARGKPARILVLALE-VSTTMVRSELESIDALQETRIGIALF 201
Query: 197 RMGGAGILLSNK--KEDRQRAKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFTG-----V 249
+ ++LSN + + A Y+L LG ++ EHD G V
Sbjct: 202 SDCASAVILSNGIGEAPGKPAIYDL-------LGWENRVIP--DSEHDLGGDVDPMGWKV 252
Query: 250 SLSRSILQVAGEALKANMATLAAMVLPYSELVWYAVSVTWKKIWPPGRKRGPYIPDFRKA 309
LS + +A +L+ A L +S ++ P + P DF
Sbjct: 253 VLSPRVPVLAKASLQPTYADL--------------LSSLQDQL--PSSYQKPA--DF--- 291
Query: 310 FEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAK--GK 367
+ +H GG ++ + + L + AS GN+SS++++ L+ L K
Sbjct: 292 --DWAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 349
Query: 368 VKKGDKIWQLAFGSGFKCNSAVWKCISNLR 397
+ G K+ + G F V C+ R
Sbjct: 350 LAPGGKVKEYVVGCAFGPGINVEMCMLKRR 379
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 109 ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSL 168
+++ S + A + N G++ R F + C A +I LAKD L + N
Sbjct: 73 VIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEK 132
Query: 169 ALVLSMES 176
LV++ ++
Sbjct: 133 VLVIATDT 140
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 109 ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSL 168
+++ S + A + N G++ R F + C A +I LAKD L + N
Sbjct: 73 VIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEK 132
Query: 169 ALVLSMES 176
LV++ ++
Sbjct: 133 VLVIATDT 140
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 155 SLAKDLLRVQKNSLALVLSMESVSSNGYQGKVKYMQLANCLFRMGGAGILLSNKKEDRQR 214
+L KD + ++ + S+E+V NG G +K + L GG + +K E
Sbjct: 21 ALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIE-----GGETKYVLHKIEAVDE 75
Query: 215 AKYELQHLVRTHLGSKDTAYKCVFQEHDDEGFTGVSLSRSILQV 258
A + + +G DT K F+ EG G S+ + +++
Sbjct: 76 ANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 25/113 (22%)
Query: 292 IWPPGRKRGPYIPDFRKA---------------------FEHFCVHAGGKAVIDAIKENL 330
+WP R+ GP + FR A F H +ID + L
Sbjct: 232 LWPTLRQDGPSV--FRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRIIDEFAKQL 289
Query: 331 KLKDRDVEASKTTLYRFGNTSSSSVWYELSYLEAKGKVKKGDKIWQLAFGSGF 383
KL + V A + GNTS++S+ + L + G Q+ FG+G
Sbjct: 290 KLPESVVVARD--IADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGL 340
>pdb|1TE4|A Chain A, Solution Structure Of Mth187. Ontario Centre For
Structural Proteomics Target Mth0187_1_111; Northeast
Structural Genomics Target Tt740
Length = 131
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 242 DDEGFTGVSLSRSILQVAGEALKANMATLA 271
DD GF +RS+ Q+ GE ++A M LA
Sbjct: 84 DDSGFVRSGAARSLEQIGGERVRAAMEKLA 113
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 304 PDFRKAFEHFCVHAGGKAVIDAIKENLKLKDRDVEASKTTLY 345
D RKA E+ V A +A I+++ ENLK D+ E +Y
Sbjct: 11 SDNRKAVENLQVFAEQQAFIESMAENLKESDQFPEWESAGIY 52
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 109 ILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLLRVQKNSL 168
+++ S + A + N G++ R F + C A +I LAKD L + N
Sbjct: 74 VIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMK-EACYAATPAIQLAKDYLATRPNEK 132
Query: 169 ALVLSMES 176
LV++ ++
Sbjct: 133 VLVIATDT 140
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 102 INPKSIDILITNCSVSCPTPSVAAMVINKFGLKSNVRSFHLSGMGCSAGILSISLAKDLL 161
++ +D LIT+ S + P + + N+ L+ + + C AG S++LA DL+
Sbjct: 154 LDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALAADLV 213
Query: 162 RVQKNSLALVLSMESVSSNGYQ 183
+ + LV+ E++S+ YQ
Sbjct: 214 AADPDRVVLVVISEALSTT-YQ 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,465,250
Number of Sequences: 62578
Number of extensions: 496309
Number of successful extensions: 1367
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 104
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)