Query         014607
Match_columns 421
No_of_seqs    329 out of 2011
Neff          7.2 
Searched_HMMs 29240
Date          Mon Mar 25 14:36:59 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014607hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3qn1_B Protein phosphatase 2C  100.0 3.3E-51 1.1E-55  408.6  26.2  220   66-286     8-276 (337)
  2 3kdj_B Protein phosphatase 2C  100.0 2.2E-50 7.5E-55  399.0  28.1  216   71-287     9-248 (316)
  3 2p8e_A PPM1B beta isoform vari 100.0 2.1E-50   7E-55  397.7  24.1  250   68-415    21-298 (307)
  4 2i0o_A Ser/Thr phosphatase; be 100.0   6E-50 2.1E-54  393.8  25.8  213   69-286    21-262 (304)
  5 2iq1_A Protein phosphatase 2C  100.0 1.4E-48 4.9E-53  378.4  27.8  246   69-416     6-263 (274)
  6 3d8k_A PP2C, protein phosphata 100.0 8.2E-50 2.8E-54  404.0  19.6  251   69-417    11-326 (377)
  7 1a6q_A Phosphatase 2C; catalyt 100.0 1.2E-48 3.9E-53  396.4  24.7  251   68-416    19-293 (382)
  8 2i44_A Serine-threonine phosph 100.0 4.3E-48 1.5E-52  383.4  25.1  254   69-416    20-322 (324)
  9 2isn_A NYSGXRC-8828Z, phosphat 100.0 1.4E-47 4.9E-52  386.1  26.4  248   70-416    12-334 (364)
 10 4da1_A Protein phosphatase 1K, 100.0 5.6E-47 1.9E-51  385.0  27.4  246   71-418   122-379 (389)
 11 2irm_A Mitogen-activated prote 100.0 1.2E-47 4.1E-52  385.9  18.6  203   76-286    25-304 (358)
 12 2j4o_A Mitogen-activated prote 100.0 1.1E-47 3.7E-52  391.7  16.7  214   69-286    25-316 (401)
 13 2pnq_A [pyruvate dehydrogenase 100.0 9.2E-46 3.1E-50  383.7  25.4  215   73-289    39-368 (467)
 14 2pk0_A Serine/threonine protei 100.0 4.5E-42 1.5E-46  327.1  19.0  233   70-416     5-247 (250)
 15 1txo_A Putative bacterial enzy 100.0 1.4E-41 4.8E-46  321.2  19.0  225   71-416     5-237 (237)
 16 2j82_A TPPHA, protein serine-t 100.0 1.1E-40 3.8E-45  315.4  22.4  196   71-284     1-209 (240)
 17 2jfr_A Ser-Thr phosphatase MSP 100.0 4.6E-40 1.6E-44  310.2  16.8  189   71-285     6-202 (234)
 18 3rnr_A Stage II sporulation E  100.0 2.2E-36 7.6E-41  282.0  10.5  165   99-285     8-182 (211)
 19 3t91_A Stage II sporulation pr  99.8 1.8E-19 6.3E-24  170.2  17.8  166   71-284     8-182 (242)
 20 3pu9_A Protein serine/threonin  99.8 1.1E-17 3.8E-22  158.6  23.8  157   72-276    12-172 (242)
 21 3f79_A Probable two-component   99.7 9.4E-17 3.2E-21  152.9  20.5  168   67-278    34-207 (255)
 22 3zt9_A Serine phosphatase; hyd  99.7 1.2E-15 4.2E-20  139.7  20.4  156   70-279     3-161 (193)
 23 3ke6_A Protein RV1364C/MT1410;  99.2 6.5E-09 2.2E-13  105.3  26.7  158   69-276    34-196 (399)
 24 3eq2_A Probable two-component   98.4 5.7E-06   2E-10   82.8  16.8  161   67-276   173-344 (394)
 25 3c4z_A Rhodopsin kinase; Ser/T  22.6     4.9 0.00017   41.7  -4.3   25  386-410   102-126 (543)

No 1  
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=100.00  E-value=3.3e-51  Score=408.61  Aligned_cols=220  Identities=39%  Similarity=0.590  Sum_probs=194.5

Q ss_pred             eeecCc-eEEEEeccCCCCCCcceeEEeeccCC------------------CCCceEEEEEeCCCcchHHHHHHHHHHHH
Q 014607           66 VSFSGI-GVAVSSLKGKKKFMEDTHKIISCLHG------------------NSNKSFFGVYDGHGGKMAAEFVAENLHTN  126 (421)
Q Consensus        66 ~~~~~~-~~g~~s~~G~R~~nED~~~v~~~~~~------------------~~~~~lfgV~DGhGG~~~a~~as~~l~~~  126 (421)
                      +++..+ .||+++++|+|..|||++.+..++..                  ..+..||||||||||+.+|++|++.++..
T Consensus         8 ~~~~~~~~~G~~s~~G~R~~nEDa~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~~~~~   87 (337)
T 3qn1_B            8 YELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFA   87 (337)
T ss_dssp             ---CCSCCEEEEEECTTSSSCCEEEEEEEEEEEEEGGGTC----------CEEEEEEEEEEEEESSSHHHHHHHHHHHHH
T ss_pred             hhhcccCceEEEEeeeCCchhhhHHHHHhhhhcccchhcccccccccccccCCCeEEEEEEeCCCChhHHHHHHHHHHHH
Confidence            334444 48999999999999999999765321                  11567999999999999999999999999


Q ss_pred             HHHHHhhCC-------------CCHHHHHHHHHHHHhHHHHhcC-----------------CCCCCcEEEEEEeCCeEEE
Q 014607          127 IFEMMKNCT-------------GDKEEAVKAGYLKTDEEFSKQG-----------------LVSGACCVTAFIEGHDVVV  176 (421)
Q Consensus       127 l~~~~~~~~-------------~~~~~~l~~a~~~~~~~~~~~~-----------------~~~GtT~v~~li~~~~l~v  176 (421)
                      |.+.+....             ..+..+|+++|..+|+.+....                 ..+|||++++++.++++||
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~  167 (337)
T 3qn1_B           88 LAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVV  167 (337)
T ss_dssp             HHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSCBCCCSSCTTCEECEEEEEECSSEEEE
T ss_pred             HHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhhhccccccccccccccccCCCCceEEEEEEECCEEEE
Confidence            998876532             2367899999999999998654                 3589999999999999999


Q ss_pred             EecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceecccccccccccccCceEEEEe
Q 014607          177 SNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNF  256 (421)
Q Consensus       177 anvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l  256 (421)
                      +||||||+|++|+|++++||+||++.++.|+.||...+|.+....+ +|++|.+++||+||+..+|+.++++|++..+.+
T Consensus       168 anvGDSR~~l~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~v~~~~~-~r~~g~l~~sRalGd~~~~~~v~~~pdv~~~~~  246 (337)
T 3qn1_B          168 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQG-ARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPR  246 (337)
T ss_dssp             EEESSCEEEEEETTEEEESCCCCCTTSHHHHHHHHHTTCCEEESSS-EEETTTBSCSBCEECGGGTTTSBCCCEEEEEEC
T ss_pred             EeccCcEEEEEeCCEeeeecCCCCCCCHHHHHHHHHcCCeEEecCC-ceecCccccccccccccccCCCCCcceEEEEEe
Confidence            9999999999999999999999999999999999999999987655 599999999999999999999999999999999


Q ss_pred             cCCCeEEEEEccCCCCCCCHHHHHHHHHHH
Q 014607          257 SSDMEFLVLASDGFWDEVGNQEAVDIVKRL  286 (421)
Q Consensus       257 ~~~dd~lvLaSDGlwD~ls~~ei~~iv~~~  286 (421)
                      .+.++|||||||||||+|+++||+++++..
T Consensus       247 ~~~~d~llL~SDGl~d~l~~~ei~~~~~~~  276 (337)
T 3qn1_B          247 SREDECLILASDGLWDVMNNQEVCEIARRR  276 (337)
T ss_dssp             CTTEEEEEEECHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCcccCCCHHHHHHHHHHH
Confidence            777799999999999999999999999874


No 2  
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=100.00  E-value=2.2e-50  Score=399.04  Aligned_cols=216  Identities=36%  Similarity=0.576  Sum_probs=192.2

Q ss_pred             ceEEEEeccCCCCCCcceeEEeeccCC-------------CCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCC-
Q 014607           71 IGVAVSSLKGKKKFMEDTHKIISCLHG-------------NSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTG-  136 (421)
Q Consensus        71 ~~~g~~s~~G~R~~nED~~~v~~~~~~-------------~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~-  136 (421)
                      +.||+++++|+|+.|||++.+..++..             ..+..||+|||||||+.++++|++.+++.|.+.+..... 
T Consensus         9 ~~~g~~s~~G~R~~nEDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~~~~as~~~~~~l~~~~~~~~~~   88 (316)
T 3kdj_B            9 PLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPM   88 (316)
T ss_dssp             -CEEEEEECTTSSSCCEEEEEETTCC-----------CCGGGGCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEeEeCCCCCccceeeecccccccccccccccccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            568999999999999999998765422             236789999999999999999999999999887754322 


Q ss_pred             ---------CHHHHHHHHHHHHhHHHHhcC-CCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHH
Q 014607          137 ---------DKEEAVKAGYLKTDEEFSKQG-LVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDE  206 (421)
Q Consensus       137 ---------~~~~~l~~a~~~~~~~~~~~~-~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E  206 (421)
                               .+..+|+++|..+++.+.... ..+|||++++++.++++|++||||||+|++|+|++.+||+||++.++.|
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSR~yl~r~g~~~~lT~DH~~~~~~e  168 (316)
T 3kdj_B           89 LSDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDE  168 (316)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHGGGTSCTTCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEESCCCCCTTSHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEECCEEEEEEccCCEEEEEECCEecccCCCCCCCCHHH
Confidence                     267889999999999886643 4689999999999999999999999999999999999999999999999


Q ss_pred             HhhHHhcCCeeeecCCceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHH
Q 014607          207 RKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKRL  286 (421)
Q Consensus       207 ~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~~  286 (421)
                      +.||...+|.+....+ +|++|.|++||+||+..+|+.++++|++..+.+.+.++|||||||||||+|+++||+++++..
T Consensus       169 ~~ri~~~~g~v~~~~~-~r~~g~l~~sRalGd~~~~~~~~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~  247 (316)
T 3kdj_B          169 AARIEAAGGKVIQWNG-ARVFGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKR  247 (316)
T ss_dssp             HHHHHHTTCCEEESSS-EEETTTBSCSBCEECGGGTTTSBCCCEEEEEECCTTEEEEEEECHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEecCC-ceEcceeccccccCccccCCCcCCCCceEEEEecCCCCEEEEEccCcccCCCHHHHHHHHHHH
Confidence            9999999999987655 599999999999999999999999999999995555699999999999999999999999874


Q ss_pred             H
Q 014607          287 L  287 (421)
Q Consensus       287 ~  287 (421)
                      +
T Consensus       248 ~  248 (316)
T 3kdj_B          248 I  248 (316)
T ss_dssp             H
T ss_pred             h
Confidence            3


No 3  
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=100.00  E-value=2.1e-50  Score=397.71  Aligned_cols=250  Identities=32%  Similarity=0.519  Sum_probs=216.9

Q ss_pred             ecCceEEEEeccCCCCCCcceeEEeeccCC-CCCceEEEEEeCCCcchHHHHHHHHHHHHHHHH--HhhC----------
Q 014607           68 FSGIGVAVSSLKGKKKFMEDTHKIISCLHG-NSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEM--MKNC----------  134 (421)
Q Consensus        68 ~~~~~~g~~s~~G~R~~nED~~~v~~~~~~-~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~--~~~~----------  134 (421)
                      ...+.||+++++|+|..|||++++...+.+ ..+..||+|||||||+.+|++|++.+++.|.+.  +...          
T Consensus        21 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~  100 (307)
T 2p8e_A           21 GNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELS  100 (307)
T ss_dssp             ETTEEEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------C
T ss_pred             CCCeeEEEEecCCCCCcccceEEEEecCCCCCCCeEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhccccccccccc
Confidence            357889999999999999999998765432 235679999999999999999999999998752  2211          


Q ss_pred             CCCHHHHHHHHHHHHhHHHHhcC------CCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHh
Q 014607          135 TGDKEEAVKAGYLKTDEEFSKQG------LVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERK  208 (421)
Q Consensus       135 ~~~~~~~l~~a~~~~~~~~~~~~------~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~  208 (421)
                      ..++.++|+++|..+|+.+.+..      ..+|||++++++.++++|||||||||+|++|+|++.+||+||++.++.|++
T Consensus       101 ~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~~  180 (307)
T 2p8e_A          101 VENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKE  180 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECCccccCCCCCCCCCHHHHH
Confidence            11357899999999999998642      458999999999999999999999999999999999999999999999999


Q ss_pred             hHHhcCCeeeecCCceeecCccccceecccccccc---------cccccCceEEEEecCCCeEEEEEccCCCCCCCHHHH
Q 014607          209 RIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKN---------WVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEA  279 (421)
Q Consensus       209 rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~---------~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei  279 (421)
                      ||...||.+..    +|++|.|++||+||+..+|.         .++++|++..+++.++|+|||||||||||+|+++|+
T Consensus       181 rI~~~gg~v~~----~rv~g~l~ltRalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei  256 (307)
T 2p8e_A          181 RIQNAGGSVMI----QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEEL  256 (307)
T ss_dssp             HHHHTTCCEET----TEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHH
T ss_pred             HHHHcCCEEEe----CcccCeEeccccccCHHHhcCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCcccCCCHHHH
Confidence            99999998874    49999999999999998874         468999999999999867999999999999999999


Q ss_pred             HHHHHHHHhccccCccCCCCCCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchh
Q 014607          280 VDIVKRLLAGKAIGTLGDFSKDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRIS  359 (421)
Q Consensus       280 ~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (421)
                      +++++..+..                                                                      
T Consensus       257 ~~~v~~~~~~----------------------------------------------------------------------  266 (307)
T 2p8e_A          257 CEYVKSRLEV----------------------------------------------------------------------  266 (307)
T ss_dssp             HHHHHHHHTT----------------------------------------------------------------------
T ss_pred             HHHHHHHHhc----------------------------------------------------------------------
Confidence            9999873211                                                                      


Q ss_pred             eeecccccccccccccccCCCCCCCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcC
Q 014607          360 IIKRINVKTESSSQENTDYKKSPASSGLMAACKELANLAMSRGSLDDITVMIIDLN  415 (421)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~  415 (421)
                                              ..+++++|++|++.|+++|+.||||||||++.
T Consensus       267 ------------------------~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~  298 (307)
T 2p8e_A          267 ------------------------SDDLENVCNWVVDTCLHKGSRDNMSIVLVCFS  298 (307)
T ss_dssp             ------------------------CCCHHHHHHHHHHHHHHTTCCSCEEEEEEEC-
T ss_pred             ------------------------CCCHHHHHHHHHHHHHHcCCCCCeEEEEEECC
Confidence                                    12678899999999999999999999999985


No 4  
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=100.00  E-value=6e-50  Score=393.75  Aligned_cols=213  Identities=35%  Similarity=0.540  Sum_probs=189.9

Q ss_pred             cCceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 014607           69 SGIGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLK  148 (421)
Q Consensus        69 ~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~  148 (421)
                      ..+.||+++++|+|..|||++++..++.  .+..||+|||||||+.+|++|++.+++.|.+.......++.++|+++|..
T Consensus        21 ~~~~~~~~s~~G~R~~nED~~~~~~~~~--~~~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~a~~~   98 (304)
T 2i0o_A           21 EFLASGSSSMQGWRISQEDAHNCILNFD--DQCSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLG   98 (304)
T ss_dssp             SSEEEEEEEEEESSSCCCEEEEEEEEEE--TTEEEEEEEECSSCSHHHHHHHHHHHHHHHHSHHHHTTCHHHHHHHHHHH
T ss_pred             CceEEEEeecCCCCCCccCEEEEEeccC--CCeEEEEEEcCCCCHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHH
Confidence            4678999999999999999998865442  46789999999999999999999999998876443346688999999999


Q ss_pred             HhHHHHhc--------------------CCCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHh
Q 014607          149 TDEEFSKQ--------------------GLVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERK  208 (421)
Q Consensus       149 ~~~~~~~~--------------------~~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~  208 (421)
                      +|+.+.+.                    ...+|||++++++.++++|||||||||+|++|+|++++||+||++.++.|+.
T Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~e~~  178 (304)
T 2i0o_A           99 FDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMSFDHKPEDTVEYQ  178 (304)
T ss_dssp             HHHHTTSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHH
T ss_pred             HHHHHHhhhhHHHHhhhccccccccccCCCCCCccEEEEEEECCEEEEEEccCcEEEEEECCEEEEcCCCcCCcCHHHHH
Confidence            99987532                    3458999999999999999999999999999999999999999999999999


Q ss_pred             hHHhcCCeeeecCCceeecCccccceecccccccc---------cccccCceEEEEecCCCeEEEEEccCCCCCCCHHHH
Q 014607          209 RIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKN---------WVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEA  279 (421)
Q Consensus       209 rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~---------~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei  279 (421)
                      ||...||.+...   +|++|.+++||+||+..+|.         .++++|++..+++.++|.|||||||||||+|+++|+
T Consensus       179 rI~~~gg~v~~~---~rv~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei  255 (304)
T 2i0o_A          179 RIEKAGGRVTLD---GRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQV  255 (304)
T ss_dssp             HHHHTTCCBCTT---SCBTTSCSCSBCEECGGGCCCTTSCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHH
T ss_pred             HHHhCCCEEEeC---CeEcCceeccccccCHHHccCccCCccCCeEEeeCeEEEEEcCCCCeEEEEECcCccccCCHHHH
Confidence            999999998743   48999999999999998874         468999999999999977899999999999999999


Q ss_pred             HHHHHHH
Q 014607          280 VDIVKRL  286 (421)
Q Consensus       280 ~~iv~~~  286 (421)
                      +++++..
T Consensus       256 ~~~v~~~  262 (304)
T 2i0o_A          256 VQFVQER  262 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874


No 5  
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=100.00  E-value=1.4e-48  Score=378.36  Aligned_cols=246  Identities=34%  Similarity=0.551  Sum_probs=217.4

Q ss_pred             cCceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 014607           69 SGIGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLK  148 (421)
Q Consensus        69 ~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~  148 (421)
                      .-..+|+++.+|+|+.|||++++...   .++..||+|||||||+.+|++|++.+.+.|.+.+.. ..++.++|+++|..
T Consensus         6 ~~~~~g~~s~~G~R~~nED~~~~~~~---~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~-~~~~~~~l~~a~~~   81 (274)
T 2iq1_A            6 SLENVGCASQIGKRKENEDRFDFAQL---TDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPK-EKNLETLLTLAFLE   81 (274)
T ss_dssp             CGGGCEEEEECCSSSSCCEEEEEEEC---SSSEEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTT-CCCHHHHHHHHHHH
T ss_pred             cCCeEEEEecccCCCCccceEEEeeC---CCCeEEEEEECCCCCHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence            34568999999999999999988642   356789999999999999999999999998876654 46689999999999


Q ss_pred             HhHHHHhc--------CCCCCCcEEEEEEeC-CeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeee
Q 014607          149 TDEEFSKQ--------GLVSGACCVTAFIEG-HDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEF  219 (421)
Q Consensus       149 ~~~~~~~~--------~~~~GtT~v~~li~~-~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~  219 (421)
                      +++.+.+.        ...+|||++++++.+ .++|++||||||+|++|+|++.+||+||++..+.|+.||+..+|.+..
T Consensus        82 ~~~~i~~~~~~~~~~~~~~~GtT~~~~~i~~~~~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~E~~Ri~~~gG~v~~  161 (274)
T 2iq1_A           82 IDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAW  161 (274)
T ss_dssp             HHHHHHHHHHC---CCGGGCEECEEEEEEETTTEEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHhhhccccCCCCCCCcEEEEEEECCCEEEEEEecCceEEEEeCCEeeECCCCCCCcCHHHHHHHHHcCCEEEc
Confidence            99988753        245899999999975 699999999999999999999999999999999999999999999886


Q ss_pred             cC-CceeecCccccceecccccccc-cccccCceEEEEecCC-CeEEEEEccCCCCCCCHHHHHHHHHHHHhccccCccC
Q 014607          220 HR-GAWRVHGILAVSRSIGNAHLKN-WVLAEPDTKILNFSSD-MEFLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLG  296 (421)
Q Consensus       220 ~~-g~~rv~g~l~vtRalGd~~~k~-~v~~~Pdi~~~~l~~~-dd~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~  296 (421)
                      .. +.+|++|.+++||+||+..+|+ .++++|++..+++.++ ++|||||||||||+|+++|+++++..           
T Consensus       162 ~~~~~~~~~~~~~ltralGd~~~k~~~v~~~pdi~~~~l~~g~d~~lll~SDGl~d~l~~~ei~~~~~~-----------  230 (274)
T 2iq1_A          162 NSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQ-----------  230 (274)
T ss_dssp             CTTSCEEETTTBSCSBCEECGGGTTTTCBCCCEEEEEECCTTTEEEEEEECHHHHTTCCHHHHHHHHHT-----------
T ss_pred             CCCCceeECCeEeeccccCChhhccCCEEeCCEEEEEEeCCCCCcEEEEEccCcccCCCHHHHHHHHHH-----------
Confidence            43 4568899999999999999887 4789999999999985 56999999999999999999999875           


Q ss_pred             CCCCCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccc
Q 014607          297 DFSKDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENT  376 (421)
Q Consensus       297 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (421)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (274)
T 2iq1_A          231 --------------------------------------------------------------------------------  230 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcCc
Q 014607          377 DYKKSPASSGLMAACKELANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       377 ~~~~~~~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~~  416 (421)
                             ..+|+++|++|++.|+++|+.||||||||++..
T Consensus       231 -------~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~  263 (274)
T 2iq1_A          231 -------CHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA  263 (274)
T ss_dssp             -------SSSHHHHHHHHHHHHHHTTCCSCEEEEEEECTT
T ss_pred             -------cCCHHHHHHHHHHHHHHcCCCCCeEEEEEEccC
Confidence                   116788999999999999999999999999964


No 6  
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=100.00  E-value=8.2e-50  Score=404.03  Aligned_cols=251  Identities=20%  Similarity=0.339  Sum_probs=217.9

Q ss_pred             cCceEEEEeccCCCCCCcc-----eeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 014607           69 SGIGVAVSSLKGKKKFMED-----THKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVK  143 (421)
Q Consensus        69 ~~~~~g~~s~~G~R~~nED-----~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~  143 (421)
                      ..+.||.++++|+|+.|||     ++++...+.+..+..||||||||||+.+|++|++++++.|.+.    ...+.++|+
T Consensus        11 ~~~~~~~~s~~G~R~~~ED~~neD~~~~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~----~~~~~~al~   86 (377)
T 3d8k_A           11 GRTVCASATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDL----RDVNEEEIT   86 (377)
T ss_dssp             HHHHHHHTTTCEEEEEECC---CEEEEEEEECSSCTTEEEEEEEEBSSSSHHHHHHHHHHHHHHTTC----SSSSHHHHH
T ss_pred             CcEEEEEEEccCCCCccccchhcceEEEecccCCCCCeEEEEEEcCCCcHHHHHHHHHHHHHHHHHh----cccHHHHHH
Confidence            4466788999999998755     5555444545677889999999999999999999999988542    234578999


Q ss_pred             HHHHHHhHHHHhcCCCCCCcEEEEEEe---------------------------------------------------CC
Q 014607          144 AGYLKTDEEFSKQGLVSGACCVTAFIE---------------------------------------------------GH  172 (421)
Q Consensus       144 ~a~~~~~~~~~~~~~~~GtT~v~~li~---------------------------------------------------~~  172 (421)
                      ++|.++|+.+.+....+|||++++++.                                                   ++
T Consensus        87 ~af~~~d~~l~~~~~~~GtTa~~~~i~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~~~  166 (377)
T 3d8k_A           87 RQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKGIY  166 (377)
T ss_dssp             HHHHHHHHHHHHHTCCCCBCEEEEEEEEESSCCCEEEETTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTCEE
T ss_pred             HHHHHHHHHHHhcccCCCCceEEEEEeccccccccccccccccccccccccccccccccccccceeeecccccccccCCC
Confidence            999999999999888899999998884                                                   14


Q ss_pred             eEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceeccccccc---------c
Q 014607          173 DVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLK---------N  243 (421)
Q Consensus       173 ~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k---------~  243 (421)
                      +||||||||||+|++|+|++.+||+||++.++.|+.||..+||.+...+++||++|.|++||||||..+|         +
T Consensus       167 ~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~g~~rv~G~l~vtRalGd~~~k~~~~~~~~~~  246 (377)
T 3d8k_A          167 TIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQD  246 (377)
T ss_dssp             EEEEEEESSCEEEEEETTEEEESSCCCSSSSHHHHHHHHTTTCCEEECSSSEEETTTBSCSBCSSCGGGSCC---CCSSC
T ss_pred             eEEEEEcccceEEEEECCEEEECCcCCCCCCHHHHHHHHHcCCEEEecCCcEEEcCceecceeecChhhhcccccccccC
Confidence            8999999999999999999999999999999999999999999998778999999999999999999988         4


Q ss_pred             cccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHHHhccccCccCCCCCCCCCCCccccCCCCcchhhhhhh
Q 014607          244 WVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLGDFSKDDDEDYGCVNVSPSSKIRRVSLV  323 (421)
Q Consensus       244 ~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  323 (421)
                      .++++|++..++|+++ |+||||||||||+|+++|+++++......                                  
T Consensus       247 ~v~~~Pdv~~~~l~~~-D~llL~SDGl~d~ls~~e~v~~v~~~~~~----------------------------------  291 (377)
T 3d8k_A          247 LVSAVPDVTTFFAYPG-DDIVAGTAGAFAHFRSHAAIAAAIALYPV----------------------------------  291 (377)
T ss_dssp             SSBCCCEEEEEEECTT-CEEEEECGGGGCSCSSHHHHHHHHTTSCC----------------------------------
T ss_pred             ccccCCcEEEEEcCCC-CEEEEEECCcccCCCcHHHHHHHHHHhhc----------------------------------
Confidence            6889999999999998 79999999999999999998866541000                                  


Q ss_pred             hhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccccCCCCCCCchHHHHHHHHHHHHHhcCC
Q 014607          324 KQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENTDYKKSPASSGLMAACKELANLAMSRGS  403 (421)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lv~~a~~~G~  403 (421)
                                                                                 ...+++++|++|++.|+.+|+
T Consensus       292 -----------------------------------------------------------~~~~~~~~a~~Lv~~A~~~g~  312 (377)
T 3d8k_A          292 -----------------------------------------------------------SPETVLDAAKAMVVNAKRRKV  312 (377)
T ss_dssp             -----------------------------------------------------------CGGGHHHHHHHHHHTTTTSSC
T ss_pred             -----------------------------------------------------------cCCCHHHHHHHHHHHHHhcCC
Confidence                                                                       012788899999999999999


Q ss_pred             CCCcEEEEEEcCce
Q 014607          404 LDDITVMIIDLNRF  417 (421)
Q Consensus       404 ~DnITv~vv~l~~~  417 (421)
                      .||||||||+|...
T Consensus       313 ~DNiTvivv~~~~~  326 (377)
T 3d8k_A          313 TKNISTFVRHLPES  326 (377)
T ss_dssp             CSCCCEEEEECCSS
T ss_pred             CCCEEEEEEEecCC
Confidence            99999999999754


No 7  
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=100.00  E-value=1.2e-48  Score=396.36  Aligned_cols=251  Identities=34%  Similarity=0.561  Sum_probs=218.4

Q ss_pred             ecCceEEEEeccCCCCCCcceeEEeeccCC-CCCceEEEEEeCCCcchHHHHHHHHHHHHHHH--HHhhC-----CCCHH
Q 014607           68 FSGIGVAVSSLKGKKKFMEDTHKIISCLHG-NSNKSFFGVYDGHGGKMAAEFVAENLHTNIFE--MMKNC-----TGDKE  139 (421)
Q Consensus        68 ~~~~~~g~~s~~G~R~~nED~~~v~~~~~~-~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~--~~~~~-----~~~~~  139 (421)
                      -..+.||+++++|+|..|||++++...+.+ ..+..||+|||||||+.+|++|++.+++.|.+  .+...     ...+.
T Consensus        19 ~~~l~~g~~s~~G~R~~nEDa~~~~~~~~~~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~~~   98 (382)
T 1a6q_A           19 GNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVK   98 (382)
T ss_dssp             ETTEEEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHH
T ss_pred             CCceEEEEEecCCCCCCCCceeEEecCCCCCCCCeEEEEEEcCCCcHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHH
Confidence            357899999999999999999998765432 13567999999999999999999999999874  23321     12367


Q ss_pred             HHHHHHHHHHhHHHHhc------CCCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhc
Q 014607          140 EAVKAGYLKTDEEFSKQ------GLVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENK  213 (421)
Q Consensus       140 ~~l~~a~~~~~~~~~~~------~~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~  213 (421)
                      ++|+++|..+|+.+.+.      ...+|||++++++.++++|||||||||+|++|+|++.+||+||++.++.|++||...
T Consensus        99 ~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~RI~~~  178 (382)
T 1a6q_A           99 NGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNA  178 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCcceEEEEEEECCeEEEEEcCCCeEEEEECCceEEeCCCCCCCCHHHHHHHHhc
Confidence            89999999999988753      245899999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeecCCceeecCccccceecccccccc---------cccccCceEEEEec-CCCeEEEEEccCCCCCCCHHHHHHHH
Q 014607          214 GGYVEFHRGAWRVHGILAVSRSIGNAHLKN---------WVLAEPDTKILNFS-SDMEFLVLASDGFWDEVGNQEAVDIV  283 (421)
Q Consensus       214 gg~v~~~~g~~rv~g~l~vtRalGd~~~k~---------~v~~~Pdi~~~~l~-~~dd~lvLaSDGlwD~ls~~ei~~iv  283 (421)
                      ||.+..    +|++|.|++||+||++.+|.         .++++|++..+++. ++++|||||||||||+|+++|+++++
T Consensus       179 gg~v~~----~Rv~g~l~ltRalGd~~~K~~~~~~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v  254 (382)
T 1a6q_A          179 GGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV  254 (382)
T ss_dssp             TCCEET----TEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHH
T ss_pred             CcEEec----ccccCceeeeeecCcHhhcccccCCCccCeeeeeeeEEEEEccCCCCeEEEEeccCccCCCChHHHHHHH
Confidence            999875    49999999999999998873         46899999999999 77789999999999999999999999


Q ss_pred             HHHHhccccCccCCCCCCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeec
Q 014607          284 KRLLAGKAIGTLGDFSKDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKR  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      +..+..                                                                          
T Consensus       255 ~~~~~~--------------------------------------------------------------------------  260 (382)
T 1a6q_A          255 RSRLEV--------------------------------------------------------------------------  260 (382)
T ss_dssp             HHHHTT--------------------------------------------------------------------------
T ss_pred             HHHHhc--------------------------------------------------------------------------
Confidence            873210                                                                          


Q ss_pred             ccccccccccccccCCCCCCCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcCc
Q 014607          364 INVKTESSSQENTDYKKSPASSGLMAACKELANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~~  416 (421)
                                          ..+++++|++|++.|+.+|+.||||||||++..
T Consensus       261 --------------------~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~  293 (382)
T 1a6q_A          261 --------------------TDDLEKVCNEVVDTCLYKGSRDNMSVILICFPN  293 (382)
T ss_dssp             --------------------CCCHHHHHHHHHHHHHHTTCCSCEEEEEEECTT
T ss_pred             --------------------CCCHHHHHHHHHHHHHhcCCcCCEEEEEEEecC
Confidence                                126788999999999999999999999999864


No 8  
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=100.00  E-value=4.3e-48  Score=383.39  Aligned_cols=254  Identities=26%  Similarity=0.385  Sum_probs=211.2

Q ss_pred             cCceEEEEeccCCCCCCcceeEEeeccC-CCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHH--Hhh-------C----
Q 014607           69 SGIGVAVSSLKGKKKFMEDTHKIISCLH-GNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEM--MKN-------C----  134 (421)
Q Consensus        69 ~~~~~g~~s~~G~R~~nED~~~v~~~~~-~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~--~~~-------~----  134 (421)
                      ..+.+|+++++|+|+.|||++++..+.. +..+..||+|||||||+.+|++|++++++.|.+.  +..       .    
T Consensus        20 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~   99 (324)
T 2i44_A           20 PAFDAAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTVGDFASENVKDLVVPQLISSPAWQEVTEMLRSDVPAT   99 (324)
T ss_dssp             TTEEEEEEEECTTSSSCCEEEEEESCCSTTCSSEEEEEEEEEESSSHHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCCHH
T ss_pred             cceEEEEEECCCCCCccCCeEEEEecCCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCcc
Confidence            4578999999999999999998875432 3456789999999999999999999999998762  221       0    


Q ss_pred             ------CCCHHHHHHHHHHHHhHHHHhc-----CCCCCCcEEEEEEeCCeEEEEecCCcEEEEEeC---C-eeeecCCCC
Q 014607          135 ------TGDKEEAVKAGYLKTDEEFSKQ-----GLVSGACCVTAFIEGHDVVVSNLGDCRAVLCRG---G-VAEALTNDH  199 (421)
Q Consensus       135 ------~~~~~~~l~~a~~~~~~~~~~~-----~~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~---g-~~~~LT~DH  199 (421)
                            ..++.++|+++|..+|+.+.+.     ....|+|++++++.++++|||||||||+|++|+   | ++.+||+||
T Consensus       100 ~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~g~gtt~~~i~~~~l~vanvGDSRa~l~r~~~~g~~~~~LT~DH  179 (324)
T 2i44_A          100 EVDEKLPQLLDQAVDDMYKNADNELVKMCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPNGLNCEFLTVDH  179 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCEECEEEEEEETTEEEEEEESSCEEEEEEEETTEEEEEESCCCC
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEECCeEEEEEccCceEEEEeccCCCceEEECCCCC
Confidence                  1235788999999999998753     223455555566899999999999999999996   7 899999999


Q ss_pred             CCCChHHHhhHHhcCCeeee----cCCceeecCccccceeccc----cccc----------ccccccCceEEEEecCCCe
Q 014607          200 KAGREDERKRIENKGGYVEF----HRGAWRVHGILAVSRSIGN----AHLK----------NWVLAEPDTKILNFSSDME  261 (421)
Q Consensus       200 ~~~~~~E~~rI~~~gg~v~~----~~g~~rv~g~l~vtRalGd----~~~k----------~~v~~~Pdi~~~~l~~~dd  261 (421)
                      ++.++.|++||...||.+..    +.+.++..|.|+++|+||+    +.+|          ++++++|++..+++.++|+
T Consensus       180 ~~~~~~E~~Ri~~~Gg~v~~~~~~~~~~~~~~g~l~~sra~Gd~p~~~~~~~~~g~~~~~~~~v~~~pdv~~~~l~~~d~  259 (324)
T 2i44_A          180 KPDMPHEKLRIMRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHR  259 (324)
T ss_dssp             CTTSHHHHHHHHHTTCEEECCTTCTTSCEEECTTHHHHHHTTCCCCCBSSSBCEECGGGTTTTCBCCCEEEEEECCTTEE
T ss_pred             CCcCHHHHHHHHHcCCEEEecccccCCCccccCcccchhhcCCccccceeccccCCccccCCeEeecCEEEEEEcCCCCe
Confidence            99999999999999999953    3344578899999999999    5554          2468999999999999955


Q ss_pred             EEEEEccCCCCCCCHHHHHHHHHHHHhccccCccCCCCCCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccc
Q 014607          262 FLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLGDFSKDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISE  341 (421)
Q Consensus       262 ~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (421)
                      |||||||||||+|+++|+++++...+..                                                    
T Consensus       260 ~llLaSDGl~d~ls~~ei~~~v~~~~~~----------------------------------------------------  287 (324)
T 2i44_A          260 VMILATDGLWDVMSAAQAVEIAMQARQE----------------------------------------------------  287 (324)
T ss_dssp             EEEEECHHHHTTCCHHHHHHHHHHHHHT----------------------------------------------------
T ss_pred             EEEEEcCchhccCCHHHHHHHHHHHHhc----------------------------------------------------
Confidence            9999999999999999999999874211                                                    


Q ss_pred             cccccccCCCCCcccchheeecccccccccccccccCCCCCCCchHHH--HHHHHHHHHHhcCCCCCcEEEEEEcCc
Q 014607          342 DDFASELGSPSSKSRRISIIKRINVKTESSSQENTDYKKSPASSGLMA--ACKELANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~lv~~a~~~G~~DnITv~vv~l~~  416 (421)
                                                                ..++++  +|++|++.|+++|+.||||||||++++
T Consensus       288 ------------------------------------------~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~  322 (324)
T 2i44_A          288 ------------------------------------------GRNPAQALVEMTLAEQQSRNQSADNITAMTVFFKK  322 (324)
T ss_dssp             ------------------------------------------TCCHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEC-
T ss_pred             ------------------------------------------CCCHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeeC
Confidence                                                      116777  999999999999999999999999875


No 9  
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=100.00  E-value=1.4e-47  Score=386.06  Aligned_cols=248  Identities=27%  Similarity=0.402  Sum_probs=211.1

Q ss_pred             CceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 014607           70 GIGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKT  149 (421)
Q Consensus        70 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~  149 (421)
                      -+.++.++++|+|..|||++++..++.+.++..||+|||||||+.+|++|+++++..|.+.    .....+.|+++|..+
T Consensus        12 ~~~~~~~s~~G~R~~nED~~~v~~~~~~~~~~~lf~VfDGHGG~~as~~a~~~l~~~l~~~----~~~~~~~l~~a~~~~   87 (364)
T 2isn_A           12 YTTTVAATMLGRRPTDEDAILVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGKL----SEFTFAEVKKACLSL   87 (364)
T ss_dssp             TEEEEEEEECTTSSSCCEEEEEECC----CCEEEEEEEEEESCSHHHHHHHHHHHHHHTTC----SSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCCcCCCeeEEeccCCCCCCeEEEEEEECCCCHHHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHH
Confidence            3678999999999999999998876665678899999999999999999999999877532    223467899999999


Q ss_pred             hHHHHhc---CCCCCCcEEEEEEeC-------------------------------------------------------
Q 014607          150 DEEFSKQ---GLVSGACCVTAFIEG-------------------------------------------------------  171 (421)
Q Consensus       150 ~~~~~~~---~~~~GtT~v~~li~~-------------------------------------------------------  171 (421)
                      |+.+.+.   ...+|||++++++.+                                                       
T Consensus        88 d~~i~~~~~~~~~~GtT~v~~~i~~~~~p~~~~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (364)
T 2isn_A           88 DAEIIRKLGPKHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRVPDVQQKT  167 (364)
T ss_dssp             HHHHHHHHCSSSCCEECEEEEEEEECSSCEEEEEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCCCCCCEEEE
T ss_pred             HHHHHHhcccCCCCCcceehhhhhccccccccccccccccccccccchhhhhhhhhhhhhcccccccccccccccccccc
Confidence            9998653   246899999988852                                                       


Q ss_pred             -----CeEEEEecCCcEEEEE-eCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceeccccccc---
Q 014607          172 -----HDVVVSNLGDCRAVLC-RGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLK---  242 (421)
Q Consensus       172 -----~~l~vanvGDSRa~l~-r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k---  242 (421)
                           .++|||||||||+|++ |+|++.+||+||++.++.|+.||..+||.+... +.+|++|.|++|||||+..+|   
T Consensus       168 ~~~g~~~l~vanvGDSRayl~~r~g~~~~LT~DH~~~~~~e~~rI~~~gG~v~~~-~~~rv~g~l~ltRalGd~~~k~~~  246 (364)
T 2isn_A          168 IPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETF-DVPRVDGVLALSRAFGDSDFKMNP  246 (364)
T ss_dssp             ECTTCEEEEEEEESSCEEEEECTTSCEEECCCCCCTTSHHHHHHHHHTTCCEEES-SSEEETTTBSCSBCEECGGGSCCC
T ss_pred             cccCccEEEEEECccCEEEEEeeCCEEEEcCcCCCCCCHHHHHHHHHcCCeEecC-CCcccCCceeeEEEecchhhcccc
Confidence                 3899999999999999 689999999999999999999999999998764 567999999999999999887   


Q ss_pred             ------ccccccCceEEEEecCCCeEEEEEccCCCCCCC--HHHHHHHHHHHHhccccCccCCCCCCCCCCCccccCCCC
Q 014607          243 ------NWVLAEPDTKILNFSSDMEFLVLASDGFWDEVG--NQEAVDIVKRLLAGKAIGTLGDFSKDDDEDYGCVNVSPS  314 (421)
Q Consensus       243 ------~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls--~~ei~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~  314 (421)
                            +.++++|++..+++.++ ||||||||||||+++  ++++.+++...+..                         
T Consensus       247 ~l~~~~~~v~~~Pdv~~~~l~~~-D~llL~SDGl~d~l~~~~~~v~~~~~~~~~~-------------------------  300 (364)
T 2isn_A          247 NLPPEEQKVIAVPDVRQFYALSS-DLLLLACDGVYEPSGMDWAYVRDLTVAEMQR-------------------------  300 (364)
T ss_dssp             SSCGGGSSSBCCCEEEEEEECTT-CEEEEECHHHHCSSSCCHHHHHHHHHHHHHH-------------------------
T ss_pred             ccCcccCceEEEeEEEEEECCCC-CEEEEEcCCCCCCCCCCHHHHHHHHHHHHhh-------------------------
Confidence                  35789999999999998 699999999999986  99999887652110                         


Q ss_pred             cchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccccCCCCCCCchHHHHHHHH
Q 014607          315 SKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENTDYKKSPASSGLMAACKEL  394 (421)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l  394 (421)
                                                                                          ...+++++|++|
T Consensus       301 --------------------------------------------------------------------~~~~~~~~a~~L  312 (364)
T 2isn_A          301 --------------------------------------------------------------------SKGDLEEVAARV  312 (364)
T ss_dssp             --------------------------------------------------------------------TTSCHHHHHHHH
T ss_pred             --------------------------------------------------------------------cCCCHHHHHHHH
Confidence                                                                                012688899999


Q ss_pred             HHHHHhcCCCCCcEEEEEEcCc
Q 014607          395 ANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       395 v~~a~~~G~~DnITv~vv~l~~  416 (421)
                      ++.|+++|+.||||||||++..
T Consensus       313 v~~A~~~g~~DNiTvivv~~~~  334 (364)
T 2isn_A          313 MDYAYDMNSQDNISVMLVAFHN  334 (364)
T ss_dssp             HHHHHHTTCCSCEEEEEEEECS
T ss_pred             HHHHHhcCCCCCEEEEEEEcCC
Confidence            9999999999999999999864


No 10 
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=100.00  E-value=5.6e-47  Score=385.04  Aligned_cols=246  Identities=34%  Similarity=0.557  Sum_probs=217.8

Q ss_pred             ceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 014607           71 IGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKTD  150 (421)
Q Consensus        71 ~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~~  150 (421)
                      +.+|+++.+|+|..|||++++...   ..+..+|+|||||||+.+|++|++.+++.+.+.+.. ..++.++|+.+|..++
T Consensus       122 ~~~g~~s~~G~R~~NED~~~~~~~---~~~~~l~~VaDG~GG~~~g~~as~~~~~~l~~~~~~-~~~~~~~l~~a~~~~n  197 (389)
T 4da1_A          122 ENVGCASQIGKRKENEDRFDFAQL---TDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPK-EKNLETLLTLAFLEID  197 (389)
T ss_dssp             GGCEEEEECTTSSSCCEEEEEEEC---SSSEEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTT-CCCHHHHHHHHHHHHH
T ss_pred             eeEEEecCCCCCCCCcceeeeeec---CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHH
Confidence            567899999999999999988542   356789999999999999999999999999887755 5668999999999999


Q ss_pred             HHHHhc--------CCCCCCcEEEEEEeCC-eEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeec-
Q 014607          151 EEFSKQ--------GLVSGACCVTAFIEGH-DVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFH-  220 (421)
Q Consensus       151 ~~~~~~--------~~~~GtT~v~~li~~~-~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~-  220 (421)
                      +.+.+.        ...+|||++++++.++ ++|+|||||||+|++|+|++.+||+||++.++.|++||...||.+... 
T Consensus       198 ~~i~~~~~~~~~~~~~~~GtT~~~~li~~~~~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~Ri~~~gG~v~~~~  277 (389)
T 4da1_A          198 KAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNS  277 (389)
T ss_dssp             HHHHHHHHHSSCGGGGGCEECEEEEEEETTTEEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHHTCCEECC-
T ss_pred             HHHHHHhhhccccccCCCCCeEEEEEEEcCCeEEEEEeeccEEEEEECCEeEEeCCCCCCCCHHHHHHHHHcCCeEeccc
Confidence            988753        2358999999999866 999999999999999999999999999999999999999999988753 


Q ss_pred             CCceeecCccccceeccccccccc-ccccCceEEEEecCC-CeEEEEEccCCCCCCCHHHHHHHHHHHHhccccCccCCC
Q 014607          221 RGAWRVHGILAVSRSIGNAHLKNW-VLAEPDTKILNFSSD-MEFLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLGDF  298 (421)
Q Consensus       221 ~g~~rv~g~l~vtRalGd~~~k~~-v~~~Pdi~~~~l~~~-dd~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~  298 (421)
                      .+.+|++|.+++||+||+..+|+. ++++|++..+.+.++ ++|||||||||||+|+++|+++++..             
T Consensus       278 ~~~~~~~g~l~ltRalGd~~~k~~~v~~~pdi~~~~l~~~~dd~llL~SDGL~d~l~~~ei~~il~~-------------  344 (389)
T 4da1_A          278 LGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQ-------------  344 (389)
T ss_dssp             --CCEETTTBSCSBCEECGGGGGGTCBCCCEEEEEECCSSSCEEEEEECHHHHTTCCHHHHHHHHHH-------------
T ss_pred             CCCccCCCeEeeEeeeCChhhccCCCCCCCceEEEEEcCCCCcEEEEEeCCcccCCCHHHHHHHHHh-------------
Confidence            245689999999999999999874 889999999999875 68999999999999999999999976             


Q ss_pred             CCCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccccC
Q 014607          299 SKDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENTDY  378 (421)
Q Consensus       299 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (421)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (389)
T 4da1_A          345 --------------------------------------------------------------------------------  344 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcCcee
Q 014607          379 KKSPASSGLMAACKELANLAMSRGSLDDITVMIIDLNRFR  418 (421)
Q Consensus       379 ~~~~~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~~~~  418 (421)
                           ..+++++|+.|++.|+.+|+.||||||||++..+.
T Consensus       345 -----~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~  379 (389)
T 4da1_A          345 -----CHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGAWG  379 (389)
T ss_dssp             -----SSSHHHHHHHHHHHHHHHTCCSCEEEEEEEECCC-
T ss_pred             -----cCCHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCC
Confidence                 11678899999999999999999999999998653


No 11 
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}
Probab=100.00  E-value=1.2e-47  Score=385.86  Aligned_cols=203  Identities=23%  Similarity=0.402  Sum_probs=176.6

Q ss_pred             EeccCCCC---CCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHH-HHhhC--CCCHHHHHHHHHHHH
Q 014607           76 SSLKGKKK---FMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFE-MMKNC--TGDKEEAVKAGYLKT  149 (421)
Q Consensus        76 ~s~~G~R~---~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~-~~~~~--~~~~~~~l~~a~~~~  149 (421)
                      ++.+|+|.   .|||++++..   ...+..||||||||||+.+|++|++++++.|.+ .+...  ..++.++|+++|..+
T Consensus        25 ~~~~G~r~~~~~nED~~~~~~---~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~l~~~~~~~~~~~~l~~a~~~~  101 (358)
T 2irm_A           25 YKDDGRRCEGYESRDKKCLCI---SDNNTSLYAILSGHNGVTVAENALQEMAAELLLGQLNVCNTDEAVKELIRQSFMSV  101 (358)
T ss_dssp             ECSSSCEEECSSCCEEEEEEE---CSSSEEEEEEEEEESCSHHHHHHHHHHHHHSSSSTTTTCCSHHHHHHHHHHHHHHH
T ss_pred             eecCCCCCCCCCCCceEEEEE---CCCCEEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            77799987   4999998764   335678999999999999999999999998865 22211  123688999999999


Q ss_pred             hHHHHhc-----------------------------------------CCCCCCcEEEEEEeCCeEEEEecCCcEEEEEe
Q 014607          150 DEEFSKQ-----------------------------------------GLVSGACCVTAFIEGHDVVVSNLGDCRAVLCR  188 (421)
Q Consensus       150 ~~~~~~~-----------------------------------------~~~~GtT~v~~li~~~~l~vanvGDSRa~l~r  188 (421)
                      |+.+.+.                                         ...+|||+++++|.+++||||||||||+|++|
T Consensus       102 d~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~~~~l~vAnvGDSRa~l~r  181 (358)
T 2irm_A          102 EKGYFDSINPHVATKTAIQLHLSADGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNIGNCRALLCK  181 (358)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHTTC---------------CCCTHHHHHTTTTCEEEEEEEEEESSEEEEEEESSCEEEEEE
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccchhhccchhhhcccccCCCCCCCcEEEEEEECCEEEEEEcccCeEEEEE
Confidence            9988641                                         23589999999999999999999999999999


Q ss_pred             C---C--eeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceecccccccc--------------cccccC
Q 014607          189 G---G--VAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKN--------------WVLAEP  249 (421)
Q Consensus       189 ~---g--~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~--------------~v~~~P  249 (421)
                      +   |  ++++||+||++.++.|++||...||.+..    +|+.|.+ +||||||+.+|.              .++++|
T Consensus       182 ~~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~----~r~~g~l-lTRalGd~~~K~~~~~~~~~~~~~~~~v~~~P  256 (358)
T 2irm_A          182 TDEHDTLTVTQLSVDHNLLNAEEAARLFRLGLMAQN----FEGVPLY-STRCIGNYLGKAGYKDCNFLSSATAEPVIFEP  256 (358)
T ss_dssp             CCTTCSCEEEECSCCCBTTSHHHHHHHHTTTCCGGG----GTTCTTC-BSBCEECHHHHTTGGGSSSSTTCSSCSSBCCC
T ss_pred             ecCCCceeeEeCCCCCCCCCHHHHHHHHHcCCeEec----cCcCCEE-cccCCcCHHHhccccccccccccCCCCEeccC
Confidence            8   8  99999999999999999999999999875    4777877 999999988773              689999


Q ss_pred             ceEE-EEecCCCeEEEEEccCCCCCCC----------HHHHHHHHHHH
Q 014607          250 DTKI-LNFSSDMEFLVLASDGFWDEVG----------NQEAVDIVKRL  286 (421)
Q Consensus       250 di~~-~~l~~~dd~lvLaSDGlwD~ls----------~~ei~~iv~~~  286 (421)
                      ++.. ++|.++|+|||||||||||+|+          ++||+++++..
T Consensus       257 di~~~~~l~~~d~fllL~SDGl~d~l~~~~~~~~~~~~~ei~~~v~~~  304 (358)
T 2irm_A          257 EIVGGIQITPACRFLVLMSSGLCRALHEIFPGDASTGNRELVRMISEE  304 (358)
T ss_dssp             EEEEEEECCTTEEEEEEECHHHHHHHHHHSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCcEEEEECCCcccCccccccccccccHHHHHHHHHHH
Confidence            9994 9999997899999999999999          99999999884


No 12 
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=100.00  E-value=1.1e-47  Score=391.71  Aligned_cols=214  Identities=24%  Similarity=0.347  Sum_probs=183.0

Q ss_pred             cCceEEEEeccCCCC--------CCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHH-HhhC--CCC
Q 014607           69 SGIGVAVSSLKGKKK--------FMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEM-MKNC--TGD  137 (421)
Q Consensus        69 ~~~~~g~~s~~G~R~--------~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~-~~~~--~~~  137 (421)
                      ..+++|+++++|+|.        .|||++++..   ...+..||||||||||+.+|++|+++++..|.+. +...  ..+
T Consensus        25 ~~~~~G~~~~~G~r~~g~~~~r~~nED~~~~~~---~~~~~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~  101 (401)
T 2j4o_A           25 HLSGVGSASNRSYSADGKGTESHPPEDSWLKFR---SENNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEAD  101 (401)
T ss_dssp             TTEEEEEECCEEECSSSSCEECCCCCEEEEEEE---ETTTEEEEEEEEEESSSHHHHHHHHHHHHTTSSSSCCTTSCHHH
T ss_pred             ccCceeEEecccccccccccCCCCCCceEEEec---CCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhcccchhh
Confidence            357899999999988        4999998764   2356789999999999999999999999887532 1111  124


Q ss_pred             HHHHHHHHHHHHhHHHHhc----------------------------------------CCCCCCcEEEEEEeCCeEEEE
Q 014607          138 KEEAVKAGYLKTDEEFSKQ----------------------------------------GLVSGACCVTAFIEGHDVVVS  177 (421)
Q Consensus       138 ~~~~l~~a~~~~~~~~~~~----------------------------------------~~~~GtT~v~~li~~~~l~va  177 (421)
                      +.++|+++|..+++.+.+.                                        ...+|||+++++|.+++||||
T Consensus       102 ~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~va  181 (401)
T 2j4o_A          102 VRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVA  181 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccchhhhhhhcccccCCCccCEEEEEEECCEEEEE
Confidence            7789999999988876541                                        235899999999999999999


Q ss_pred             ecCCcEEEEEeCC----eeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceeccccccc-----------
Q 014607          178 NLGDCRAVLCRGG----VAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLK-----------  242 (421)
Q Consensus       178 nvGDSRa~l~r~g----~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k-----------  242 (421)
                      ||||||+|++|++    ++++||.||++.++.|++||...||.+....+ .|++|.|++||||||+.+|           
T Consensus       182 nvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~~-~r~~g~l~vtRalGd~~~k~~~~~~~~~~~  260 (401)
T 2j4o_A          182 NVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQ-VGIICGQESTRRIGDYKVKYGYTDIDLLSA  260 (401)
T ss_dssp             EESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHHHHTTTCCHHHHHH-HCCBTTBCCSBCEECHHHHHSGGGSTTTTT
T ss_pred             EccCceEEEEEcCCCCceEEECCCCCCCCCHHHHHHHHHcCCCeeeccC-ccccCCcccccccCCHhhcccccccccccc
Confidence            9999999999988    99999999999999999999999998643222 3888999999999998877           


Q ss_pred             ---ccccccCceEE-EEecCCCeEEEEEccCCCCCC--------CHHHHHHHHHHH
Q 014607          243 ---NWVLAEPDTKI-LNFSSDMEFLVLASDGFWDEV--------GNQEAVDIVKRL  286 (421)
Q Consensus       243 ---~~v~~~Pdi~~-~~l~~~dd~lvLaSDGlwD~l--------s~~ei~~iv~~~  286 (421)
                         +.++++|++.. ++|.++|+|||||||||||+|        +++||+++|...
T Consensus       261 ~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v~~~  316 (401)
T 2j4o_A          261 AKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTE  316 (401)
T ss_dssp             CSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCCCeeccceEEEeEEeCCCCcEEEEEccchhhcccccccCCCCHHHHHHHHHHH
Confidence               47899999996 999998789999999999999        899999999884


No 13 
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=100.00  E-value=9.2e-46  Score=383.65  Aligned_cols=215  Identities=31%  Similarity=0.484  Sum_probs=179.4

Q ss_pred             EEEEecc-CCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHH------hh------------
Q 014607           73 VAVSSLK-GKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMM------KN------------  133 (421)
Q Consensus        73 ~g~~s~~-G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~------~~------------  133 (421)
                      .++.+.+ |.|..|||++.+..++.  .+..||||||||||+.+|++|+++++..|.+.+      ..            
T Consensus        39 ~~~~s~~g~~R~~nED~~~v~~~~~--~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~  116 (467)
T 2pnq_A           39 LGFDSNRLPANAPIEDRRSATTCLQ--TRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALL  116 (467)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEESS--SSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CC
T ss_pred             EEEEeeccCCCCCCCCceeeeeccC--CCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhcccccc
Confidence            3444445 55999999998876543  456899999999999999999999999887542      10            


Q ss_pred             ----------------------------------------CCCCHHHHHHHHHHHHhHHHHhcC----------------
Q 014607          134 ----------------------------------------CTGDKEEAVKAGYLKTDEEFSKQG----------------  157 (421)
Q Consensus       134 ----------------------------------------~~~~~~~~l~~a~~~~~~~~~~~~----------------  157 (421)
                                                              ...++.++|+++|..+|+.+.+..                
T Consensus       117 ~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~  196 (467)
T 2pnq_A          117 PILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRV  196 (467)
T ss_dssp             CCEEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhhcchhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Confidence                                                    111688999999999999887532                


Q ss_pred             CCCCCcEEEEEEeCCeEEEEecCCcEEEEEe---CC--eeeecCCCCCCCChHHHhhHHhcCCeeee--cCCceeecCcc
Q 014607          158 LVSGACCVTAFIEGHDVVVSNLGDCRAVLCR---GG--VAEALTNDHKAGREDERKRIENKGGYVEF--HRGAWRVHGIL  230 (421)
Q Consensus       158 ~~~GtT~v~~li~~~~l~vanvGDSRa~l~r---~g--~~~~LT~DH~~~~~~E~~rI~~~gg~v~~--~~g~~rv~g~l  230 (421)
                      ..+|||++++++.+++||||||||||||++|   +|  .+.+||.||++.++.|++||...|+....  ....+|+.|.|
T Consensus       197 ~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~Rv~G~l  276 (467)
T 2pnq_A          197 AFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLL  276 (467)
T ss_dssp             HHSEECEEEEEEETTEEEEEEESSCEEEEEEECTTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSSSBTTTB
T ss_pred             CCCcceEEEEEEECCEEEEEECCCceEEEEEecCCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecCcccccc
Confidence            3589999999999999999999999999999   47  89999999999999999999999864311  01124999999


Q ss_pred             ccceeccccccc---------------------------------ccccccCceEEEEecCCCeEEEEEccCCCCCCCHH
Q 014607          231 AVSRSIGNAHLK---------------------------------NWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQ  277 (421)
Q Consensus       231 ~vtRalGd~~~k---------------------------------~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~  277 (421)
                      ++||||||..+|                                 ++++++|++..++|.++|.|||||||||||+|+++
T Consensus       277 ~vtRAlGd~~~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~  356 (467)
T 2pnq_A          277 MPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQ  356 (467)
T ss_dssp             SSSBCEECGGGTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHH
T ss_pred             ccchhcCchhhcccchhhhhhhcccccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChH
Confidence            999999999877                                 23789999999999999789999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 014607          278 EAVDIVKRLLAG  289 (421)
Q Consensus       278 ei~~iv~~~~~~  289 (421)
                      |+++++...+..
T Consensus       357 eiv~iv~~~~~~  368 (467)
T 2pnq_A          357 DVVRIVGEYLTG  368 (467)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987543


No 14 
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=100.00  E-value=4.5e-42  Score=327.14  Aligned_cols=233  Identities=21%  Similarity=0.281  Sum_probs=191.9

Q ss_pred             CceEEEEeccCC-CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhC----CCCHHHHHHH
Q 014607           70 GIGVAVSSLKGK-KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNC----TGDKEEAVKA  144 (421)
Q Consensus        70 ~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~----~~~~~~~l~~  144 (421)
                      .+.|+..+++|+ |+.|||++.+....   ++..+|+|||||||+.+|+++++.+++.+.+.+...    ..++.++|++
T Consensus         5 ~~~~~~~s~~G~~r~~neD~~~~~~~~---~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~   81 (250)
T 2pk0_A            5 YMEISLLTDIGQRRSNNQDFINQFENK---AGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLV   81 (250)
T ss_dssp             CEEEEEEEECCTTCSCCCEEEEEEECT---TCCEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             eEEEEEecCCCCCCCcCCCceEeccCC---CCcEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence            467999999999 99999999887642   356899999999999999999999999998443322    1236778999


Q ss_pred             HHHHHhHHHHhcC-----CCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeee
Q 014607          145 GYLKTDEEFSKQG-----LVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEF  219 (421)
Q Consensus       145 a~~~~~~~~~~~~-----~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~  219 (421)
                      +|..+|+.+.+..     ..+|||++++++.+++++++|+||||+|++|+|++.+||.||++.++.+.     .|+. ..
T Consensus        82 ~~~~~~~~l~~~~~~~~~~~~gtT~~~~~i~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~-----~g~i-~~  155 (250)
T 2pk0_A           82 SIETENRKIYELGQSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVK-----AGQL-TE  155 (250)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHH-----TTSS-CH
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcceEEEEEEECCeEEEEEeCCCeEEEEcCCcEEEeCCCCCHHHHHHH-----cCCC-CH
Confidence            9999999887642     35899999999999999999999999999999999999999998655432     2321 11


Q ss_pred             cCCceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHHHhccccCccCCCC
Q 014607          220 HRGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLGDFS  299 (421)
Q Consensus       220 ~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~  299 (421)
                      . +.....+.+.+||+||+..     .++|++..+++.++ |+||||||||||+++++|+.+++..              
T Consensus       156 ~-~~~~~~~~~~ltralG~~~-----~~~p~~~~~~l~~g-d~lll~SDGl~d~l~~~~i~~~~~~--------------  214 (250)
T 2pk0_A          156 E-EAASHPQKNIITQSIGQAN-----PVEPDLGVHLLEEG-DYLVVNSDGLTNMLSNADIATVLTQ--------------  214 (250)
T ss_dssp             H-HHHTCCSCCCBSCCBSCSS-----CCCCEEEEEECCTT-CEEEEECHHHHTTSCHHHHHHHHTS--------------
T ss_pred             H-HHHhCCCcceEEeecCCCC-----CccceEEEEEcCCC-CEEEEECCCCCCCcCHHHHHHHHhc--------------
Confidence            1 0012234569999999943     67999999999998 7999999999999999999988864              


Q ss_pred             CCCCCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccccCC
Q 014607          300 KDDDEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENTDYK  379 (421)
Q Consensus       300 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (250)
T 2pk0_A          215 --------------------------------------------------------------------------------  214 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcCc
Q 014607          380 KSPASSGLMAACKELANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       380 ~~~~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~~  416 (421)
                          ..+++++|++|++.|+.+|+.||||||||++..
T Consensus       215 ----~~~~~~~a~~L~~~a~~~g~~DniTvivv~~~~  247 (250)
T 2pk0_A          215 ----EKTLDDKNQDLITLANHRGGLDNITVALVYVES  247 (250)
T ss_dssp             ----SSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECC
T ss_pred             ----CCCHHHHHHHHHHHHHHcCCCCCeEEEEEEeeC
Confidence                116788999999999999999999999999863


No 15 
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=100.00  E-value=1.4e-41  Score=321.24  Aligned_cols=225  Identities=20%  Similarity=0.279  Sum_probs=184.7

Q ss_pred             ceEEEEeccCC-CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 014607           71 IGVAVSSLKGK-KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNC-TGDKEEAVKAGYLK  148 (421)
Q Consensus        71 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~-~~~~~~~l~~a~~~  148 (421)
                      +.|+..+.+|+ |+.|||++++        +..+|+|||||||+.+|+++++.+++.+.+.+... ..++.++|+++|..
T Consensus         5 ~~~~~~s~~G~~r~~nED~~~~--------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~l~~a~~~   76 (237)
T 1txo_A            5 LRYAARSDRGLVRANNEDSVYA--------GARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRA   76 (237)
T ss_dssp             EEEEEEEECCSSCSSCCEEEEE--------CSSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCcCCCcccc--------CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Confidence            57899999997 9999999875        23599999999999999999999999998765433 24688999999999


Q ss_pred             HhHHHHhc------CCCCCCcEEEEEEeCCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCC
Q 014607          149 TDEEFSKQ------GLVSGACCVTAFIEGHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRG  222 (421)
Q Consensus       149 ~~~~~~~~------~~~~GtT~v~~li~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g  222 (421)
                      +++.+.+.      ...+|||++++++.+++++++|+||||+|++|+|++.+||.||++.++.     ...| .+.....
T Consensus        77 ~~~~i~~~~~~~~~~~~~gtT~~~~~i~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~~-----~~~G-~i~~~~~  150 (237)
T 1txo_A           77 GNSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTL-----VDEG-RITPEEA  150 (237)
T ss_dssp             HHHHHHHHHHHCGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECSCCCBHHHHH-----HHTT-SSCTTGG
T ss_pred             HHHHHHHHHhhCCCCCCCcceEEEEEEECCEEEEEEEccCcEEEEeCCEeEEeCCCCCHHHHH-----HHcC-CCCHHHH
Confidence            99988653      1347999999999999999999999999999999999999999986433     2233 2211111


Q ss_pred             ceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHHHHhccccCccCCCCCCC
Q 014607          223 AWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKRLLAGKAIGTLGDFSKDD  302 (421)
Q Consensus       223 ~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~~  302 (421)
                      .++ .....+||++|+.      ..+|++..+++.++ |+||||||||||+++++|+.++++.                 
T Consensus       151 ~~~-~~~~~~tr~lg~~------~~~p~~~~~~l~~~-d~lvl~SDGl~d~l~~~~i~~~~~~-----------------  205 (237)
T 1txo_A          151 HSH-PQRSLIMRALTGH------EVEPTLTMREARAG-DRYLLCSDGLSDPVSDETILEALQI-----------------  205 (237)
T ss_dssp             GGC-TTTTCBCCCBSSS------CCCCEEEEEECCTT-CEEEEECHHHHTTSCHHHHHHHHTS-----------------
T ss_pred             hhC-ccccceeeccCCC------CccceEEEEecCCC-CEEEEECCCCCCCCCHHHHHHHHhc-----------------
Confidence            001 1123699999962      57899999999998 7889999999999999999998843                 


Q ss_pred             CCCCccccCCCCcchhhhhhhhhcccccCCccccccccccccccccCCCCCcccchheeecccccccccccccccCCCCC
Q 014607          303 DEDYGCVNVSPSSKIRRVSLVKQAKDASLSPRCKKTISEDDFASELGSPSSKSRRISIIKRINVKTESSSQENTDYKKSP  382 (421)
Q Consensus       303 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (237)
T 1txo_A          206 --------------------------------------------------------------------------------  205 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchHHHHHHHHHHHHHhcCCCCCcEEEEEEcCc
Q 014607          383 ASSGLMAACKELANLAMSRGSLDDITVMIIDLNR  416 (421)
Q Consensus       383 ~~~~~~~a~~~lv~~a~~~G~~DnITv~vv~l~~  416 (421)
                        .+|+++|++|++.|+.+|+.||||||||++.|
T Consensus       206 --~~~~~~a~~L~~~a~~~g~~DniTvivv~~~~  237 (237)
T 1txo_A          206 --PEVAESAHRLIELALRGGGPDNVTVVVADLEH  237 (237)
T ss_dssp             --SSHHHHHHHHHHHHHHTTCCSCEEEEEEEEEC
T ss_pred             --CCHHHHHHHHHHHHHHcCCCCCeEEEEEEeeC
Confidence              16778999999999999999999999999864


No 16 
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=100.00  E-value=1.1e-40  Score=315.37  Aligned_cols=196  Identities=20%  Similarity=0.238  Sum_probs=153.7

Q ss_pred             ceEEEEeccCC-CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhC----CCCHHHHHHHH
Q 014607           71 IGVAVSSLKGK-KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNC----TGDKEEAVKAG  145 (421)
Q Consensus        71 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~----~~~~~~~l~~a  145 (421)
                      +.|++.+++|+ |+.|||++ +....   .+. +|+|||||||+.+|+++++.+++.+.+.+...    ..++.++|.++
T Consensus         1 ~~~~~~s~~G~~r~~neD~~-~~~~~---~~~-~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~   75 (240)
T 2j82_A            1 MDVAGLTDCGLIRKSNQDAF-YIDEK---HQR-FFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA   75 (240)
T ss_dssp             CEEEEEEECCSSCSSCCEEE-EECTT---TCC-EEEEEEBC---CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             CeEEEeCCCCCCCCcCCCcc-EecCC---CCe-EEEEEcCCCCchHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHH
Confidence            46899999999 99999999 65431   334 99999999999999999999999988765442    45688999999


Q ss_pred             HHHHhHHHHhcC------CCCCCcEEEEEEe--CCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCee
Q 014607          146 YLKTDEEFSKQG------LVSGACCVTAFIE--GHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYV  217 (421)
Q Consensus       146 ~~~~~~~~~~~~------~~~GtT~v~~li~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v  217 (421)
                      |..+|+.+.+..      ..+|||++++++.  +++++++|+||||+|++|+|++.+||.||++.++.++.+.....+  
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~i~~~~~~l~~anvGDsr~~l~r~~~~~~lt~dh~~~~~~~~~g~i~~~~--  153 (240)
T 2j82_A           76 FLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQ--  153 (240)
T ss_dssp             HHHHHHHHHHHHTTSCSCTTCCBCEEEEEECTTSSEEEEEEESSCEEEEEETTEEEECSCCCBHHHHC------------
T ss_pred             HHHHHHHHHHHhhcccCCCCCCceEEEEEEEecCCEEEEEEEccCceEEEeCCEEEEECCCCcHHHHHHHcCCCCHHH--
Confidence            999999987642      2379999999999  999999999999999999999999999999865533322111111  


Q ss_pred             eecCCceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHH
Q 014607          218 EFHRGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVK  284 (421)
Q Consensus       218 ~~~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~  284 (421)
                           ..+..+.+.+||+||+     ....+|++..+++.++ |+||||||||||+++++|+.+++.
T Consensus       154 -----~~~~~~~~~ltralG~-----~~~~~p~~~~~~l~~g-d~lll~SDGl~d~l~~~~i~~~l~  209 (240)
T 2j82_A          154 -----ARQHPWRHVLSQCLGR-----EDLSQIDIQPIDLEPG-DRLLLCSDGLTEELTDDVISIYLS  209 (240)
T ss_dssp             -----------CCCBSCCBSC-----TTCCCCEEEEEECCTT-CEEEEECHHHHTTSCHHHHHHHHT
T ss_pred             -----HhcCCCcCeEeecCCC-----CCceeEEEEEEeeCCC-CEEEEECCCCCCCCCHHHHHHHHc
Confidence                 1123345689999999     3467999999999998 789999999999999999998885


No 17 
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=100.00  E-value=4.6e-40  Score=310.24  Aligned_cols=189  Identities=19%  Similarity=0.234  Sum_probs=151.2

Q ss_pred             ceEEEEeccCC-CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 014607           71 IGVAVSSLKGK-KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKT  149 (421)
Q Consensus        71 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~  149 (421)
                      +.++..+.+|+ |+.|||++++        +..+|+|||||||+  |+.||+.+.+.+.+.+.... + .+.+.++|..+
T Consensus         6 ~~~~~~s~~G~~r~~neD~~~~--------~~~~~~V~DG~Gg~--G~~as~~~~~~l~~~~~~~~-~-~~~l~~~~~~~   73 (234)
T 2jfr_A            6 LSAATATDQGPVRENNQDACLA--------DGILYAVADGFGAR--GHHASATALKTLSAGFAAAP-D-RDGLLEAVQQA   73 (234)
T ss_dssp             EEEEEEEECCSSCSSCCEEEEE--------ETTEEEEEEEESTT--HHHHHHHHHHHHHHHHHHSC-S-HHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCcCCCccee--------CCcEEEEEeCCCcc--HHHHHHHHHHHHHHHHhcCC-c-HHHHHHHHHHH
Confidence            67899999999 9999999965        23599999999988  66666666666666554432 3 78899999999


Q ss_pred             hHHHHhcCC----CCCCcEEEEEEeCCe---EEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCC
Q 014607          150 DEEFSKQGL----VSGACCVTAFIEGHD---VVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRG  222 (421)
Q Consensus       150 ~~~~~~~~~----~~GtT~v~~li~~~~---l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g  222 (421)
                      |+.+.+...    .+|||++++++.+++   ++++|+||||+|++|+|++.+||.||++.++.     ...|.....  +
T Consensus        74 ~~~l~~~~~~~~~~~gtT~~~~~i~~~~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~-----~~~g~i~~~--~  146 (234)
T 2jfr_A           74 NLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGDSPLYRIRDGHMEQLTDDHSVAGEL-----VRMGEITRH--E  146 (234)
T ss_dssp             HHHHHHHHTTSSSCCEECEEEEECCCGGGTSCEEEEESSCCEEEEETTEEEECSCCCBHHHHH-----HHTTSSCHH--H
T ss_pred             HHHHHHhhccCCCCCCccEEEEEEECCCccEEEEEEEccCceEEEECCEEEEeCCCCCHHHHH-----HHcCCCCHH--H
Confidence            998876432    289999999999998   99999999999999999999999999986543     223321111  0


Q ss_pred             ceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHH
Q 014607          223 AWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKR  285 (421)
Q Consensus       223 ~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~  285 (421)
                      .....+.+.+||+||+.     ...+|++..+++.++ |+||||||||||+++++++.+++ .
T Consensus       147 ~~~~~~~~~~tralG~~-----~~~~~~~~~~~l~~g-d~lll~SDGl~d~~~~~~i~~~~-~  202 (234)
T 2jfr_A          147 ARWHPQRHLLTRALGIG-----PHIGPDVFGIDCGPG-DRLLISSDGLFAAADEALIVDAA-T  202 (234)
T ss_dssp             HTTCTTTTCBSCCBSSS-----SCCCCEEEECCCCTT-CEEEEECGGGGTTSCHHHHHHHH-T
T ss_pred             HhcCcccceeeecCcCC-----CCceeEEEEEecCCC-CEEEEECCCCccccCHHHHHHHH-c
Confidence            01223456899999993     467999999999998 88999999999999999999988 5


No 18 
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Probab=100.00  E-value=2.2e-36  Score=281.97  Aligned_cols=165  Identities=20%  Similarity=0.236  Sum_probs=126.3

Q ss_pred             CCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhHHHHhc------CCCCCCcEEEEEEe--
Q 014607           99 SNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKTDEEFSKQ------GLVSGACCVTAFIE--  170 (421)
Q Consensus        99 ~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~~~~~~~~------~~~~GtT~v~~li~--  170 (421)
                      ++..+|+|||||||+.+|++||+.+++.+.+.+.... .+.    +++..+++.+.+.      ...+|||++++++.  
T Consensus         8 ~~~~l~~VaDG~GG~~~g~~AS~~~~~~l~~~~~~~~-~~~----~~~~~an~~l~~~~~~~~~~~~~GtT~~~~~i~~~   82 (211)
T 3rnr_A            8 GDKAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGG-SPL----DAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLR   82 (211)
T ss_dssp             TTEEEEEEEEECTTSTTHHHHHHHHHHHHHHHHHTTC-CHH----HHHHHHHHHHHHHHHHTTCTTSCCEEEEEEEEETT
T ss_pred             CCccEEEEEeCCcCcHHHHHHHHHHHHHHHHHHhccC-CHH----HHHHHHHHHHHHHHhhccCCCCcchhheeeeeeeC
Confidence            5678999999999999999999999999998876543 343    5555555555432      23489999999999  


Q ss_pred             CCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeecCccccceecccccccccccccCc
Q 014607          171 GHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVHGILAVSRSIGNAHLKNWVLAEPD  250 (421)
Q Consensus       171 ~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pd  250 (421)
                      ++++|++|+||||+|++|+|++.+||+||++.++..+.++ ..      .    .......+||+||..     ...+|+
T Consensus        83 ~~~~~~anvGDSr~yl~r~g~~~~lt~dh~~~~~~~~~g~-~~------~----~~~~~~~ltralG~~-----~~~~~~  146 (211)
T 3rnr_A           83 DGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGR-GP------V----PGPAGEMITSFIGIE-----NLTEIS  146 (211)
T ss_dssp             TTEEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTS-CC------C----CSHHHHCBSCCBTCS-----SCCCCE
T ss_pred             CCEEEEEEEccCeEEEEeCCEEEEECCCcHHHHHHHHcCC-Ch------h----hCCCccEEecccCCC-----CCccee
Confidence            9999999999999999999999999999998766554443 21      1    122234799999983     356788


Q ss_pred             e--EEEEecCCCeEEEEEccCCCCCCCHHHHHHHHHH
Q 014607          251 T--KILNFSSDMEFLVLASDGFWDEVGNQEAVDIVKR  285 (421)
Q Consensus       251 i--~~~~l~~~dd~lvLaSDGlwD~ls~~ei~~iv~~  285 (421)
                      +  ..+++.++ |+||||||||||+++++|+.+++..
T Consensus       147 ~~~~~~~l~~g-d~llL~SDGl~d~~~~~~i~~~l~~  182 (211)
T 3rnr_A          147 TSEAPLPLEAG-EGVLVVSDGVYRSLHEDRIAMALSR  182 (211)
T ss_dssp             ECSSCEECCTT-CEEEEEEC-----CCTTEEEEEECT
T ss_pred             EecceecCCCC-CEEEEEcCCCCCCcCHHHHHHHHhc
Confidence            8  78999998 8899999999999999888766543


No 19 
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=99.82  E-value=1.8e-19  Score=170.25  Aligned_cols=166  Identities=13%  Similarity=0.149  Sum_probs=111.6

Q ss_pred             ceEEEEecc-CCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 014607           71 IGVAVSSLK-GKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKT  149 (421)
Q Consensus        71 ~~~g~~s~~-G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~  149 (421)
                      +.+|+++.. ..+..+.|.+.+...   ..+..+|+|+||+|+...|.+++..+...+....... .++    .+++..+
T Consensus         8 i~~~~~~~~~p~~~v~GD~y~~~~~---~~~~~~~~vaDg~G~G~~aa~~s~~~~~~l~~~~~~~-~~~----~~~l~~~   79 (242)
T 3t91_A            8 VSTGAAHAAKGGGLVSGDSYSMMEL---GARKYAAAISDGMGNGARAHFESNETIKLLEKILESG-IDE----KIAIKTI   79 (242)
T ss_dssp             EEEEEEEECTTSCSCCSCEEEEEEE---TTTEEEEEEECC-----CCSEEECHHHHHHHHHHHHT-CCH----HHHHHHH
T ss_pred             EEEEeehhcCCccccCCcEEEEEEe---CCCeEEEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhC-CCH----HHHHHHH
Confidence            445665553 337789999887653   2455679999999988888888777777776655432 233    4445566


Q ss_pred             hHHHHhcC-CCCCCcEEEEEEe--CCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceee
Q 014607          150 DEEFSKQG-LVSGACCVTAFIE--GHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRV  226 (421)
Q Consensus       150 ~~~~~~~~-~~~GtT~v~~li~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv  226 (421)
                      |+.+.... ..+++|++++++.  .++++++|+||+|+|++|+|++.+|+.++.+                         
T Consensus        80 n~~l~~~~~~~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r~g~~~~l~~~~~~-------------------------  134 (242)
T 3t91_A           80 NSILSLRTTDEIYSTLDLSIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLP-------------------------  134 (242)
T ss_dssp             HHHHTTC----CCCCEEEEEEETTTCEEEEEEESCCCEEEEETTEEEECCCC----------------------------
T ss_pred             HHHHHhcCCCCeEeEEEEEEEECCCCEEEEEcCCCCceEEEECCEEEEecCCCce-------------------------
Confidence            66665442 3577999999886  7899999999999999999999988655332                         


Q ss_pred             cCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCC-----HHHHHHHHH
Q 014607          227 HGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVG-----NQEAVDIVK  284 (421)
Q Consensus       227 ~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls-----~~ei~~iv~  284 (421)
                               +|-     .....++...+.+.++ |.|+||||||||.++     +..+.+++.
T Consensus       135 ---------lG~-----~~~~~~~~~~~~l~~G-D~lll~SDGl~e~~~~~~~~~~~~~~ll~  182 (242)
T 3t91_A          135 ---------IGI-----INEFDVEVVSEQLKAG-DLLIMMSDGIFEGPKHVENHDLWMKRKMK  182 (242)
T ss_dssp             -----------C-----CCTTCEEEEEEECCTT-CEEEEECHHHHTCSTTCSCHHHHHHHHHH
T ss_pred             ---------eEe-----cCCCcceEEEEEeCCC-CEEEEECCCcccCCCcccchHHHHHHHHH
Confidence                     222     1123456778889998 899999999999998     445555443


No 20 
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=99.80  E-value=1.1e-17  Score=158.62  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=115.4

Q ss_pred             eEEEEeccC-CCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 014607           72 GVAVSSLKG-KKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLKTD  150 (421)
Q Consensus        72 ~~g~~s~~G-~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~~~  150 (421)
                      .+++++... .+..+.|.+.+...   ..+..+|+|+||+|+...|.+++..+...+.+.+... ..+.    +++..+|
T Consensus        12 ~~~~~~~~~~~~~vgGD~y~~~~~---~~~~~~~~vaD~~G~G~~aa~~s~~~~~~l~~~~~~~-~~~~----~~l~~~n   83 (242)
T 3pu9_A           12 ELAVAKTHKFGTRESGDTVELVER---PGGGFSAVLVDGQGSGAGAKRLSLLVAGAAVRLLNEG-VRDG----AAARAAH   83 (242)
T ss_dssp             EEEEEEECCTTCSSCSEEEEEEEC---TTSEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHTT-CCHH----HHHHHHH
T ss_pred             EEEEEecccCccccCCceEEEEEe---CCCEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHcC-CCHH----HHHHHHH
Confidence            355555443 36778999887642   2345679999999999999999998888877665432 2343    4455566


Q ss_pred             HHHHhc-CCCCCCcEEEEEEe--CCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceeec
Q 014607          151 EEFSKQ-GLVSGACCVTAFIE--GHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRVH  227 (421)
Q Consensus       151 ~~~~~~-~~~~GtT~v~~li~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv~  227 (421)
                      +.+... ...+.+|++++++.  .++++++|+||+++|++|+|++.+|+.+|.+                          
T Consensus        84 ~~l~~~~~~~~~~T~~~~~id~~~~~l~~~~aG~~~~~l~r~g~~~~l~~~~~~--------------------------  137 (242)
T 3pu9_A           84 DFLYAMRDGKVSAALDILSVDLASRSVLVTRNSEVPMLLGRNGEFEQISESGGR--------------------------  137 (242)
T ss_dssp             HHHHHHTTTCCCEEEEEEEEETTTTEEEEEEESCCCEEEEETTEEEEECCCCCC--------------------------
T ss_pred             HHHHhccCCCcEEEEEEEEEECCCCEEEEEeCCCCcEEEEECCEEEEeCCCCcc--------------------------
Confidence            655443 23467899888885  6789999999999999999999999987654                          


Q ss_pred             CccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCH
Q 014607          228 GILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGN  276 (421)
Q Consensus       228 g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~  276 (421)
                              +|-.     -...++...+++.++ |.|+||||||+|..+.
T Consensus       138 --------lG~~-----~~~~~~~~~~~l~~G-d~lll~TDGl~e~~~~  172 (242)
T 3pu9_A          138 --------IGIY-----RHTRPRVLEFPAEPG-LTVILVSDGIIGAGGR  172 (242)
T ss_dssp             --------BSSC-----TTCCCEEEEEECCTT-CEEEEECHHHHTTTTT
T ss_pred             --------cccc-----CCCCceEEEEEeCCC-CEEEEECcCcccCCCC
Confidence                    2321     123567778899998 8999999999987654


No 21 
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Probab=99.74  E-value=9.4e-17  Score=152.86  Aligned_cols=168  Identities=17%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             eecCceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhh---CCCCHHHHHH
Q 014607           67 SFSGIGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKN---CTGDKEEAVK  143 (421)
Q Consensus        67 ~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~---~~~~~~~~l~  143 (421)
                      ...++.+++..... +...-|.+-+...   .++..+++|+||+|+...|.+++..+...+...+..   ..........
T Consensus        34 ~~~~~~~~~~~~p~-~~vgGD~yd~~~~---~~~~~~~~vaD~~GhG~~aa~~s~~~~~~~~~~~~~~~~~~~~~~~~p~  109 (255)
T 3f79_A           34 SIEGLEFSHRIIPS-LYLSGDFVDYFRV---DERRVAFYLADVSGHGASSAFVTVLLKFMTTRLLYESRRNGTLPEFKPS  109 (255)
T ss_dssp             EETTEEEEEEEECS-SSSCSEEEEEEEE---TTTEEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHHTTCCC----CHH
T ss_pred             CCCCEEEEEEEeEh-hhcCceEEeEEEe---CCCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCHH
Confidence            34566666655544 5667898755542   245678999999998888888877776666544321   1111233356


Q ss_pred             HHHHHHhHHHHhcCCCCCCcEEEEEEe--CCeEEEEecCC-cEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeec
Q 014607          144 AGYLKTDEEFSKQGLVSGACCVTAFIE--GHDVVVSNLGD-CRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFH  220 (421)
Q Consensus       144 ~a~~~~~~~~~~~~~~~GtT~v~~li~--~~~l~vanvGD-SRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~  220 (421)
                      +.+..+|+.+.+....+++|++++++.  .++++++|+|+ ++.|++++|++.+|+.+|.+                   
T Consensus       110 ~~l~~ln~~l~~~~~~~~~T~~~~~id~~~~~l~~~~aGh~p~~~l~~~g~~~~l~~~~~~-------------------  170 (255)
T 3f79_A          110 EVLAHINRGLINTKLGKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFVEGQAGYLEGRGLP-------------------  170 (255)
T ss_dssp             HHHHHHHHHHBTTBSSCCEEEEEEEEETTTTEEEEEECSCSCCCEEEC--CEEECCC-----------------------
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEEEEECCCCEEEEEeCCCCCceEEEeCCeEEEeCCCCce-------------------
Confidence            677778888877666789999999994  67899999999 56899999999999877654                   


Q ss_pred             CCceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHH
Q 014607          221 RGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQE  278 (421)
Q Consensus       221 ~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~e  278 (421)
                                     +|-.     -...++...+.+.++ |.|+||||||+|.++.++
T Consensus       171 ---------------lG~~-----~~~~~~~~~~~l~~g-d~lll~TDGl~e~~~~~~  207 (255)
T 3f79_A          171 ---------------VGLF-----DDATYDDRVMELPPS-FSLSLFSDGILDVLPGAT  207 (255)
T ss_dssp             ----------------CCS-----SCCCCCC---BCCSS-EEEEEECSCCCCCSCC--
T ss_pred             ---------------EEEc-----CCCceEEEEEEECCC-CEEEEECCCcCcccCCCc
Confidence                           2221     123456677888888 999999999999998876


No 22 
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Probab=99.70  E-value=1.2e-15  Score=139.66  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=110.2

Q ss_pred             CceEEEEeccCC-CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 014607           70 GIGVAVSSLKGK-KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGYLK  148 (421)
Q Consensus        70 ~~~~g~~s~~G~-R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~~~  148 (421)
                      ++.+|+.+.... +..+.|.+.+...    ++..+++|+||+|....|.+++..+...+.+.   ...++.+.    +..
T Consensus         3 ~~~~~~~~~p~~~~~v~GD~y~~~~~----~~~~~~~v~Dv~GhG~~Aa~~s~~~~~~l~~~---~~~~p~~i----l~~   71 (193)
T 3zt9_A            3 KLEVGIYTRAREGEIACGDACLVKRV----EGVIFLAVGDGIGHGPEAARAAEIAIASMESS---MNTGLVNI----FQL   71 (193)
T ss_dssp             CCCEEEEEECCTTCSSCSEEEEEEEE----TTEEEEEEEEESSSHHHHHHHHHHHHHHHHHH---TTSCHHHH----HHH
T ss_pred             ccEEEEEEeccCCCCCCCCeEEEEEe----CCEEEEEEEeCCCCCHHHHHHHHHHHHHHHHc---ccCCHHHH----HHH
Confidence            456777766654 5678899887642    45678999999997777778887777776653   12334443    445


Q ss_pred             HhHHHHhcCCCCCCcEEEEEEe--CCeEEEEecCCcEEEEEeCCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCceee
Q 014607          149 TDEEFSKQGLVSGACCVTAFIE--GHDVVVSNLGDCRAVLCRGGVAEALTNDHKAGREDERKRIENKGGYVEFHRGAWRV  226 (421)
Q Consensus       149 ~~~~~~~~~~~~GtT~v~~li~--~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~~rv  226 (421)
                      +|+.+...   .|+|++++.+.  .+++.++|+|+++.|++|+++...+...+.                          
T Consensus        72 ln~~l~~~---~~~t~~~~~id~~~~~l~~~~aGh~~~~l~~~~~~~~l~~~~g--------------------------  122 (193)
T 3zt9_A           72 CHRELRGT---RGAVAALCRVDRRQGLWQAAIVGNIHVKILSAKGIITPLATPG--------------------------  122 (193)
T ss_dssp             HHHHHTTS---SCEEEEEEEEETTTTEEEEEEESSCEEEEEETTEEECCCCBCC--------------------------
T ss_pred             HHHHHhcc---CceEEEEEEEECCCCEEEEEecCCceEEEEcCCcEEEecCCCC--------------------------
Confidence            66666542   47888888876  568999999999999999987665532110                          


Q ss_pred             cCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCHHHH
Q 014607          227 HGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGNQEA  279 (421)
Q Consensus       227 ~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~~ei  279 (421)
                              .+|..     ....++...+++.++ +.|+|+||||+|.++.+++
T Consensus       123 --------~lG~~-----~~~~~~~~~~~l~~g-d~l~l~sDGl~e~~~~~~~  161 (193)
T 3zt9_A          123 --------ILGYN-----YPHQLLIAKGSYQEG-DLFLIHSDGIQEGAVPLAL  161 (193)
T ss_dssp             --------BBTTB-----CCSSCCCEEEECCTT-CEEEEECTTSCTTCSCGGG
T ss_pred             --------ceecc-----CCccceeEEeccCCC-CEEEEECCCCCCccChhhh
Confidence                    12321     112456778899998 8999999999999887654


No 23 
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=99.20  E-value=6.5e-09  Score=105.27  Aligned_cols=158  Identities=14%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             cCceEEEEeccCC--CCCCcceeEEeeccCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 014607           69 SGIGVAVSSLKGK--KKFMEDTHKIISCLHGNSNKSFFGVYDGHGGKMAAEFVAENLHTNIFEMMKNCTGDKEEAVKAGY  146 (421)
Q Consensus        69 ~~~~~g~~s~~G~--R~~nED~~~v~~~~~~~~~~~lfgV~DGhGG~~~a~~as~~l~~~l~~~~~~~~~~~~~~l~~a~  146 (421)
                      .++.+++......  ....-|.|-+...    ++..+++|+|++|-.-.|.+++..+...+...... ..++.+.+    
T Consensus        34 ~~~~~~~~y~P~~~~~~vgGD~y~~~~~----~~~~~~~v~Dv~GhGv~AA~~~~~~~~~l~~~~~~-~~~p~~il----  104 (399)
T 3ke6_A           34 PGADIAAEYLVAAEDTAAGGDWFDALAL----GDRLVLVVGDVVGHGVEAAAVMSQLRTALRMQISA-GYTVVEAL----  104 (399)
T ss_dssp             TTEEEEEEEECSSSSCSCCSEEEEEEEC----SSEEEEEEEECSSCSHHHHHHHHHHHHHHHHHHHT-TCCHHHHH----
T ss_pred             CCeEEEEEEEECCCCCCCCCceEEEEEE----CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhc-CCCHHHHH----
Confidence            4555665544443  2455788877652    22778999999995555555565665555554432 33444444    


Q ss_pred             HHHhHHHHhcCCCCCCcEEEEEEe--CCeEEEEecCCcEEEEEe-CCeeeecCCCCCCCChHHHhhHHhcCCeeeecCCc
Q 014607          147 LKTDEEFSKQGLVSGACCVTAFIE--GHDVVVSNLGDCRAVLCR-GGVAEALTNDHKAGREDERKRIENKGGYVEFHRGA  223 (421)
Q Consensus       147 ~~~~~~~~~~~~~~GtT~v~~li~--~~~l~vanvGDSRa~l~r-~g~~~~LT~DH~~~~~~E~~rI~~~gg~v~~~~g~  223 (421)
                      ..+|+.+......+++|++++.++  .+++.++|+|....|+++ +|+...+..++.+                      
T Consensus       105 ~~ln~~~~~~~~~~~~t~~~~~id~~~~~l~~~~aGh~~~~l~~~~g~~~~l~~~~~~----------------------  162 (399)
T 3ke6_A          105 EAVDRFHKQVPGSKSATMCVGSLDFTSGEFQYCTAGHPPPLLVTADASARYVEPTGAG----------------------  162 (399)
T ss_dssp             HHHHHHGGGSTTCTTCEEEEEEEETTTCEEEEEEESSCCCEEECTTSCEEECCCCSCC----------------------
T ss_pred             HHHHHHHHhcCCCcEEEEEEEEEECCCCEEEEECCCCChhEEEeCCCCEEEeecCCCc----------------------
Confidence            344553333344578888888885  678999999999999998 6777777655422                      


Q ss_pred             eeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCH
Q 014607          224 WRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGN  276 (421)
Q Consensus       224 ~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~  276 (421)
                                 .+|-       ....+...+.|.++ +.|+|+||||.|....
T Consensus       163 -----------plG~-------~~~~~~~~~~l~~G-d~l~l~TDGl~e~~~~  196 (399)
T 3ke6_A          163 -----------PLGS-------GTGFPVRSEVLNIG-DAILFYTDGLIERPGR  196 (399)
T ss_dssp             -----------CTTS-------SCCCCCEEEECCTT-CEEEEECTTTTSCTTC
T ss_pred             -----------ceEC-------CCCceeEEEEECCC-CEEEEECCCcccCCCC
Confidence                       1221       11344567889998 8999999999998765


No 24 
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.42  E-value=5.7e-06  Score=82.79  Aligned_cols=161  Identities=17%  Similarity=0.136  Sum_probs=92.3

Q ss_pred             eecCceEEEEeccCCCCCCcceeEEeeccCCCCCceEEEEEeCCC-cchHHHHHHHHHHHHHHHHHhhC-------CCCH
Q 014607           67 SFSGIGVAVSSLKGKKKFMEDTHKIISCLHGNSNKSFFGVYDGHG-GKMAAEFVAENLHTNIFEMMKNC-------TGDK  138 (421)
Q Consensus        67 ~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~lfgV~DGhG-G~~~a~~as~~l~~~l~~~~~~~-------~~~~  138 (421)
                      ...++.++...... ....-|.+-+...   ..+..+++|+|+.| |-.++-. +-.+...+...+...       ..++
T Consensus       173 ~~~~~~~~~~~~p~-~~vgGD~yd~~~~---~~~~~~~~i~Dv~GhGv~aa~~-~~~~~~~~~~~~~~~~~~~~~~~~~p  247 (394)
T 3eq2_A          173 SIEGLEFSHRIIPS-LYLSGDFVDYFRV---DERRVAFYLADVSGHGASSAFV-TVLLKFMTTRLLYESRRNGTLPEFKP  247 (394)
T ss_dssp             EETTEEEEEEEC------CCCEEECCEE---TTTEEEEEEEEESSCSTTTHHH-HHHHHHHHHHHHHHSCSSCSSSSCCH
T ss_pred             CCCCeEEEEEeccc-hhcCccEEeEEEe---CCCcEEEEEEECCCCChHHHHH-HHHHHHHHHHHHHhhhccCCcccCCH
Confidence            44555665544332 3445687755432   24567899999888 5554433 333333333332221       1134


Q ss_pred             HHHHHHHHHHHhHHHHhcCCCCCCcEEEEEEe--CCeEEEEecCCcE-EEEEeCCeeeecCCCCCCCChHHHhhHHhcCC
Q 014607          139 EEAVKAGYLKTDEEFSKQGLVSGACCVTAFIE--GHDVVVSNLGDCR-AVLCRGGVAEALTNDHKAGREDERKRIENKGG  215 (421)
Q Consensus       139 ~~~l~~a~~~~~~~~~~~~~~~GtT~v~~li~--~~~l~vanvGDSR-a~l~r~g~~~~LT~DH~~~~~~E~~rI~~~gg  215 (421)
                      .+    .+..+|+.+......+..|++.+++.  .+++.++|.|-.. .++.++|.+..|.....|              
T Consensus       248 ~~----~l~~ln~~l~~~~~~~~~t~~~~~~d~~~~~l~~~~aGh~p~~~~~~~g~~~~l~~~~~p--------------  309 (394)
T 3eq2_A          248 SE----VLAHINRGLINTKLGKHVTMLGGVIDLEKNSLTYSIGGHLPLPVLFVEGQAGYLEGRGLP--------------  309 (394)
T ss_dssp             HH----HHHHHHHHHHHTTCCCCEEEEEEEEETTTTEEEEEECSSSCCCEEEETTEEEECCCC--C--------------
T ss_pred             HH----HHHHHHHHHhccCcCcEEEEEEEEEECCCCEEEEEcCCCCCCcEEecCCceEecCCCCce--------------
Confidence            43    34456666665555567888888885  5789999999854 677788887776543222              


Q ss_pred             eeeecCCceeecCccccceecccccccccccccCceEEEEecCCCeEEEEEccCCCCCCCH
Q 014607          216 YVEFHRGAWRVHGILAVSRSIGNAHLKNWVLAEPDTKILNFSSDMEFLVLASDGFWDEVGN  276 (421)
Q Consensus       216 ~v~~~~g~~rv~g~l~vtRalGd~~~k~~v~~~Pdi~~~~l~~~dd~lvLaSDGlwD~ls~  276 (421)
                                          +|-.     -........+.+.++ +.|+|.||||.|....
T Consensus       310 --------------------lG~~-----~~~~~~~~~~~l~~g-d~l~l~TDG~~e~~~~  344 (394)
T 3eq2_A          310 --------------------VGLF-----DDATYDDRVMELPPS-FSLSLFSDGILDVLPG  344 (394)
T ss_dssp             --------------------CSCC-----CCC--CCEEEECCSS-CEEEECSSCCCC----
T ss_pred             --------------------eEec-----CCCceEEEEEEeCCC-CEEEEECCCcccccCc
Confidence                                2221     012334567889998 8999999999997543


No 25 
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=22.63  E-value=4.9  Score=41.66  Aligned_cols=25  Identities=4%  Similarity=-0.164  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCcEEE
Q 014607          386 GLMAACKELANLAMSRGSLDDITVM  410 (421)
Q Consensus       386 ~~~~a~~~lv~~a~~~G~~DnITv~  410 (421)
                      +.+.+++.|++.|++.|+.||++.+
T Consensus       102 ~~~~~~~~l~~~~~~~~~~d~~~~~  126 (543)
T 3c4z_A          102 LRPQKAQALRAAYLEPQAQLFCSFL  126 (543)
T ss_dssp             THHHHHHHHHHHHTSTTCTTCCTTS
T ss_pred             hHHHHHHHHHHHhhCchhhhhhccC
Confidence            5677899999999999999999876


Done!