Query 014613
Match_columns 421
No_of_seqs 162 out of 660
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00167 VPS9 Domain present 100.0 3.1E-33 6.8E-38 243.3 10.7 115 79-197 1-116 (117)
2 PF02204 VPS9: Vacuolar sortin 99.9 1.2E-25 2.7E-30 188.2 11.0 103 80-185 1-103 (104)
3 KOG2319 Vacuolar assembly/sort 99.8 1.7E-20 3.7E-25 197.3 3.1 353 1-372 14-369 (477)
4 KOG2320 RAS effector RIN1 (con 99.6 4.1E-15 8.9E-20 156.6 11.8 189 12-204 332-526 (651)
5 KOG2319 Vacuolar assembly/sort 99.1 3.5E-10 7.6E-15 119.6 12.0 168 25-197 181-353 (477)
6 PF04558 tRNA_synt_1c_R1: Glut 41.6 77 0.0017 29.5 6.2 67 125-198 43-109 (164)
7 TIGR02878 spore_ypjB sporulati 33.6 70 0.0015 31.7 4.8 25 129-154 194-218 (233)
8 PF01031 Dynamin_M: Dynamin ce 25.2 6.3E+02 0.014 25.0 10.1 115 80-208 89-207 (295)
9 PF04219 DUF413: Protein of un 23.4 66 0.0014 27.5 2.3 26 301-327 6-31 (93)
10 PLN02859 glutamine-tRNA ligase 21.1 7.9E+02 0.017 28.7 10.9 72 127-203 47-131 (788)
11 PF15393 DUF4615: Domain of un 20.8 2.3E+02 0.005 25.5 5.3 51 49-106 4-54 (124)
12 COG4737 Uncharacterized protei 20.2 1E+02 0.0022 27.5 2.9 34 303-338 72-105 (123)
No 1
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=100.00 E-value=3.1e-33 Score=243.34 Aligned_cols=115 Identities=35% Similarity=0.599 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhh
Q 014613 79 SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR 158 (421)
Q Consensus 79 ~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~ 158 (421)
+|..|+.+|++||.++||+|||.||++||+.|++.+.. ..+.++|||||||+||||||||+|++|+||++||++|+
T Consensus 1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~----~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~ 76 (117)
T smart00167 1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLET----QSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFL 76 (117)
T ss_pred CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc----ccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHC
Confidence 58999999999999999999999999999999998853 23567999999999999999999999999999999999
Q ss_pred ccccccCchhhHHhhHHHHHHHHHhCCCCCCC-CCHHHHH
Q 014613 159 RQSRLVGEAAYFFTNMLSAESFISNIDAQALS-MEESEFE 197 (421)
Q Consensus 159 ~~s~L~gE~gYyLTnLeAAv~FI~~ld~esLs-I~~~eF~ 197 (421)
+++.+.||.|||||||++|+.||++++.++|. .++++|+
T Consensus 77 ~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~~~~~~~~ 116 (117)
T smart00167 77 EPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQEL 116 (117)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHCCHHhCCccCHHHhc
Confidence 99999999999999999999999999999997 5566664
No 2
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=99.93 E-value=1.2e-25 Score=188.21 Aligned_cols=103 Identities=41% Similarity=0.706 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhc
Q 014613 80 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR 159 (421)
Q Consensus 80 ~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~ 159 (421)
|+.|+.+|++|+..+||.+|+.||.++++.|.+.+.. ......+|||||||+|+|||+||++++++++++||+.|+.
T Consensus 1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~---~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~ 77 (104)
T PF02204_consen 1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKT---SKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFID 77 (104)
T ss_dssp -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHH---HCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc---ccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999998822 3467889999999999999999999999999999999998
Q ss_pred cccccCchhhHHhhHHHHHHHHHhCC
Q 014613 160 QSRLVGEAAYFFTNMLSAESFISNID 185 (421)
Q Consensus 160 ~s~L~gE~gYyLTnLeAAv~FI~~ld 185 (421)
+..+.||.|||||||++|++||++++
T Consensus 78 ~~~~~~e~~y~ltt~~aA~~~i~~~~ 103 (104)
T PF02204_consen 78 SSLLSGEEGYYLTTFEAAVEYIQNLE 103 (104)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHC--
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHcc
Confidence 88889999999999999999999986
No 3
>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.7e-20 Score=197.29 Aligned_cols=353 Identities=35% Similarity=0.446 Sum_probs=266.8
Q ss_pred ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHhccCCCCccccccccCChhhH
Q 014613 1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSW 80 (421)
Q Consensus 1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e~~~ 80 (421)
|+..+..||.|..+++++.+..+.++++++|+..++.+|....++...|.....+...++..+.++..+..+.+.....|
T Consensus 14 ~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 93 (477)
T KOG2319|consen 14 YSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFASDVEEVDADVLNEIDDSSLQTIISPEASGDQETFNQNTSI 93 (477)
T ss_pred hhhhhccccccccchhhhhhhccccccchhcccccccCcchhhhhhhhHhhhccccchhhhhcCHhhccCccchhhccch
Confidence 56789999999999999999999999999999999999994444556676666667667778889999999888888889
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhcc
Q 014613 81 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQ 160 (421)
Q Consensus 81 ~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~ 160 (421)
..|+.++..++.+..|.+|+.|++.||+.++........ .+.-+++|+|.++|++.+++++++++++.|..+|+..
T Consensus 94 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 169 (477)
T KOG2319|consen 94 ENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSI----APNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRRE 169 (477)
T ss_pred hhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhc----ccccccccccceeeeccccCchhhhhhHHHHHHHHHh
Confidence 999999999999999999999999999999987765332 2223999999999999999999999999999999999
Q ss_pred ccccCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccccCCCCCccccccchhhhhhhcccc-
Q 014613 161 SRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQ- 239 (421)
Q Consensus 161 s~L~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (421)
..+.++.+||++++..+..|+.+....++.+++.+|+..|..+.+...++..-.... ..+.+.+....-....
T Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i------~~~~~~~~~~~~~~~~~ 243 (477)
T KOG2319|consen 170 GPLEGENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDI------PVLEQIPELSKRVALAS 243 (477)
T ss_pred hhHHHHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccc------cccccccchhHHHHHHH
Confidence 988999999999999999999999999999999999999999998887764421111 1111100000000000
Q ss_pred -CCCCCcccccCCCCCCccccccccccccccCCCccCCCChHHHHhhccchhhchh-hhhccccCccccccccCCcchhh
Q 014613 240 -GVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEE-KASQVFQEYPYLFAQVGDLTISD 317 (421)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~g~~~~~~~~-~~~~~~~~y~~l~a~~~dl~~~d 317 (421)
....-+.. ..++.. ...+ ..... .++-..-...|.|++|+-.++..- ..-..++.|+|+.+...+++.+.
T Consensus 244 ~~~~~i~~~-~~~~~~-----~~~~-~~~~~-~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~ 315 (477)
T KOG2319|consen 244 QRLALIREL-LTPRDK-----KEAC-ALNCE-KPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRA 315 (477)
T ss_pred HHHHHHHHh-hcchhh-----hHHH-HHHHH-HHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhccc
Confidence 00000000 000000 0000 00011 133344456678899977777654 56667799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHhhhhhhhcCCCCCcccc
Q 014613 318 VEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVE 372 (421)
Q Consensus 318 v~~ll~~yk~lv~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (421)
++.+++.|+.++++|.+++++++.. ..+.+.++..|.-.+..+.+..+++...+
T Consensus 316 ~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~q~~~~~~~~~~~~~~~~~e 369 (477)
T KOG2319|consen 316 PERLSGEEKYYLFTYACASSDIFDA-TLLSLTISSLQDFAREHTAYESEEVSLRE 369 (477)
T ss_pred HHhhhccchhhhhhhhhhhhhhhhh-hhhhcccchhhhhhhhccchhhhhhhhcc
Confidence 9999999999999999999999998 55666677777665555556655544433
No 4
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.1e-15 Score=156.56 Aligned_cols=189 Identities=22% Similarity=0.300 Sum_probs=149.3
Q ss_pred CCCCHHHHHHHHH-HHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHh---ccCCCCccccccccCChhhHHHHHHHH
Q 014613 12 AGCSEEELDSAGE-GLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ---QFVRPENLDIKASFQNETSWLLAQKEL 87 (421)
Q Consensus 12 ~~~seeele~i~e-~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~---~fItpe~LgI~~~~~~e~~~~~Ai~eL 87 (421)
...+++++|.+.| +|.+.|+..+-..|.........+|-.++. ++.-+ .--.+..||+--.-.....++.....+
T Consensus 332 ~~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l~~~h~~dGsl~~-l~en~~vvr~~~~~~lG~~~~~Ps~~~mEqvk~k~ 410 (651)
T KOG2320|consen 332 SLLSETPLEAVLESALHKSVLKPLKPNLSAQLPPVHSKDGSLQQ-LKENQDVVRAANPTALGVFLSTPSDVLMEQVKQKF 410 (651)
T ss_pred cccCcchHHHHHHHHHHHhhccccchhHhhhcchhhhhccHHHH-HhcccceecccCccccceeccCCcHHHHHHHHHHH
Confidence 3456789999988 799999999998888887766677765543 33211 233466888833334445567788889
Q ss_pred HhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCch
Q 014613 88 QKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEA 167 (421)
Q Consensus 88 ~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~ 167 (421)
.+|....+|..|+..++++|+.|+..+.+ ...+...|||||||+|.||+.|++.+.+..+++||.+|..++.+.||.
T Consensus 411 ~~m~r~YSP~kkl~~Llk~ckLly~~~~~---~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~~geg 487 (651)
T KOG2320|consen 411 TAMQRRYSPSKKLHALLKACKLLYAGMGG---DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLLSGEG 487 (651)
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHhcc---CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhhcCcc
Confidence 99999999999999999999999988753 235678899999999999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHHhCCCCC-CC-CCHHHHHHHHHHHH
Q 014613 168 AYFFTNMLSAESFISNIDAQA-LS-MEESEFERNMESAQ 204 (421)
Q Consensus 168 gYyLTnLeAAv~FI~~ld~es-Ls-I~~~eF~~~m~~a~ 204 (421)
|||||++.+|+++|.++.... .. ---.|-+..+..|.
T Consensus 488 gYYLTs~~~al~~iks~~~~~ra~r~l~~e~r~Slhqw~ 526 (651)
T KOG2320|consen 488 GYYLTSLYGALEHIKSLGRITRAPRGLSVERRDSLHQWE 526 (651)
T ss_pred chhHHHHHHHHHHHhccccccccccccchhhhHHHHHHH
Confidence 999999999999999998765 22 11134455555553
No 5
>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.5e-10 Score=119.62 Aligned_cols=168 Identities=33% Similarity=0.407 Sum_probs=143.0
Q ss_pred HHHHHHHHhHHHHhcCCCC-CChhhhHHHHHHHHHHhccCCCCccccccccCCh---hhHHHHHHHHHhcccCCChHH-H
Q 014613 25 GLEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNE---TSWLLAQKELQKINMYKAPRD-K 99 (421)
Q Consensus 25 ~LEkyVm~kLYd~lF~~~~-ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e---~~~~~Ai~eL~kIn~~kSP~D-K 99 (421)
.++.+.+.++|..++.... .+.+.|..++.+++.+ +++++..++|+..-+.. .....+...+..|+.+..|++ |
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 259 (477)
T KOG2319|consen 181 TCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRL-QGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLTPRDKK 259 (477)
T ss_pred HHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhh-cccchhhccccccccccchhHHHHHHHHHHHHHHHhhcchhhh
Confidence 4555566666666666654 4678899999999998 89999999998765432 256788899999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCchhhHHhhHHHHHH
Q 014613 100 LVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAES 179 (421)
Q Consensus 100 L~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~gYyLTnLeAAv~ 179 (421)
..|.++|++.|++.+.. ......++|.|+|.++|.+++.+..++.+++.|+.+|+.+.++.|+.+|++.++.++..
T Consensus 260 ~~~~~~~~~~~f~~l~~----~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 335 (477)
T KOG2319|consen 260 EACALNCEKPIFSALKI----TDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASS 335 (477)
T ss_pred HHHHHHHHHHHHhhhhc----cchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhh
Confidence 99999999999987753 34567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCHHHHH
Q 014613 180 FISNIDAQALSMEESEFE 197 (421)
Q Consensus 180 FI~~ld~esLsI~~~eF~ 197 (421)
++...+..++.|.+.+.-
T Consensus 336 ~~~~~~~~~~~i~~~q~~ 353 (477)
T KOG2319|consen 336 DIFDATLLSLTISSLQDF 353 (477)
T ss_pred hhhhhhhhhcccchhhhh
Confidence 999999999998885544
No 6
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=41.63 E-value=77 Score=29.53 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHH
Q 014613 125 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFER 198 (421)
Q Consensus 125 ~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~ 198 (421)
..+.|.=.-.|+|.+.-.-+++-..+..||-.|.....+.+.. ++.+|+.|+.+...+ .++..+|++
T Consensus 43 ~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gklkt~~-----Ql~AA~~Yl~~~~~~--~~d~~~Fe~ 109 (164)
T PF04558_consen 43 DSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKLKTNL-----QLDAALKYLKSNPSE--PIDVAEFEK 109 (164)
T ss_dssp T----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS--SHH-----HHHHHHHHHHHHGG---G--HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCCCCHH-----HHHHHHHHHHHCCCC--CCCHHHHHH
Confidence 3577888889999998766666677889999999888776543 899999999887662 344455543
No 7
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=33.56 E-value=70 Score=31.67 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHhcCCcchhhHHHHH
Q 014613 129 DEFLPVLIYVTIKANPPQLHSNLLYI 154 (421)
Q Consensus 129 DDfLPILIYVIIKAn~p~L~SnI~YI 154 (421)
|+--|.||||+|-.... |...|-|+
T Consensus 194 D~aDPSLiWvmistGg~-IvltLTYV 218 (233)
T TIGR02878 194 DEADPSLLWVMISTGGI-IVATLTYV 218 (233)
T ss_pred CCCCcHHHHHHHHhhHH-HHHHHhhh
Confidence 34449999999864432 45556665
No 8
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=25.20 E-value=6.3e+02 Score=24.97 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccCC--ChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHh
Q 014613 80 WLLAQKELQKINMYK--APRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRY 157 (421)
Q Consensus 80 ~~~Ai~eL~kIn~~k--SP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F 157 (421)
...+..+|.++...+ ++.++..+|++.+....+.+... +.+... |++ ..+--...+.|.+|-.=
T Consensus 89 l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~-i~G~~~----~~~---------~~~~l~~~ari~~~f~~ 154 (295)
T PF01031_consen 89 LQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDA-IDGEYS----DEF---------STNELRGGARIRYIFNE 154 (295)
T ss_dssp HHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHH-HTT--------------------TTS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hcCCcc----ccc---------cccccchhhHHHHHHHh
Confidence 456678888886443 68999999988877777766543 211111 111 22333344555444221
Q ss_pred hccccccCchhhHHhhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHHHHhc
Q 014613 158 RRQSRLVGEAAYFFTNMLSAESFISNIDAQALS--MEESEFERNMESAQALLS 208 (421)
Q Consensus 158 ~~~s~L~gE~gYyLTnLeAAv~FI~~ld~esLs--I~~~eF~~~m~~a~~~~~ 208 (421)
.....+..-...--.+.+-.-.+|++...-.|. ++..-|+..+......+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~ 207 (295)
T PF01031_consen 155 WFDKFLEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLE 207 (295)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTH
T ss_pred hhhhhhhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 111111000000011233445677787777775 899999999987765443
No 9
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=23.42 E-value=66 Score=27.50 Aligned_cols=26 Identities=35% Similarity=0.750 Sum_probs=21.2
Q ss_pred cCccccccccCCcchhhHHHHHHHHHH
Q 014613 301 QEYPYLFAQVGDLTISDVEDLLNNYKQ 327 (421)
Q Consensus 301 ~~y~~l~a~~~dl~~~dv~~ll~~yk~ 327 (421)
+.||+=|+|.||.||.+ ++||..|=.
T Consensus 6 ~~fPrGF~RsGdFTi~E-a~lLe~~G~ 31 (93)
T PF04219_consen 6 KNFPRGFSRSGDFTIKE-AQLLEQYGH 31 (93)
T ss_pred CCCCCccccCCcccHHH-HHHHHHHHH
Confidence 67999999999999988 456666654
No 10
>PLN02859 glutamine-tRNA ligase
Probab=21.11 E-value=7.9e+02 Score=28.68 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=52.0
Q ss_pred CchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCchhhHHhhHHHHHHHHHhCCCCC-------------CCCCH
Q 014613 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQA-------------LSMEE 193 (421)
Q Consensus 127 gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~gYyLTnLeAAv~FI~~ld~es-------------LsI~~ 193 (421)
+.|.=.-.|+|.+.-.-+++...+..||-.|.....+.... ++.+|+.|+.+...+. ..+++
T Consensus 47 ~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gkIkT~~-----Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~ 121 (788)
T PLN02859 47 GCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSKIKTPA-----QLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSP 121 (788)
T ss_pred CCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCCCCCHH-----HHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECH
Confidence 46777788888888655667778888899988887776543 8999999997654432 23666
Q ss_pred HHHHHHHHHH
Q 014613 194 SEFERNMESA 203 (421)
Q Consensus 194 ~eF~~~m~~a 203 (421)
++.++.+...
T Consensus 122 EqI~~~V~~~ 131 (788)
T PLN02859 122 EDIEAAVNEV 131 (788)
T ss_pred HHHHHHHHHH
Confidence 7766666654
No 11
>PF15393 DUF4615: Domain of unknown function (DUF4615)
Probab=20.78 E-value=2.3e+02 Score=25.46 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhccCCCCccccccccCChhhHHHHHHHHHhcccCCChHHHHHHHHHH
Q 014613 49 DEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNC 106 (421)
Q Consensus 49 D~~L~~KI~~L~~fItpe~LgI~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~ 106 (421)
..+|.+-|..| .||+.........+..+...|+.|.+-++|.=|-.+||++
T Consensus 4 e~EL~WCI~QL-------elgl~~~k~t~kq~ee~~k~i~~L~S~k~plvkKRqlMr~ 54 (124)
T PF15393_consen 4 ERELDWCIQQL-------ELGLQRQKLTPKQIEEASKAIRTLKSNKAPLVKKRQLMRS 54 (124)
T ss_pred HHHHHHHHHHH-------HHHhhcCCCCHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 34677777777 5677665555667889999999999999999999999876
No 12
>COG4737 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=1e+02 Score=27.47 Aligned_cols=34 Identities=32% Similarity=0.690 Sum_probs=30.9
Q ss_pred ccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 014613 303 YPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKG 338 (421)
Q Consensus 303 y~~l~a~~~dl~~~dv~~ll~~yk~lv~~y~~l~~~ 338 (421)
|=|+||+.+--.|.|-+ |..||.|+--|-+|+++
T Consensus 72 f~f~faKsd~~nI~~~E--la~frklA~~~l~~t~a 105 (123)
T COG4737 72 FVFLFAKSDRANISDME--LAAFRKLAKHYLALTRA 105 (123)
T ss_pred EEEEeeccCccccccHH--HHHHHHHHHHHHHHhHH
Confidence 78999999999999866 88999999999999985
Done!