Query 014613
Match_columns 421
No_of_seqs 162 out of 660
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efe_A Similarity to vacuolar 100.0 3.5E-50 1.2E-54 390.9 20.8 208 1-208 59-266 (267)
2 2ot3_A RAB5 GDP/GTP exchange f 100.0 2E-43 6.8E-48 345.0 19.9 195 1-203 66-265 (274)
3 3tl4_X Glutaminyl-tRNA synthet 29.0 1.3E+02 0.0043 27.5 6.9 54 126-184 45-98 (187)
4 1t6a_A Rbstp2229 gene product; 17.1 1E+02 0.0036 26.4 3.5 25 308-332 9-33 (126)
5 3obq_A Tumor susceptibility ge 14.4 23 0.00079 31.1 -1.3 33 294-331 10-42 (146)
6 1dul_A Signal recognition part 12.0 1E+02 0.0036 23.7 2.0 22 308-329 42-63 (69)
7 1hq1_A Signal recognition part 10.0 1.4E+02 0.0046 24.8 2.2 22 308-329 76-97 (105)
8 2jqe_A SRP54, signal recogniti 9.9 1.4E+02 0.0047 25.3 2.2 22 308-329 85-106 (119)
9 2pqq_A Putative transcriptiona 9.8 2E+02 0.0068 22.5 3.1 26 1-26 3-28 (149)
10 1mfq_C SRP54, signal recogniti 8.9 1.6E+02 0.0053 25.4 2.2 23 308-330 95-117 (129)
No 1
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=100.00 E-value=3.5e-50 Score=390.92 Aligned_cols=208 Identities=84% Similarity=1.283 Sum_probs=195.5
Q ss_pred ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHhccCCCCccccccccCChhhH
Q 014613 1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSW 80 (421)
Q Consensus 1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e~~~ 80 (421)
|+..|+.||+|+++++++++.++++||+|||.+||+++|.+.+++.++|..|++||+.|++||+|+||||++.+.++.+|
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v~~~ly~~lf~~~~~d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~ 138 (267)
T 2efe_A 59 MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSW 138 (267)
T ss_dssp HHHHHHSCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCS
T ss_pred HHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccH
Confidence 57889999999999999999999999999999999999999888889999999999999669999999999999888899
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhcc
Q 014613 81 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQ 160 (421)
Q Consensus 81 ~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~ 160 (421)
..|+++|++|+.++||+|||.||++||+.|++.+...+..+.+.++|||||||+||||||||+||+|+||++||++|+++
T Consensus 139 ~~A~~eL~ki~~~~sP~dKl~~l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~ 218 (267)
T 2efe_A 139 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRE 218 (267)
T ss_dssp HHHHHHHHTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999886544344567899999999999999999999999999999999999
Q ss_pred ccccCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhc
Q 014613 161 SRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLS 208 (421)
Q Consensus 161 s~L~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a~~~~~ 208 (421)
+.+.||.|||||||++|++||++++.++|+|+++||++.|++|++.+.
T Consensus 219 ~~l~gE~gY~lt~l~aA~~fI~~l~~~~L~i~~~ef~~~~~~~~~~~~ 266 (267)
T 2efe_A 219 SKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNMESARARIS 266 (267)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHC--
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988654
No 2
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=100.00 E-value=2e-43 Score=345.02 Aligned_cols=195 Identities=34% Similarity=0.633 Sum_probs=177.5
Q ss_pred ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCC-CChhhhHHHHHHHHHHhccCCCCccccccccCC---
Q 014613 1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQN--- 76 (421)
Q Consensus 1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~-ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~--- 76 (421)
|..+|+.| |++ ++++++.++++||+|||.+||+.+|.+.. .+..+|..|++||+.| +||+|+||||+..+..
T Consensus 66 ~~~~l~~~--~~~-s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L-~~i~~~~L~I~~~~~~p~~ 141 (274)
T 2ot3_A 66 VAERMQTR--GKV-PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEV 141 (274)
T ss_dssp HHHHHHST--TCC-CHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHH
T ss_pred HHHHHHHH--hcc-CHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH-cCCCHHHcCCCcccCCchH
Confidence 45678888 987 78899999999999999999999999975 4578899999999999 7999999999987643
Q ss_pred hhhHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHH
Q 014613 77 ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQR 156 (421)
Q Consensus 77 e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~ 156 (421)
...|..|+++|++|+.++||+|||.||++||+.|++.+... .+.++|||||||+||||||||+||+|+||++||++
T Consensus 142 ~~~~~~A~~eL~~i~~~~sP~dKL~~l~~~~k~I~~~l~~~----~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~ 217 (274)
T 2ot3_A 142 SDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITR 217 (274)
T ss_dssp HHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 23699999999999999999999999999999999988642 35679999999999999999999999999999999
Q ss_pred hhccccc-cCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 014613 157 YRRQSRL-VGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESA 203 (421)
Q Consensus 157 F~~~s~L-~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a 203 (421)
|++++.+ .||.|||||||++|+.||++++.++|+|+++||++.|..+
T Consensus 218 F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~~~ 265 (274)
T 2ot3_A 218 FCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQ 265 (274)
T ss_dssp HSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHTTS
T ss_pred HcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHhhc
Confidence 9999865 7999999999999999999999999999999999998744
No 3
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=29.02 E-value=1.3e+02 Score=27.47 Aligned_cols=54 Identities=7% Similarity=-0.161 Sum_probs=40.8
Q ss_pred CCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCchhhHHhhHHHHHHHHHhC
Q 014613 126 PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 184 (421)
Q Consensus 126 ~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~gYyLTnLeAAv~FI~~l 184 (421)
.+.|.=.-.|+|.+.-.-.++-..+..||-+|.....+.+.. ++.+|+.|+...
T Consensus 45 ~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gklkt~~-----Qv~AAl~yl~~~ 98 (187)
T 3tl4_X 45 YQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDLKTSL-----QVDAAFKYVKAN 98 (187)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSCCSHH-----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccCCcHH-----HHHHHHHHHHhC
Confidence 356888888888888544455566788888888888776643 789999999764
No 4
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=17.08 E-value=1e+02 Score=26.39 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.6
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHH
Q 014613 308 AQVGDLTISDVEDLLNNYKQLVFKY 332 (421)
Q Consensus 308 a~~~dl~~~dv~~ll~~yk~lv~~y 332 (421)
....++++.||.+||..||+..-|.
T Consensus 9 s~~~s~sledvK~ll~~Y~~~t~kT 33 (126)
T 1t6a_A 9 PAGKTMTIEDVKQLLERYQMALKKT 33 (126)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHhh
Confidence 5667889999999999999987764
No 5
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=14.38 E-value=23 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=24.3
Q ss_pred hhhhccccCccccccccCCcchhhHHHHHHHHHHHHHH
Q 014613 294 EKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFK 331 (421)
Q Consensus 294 ~~~~~~~~~y~~l~a~~~dl~~~dv~~ll~~yk~lv~~ 331 (421)
....++.++|+| .|+++.||.++|..|+.|.-+
T Consensus 10 ~~l~~~l~~Y~~-----~d~t~~dv~~vl~~yp~L~p~ 42 (146)
T 3obq_A 10 SQLKKMVSKYKY-----RDLTVRETVNVITLYKDLKPV 42 (146)
T ss_dssp HHHHHHTTTCSS-----HHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHhcCCC-----cchhHHHHHHHHHhCCCCceE
Confidence 334445566865 578999999999999987543
No 6
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=12.00 E-value=1e+02 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.6
Q ss_pred cccCCcchhhHHHHHHHHHHHH
Q 014613 308 AQVGDLTISDVEDLLNNYKQLV 329 (421)
Q Consensus 308 a~~~dl~~~dv~~ll~~yk~lv 329 (421)
|+--..+|.||.+||..|++.-
T Consensus 42 A~GSG~~v~eVn~Llkqf~~m~ 63 (69)
T 1dul_A 42 AAGSGMQVQDVNRLLKQFDDMQ 63 (69)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHH
Confidence 4445678999999999999863
No 7
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=10.04 E-value=1.4e+02 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.7
Q ss_pred cccCCcchhhHHHHHHHHHHHH
Q 014613 308 AQVGDLTISDVEDLLNNYKQLV 329 (421)
Q Consensus 308 a~~~dl~~~dv~~ll~~yk~lv 329 (421)
|+--..+|.||.+||..|++.-
T Consensus 76 A~GSG~~v~eVn~LLkqf~~m~ 97 (105)
T 1hq1_A 76 AAGSGMQVQDVNRLLKQFDDMQ 97 (105)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHH
Confidence 4445678999999999999864
No 8
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=9.86 E-value=1.4e+02 Score=25.33 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=17.6
Q ss_pred cccCCcchhhHHHHHHHHHHHH
Q 014613 308 AQVGDLTISDVEDLLNNYKQLV 329 (421)
Q Consensus 308 a~~~dl~~~dv~~ll~~yk~lv 329 (421)
|+--..+|.||.+||..|++.-
T Consensus 85 A~GSG~~v~eVn~LLkqf~~m~ 106 (119)
T 2jqe_A 85 AIGSGTSPQEVKELLNYYKTMK 106 (119)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHH
Confidence 3444678999999999999864
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=9.85 E-value=2e+02 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=18.2
Q ss_pred ChhhhhcCCCCCCCCHHHHHHHHHHH
Q 014613 1 MEAAFRAHPLWAGCSEEELDSAGEGL 26 (421)
Q Consensus 1 me~~~~~hp~W~~~seeele~i~e~L 26 (421)
|...++.+|+|.++++++++.+...+
T Consensus 3 m~~~l~~~~~f~~l~~~~~~~l~~~~ 28 (149)
T 2pqq_A 3 MDDVLRRNPLFAALDDEQSAELRASM 28 (149)
T ss_dssp GGGGGTSSTTTTTCCHHHHHHHHHHC
T ss_pred hHHHhhhChhhhcCCHHHHHHHHHhc
Confidence 56677778888888877776665543
No 10
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=8.90 E-value=1.6e+02 Score=25.41 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=18.5
Q ss_pred cccCCcchhhHHHHHHHHHHHHH
Q 014613 308 AQVGDLTISDVEDLLNNYKQLVF 330 (421)
Q Consensus 308 a~~~dl~~~dv~~ll~~yk~lv~ 330 (421)
|+--..+|.||.+||..|++.--
T Consensus 95 A~GSG~~v~eVn~LLkqf~qm~k 117 (129)
T 1mfq_C 95 ARGSGVSTRDVQELLTQYTKFAQ 117 (129)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHH
Confidence 44556799999999999998643
Done!