BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014608
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 13/253 (5%)
Query: 9 RLMIVSDLDHTMVDHHDAENLSLLRFNALWEAHYRRDSLLVFSTGRSPTLYKQLRKEKPM 68
+L+++SDLD+T V A L + R + L ++TGRS ++L+K+ +
Sbjct: 3 QLLLISDLDNTWVGDQQA-----LEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGL 57
Query: 69 LTPDITIMSVGTEITYGDAMVPDNGWVEVLNQKWDKKIVTEEASRFPELKLQSETEQRPH 128
+ PD + +VG+EI + + + D W + L++ W + I+ A F LK QS EQ P
Sbjct: 58 MEPDYWLTAVGSEIYHPEGL--DQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPW 115
Query: 129 KVSFYVDKDKAQTVTQKLSEIFKNRGLDVKIIYSGGMDLDILPQGAGKGQALAYLLRKFK 188
K+S+++D TV +L+E+ K G+ V++I+S G D+D+LPQ + KG A YL +
Sbjct: 116 KISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLA 175
Query: 189 CEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEELLQWHAANAKNNPKLTHATERC 248
E P+ TLVCGDSGND LF GV+V NAQ ELL W+ + + + A
Sbjct: 176 ME---PSQTLVCGDSGNDIGLFET-SARGVIVRNAQPELLHWY--DQWGDSRHYRAQSSH 229
Query: 249 AAGIIQAIGHFKL 261
A I++AI HF
Sbjct: 230 AGAILEAIAHFDF 242
>pdb|1RLM|A Chain A, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|B Chain B, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|C Chain C, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|D Chain D, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLT|A Chain A, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|B Chain B, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|C Chain C, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|D Chain D, Transition State Analogue Of Ybiv From E. Coli K12
Length = 271
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 52/278 (18%)
Query: 11 MIVSDLDHTMVDHHDAENLSLLRFNALWEAHYRRDSLLVFSTGRSPTLYKQLRKEKPMLT 70
+IV+D+D T ++ DA+ + RF A ++ +R V ++G Y QL P L
Sbjct: 5 VIVTDMDGTFLN--DAKTYNQPRFMAQYQELKKRGIKFVVASGNQ---YYQLISFFPELK 59
Query: 71 PDITIMSV--------GTEITYGDAMVPDNGWV--EVLNQK--------WDKKIVTEEAS 112
+I+ ++ G ++ +G+ ++ V E+L K V+E A
Sbjct: 60 DEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAP 119
Query: 113 ------------RFPELKLQSETEQRPHKVSFYVDKDKAQTVTQKLSEIFKNRGLD--VK 158
R +K E + K S + ++ V KL + LD +K
Sbjct: 120 EAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKL-----HVALDGIMK 174
Query: 159 IIYSGGMDLDILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDSGNDAELFSIPEVYGV 218
+ SG +D++ G K ++ LL+++ P N + GDSGNDAE+ + Y
Sbjct: 175 PVTSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEMLKMAR-YSF 230
Query: 219 MVSNAQEELLQWHAANAKNNPKLTHATERCAAGIIQAI 256
+ NA E + Q +N A +IQA+
Sbjct: 231 AMGNAAENIKQIARYATDDN------NHEGALNVIQAV 262
>pdb|3GYG|A Chain A, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|B Chain B, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|C Chain C, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
pdb|3GYG|D Chain D, Crystal Structure Of Yhjk (Haloacid Dehalogenase-Like
Hydrolase Protein) From Bacillus Subtilis
Length = 289
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 29/183 (15%)
Query: 71 PDITIMSVGTEITY---GDAMVPDNGWVEVLNQKWDKKIVTEEASRFPE-----LKLQSE 122
P +GTEITY + DN W +N+ + K+ V + + E L Q++
Sbjct: 88 PHFIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQTQ 147
Query: 123 TEQRPHKVSFY------VDKDKAQTVTQKLSEIFKNRGLDVKIIYSGGM--------DLD 168
+ +K +FY ++ K +K+ E + G+ V I + D+D
Sbjct: 148 LGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEY---GVSVNINRCNPLAGDPEDSYDVD 204
Query: 169 ILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEELL 228
+P G GK + + + L K+ + + GDSGND G ++ NA +E
Sbjct: 205 FIPIGTGKNEIVTFXLEKYNLNTE---RAIAFGDSGNDVRXLQTVGN-GYLLKNATQEAK 260
Query: 229 QWH 231
H
Sbjct: 261 NLH 263
>pdb|1RLO|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|C Chain C, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|D Chain D, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
Length = 271
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 113/278 (40%), Gaps = 52/278 (18%)
Query: 11 MIVSDLDHTMVDHHDAENLSLLRFNALWEAHYRRDSLLVFSTGRSPTLYKQLRKEKPMLT 70
+IV+ +D T ++ DA+ + RF A ++ +R V ++G Y QL P L
Sbjct: 5 VIVTXMDGTFLN--DAKTYNQPRFMAQYQELKKRGIKFVVASGNQ---YYQLISFFPELK 59
Query: 71 PDITIMSV--------GTEITYGDAMVPDNGWV--EVLNQK--------WDKKIVTEEAS 112
+I+ ++ G ++ +G+ ++ V E+L K V+E A
Sbjct: 60 DEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAP 119
Query: 113 ------------RFPELKLQSETEQRPHKVSFYVDKDKAQTVTQKLSEIFKNRGLD--VK 158
R +K E + K S + ++ V KL + LD +K
Sbjct: 120 EAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKL-----HVALDGIMK 174
Query: 159 IIYSGGMDLDILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDSGNDAELFSIPEVYGV 218
+ SG +D++ G K ++ LL+++ P N + GDSGNDAE+ + Y
Sbjct: 175 PVTSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEMLKMAR-YSF 230
Query: 219 MVSNAQEELLQWHAANAKNNPKLTHATERCAAGIIQAI 256
+ NA E + Q +N A +IQA+
Sbjct: 231 AMGNAAENIKQIARYATDDN------NHEGALNVIQAV 262
>pdb|2HF2|A Chain A, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
pdb|2HF2|B Chain B, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
Length = 283
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 52/278 (18%)
Query: 11 MIVSDLDHTMVDHHDAENLSLLRFNALWEAHYRRDSLLVFSTGRSPTLYKQLRKEKPMLT 70
+IV+D D T ++ DA+ + RF A ++ +R V ++ Y QL P L
Sbjct: 7 VIVTDXDGTFLN--DAKTYNQPRFXAQYQELKKRGIKFVVASNNQ---YYQLISFFPELK 61
Query: 71 PDITIMSV--------GTEITYGDAMVPDNGWV--EVLNQK--------WDKKIVTEEAS 112
+I+ ++ G ++ +G+ ++ V E+L K V+E A
Sbjct: 62 DEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAP 121
Query: 113 ------------RFPELKLQSETEQRPHKVSFYVDKDKAQTVTQKLSEIFKNRGLD--VK 158
R +K E + K S + ++ V KL + LD K
Sbjct: 122 EAFVALXAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKL-----HVALDGIXK 176
Query: 159 IIYSGGMDLDILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDSGNDAELFSIPEVYGV 218
+ SG +D++ G K ++ LL+++ P N + GDSGNDAE Y
Sbjct: 177 PVTSGFGFIDLIIPGLHKANGISRLLKRWDLS---PQNVVAIGDSGNDAEXLKXAR-YSF 232
Query: 219 MVSNAQEELLQWHAANAKNNPKLTHATERCAAGIIQAI 256
NA E + Q +N A +IQA+
Sbjct: 233 AXGNAAENIKQIARYATDDN------NHEGALNVIQAV 264
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 169 ILPQGAGKGQALAYLLRKFK-CEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEEL 227
+L AGK QA +++ ++ GK PT TL GD NDA L + + Y V+V E
Sbjct: 183 VLDASAGKDQAANWIIATYQQLSGKRPT-TLGLGDGPNDAPLLEVMD-YAVIVKGLNREG 240
Query: 228 LQWHAANAKNNPKLTHATER-CAAGIIQAIGHF 259
+ H +P T+R G + + HF
Sbjct: 241 VHLH----DEDPARVWRTQREGPEGWREGLDHF 269
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 145 KLSEIFKNRGLDV-KIIYSGGMDLDILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDS 203
+L EI R DV K+ S L+I+P+ KG+AL +L + + + +V GD+
Sbjct: 159 ELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKE---EIVVFGDN 215
Query: 204 GNDAELF 210
ND +F
Sbjct: 216 ENDLFMF 222
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 176 KGQALAYLLRKFKCEGKVPTNTLVCGDSGNDAELFSIPEVYGVMVSNAQEELLQWHAANA 235
KG+ L L R TNTLV GD ND F + + NA+ E+L+ HA +
Sbjct: 143 KGEXLLVLQRLLNIS---KTNTLVVGDGANDLSXFKHAHIK--IAFNAK-EVLKQHATHC 196
Query: 236 KNNPKL 241
N P L
Sbjct: 197 INEPDL 202
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 128 HKVSFYVDKDKAQTVTQK----LSEIFKNRGLDVKIIYSGGMDLDILPQGAGKGQALAYL 183
++ FY + DK + + QK L + F +GL I G + D+ P G K Y
Sbjct: 140 ERIEFY-ELDKKENIRQKFVADLRKEFAGKGLTFSI--GGQISFDVFPDGWDK----RYC 192
Query: 184 LRKFKCEGKVPTNTLVCGD----SGNDAELFSIPEVYGVMVSNAQE 225
LR + +G GD GND E+F+ P G V+ ++
Sbjct: 193 LRHVENDGY--KTIYFFGDKTXPGGNDHEIFTDPRTXGYSVTAPED 236
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 349 KQFRVWVDRVLSTEIGPGTWLVKFHKWELSGEERACSI 386
K++++W+ + G G + + HKW+LSG ERA S+
Sbjct: 268 KKYKIWMH--VDAAWGGGLLMSRKHKWKLSGVERANSV 303
>pdb|1L6R|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
pdb|1L6R|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 0175
(Apc0014)
Length = 227
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 85 GDAMVPDNGWVEVLNQKWDKKIVTEEASRFPELKLQSETEQRPHKVSFYVDKDKAQTVTQ 144
G M ++G ++ EE S+ ++ R F +D + V +
Sbjct: 70 GGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRK 129
Query: 145 KLSEIFKNRGLDVKIIYSGGMDLDILPQGAGKGQALAYLLRKFKCEGKVPTNTLVCGDSG 204
+ ++RG +I+ G ++ +G K A+ L + E LV GDS
Sbjct: 130 EA----ESRGF---VIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLE---YDEILVIGDSN 179
Query: 205 NDAELFSIP 213
ND +F +P
Sbjct: 180 NDMPMFQLP 188
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 108 TEEASRFPELKLQSETEQRPHK-VSFYVDKDKAQTVTQKLSEIFKNRGLDVKIIYSGGMD 166
T+ RF +K+++ E P VS Y+ KD KLS + ++ ++I+ +
Sbjct: 216 TKNGLRF-AVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVP 274
Query: 167 LDILPQGAGKGQALAYLLRKFKCEGKVP 194
L +L G G LA L + KC P
Sbjct: 275 LVLLSSGVGVTPLLAMLEEQVKCNPNRP 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,312,083
Number of Sequences: 62578
Number of extensions: 555478
Number of successful extensions: 1282
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 20
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)