BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014613
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis
thaliana GN=VPS9A PE=1 SV=1
Length = 520
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/399 (62%), Positives = 298/399 (74%), Gaps = 6/399 (1%)
Query: 1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS ++V DE+L +K++LVQ
Sbjct: 57 MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 116
Query: 61 QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176
Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
NEN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236
Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
ISNIDA+++S++E+EFE+NMESA+A +SGL D + Q ++ K Q
Sbjct: 237 ISNIDAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQS 292
Query: 241 VNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
+N +E S ++ + P+ K S+S+LENKGAT LLK+ + S+VF
Sbjct: 293 LNPKRENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVF 351
Query: 301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVE 360
QEYPY+FA GDL I DVE LLN+YKQLVFKYVCL+KGLG S PSS P Q
Sbjct: 352 QEYPYIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFN 410
Query: 361 TMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 399
T K E+H+R + + K+T + D + L+ E V
Sbjct: 411 TSKESEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449
>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps901 PE=1 SV=3
Length = 572
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 18/205 (8%)
Query: 11 WAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIAL 58
WA S+ E+D+A EG+EK V+ +L+T +F+ IP DDV+ D LSEK+ L
Sbjct: 172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231
Query: 59 VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 118
Q ++ ENLDIK + + LA EL++IN Y APRDK++C+LNCCKVI + L N
Sbjct: 232 FQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV 290
Query: 119 IALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 178
AD F+P+LI+V ++A P L SN+ YIQR+R +L GE Y+ + ++ A
Sbjct: 291 -----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAM 345
Query: 179 SFISNIDAQALSMEESEFERNMESA 203
SFI +D +L++ E EF +E +
Sbjct: 346 SFIETLDCSSLTITEEEFNAQIEKS 370
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2
Length = 708
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 17 EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 70
E ++ + +EKY+MT+L+ VF DD K D + ++I + Q P N DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478
Query: 71 KASFQNETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGA 128
E S ++ + I M + PRDKL CI C K I N + I NE P A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASA 529
Query: 129 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 187
D+FLP LIY+ +K NPP+L SN+ YI R+ SRL+ GE Y+FTN+ A +FI +DAQ
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589
Query: 188 ALSMEESEFERNM 200
+L++ + +F+R M
Sbjct: 590 SLNLSQEDFDRYM 602
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1
Length = 492
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 10/189 (5%)
Query: 17 EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
E ++ + +EKY+MT+L+ VF DD K D + ++I + +V P+ L + + +
Sbjct: 203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261
Query: 76 -NETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
E S ++ + I M + PRDKL CI C K I N + I NE P AD+FL
Sbjct: 262 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASADDFL 317
Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
P LIY+ +K NPP+L SN+ YI R+ SRL+ GE Y+FTN+ A +FI +DAQ+L++
Sbjct: 318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377
Query: 192 EESEFERNM 200
+ +F+R M
Sbjct: 378 SQEDFDRYM 386
>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus
musculus GN=Gapvd1 PE=1 SV=2
Length = 1458
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 10 LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
+W SEE+L A +E+ VM ++F F D D+ D+ L E I + + V +
Sbjct: 1281 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1340
Query: 68 -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
L I + E W AQ E++ I+ YK PRDK+ CIL C I NLL S+A ++ P
Sbjct: 1341 ALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1397
Query: 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
GAD+F+PVL++V IKANPP L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1398 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1455
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos
taurus GN=GAPVD1 PE=2 SV=1
Length = 1413
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 10 LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
+W SEE+L A +E+ VM ++F F D D+ D+ L E I + + V +
Sbjct: 1236 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1295
Query: 68 -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
L I + E W AQ E++ I+ YK PRDK+ CIL C I NLL S+A ++ P
Sbjct: 1296 ALQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1352
Query: 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
GAD+F+PVL++V IKANPP L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1353 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1410
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1
OS=Homo sapiens GN=GAPVD1 PE=1 SV=2
Length = 1478
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 10 LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
+W SEE+L A +E+ VM ++F F D D+ D+ L E I + + V +
Sbjct: 1301 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1360
Query: 68 -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
L I + E W AQ E++ I+ YK PRDK+ CIL C I NLL S+A ++ P
Sbjct: 1361 ALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1417
Query: 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
GAD+F+PVL++V IKANPP L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1418 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1475
>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1
OS=Xenopus laevis GN=gapvd1 PE=2 SV=1
Length = 1452
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 10 LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
+W SEE+L A +E+ +M ++F F D D+ D+ L E I + + V +
Sbjct: 1275 IWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHR 1334
Query: 68 -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
L I + E W AQ E++ I+ YK PRDK+ CIL C I NLL S+A + P
Sbjct: 1335 ALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVP 1391
Query: 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
GAD+F+PVL++V IKANP L S + YI + +RL+GE +Y++ +A FI ID
Sbjct: 1392 GADDFVPVLVFVLIKANPTYLLSTVQYISSF-YSNRLIGEESYWWMQFTAAVEFIKTID 1449
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1
Length = 491
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 112/189 (59%), Gaps = 10/189 (5%)
Query: 17 EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
E+++ + +EK++MT+L+ VF DD K D + ++I + +V P+ L + + +
Sbjct: 202 EKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 260
Query: 76 -NETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
E S ++ + I M + PRDKL CI C K I N + I NE P AD+FL
Sbjct: 261 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKNE-PASADDFL 316
Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
P LIY+ +K NPP+L SN+ YI R+ SRL+ GE Y+FTN+ A +FI +DAQ+L++
Sbjct: 317 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 376
Query: 192 EESEFERNM 200
+ +F+R M
Sbjct: 377 SQEDFDRYM 385
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1
SV=2
Length = 451
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 5 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS---------IPD----DVKTDEQ 51
F + + ++ +A EG+EK +M KL++R F+ + D D+ D+
Sbjct: 116 FTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDT 175
Query: 52 LSEKIALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCK 108
L EKI + F+ P LDI + N LA KEL KIN +K+PRDK+VC+LN K
Sbjct: 176 LLEKIRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASK 234
Query: 109 VINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAA 168
VI LL + + N GAD F+PVLIY +K L SN+ YI+R+R + GE
Sbjct: 235 VIFGLLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEE 290
Query: 169 YFFTNMLSAESFISNIDAQALSMEESE-----FERNME 201
Y+ +++ +A +FI N+ ++L++E+ E ++RN +
Sbjct: 291 YYLSSLQAALNFIMNLTERSLTIEDHEDFEEAYQRNFK 328
>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
melanogaster GN=CG1657 PE=1 SV=2
Length = 1712
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 16 EEELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKA 72
E ++D+A +E+ ++ +++ +V F + DV DE LS I +Q+FV P + L I
Sbjct: 1542 EWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIAQ 1601
Query: 73 SFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
+ E W AQ++L + YK PR+KL CI+NC I +LL +S + P AD+ L
Sbjct: 1602 EYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRV----PAADDLL 1657
Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
PVLIYV I ANPP L S + YI + + +L GE +++T S FI +D
Sbjct: 1658 PVLIYVVIMANPPYLLSTVEYISCFLGK-KLEGEDEFYWTLFGSVVKFIKTMD 1709
>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2
Length = 1774
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 18 ELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKASF 74
++D+A E +E+ ++ ++ +V F + DV D LS I +Q+FV P + L I +
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEY 1665
Query: 75 QNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPV 134
E W AQ++L + YK PR+KL CI+NC I +LL + + P AD+ LPV
Sbjct: 1666 LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRV----PAADDLLPV 1721
Query: 135 LIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
LIYV I ANPP L S + YI + + +L GE +++T S FI +D
Sbjct: 1722 LIYVVIMANPPYLLSTVEYISCFLGR-KLDGENEFYWTLFGSVVKFIKTMD 1771
>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans
GN=rme-6 PE=1 SV=2
Length = 1093
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
Query: 11 WAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN-- 67
W ++ + A +E+YV+ ++ F D D D+ L IA V V P N
Sbjct: 919 WNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDF 978
Query: 68 LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPG 127
L I E W AQ EL +++Y +DKL C++ CC VINNL+ +++
Sbjct: 979 LKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDVINNLV---ALSSKNAVAS 1035
Query: 128 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 184
AD+ PVL++V IKANP L SN+ +++ + G AY++ N SA +I I
Sbjct: 1036 ADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYIKTI 1092
>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
GN=rme-6 PE=3 SV=1
Length = 1104
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 11 WAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD---DVKTDEQLSEKIALVQQFVRP-- 65
W +E + A +E++VM ++ F P+ D K D+ L I V P
Sbjct: 930 WNFATESMIARAMTTMERFVMFAVYEIAFW--PNREMDQKKDKLLQSVIGKASSSVTPVH 987
Query: 66 ENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENP 125
E L I E W AQ EL ++ Y ++KL C++ CC VINNL+ +++
Sbjct: 988 EALKIPEHLLGEAPWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLV---ALSSKNAV 1044
Query: 126 PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 184
AD+ PVL++V IKANP L SNL +I+ + G AY++ N SA +I I
Sbjct: 1045 ASADDLTPVLVFVIIKANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYIKTI 1103
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 OS=Mus musculus GN=Rin2 PE=1 SV=3
Length = 903
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 14/194 (7%)
Query: 9 PLWAGCSEEELDSAGE-GLEKYVMTKLFTRVFASIPDDVKTD---EQLSEKIALVQQFVR 64
P+ + E+++D E + K ++ L V A + D D +QL E + LV+Q
Sbjct: 586 PIESLIPEDQIDVVLEKAMHKCILKPLKGHVEAMLKDFHTADGSWKQLKENLQLVRQ-RN 644
Query: 65 PENLDIKASFQNETSWLLAQKELQKINMYK--APRDKLVCILNCCKVINNLLLNASIALN 122
P+ L + A + L + +L+ + M K +P K++ +L CK+I ++ N S +
Sbjct: 645 PQELGVFAPTPDLME--LEKIKLKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMY 702
Query: 123 ENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFIS 182
GAD+FLPVL YV + + +L + + Y+ S L GE Y+ T+ A S I
Sbjct: 703 ----GADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLIK 758
Query: 183 NI-DAQALSMEESE 195
N + QA + SE
Sbjct: 759 NFQEEQAARLLSSE 772
>sp|Q8WYP3|RIN2_HUMAN Ras and Rab interactor 2 OS=Homo sapiens GN=RIN2 PE=1 SV=1
Length = 895
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 9 PLWAGCSEEELDSAGE-GLEKYVMTKLFTRVFASIPDDVKTD---EQLSEKIALVQQFVR 64
P+ + E+++D E + K ++ L V A + D D +QL E + LV+Q
Sbjct: 577 PIESLIPEDQIDVVLEKAMHKCILKPLKGHVEAMLKDFHMADGSWKQLKENLQLVRQ-RN 635
Query: 65 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 124
P+ L + A + + + + +P K++ +L CK+I ++ N S +
Sbjct: 636 PQELGVFAPTPDFVDVEKIKVKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMY-- 693
Query: 125 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 184
GAD+FLPVL YV + + +L + + Y+ S L GE Y+ T+ A S I N
Sbjct: 694 --GADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLIKNF 751
Query: 185 -DAQALSMEESE 195
+ QA + SE
Sbjct: 752 QEEQAARLLSSE 763
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 OS=Mus musculus GN=Rin3 PE=2 SV=2
Length = 980
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 84 QKELQKI-NMYKA--PRDKLVCILNCCKVINNLLLNASIALNE--NPPGADEFLPVLIYV 138
+K LQK+ +M+KA P K+ +L CK+I + S+AL P GAD+FLPVL+YV
Sbjct: 737 EKILQKLTSMHKAYSPGKKISILLKTCKLIYD-----SMALGNPGKPYGADDFLPVLMYV 791
Query: 139 TIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
++N ++ N+ Y+ + +GE +Y+ T A I N D
Sbjct: 792 LARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYD 838
>sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN=RIN3 PE=1 SV=4
Length = 985
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 82 LAQKELQKI-NMYKA--PRDKLVCILNCCKVINNLLLNASIALNE--NPPGADEFLPVLI 136
+ +K LQK +M+KA P K+ +L CK+I + S+AL P GAD+FLPVL+
Sbjct: 738 MMEKILQKFTSMHKAYSPEKKISILLKTCKLIYD-----SMALGNPGKPYGADDFLPVLM 792
Query: 137 YVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
YV ++N ++ N+ Y+ + +GE +Y+ T A I + D
Sbjct: 793 YVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKSYD 841
>sp|Q8C190|VP9D1_MOUSE VPS9 domain-containing protein 1 OS=Mus musculus GN=Vps9d1 PE=2
SV=1
Length = 649
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 80 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNL---LLNASIALNEN---PP----GAD 129
+ A +EL + + P+ KL CI+ +VI A A E PP GAD
Sbjct: 528 YCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARPEGESQPPAAAIGAD 587
Query: 130 EFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 181
+ LP+L +V +++ PQL S ++ + + L+GE Y T++ SA S++
Sbjct: 588 DLLPILSFVVLRSGLPQLVSECAALEEFTHEGYLIGEEGYCLTSLQSALSYV 639
>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii
GN=ANKRD27 PE=2 SV=1
Length = 1050
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 7/236 (2%)
Query: 16 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
E +++ + +E YV +++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEIYVHHEIYDLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 76 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 135
A++EL ++N +P+ KLVC+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELAQLNKCTSPQQKLVCLR---KVVQLITQSPSQRVNLETMCADDLLSVL 316
Query: 136 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESE 195
+Y+ +K P +NL YI+ +R S E Y T+ +A +I A E
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSSAKDELGYCLTSFEAAIEYIRQGSLSAKPPESEG 376
Query: 196 FERNMESAQ--ALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEH 249
F + Q +LLS +++ ++ S Q VE+L+ + ++ ++ H
Sbjct: 377 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDAVQKMCH 432
>sp|Q9Y2B5|VP9D1_HUMAN VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=2
SV=2
Length = 631
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 65 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 124
P+N + K + + A +EL + + P+ KL CI+ ++I +
Sbjct: 496 PQNPEAKGA--TGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEAT 553
Query: 125 P-----------PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTN 173
P GAD+ LP+L +V +++ PQL S ++ + + L+GE Y T+
Sbjct: 554 PQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTS 613
Query: 174 MLSAESFI 181
+ SA S++
Sbjct: 614 LQSALSYV 621
>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens
GN=ANKRD27 PE=1 SV=2
Length = 1050
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 7/236 (2%)
Query: 16 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
E +++ + +E YV +++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 76 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 135
A++EL ++N +P+ KLVC+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELAQLNKCTSPQQKLVCLR---KVVQLITQSPSQRVNLETMCADDLLSVL 316
Query: 136 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESE 195
+Y+ +K P +NL YI+ +R S E Y T+ +A +I A E
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYIRQGSLSAKPPESEG 376
Query: 196 FERNMESAQ--ALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEH 249
F + Q +LLS +++ ++ S Q VE+L+ + ++ ++ H
Sbjct: 377 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQKMCH 432
>sp|Q3UMR0|ANR27_MOUSE Ankyrin repeat domain-containing protein 27 OS=Mus musculus
GN=Ankrd27 PE=1 SV=2
Length = 1048
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 16 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
E +++ + +E YV ++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEMYVHHDIYDLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 76 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 135
A++EL ++N +P+ KL+C+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELGQLNKCTSPQQKLLCLR---KVVQLMTQSPSQRVNLETMCADDLLSVL 316
Query: 136 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 181
+Y+ +K P +NL YI+ +R S E Y T++ +A +I
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSSAKDELGYCLTSVEAAIEYI 362
>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN=Rin1 PE=1 SV=1
Length = 763
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 84 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 143
QK LQ + Y +P ++ +L CK++ L + + EN GADEFLP+L V + +
Sbjct: 486 QKLLQLLRAY-SPSAQVKWLLQACKLLYTALKSQA---GENA-GADEFLPLLSLVLAQCD 540
Query: 144 PPQLHSNLLYIQRYRRQSRLVGEAAYFFT 172
P L Y+ + L GE Y+ T
Sbjct: 541 LPDLLLEAEYMSELLEPTLLTGEGGYYLT 569
>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus GN=Rin1 PE=2 SV=2
Length = 774
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 84 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 143
QK LQ + Y +P ++ +L CK++ L + EN GADEFLP+L V + +
Sbjct: 497 QKLLQLLRAY-SPSAQIKWLLQACKLLYTALKTQA---GENA-GADEFLPLLSLVLAQCD 551
Query: 144 PPQLHSNLLYIQRYRRQSRLVGEAAYFFT 172
P L Y+ + L GE Y+ T
Sbjct: 552 LPDLLLEAEYMSELLEPTLLTGEGGYYLT 580
>sp|Q6ZS11|RINL_HUMAN Ras and Rab interactor-like protein OS=Homo sapiens GN=RINL PE=2
SV=1
Length = 452
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 84 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 143
+ L ++ APR K+ +L C+ + L N++P GAD FLP L I +
Sbjct: 297 HERLAHLHAACAPRRKVALLLEVCRDVYAGLARGE---NQDPLGADAFLPALTEELIWS- 352
Query: 144 PPQLHSNLL---YIQRYRRQSRLVGEAAYFFTNMLSAESFISN 183
P + L ++ L GEA Y+ T A I++
Sbjct: 353 -PDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALHHIAH 394
>sp|O94388|VPS92_SCHPO Vacuolar protein sorting-associated protein 9b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps902 PE=1 SV=1
Length = 402
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 20 DSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIA------LVQQFVRPENLDIKA 72
D + +E V L+ R+F S D D+ L + IA L+ P++ +
Sbjct: 112 DEWMDQIEDIVCEYLYDRIFCLSTSTDAAKDDLLKKFIASEEKKELINCIPIPDDEKLTN 171
Query: 73 SFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
+ A E PR K+ N +N+ +LNAS L + AD L
Sbjct: 172 RLHEVSEAFFALDEQH------TPRSKI----NTFMTVNSSILNAS-QLPQEELNADSLL 220
Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 181
+ IY + L S+L ++ R+R L GE Y T +A +FI
Sbjct: 221 NLTIYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYCLTTFEAALTFI 269
>sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN=RIN1 PE=1 SV=4
Length = 783
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 84 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN-PPGADEFLPVLIYVTIKA 142
QK LQ + Y +P ++ +L CK LL ++ E GADEFLP+L V
Sbjct: 497 QKLLQLLRTY-SPSAQVKRLLQACK-----LLYMALRTQEGEGAGADEFLPLLSLVLAHC 550
Query: 143 NPPQLHSNLLYIQRYRRQSRLVGEAAYFFT 172
+ P+L Y+ S L GE Y+ T
Sbjct: 551 DLPELLLEAEYMSELLEPSLLTGEGGYYLT 580
>sp|Q8MQW8|SPRI_DROME Protein sprint OS=Drosophila melanogaster GN=spri PE=2 SV=2
Length = 1790
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 80 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 139
W L + EL P DKL L + + + +A+ GAD+FLPVL+YV
Sbjct: 1576 WRLQEAEL--------PLDKLELFL----CVISTVFDATGCPRGQQLGADDFLPVLVYVV 1623
Query: 140 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSA 177
K ++ + + L GE Y+ T + SA
Sbjct: 1624 AKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSA 1661
>sp|Q8NMZ9|TIG_CORGL Trigger factor OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=tig
PE=3 SV=1
Length = 449
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 262 KKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYL---FAQVG------- 311
K + AK E + L+ E+KG + E + +E P L FAQ+
Sbjct: 201 KALIGAKKDETVEFTSELANGEHKGKEAQISVEITATKQRELPELDDEFAQLASEFDTIE 260
Query: 312 ---DLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEH 368
+ T+SDVE N + + L+ LG A +LP S++ Q Q+ + H
Sbjct: 261 ELRESTVSDVEAKQKNEQAAAIRDEVLAAALGEADFALPQSIVDEQAHSQLHQLLGELAH 320
Query: 369 KRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQL 403
LN E++ T E D N + E+ V +QL
Sbjct: 321 DDAALNSLLEAQGTTREEFDKKN--VEDAEKAVRTQL 355
>sp|A4QGE8|TIG_CORGB Trigger factor OS=Corynebacterium glutamicum (strain R) GN=tig PE=3
SV=1
Length = 449
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 262 KKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYL---FAQVG------- 311
K + AK E + L+ E+KG + E + +E P L FAQ+
Sbjct: 201 KALIGAKKDETVEFTSELANGEHKGKEAQISVEITATKQRELPELDDEFAQLASEFDTIE 260
Query: 312 ---DLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEH 368
+ T+SDVE N + + L+ LG A +LP S++ Q Q+ + H
Sbjct: 261 ELRESTVSDVEAKQKNEQAAAIRDEVLAAALGEADFALPQSIVDEQAHSQLHQLLGELAH 320
Query: 369 KRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQL 403
LN E++ T E D N + E+ V +QL
Sbjct: 321 DDAALNSLLEAQGTTREEFDKKN--VEDAEKAVRTQL 355
>sp|Q02866|MUK1_YEAST Protein MUK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MUK1 PE=1 SV=1
Length = 612
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 107 CKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGE 166
C+ I LL I D++L +LIY I P + N +I+ +R + +LV
Sbjct: 331 CEKIKALLKLHEIMTYSQEMSNDDYLSLLIYYIITIVPRDIFLNAEFIRLFRYKKKLVET 390
Query: 167 AAYFFTNMLSAESFISNIDAQALSME 192
++ TN+ +A F+ + S E
Sbjct: 391 ESFALTNLEAALVFVEGLTKNDFSNE 416
>sp|Q86TU6|CN070_HUMAN Putative uncharacterized protein encoded by LINC00523 OS=Homo
sapiens GN=LINC00523 PE=5 SV=1
Length = 105
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 189 LSMEESEFERNMESAQALLSGLSAD--MDGLSNQNDESEGQISVEQLIQSKHQGVNSTKE 246
LS+E+ + NME+++ +L + +D +DG +++E EG+ S+ + ++SK + K+
Sbjct: 22 LSVEKRRWRINMETSKIILEKMQSDDVLDGNRERSNEREGRDSLSEKLKSKQ----NLKD 77
Query: 247 KEHLTPVRSSESKSVKKVTFAK 268
+E L +++ +S V+ AK
Sbjct: 78 EEKLRYIKTGKSIQVEGTVRAK 99
>sp|A5GHU5|MUTS_SYNPW DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
WH7803) GN=mutS PE=3 SV=1
Length = 910
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 184 IDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNS 243
IDA LS+ E + G+ +DGL NQ D+ + ++ ++ ++ + G N+
Sbjct: 523 IDAPPLSLSEGGL---------IHDGVDPLLDGLRNQLDDQDAWLAEQERLERERSGNNN 573
Query: 244 TKEKEHLT-----PVRSSESKSV-----KKVTFAKDQEPITKVPSLSELENKGATMLLKE 293
+ + H T V +++ SV ++ T A ++ IT P L E E G L+
Sbjct: 574 LRLQYHRTFGYFLAVSKAKASSVPEHWIRRQTLANEERFIT--PELKERE--GRIFQLRA 629
Query: 294 EKASQVFQEYPYLFAQVG 311
+ ++ Y L QVG
Sbjct: 630 RACQREYELYCSLREQVG 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,929,513
Number of Sequences: 539616
Number of extensions: 5894191
Number of successful extensions: 26357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 25368
Number of HSP's gapped (non-prelim): 1004
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)