Query 014614
Match_columns 421
No_of_seqs 239 out of 405
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 97.9 3.2E-06 1.1E-10 87.2 3.3 8 209-216 116-123 (437)
2 3cw1_L U1 small nuclear ribonu 81.2 0.82 2.8E-05 36.1 2.5 29 270-299 4-32 (77)
3 1lq7_A Alpha3W; three helix bu 78.5 13 0.00043 27.3 7.8 22 129-150 6-27 (67)
4 2yrk_A Zinc finger homeobox pr 75.2 1.1 3.6E-05 33.0 1.4 31 270-303 14-44 (55)
5 3na7_A HP0958; flagellar bioge 75.0 29 0.00099 32.5 11.8 71 82-170 60-130 (256)
6 2fc6_A Nuclear, target of EGR1 63.2 2.5 8.5E-05 30.5 1.1 25 29-62 19-44 (50)
7 1f5n_A Interferon-induced guan 62.4 89 0.003 33.1 13.5 37 208-244 546-582 (592)
8 2e5s_A Otthump00000018578; ZF- 58.2 6.5 0.00022 32.0 3.0 13 30-42 20-32 (98)
9 1l8d_A DNA double-strand break 57.1 7 0.00024 31.9 3.1 11 270-280 48-58 (112)
10 2cqe_A KIAA1064 protein; CCCH 52.9 5.4 0.00019 32.4 1.7 15 29-43 12-26 (98)
11 3d2n_A Muscleblind-like protei 50.2 7.5 0.00026 30.7 2.0 16 27-42 6-21 (83)
12 2d9n_A Cleavage and polyadenyl 48.3 8.3 0.00028 29.7 2.0 16 27-42 7-22 (77)
13 2lo3_A SAGA-associated factor 45.7 5 0.00017 28.0 0.3 27 268-294 16-42 (44)
14 2rhk_C Cleavage and polyadenyl 44.0 9.6 0.00033 29.1 1.7 16 27-42 13-28 (72)
15 1zu1_A DSRBP-ZFA, RNA binding 42.4 7 0.00024 33.0 0.8 31 268-301 92-122 (127)
16 3u8p_A Cytochrome B562 integra 40.8 57 0.002 32.2 7.0 35 208-243 108-142 (347)
17 2rpp_A Muscleblind-like protei 39.8 16 0.00055 29.3 2.5 17 26-42 13-29 (89)
18 2lvr_A Zinc finger and BTB dom 45.5 6.3 0.00021 22.6 0.0 11 269-279 3-13 (30)
19 2lvt_A Zinc finger and BTB dom 45.1 6.4 0.00022 22.6 0.0 9 270-278 3-11 (29)
20 3d2q_A Muscleblind-like protei 38.1 11 0.00038 28.5 1.2 23 31-63 43-65 (70)
21 2h8b_A Insulin-like 3; insulin 36.7 8.2 0.00028 23.9 0.2 12 32-43 15-26 (26)
22 2aus_D NOP10, ribosome biogene 36.0 12 0.00039 28.1 1.0 37 268-309 4-50 (60)
23 1ard_A Yeast transcription fac 35.9 6 0.00021 22.5 -0.5 20 270-292 3-22 (29)
24 2i5o_A DNA polymerase ETA; zin 35.4 9.2 0.00032 26.1 0.3 25 269-293 9-33 (39)
25 3n71_A Histone lysine methyltr 35.0 77 0.0026 32.4 7.4 83 125-243 300-382 (490)
26 1zu1_A DSRBP-ZFA, RNA binding 33.9 10 0.00036 31.9 0.5 27 270-299 33-59 (127)
27 1rik_A E6APC1 peptide; E6-bind 32.6 7.9 0.00027 22.0 -0.3 20 270-292 3-22 (29)
28 3mjh_B Early endosome antigen 32.2 12 0.00041 24.8 0.5 23 270-295 6-28 (34)
29 2m0e_A Zinc finger and BTB dom 32.2 9.1 0.00031 21.5 -0.1 9 270-278 3-11 (29)
30 3pwf_A Rubrerythrin; non heme 32.1 11 0.00038 33.5 0.4 25 267-293 136-160 (170)
31 2elr_A Zinc finger protein 406 31.7 16 0.00055 22.0 1.1 23 267-292 7-29 (36)
32 1zr9_A Zinc finger protein 593 31.4 14 0.00049 31.4 1.0 31 266-299 47-77 (124)
33 1znf_A 31ST zinc finger from X 29.1 19 0.00064 20.0 0.9 20 270-292 2-21 (27)
34 1rim_A E6APC2 peptide; E6-bind 28.8 17 0.00059 21.9 0.8 25 270-299 3-27 (33)
35 2w2u_A Hypothetical P60 katani 27.0 2.2E+02 0.0075 22.0 7.6 61 135-223 20-80 (83)
36 2lj9_A CP12 domain-containing 26.8 13 0.00046 30.5 0.0 43 205-247 25-68 (99)
37 2en2_A B-cell lymphoma 6 prote 25.8 11 0.00037 23.9 -0.7 23 267-292 9-31 (42)
38 2eq2_A Zinc finger protein 347 25.8 25 0.00086 22.6 1.2 28 267-299 10-37 (46)
39 1p7a_A BF3, BKLF, kruppel-like 25.4 28 0.00096 21.0 1.4 23 267-292 9-31 (37)
40 1klr_A Zinc finger Y-chromosom 25.4 12 0.00042 21.1 -0.4 10 270-279 3-12 (30)
41 2kfq_A FP1; protein, de novo p 25.4 10 0.00035 22.7 -0.8 9 270-278 3-11 (32)
42 2enf_A Zinc finger protein 347 25.3 13 0.00046 24.0 -0.3 23 267-292 10-32 (46)
43 1x0t_A Ribonuclease P protein 25.0 1.2E+02 0.004 25.3 5.5 62 209-285 20-81 (120)
44 2elp_A Zinc finger protein 406 24.8 13 0.00044 22.7 -0.4 11 268-278 8-18 (37)
45 2elt_A Zinc finger protein 406 24.7 20 0.0007 21.5 0.6 23 267-292 7-29 (36)
46 4a5x_A MITD1, MIT domain-conta 24.6 1.3E+02 0.0043 23.5 5.4 26 135-160 17-42 (86)
47 2yti_A Zinc finger protein 347 24.5 13 0.00045 24.0 -0.4 23 267-292 10-32 (46)
48 2en7_A Zinc finger protein 268 24.5 24 0.00083 22.3 1.0 28 267-299 10-37 (44)
49 1njq_A Superman protein; zinc- 23.7 16 0.00054 22.8 -0.1 22 268-292 5-26 (39)
50 2eov_A Zinc finger protein 484 23.7 26 0.00088 22.5 1.0 28 267-299 10-37 (46)
51 2ept_A Zinc finger protein 32; 23.5 13 0.00044 23.4 -0.6 28 267-299 8-35 (41)
52 2eoe_A Zinc finger protein 347 22.9 15 0.00051 23.7 -0.4 28 267-299 10-37 (46)
53 2elq_A Zinc finger protein 406 22.9 21 0.00073 21.5 0.4 23 267-292 7-29 (36)
54 2ytn_A Zinc finger protein 347 22.5 17 0.00059 23.4 -0.1 23 267-292 10-32 (46)
55 3u9g_A Zinc finger CCCH-type a 22.3 51 0.0017 30.9 3.0 14 25-39 146-159 (229)
56 2en9_A Zinc finger protein 28 22.1 16 0.00055 23.7 -0.3 23 267-292 10-32 (46)
57 2m0f_A Zinc finger and BTB dom 22.1 25 0.00084 19.6 0.5 20 270-292 3-22 (29)
58 2emy_A Zinc finger protein 268 22.0 14 0.00047 23.9 -0.7 23 267-292 10-32 (46)
59 4gzn_C ZFP-57, zinc finger pro 21.9 25 0.00086 25.3 0.7 28 267-299 30-57 (60)
60 2lvu_A Zinc finger and BTB dom 27.3 19 0.00066 19.9 0.0 10 269-278 2-11 (26)
61 3qww_A SET and MYND domain-con 21.7 2E+02 0.0069 28.7 7.6 82 126-243 290-371 (433)
62 3u1l_A PRE-mRNA-splicing facto 21.5 32 0.0011 32.3 1.4 25 28-61 68-92 (240)
63 2eme_A Zinc finger protein 473 21.3 27 0.00094 22.3 0.7 28 267-299 10-37 (46)
64 1dxg_A Desulforedoxin; non-hem 21.0 20 0.00068 23.7 -0.1 14 268-281 5-18 (36)
65 2em3_A Zinc finger protein 28 20.8 25 0.00087 22.6 0.5 23 267-292 10-32 (46)
66 2lv2_A Insulinoma-associated p 20.7 16 0.00055 28.4 -0.7 23 267-292 26-48 (85)
67 3alr_A Nanos protein; zinc-fin 20.3 22 0.00075 29.4 0.0 10 269-278 71-80 (106)
68 1lq7_A Alpha3W; three helix bu 20.2 1.6E+02 0.0055 21.4 4.6 29 208-236 7-35 (67)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.94 E-value=3.2e-06 Score=87.23 Aligned_cols=8 Identities=0% Similarity=0.301 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 014614 209 QEMINEKL 216 (421)
Q Consensus 209 ~~~I~~~l 216 (421)
++.|.+++
T Consensus 116 e~~L~~~F 123 (437)
T 3pgw_S 116 ESKLRREF 123 (437)
T ss_pred HHHHHHHH
Confidence 34444443
No 2
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=81.18 E-value=0.82 Score=36.07 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=24.5
Q ss_pred hhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
+-|+.|..||. .|+..=...|..|+.|++
T Consensus 4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~ 32 (77)
T 3cw1_L 4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKE 32 (77)
T ss_pred cccccCCceec-CCCHHHHHHHHccHHHHH
Confidence 57999999875 677765679999999998
No 3
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=78.48 E-value=13 Score=27.29 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhcccccCCc
Q 014614 129 ELSKQIKEKLKETDQYDYEGKT 150 (421)
Q Consensus 129 ~l~~~I~~ll~e~E~lg~eG~v 150 (421)
.|.++++.+-..+.+||.-|++
T Consensus 6 aleekvkaleekvkalggggri 27 (67)
T 1lq7_A 6 ALEEKVKALEEKVKALGGGGRI 27 (67)
T ss_dssp HHHHHHHHHHHHHHHSCCSSSH
T ss_pred HHHHHHHHHHHHHHHhcCCccH
Confidence 4556777777777888988875
No 4
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=75.21 E-value=1.1 Score=33.05 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=25.7
Q ss_pred hhhhcccccccccCchhhhhhhhhhhhhhcHHHH
Q 014614 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQI 303 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~~i 303 (421)
.-|..||. .+++..=|.||+.-++|++.+++
T Consensus 14 ~eC~lC~v---kYs~r~slqDHIFs~qHI~~vk~ 44 (55)
T 2yrk_A 14 PECTLCGV---KYSARLSIRDHIFSKQHISKVRE 44 (55)
T ss_dssp SCCTTTTC---CCCSSSCHHHHHTSHHHHHHHHH
T ss_pred ccccccCc---ccccccchhhhhccHHHHHHHHH
Confidence 47999996 46777789999999999987653
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.05 E-value=29 Score=32.52 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhccccccchHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHH
Q 014614 82 ELEDAIDRLIVECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVE 161 (421)
Q Consensus 82 e~~~~l~r~I~~~drrI~r~~~rLe~~~~~~~~~~~~~e~~~~eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~ve 161 (421)
.-+..++.-|.++..+|.+.+.+|.. +.+..+...|..+|..+-.++..+- ++-..+|+.++
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~-------------v~~~kE~~aL~kEie~~~~~i~~lE-----~eile~~e~ie 121 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSE-------------IKSERELRSLNIEEDIAKERSNQAN-----REIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------CSSSSHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33455555666666666666655532 2234455555555554444443332 23445555555
Q ss_pred HHHHHHHHH
Q 014614 162 ELRTKRADK 170 (421)
Q Consensus 162 eLk~ek~~~ 170 (421)
.++...+.+
T Consensus 122 ~~~~~l~~~ 130 (256)
T 3na7_A 122 RKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444444
No 6
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=63.21 E-value=2.5 Score=30.54 Aligned_cols=25 Identities=32% Similarity=0.866 Sum_probs=19.4
Q ss_pred CCCCcchhcc-CCCcchhhHhhhhcCCCCCccccH
Q 014614 29 DRDVCRLYLA-GLCPHELFQLTKMDMGPCPKVHSL 62 (421)
Q Consensus 29 D~~VCk~~L~-G~CPhdLF~nTK~DlG~C~k~Hde 62 (421)
-..||.-|=. |+||+-+ .||..||-
T Consensus 19 ~~~iC~~FSayGwCp~G~---------~Cp~SHDi 44 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGP---------QCPQSHDI 44 (50)
T ss_dssp CSCBCSHHHHTCCCTTGG---------GCSSBCCC
T ss_pred ccchhhhccccccCCCCC---------CCCccccC
Confidence 4568988877 9999776 58888864
No 7
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.45 E-value=89 Score=33.09 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhcc
Q 014614 208 TQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKL 244 (421)
Q Consensus 208 ~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~~ 244 (421)
.+..|+.+|++-+.|-.+|==++|..+..++..|+..
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 546 QERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999864
No 8
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.24 E-value=6.5 Score=32.02 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=10.4
Q ss_pred CCCcchhccCCCc
Q 014614 30 RDVCRLYLAGLCP 42 (421)
Q Consensus 30 ~~VCk~~L~G~CP 42 (421)
..||++||-|.|.
T Consensus 20 ~~VCr~FlrG~C~ 32 (98)
T 2e5s_A 20 LEVCREFQRGNCA 32 (98)
T ss_dssp EEBCSHHHHTCCS
T ss_pred hhhhHHHhcCcCC
Confidence 4689999997776
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.08 E-value=7 Score=31.88 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=9.0
Q ss_pred hhhhccccccc
Q 014614 270 RVCDICGAFLS 280 (421)
Q Consensus 270 ~VCeVCGA~Ls 280 (421)
.+|+|||.-|.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 47999998765
No 10
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=52.85 E-value=5.4 Score=32.43 Aligned_cols=15 Identities=33% Similarity=1.289 Sum_probs=11.7
Q ss_pred CCCCcchhccCCCcc
Q 014614 29 DRDVCRLYLAGLCPH 43 (421)
Q Consensus 29 D~~VCk~~L~G~CPh 43 (421)
-..+|++|+.|.|.+
T Consensus 12 k~~lC~~f~~G~C~~ 26 (98)
T 2cqe_A 12 KRELCKFYITGFCAR 26 (98)
T ss_dssp CCSBCTTTTTTCCSC
T ss_pred CCccCcccccCcCCC
Confidence 456899999888863
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=50.22 E-value=7.5 Score=30.75 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=10.0
Q ss_pred CCCCCCcchhccCCCc
Q 014614 27 YYDRDVCRLYLAGLCP 42 (421)
Q Consensus 27 ~~D~~VCk~~L~G~CP 42 (421)
|.-..||+.||-|.|.
T Consensus 6 ~~~~~VCr~FlrG~C~ 21 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCS 21 (83)
T ss_dssp GGEEEBCTTGGGTCCC
T ss_pred cccchhcHHHhcCCCC
Confidence 4445677777775554
No 12
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.28 E-value=8.3 Score=29.73 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=11.4
Q ss_pred CCCCCCcchhccCCCc
Q 014614 27 YYDRDVCRLYLAGLCP 42 (421)
Q Consensus 27 ~~D~~VCk~~L~G~CP 42 (421)
++-..||+|||-|.|.
T Consensus 7 ~~k~~~C~~fl~G~C~ 22 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCK 22 (77)
T ss_dssp CCTTSBCHHHHTTCCS
T ss_pred CCcceeCHhHccCcCC
Confidence 4455688888887774
No 13
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=45.67 E-value=5 Score=28.00 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=20.4
Q ss_pred cchhhhcccccccccCchhhhhhhhhh
Q 014614 268 KLRVCDICGAFLSVYDSDRRLADHFGG 294 (421)
Q Consensus 268 kl~VCeVCGA~Ls~~D~d~Rl~dH~~G 294 (421)
..+||.-||.-++..---.-|..|+.|
T Consensus 16 ~YRvC~~CgkPi~lsAIvdHLenhC~~ 42 (44)
T 2lo3_A 16 QYRVCEKCGKPLALTAIVDHLENHCAG 42 (44)
T ss_dssp CEEECTTTCCEEETTTHHHHHHHCCTT
T ss_pred cchhhcccCCcchHHHHHHHHHHHhcc
Confidence 458999999888776555667777765
No 14
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=43.97 E-value=9.6 Score=29.14 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=12.6
Q ss_pred CCCCCCcchhccCCCc
Q 014614 27 YYDRDVCRLYLAGLCP 42 (421)
Q Consensus 27 ~~D~~VCk~~L~G~CP 42 (421)
+.-..||++||-|.|.
T Consensus 13 ~~k~~vCk~fl~G~C~ 28 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCK 28 (72)
T ss_dssp CCCCSBCHHHHTTCCC
T ss_pred CCcCeeCHHHhcCCCC
Confidence 4456789999998886
No 15
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=42.44 E-value=7 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=24.7
Q ss_pred cchhhhcccccccccCchhhhhhhhhhhhhhcHH
Q 014614 268 KLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYM 301 (421)
Q Consensus 268 kl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~ 301 (421)
...-|++|... +.+..=+..|+.||.|.-=+
T Consensus 92 ~~~~C~~C~~~---f~s~~~~~~H~~gk~H~~~~ 122 (127)
T 1zu1_A 92 RSKCCPVCNMT---FSSPVVAESHYIGKTHIKNL 122 (127)
T ss_dssp TTTEETTTTEE---CSSHHHHHHHHTSHHHHHHH
T ss_pred CCeEcCCCCCE---eCCHHHHHHHHCCHHHHHHH
Confidence 35689999974 55778899999999997533
No 16
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=40.80 E-value=57 Score=32.19 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhc
Q 014614 208 TQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKK 243 (421)
Q Consensus 208 ~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~ 243 (421)
++..|.+ +..|-.|..+|+++||++.+.....++.
T Consensus 108 l~~li~q-iD~a~~la~~g~l~eAkk~a~~~~~~r~ 142 (347)
T 3u8p_A 108 FDILVGQ-IDDALKLANEGKVKEAQAAAEQLKTTRN 142 (347)
T ss_dssp HHHHHHH-HHHHHHHHHTTCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHH-hhHHHHhhhccchHHHHHHHHHhHhHHH
Confidence 3444544 5788899999999999999888877764
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=39.83 E-value=16 Score=29.27 Aligned_cols=17 Identities=35% Similarity=0.899 Sum_probs=12.4
Q ss_pred CCCCCCCcchhccCCCc
Q 014614 26 KYYDRDVCRLYLAGLCP 42 (421)
Q Consensus 26 ~~~D~~VCk~~L~G~CP 42 (421)
.|.-..||+.||-|.|.
T Consensus 13 ~~~~~~VCrdFlrG~C~ 29 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCS 29 (89)
T ss_dssp SSSEECBCHHHHHTCCC
T ss_pred CcchhhhchHHhcCCCC
Confidence 45556789999887775
No 18
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=45.50 E-value=6.3 Score=22.63 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=8.2
Q ss_pred chhhhcccccc
Q 014614 269 LRVCDICGAFL 279 (421)
Q Consensus 269 l~VCeVCGA~L 279 (421)
...|++||.-.
T Consensus 3 ~~~C~~C~k~f 13 (30)
T 2lvr_A 3 PYVCIHCQRQF 13 (30)
Confidence 46899999643
No 19
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.10 E-value=6.4 Score=22.60 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=7.3
Q ss_pred hhhhccccc
Q 014614 270 RVCDICGAF 278 (421)
Q Consensus 270 ~VCeVCGA~ 278 (421)
..|++||.-
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2lvt_A 3 CQCVMCGKA 11 (29)
Confidence 689999954
No 20
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=38.11 E-value=11 Score=28.50 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=14.7
Q ss_pred CCcchhccCCCcchhhHhhhhcCCCCCccccHH
Q 014614 31 DVCRLYLAGLCPHELFQLTKMDMGPCPKVHSLQ 63 (421)
Q Consensus 31 ~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hde~ 63 (421)
.||.+||-|.|+ -|.|+..|.+.
T Consensus 43 ~vC~~flkG~C~----------r~~C~y~H~~~ 65 (70)
T 3d2q_A 43 TVCMDYIKGRCS----------REKCKYFHPPA 65 (70)
T ss_dssp EBCHHHHTTCCC----------CTTCCSBCCCH
T ss_pred eeccccCcCCCC----------CCCcCeeCCHH
Confidence 456666666663 34688888654
No 21
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=36.74 E-value=8.2 Score=23.88 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.2
Q ss_pred CcchhccCCCcc
Q 014614 32 VCRLYLAGLCPH 43 (421)
Q Consensus 32 VCk~~L~G~CPh 43 (421)
.=+-+|+++|||
T Consensus 15 Ct~QDLL~lCPh 26 (26)
T 2h8b_A 15 CTQQDLLTLCPY 26 (26)
T ss_dssp BCHHHHHTTCCC
T ss_pred CcHHHHHhhCCC
Confidence 345678899997
No 22
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=36.03 E-value=12 Score=28.11 Aligned_cols=37 Identities=24% Similarity=0.561 Sum_probs=24.8
Q ss_pred cchhhhcccccccccCchhhhhhhhhhhhhhc----------HHHHHHHHHH
Q 014614 268 KLRVCDICGAFLSVYDSDRRLADHFGGKLHLG----------YMQIRDKLAE 309 (421)
Q Consensus 268 kl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G----------y~~iR~~l~e 309 (421)
+|.+|..||.|-. .-++..+|+..... |.+.|-+|+.
T Consensus 4 ~mr~C~~Cg~YTL-----k~~CP~CG~~t~~ahParfSP~Dky~~yR~~lKk 50 (60)
T 2aus_D 4 RIRKCPKCGRYTL-----KETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKR 50 (60)
T ss_dssp CCEECTTTCCEES-----SSBCTTTCSBCEESSCCCCCSCCTTHHHHHHHHH
T ss_pred cceECCCCCCEEc-----cccCcCCCCccCCCCCCCCCCCCchHHHHHHHHH
Confidence 5788888887733 34566677776433 7788776654
No 23
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.91 E-value=6 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=11.9
Q ss_pred hhhhcccccccccCchhhhhhhh
Q 014614 270 RVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
..|++||.-.. ...-|..|.
T Consensus 3 ~~C~~C~~~f~---~~~~l~~H~ 22 (29)
T 1ard_A 3 FVCEVCTRAFA---RQEHLKRHY 22 (29)
T ss_dssp CBCTTTCCBCS---SHHHHHHHH
T ss_pred eECCCCCcccC---CHHHHHHHH
Confidence 68999996433 233455553
No 24
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.40 E-value=9.2 Score=26.13 Aligned_cols=25 Identities=28% Similarity=0.725 Sum_probs=18.3
Q ss_pred chhhhcccccccccCchhhhhhhhh
Q 014614 269 LRVCDICGAFLSVYDSDRRLADHFG 293 (421)
Q Consensus 269 l~VCeVCGA~Ls~~D~d~Rl~dH~~ 293 (421)
..+|+-||..+.+.+.+.-+.=||.
T Consensus 9 ~~~C~~C~~~i~~~~~~EH~D~H~A 33 (39)
T 2i5o_A 9 QVPCEKCGSLVPVWDMPEHMDYHFA 33 (39)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHHH
T ss_pred CcccccccCcCCcccccchhhHHHH
Confidence 4799999999888765555555554
No 25
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=34.99 E-value=77 Score=32.44 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014614 125 PEVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAP 204 (421)
Q Consensus 125 eei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~veeLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (421)
+.+.++......++.+++.+-..|+.++|+.+.+++=++.. +. .+ +.
T Consensus 300 e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~---------------~~----------------lg--~~ 346 (490)
T 3n71_A 300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQE---------------PV----------------FA--DT 346 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT---------------TT----------------BC--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---------------Hh----------------cC--CC
Confidence 34555566677888888999999999999988865533211 00 00 01
Q ss_pred chhhHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhc
Q 014614 205 DARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKK 243 (421)
Q Consensus 205 ~~~~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~ 243 (421)
-+. ...-+-.-|..+..+|+.++|..+...+-....
T Consensus 347 Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 347 NLY---VLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp SHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 111 122222346778899999999999888766643
No 26
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=33.94 E-value=10 Score=31.89 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=22.1
Q ss_pred hhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
..|.||.+.+. +..-+..|+.||.|.-
T Consensus 33 ~~C~~C~v~~~---S~s~~~~H~~gkkH~~ 59 (127)
T 1zu1_A 33 TQCKVCSAVLI---SESQKLAHYQSRKHAN 59 (127)
T ss_dssp SEETTTTEECC---SHHHHHHHHHCHHHHH
T ss_pred CcCcCCCCEeC---CHHHHHHHHCcHHHHH
Confidence 58999998543 6677899999999983
No 27
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.62 E-value=7.9 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=12.3
Q ss_pred hhhhcccccccccCchhhhhhhh
Q 014614 270 RVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
..|++||.-.. ...-|..|.
T Consensus 3 ~~C~~C~k~f~---~~~~l~~H~ 22 (29)
T 1rik_A 3 FACPECPKRFM---RSDHLTLHI 22 (29)
T ss_dssp EECSSSSCEES---CSHHHHHHH
T ss_pred ccCCCCCchhC---CHHHHHHHH
Confidence 57999996433 234455564
No 28
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.20 E-value=12 Score=24.83 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.4
Q ss_pred hhhhcccccccccCchhhhhhhhhhh
Q 014614 270 RVCDICGAFLSVYDSDRRLADHFGGK 295 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK 295 (421)
.+|++|.+.|. +...|..||.-+
T Consensus 6 FiCP~C~~~l~---s~~~L~~Hye~~ 28 (34)
T 3mjh_B 6 FICPQCMKSLG---SADELFKHYEAV 28 (34)
T ss_dssp EECTTTCCEES---SHHHHHHHHHHH
T ss_pred cCCcHHHHHcC---CHHHHHHHHHhc
Confidence 68999998866 668899998543
No 29
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.16 E-value=9.1 Score=21.51 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=7.2
Q ss_pred hhhhccccc
Q 014614 270 RVCDICGAF 278 (421)
Q Consensus 270 ~VCeVCGA~ 278 (421)
..|++||.-
T Consensus 3 ~~C~~C~~~ 11 (29)
T 2m0e_A 3 HKCPHCDKK 11 (29)
T ss_dssp CCCSSCCCC
T ss_pred CcCCCCCcc
Confidence 579999954
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.10 E-value=11 Score=33.54 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=15.6
Q ss_pred ccchhhhcccccccccCchhhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFG 293 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~ 293 (421)
.+..||.|||- +-..+.+. .|.-|+
T Consensus 136 ~~~~~C~~CG~-i~~~~~p~-~CP~Cg 160 (170)
T 3pwf_A 136 KKVYICPICGY-TAVDEAPE-YCPVCG 160 (170)
T ss_dssp SCEEECTTTCC-EEESCCCS-BCTTTC
T ss_pred CCeeEeCCCCC-eeCCCCCC-CCCCCC
Confidence 35789999994 43355554 555554
No 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.75 E-value=16 Score=21.95 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=14.3
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+.+.|++||.-.. ...-|..|.
T Consensus 7 ~~~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2elr_A 7 GKTHLCDMCGKKFK---SKGTLKSHK 29 (36)
T ss_dssp CSSCBCTTTCCBCS---SHHHHHHHH
T ss_pred CCCeecCcCCCCcC---chHHHHHHH
Confidence 35689999996432 334455554
No 32
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=31.41 E-value=14 Score=31.43 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=24.6
Q ss_pred cccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 266 DQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 266 ~qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
..+.+.|.+||.+.+ +..-|..|+.+|.|..
T Consensus 47 GekpfyC~~C~K~F~---~~~~L~~H~rsK~HKr 77 (124)
T 1zr9_A 47 GGGLHRCLACARYFI---DSTNLKTHFRSKDHKK 77 (124)
T ss_dssp GGGCSEETTTTEECS---SHHHHHHHTTCHHHHH
T ss_pred CCcceEcccCcchhC---CHHHHHHHHhhhhhhH
Confidence 345799999997633 5577999999999965
No 33
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.06 E-value=19 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=12.0
Q ss_pred hhhhcccccccccCchhhhhhhh
Q 014614 270 RVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
..|++||.-.. ...-|..|.
T Consensus 2 ~~C~~C~k~f~---~~~~l~~H~ 21 (27)
T 1znf_A 2 YKCGLCERSFV---EKSALSRHQ 21 (27)
T ss_dssp CBCSSSCCBCS---SHHHHHHHG
T ss_pred ccCCCCCCcCC---CHHHHHHHH
Confidence 47999996433 233455664
No 34
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=28.82 E-value=17 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=15.0
Q ss_pred hhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 270 RVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
..|++||.-.+ ...-|..|. +.|.|
T Consensus 3 ~~C~~C~k~F~---~~~~L~~H~--~~H~~ 27 (33)
T 1rim_A 3 FACPECPKRFM---RSDHLSKHI--TLHEL 27 (33)
T ss_dssp CCCSSSCCCCS---SHHHHHHHH--HHHTT
T ss_pred ccCCCCCchhC---CHHHHHHHH--HHhCC
Confidence 57999996433 334466665 34554
No 35
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.96 E-value=2.2e+02 Score=22.01 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHH
Q 014614 135 KEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPDARTQEMINE 214 (421)
Q Consensus 135 ~~ll~e~E~lg~eG~vdea~~l~e~veeLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 214 (421)
.+++.+|=+++..|+.++|+.+....=++ ...++.. . + .+.....+..+|++
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~--------l~~alk~-e----------------~---d~~~k~~ir~K~~e 71 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIEV--------LAQLVSL-Y----------------R---DGSTAAIYEQMINE 71 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHHH-S----------------T---TSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH--------HHHHHHH-C----------------C---CHHHHHHHHHHHHH
Confidence 35667777789999999999988633221 1111111 0 0 01223447889999
Q ss_pred HHHHHHhhh
Q 014614 215 KLKKAEDLG 223 (421)
Q Consensus 215 ~l~~aE~LG 223 (421)
.+..||+|-
T Consensus 72 Y~~RAE~LK 80 (83)
T 2w2u_A 72 YKRRIEVLK 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 36
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=26.83 E-value=13 Score=30.45 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHhhccccc
Q 014614 205 DARTQEMINEKLKKAEDLGEQGMV-DEAQKALEEAEALKKLPAR 247 (421)
Q Consensus 205 ~~~~~~~I~~~l~~aE~LGeeG~V-deAqk~~~eve~lk~~~~~ 247 (421)
...|+++|.+.+++|..+...|-. .++..+..+|++|+....-
T Consensus 25 ~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeash 68 (99)
T 2lj9_A 25 EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASH 68 (99)
T ss_dssp --------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999887533 3666777888888775443
No 37
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.79 E-value=11 Score=23.90 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=14.5
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 9 ~k~~~C~~C~k~f~---~~~~L~~H~ 31 (42)
T 2en2_A 9 EKPYKCETCGARFV---QVAHLRAHV 31 (42)
T ss_dssp SCSEECTTTCCEES---SHHHHHHHT
T ss_pred CCCEeCCCcChhhC---CHHHHHHHH
Confidence 35689999996433 334466664
No 38
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.79 E-value=25 Score=22.59 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=17.1
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 10 ~k~~~C~~C~k~f~---~~~~L~~H~--~~H~~ 37 (46)
T 2eq2_A 10 GKPYQCNECGKAFS---QTSKLARHQ--RVHTG 37 (46)
T ss_dssp SCSSSCCSSCCCCS---SHHHHHHHG--GGGCC
T ss_pred CCCeECCCCCcccC---CHHHHHHHH--HHcCC
Confidence 35689999996432 334566665 34554
No 39
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.45 E-value=28 Score=21.00 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=14.0
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+.+.|++||.-.+ ...-|..|.
T Consensus 9 ~k~~~C~~C~k~f~---~~~~l~~H~ 31 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS---RSDHLALHR 31 (37)
T ss_dssp SSSBCCTTTCCCBS---SHHHHHHHH
T ss_pred CCCccCCCCCcccC---cHHHHHHHH
Confidence 35689999995332 233455553
No 40
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.40 E-value=12 Score=21.08 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=7.6
Q ss_pred hhhhcccccc
Q 014614 270 RVCDICGAFL 279 (421)
Q Consensus 270 ~VCeVCGA~L 279 (421)
..|++||.-.
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5799999643
No 41
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=25.39 E-value=10 Score=22.72 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=7.3
Q ss_pred hhhhccccc
Q 014614 270 RVCDICGAF 278 (421)
Q Consensus 270 ~VCeVCGA~ 278 (421)
..|++||.-
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 679999963
No 42
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.27 E-value=13 Score=24.01 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=14.4
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~k~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2enf_A 10 EKPYKCNECGKVFT---QNSHLVRHR 32 (46)
T ss_dssp CCSCBCSSSCCBCS---SHHHHHHHH
T ss_pred CcCeECCCCCcccC---CHHHHHHHH
Confidence 45689999996432 334455564
No 43
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=25.03 E-value=1.2e+02 Score=25.32 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhccccccCCcccCCcccccccccccccchhhhcccccccccCch
Q 014614 209 QEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSD 285 (421)
Q Consensus 209 ~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~~~~~~e~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d 285 (421)
.+.|+-|...|..+ ..++.+-|...+..+..+-... .+. ++ ..-+..+|.-||.+|+-+-|-
T Consensus 20 ~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k~-~ir-------lp------~~~KR~~Ck~C~s~LiPG~t~ 81 (120)
T 1x0t_A 20 IERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKKA-KVK-------IP------RKWKRRYCKRCHTFLIPGVNA 81 (120)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-TCC-------CC------TTTTTSBCTTTCCBCCBTTTE
T ss_pred HHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh-ccC-------CC------HHHHHHhccCCCCEeECCCce
Confidence 46788888889888 6777888888877776664311 111 11 233567999999999976553
No 44
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=13 Score=22.74 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=8.8
Q ss_pred cchhhhccccc
Q 014614 268 KLRVCDICGAF 278 (421)
Q Consensus 268 kl~VCeVCGA~ 278 (421)
+...|++||.-
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elp_A 8 RAMKCPYCDFY 18 (37)
T ss_dssp CCEECSSSSCE
T ss_pred CCeECCCCChh
Confidence 45899999954
No 45
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=20 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=14.0
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+.+.|++||.-.. ...-|..|.
T Consensus 7 ~k~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSYASA---IKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSCEES---SHHHHHHHH
T ss_pred CCCCCCCCCCcccC---CHHHHHHHH
Confidence 35689999995432 233455554
No 46
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.64 E-value=1.3e+02 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=19.8
Q ss_pred HHHHhhhhcccccCCcHHHHHHHHHH
Q 014614 135 KEKLKETDQYDYEGKTDLKIRALEVV 160 (421)
Q Consensus 135 ~~ll~e~E~lg~eG~vdea~~l~e~v 160 (421)
.+++.+|=+++..|+.++|+.+....
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~A 42 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEG 42 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566666778999999999998633
No 47
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.53 E-value=13 Score=24.02 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=14.3
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~k~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2yti_A 10 EKPYKCNECGKVFT---QNSHLARHR 32 (46)
T ss_dssp CCTTCCSSSCCCCS---SHHHHHHHH
T ss_pred CcCeECCCCCcccC---ChhHHHHHh
Confidence 35689999996433 334455554
No 48
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.49 E-value=24 Score=22.28 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=16.6
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 10 ~k~~~C~~C~k~f~---~~~~L~~H~--~~H~~ 37 (44)
T 2en7_A 10 MKPYVCNECGKAFR---SKSYLIIHT--RTHTG 37 (44)
T ss_dssp SSSSCCTTTCCCCS---SHHHHHHHH--TTTCC
T ss_pred CcCeECCCCCCccC---CHHHHHHHh--hhcCC
Confidence 35689999996433 334455665 34544
No 49
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.67 E-value=16 Score=22.76 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=13.1
Q ss_pred cchhhhcccccccccCchhhhhhhh
Q 014614 268 KLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 268 kl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
+...|++||.-.. ...-|..|.
T Consensus 5 k~~~C~~C~k~f~---~~~~L~~H~ 26 (39)
T 1njq_A 5 RSYTCSFCKREFR---SAQALGGHM 26 (39)
T ss_dssp SSEECTTTCCEES---SHHHHHHHH
T ss_pred CceECCCCCcccC---CHHHHHHHH
Confidence 3579999996433 233455553
No 50
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.65 E-value=26 Score=22.46 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=17.3
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 10 ~~~~~C~~C~k~f~---~~~~L~~H~--~~H~~ 37 (46)
T 2eov_A 10 EKPYKCSDCGKSFT---WKSRLRIHQ--KCHTG 37 (46)
T ss_dssp CCSCBCSSSCCBCS---SHHHHHHHH--HHHSC
T ss_pred CCCccCCccChhhC---CHHHHHHHH--HhcCC
Confidence 35689999996432 345566664 34544
No 51
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=13 Score=23.44 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=16.5
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 8 ~k~~~C~~C~k~f~---~~~~L~~H~--~~H~~ 35 (41)
T 2ept_A 8 QRVYECQECGKSFR---QKGSLTLHE--RIHTG 35 (41)
T ss_dssp CCCEECSSSCCEES---SHHHHHHHG--GGCCC
T ss_pred CCCeECCCCCCCcC---CHHHHHHHH--HHhCC
Confidence 35689999996433 334456664 34544
No 52
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=15 Score=23.70 Aligned_cols=28 Identities=32% Similarity=0.750 Sum_probs=16.7
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 10 ~~~~~C~~C~k~F~---~~~~L~~H~--~~H~~ 37 (46)
T 2eoe_A 10 EKPYKCNECGKVFT---QNSHLANHQ--RIHTG 37 (46)
T ss_dssp CCSSEETTTTEECS---SHHHHHHHH--GGGSC
T ss_pred CCCeECCCcChhhC---CHHHHHHHH--HHcCC
Confidence 35689999996432 334466664 34544
No 53
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.89 E-value=21 Score=21.49 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=14.4
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+.+.|++||.-.. ...-|..|.
T Consensus 7 ~k~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2elq_A 7 GKPFKCSLCEYATR---SKSNLKAHM 29 (36)
T ss_dssp CCSEECSSSSCEES---CHHHHHHHH
T ss_pred CCCccCCCCCchhC---CHHHHHHHH
Confidence 35689999996433 334455564
No 54
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.50 E-value=17 Score=23.44 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=14.3
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~k~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2ytn_A 10 KKPYKCNECGKVFT---QNSHLARHR 32 (46)
T ss_dssp CSSCBCTTTCCBCS---SHHHHHHHG
T ss_pred CcCeECCCCCCeeC---CHHHHHHHh
Confidence 35689999996433 334455564
No 55
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=22.28 E-value=51 Score=30.92 Aligned_cols=14 Identities=21% Similarity=0.864 Sum_probs=11.2
Q ss_pred CCCCCCCCcchhccC
Q 014614 25 RKYYDRDVCRLYLAG 39 (421)
Q Consensus 25 ~~~~D~~VCk~~L~G 39 (421)
-+|..|+||++| -|
T Consensus 146 Dp~lLPeiC~~Y-kG 159 (229)
T 3u9g_A 146 DPFFLPEICKSY-KG 159 (229)
T ss_dssp CGGGSCCBCTTC-CC
T ss_pred CCccCchHHHHh-CC
Confidence 358899999999 63
No 56
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.15 E-value=16 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=14.5
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~k~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2en9_A 10 KKLFKCNECKKTFT---QSSSLTVHQ 32 (46)
T ss_dssp SCCCBCTTTCCBCS---SHHHHHHHH
T ss_pred CCCEECCccCcccC---CHHHHHHHH
Confidence 35689999996433 334466664
No 57
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.09 E-value=25 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=11.6
Q ss_pred hhhhcccccccccCchhhhhhhh
Q 014614 270 RVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 270 ~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
..|++||.... ...-|..|.
T Consensus 3 ~~C~~C~k~f~---~~~~l~~H~ 22 (29)
T 2m0f_A 3 LKCRECGKQFT---TSGNLKRHL 22 (29)
T ss_dssp EECTTTSCEES---CHHHHHHHH
T ss_pred ccCCCCCCccC---ChhHHHHHH
Confidence 57999996432 233445553
No 58
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.02 E-value=14 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=14.0
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~k~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2emy_A 10 ENPYECHECGKAFS---RKYQLISHQ 32 (46)
T ss_dssp SCCEECSSSCCEES---SHHHHHHHH
T ss_pred CcCcCCCCCCcccC---cHHHHHHHH
Confidence 35689999996433 234455554
No 59
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.86 E-value=25 Score=25.34 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=16.1
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+.+.|++||.-.+ ...-|..|. ++|.|
T Consensus 30 ekp~~C~~C~k~F~---~~~~L~~H~--~~Htg 57 (60)
T 4gzn_C 30 YRPRSCPECGKCFR---DQSEVNRHL--KVHQN 57 (60)
T ss_dssp CCCEECTTTCCEES---SHHHHHHHG--GGGSC
T ss_pred CcCeECCCCCCCcC---CHHHHHHHh--CccCC
Confidence 35678888885322 334466664 45654
No 60
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.30 E-value=19 Score=19.88 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.7
Q ss_pred chhhhccccc
Q 014614 269 LRVCDICGAF 278 (421)
Q Consensus 269 l~VCeVCGA~ 278 (421)
...|++||.-
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 3689999953
No 61
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=21.70 E-value=2e+02 Score=28.73 Aligned_cols=82 Identities=6% Similarity=-0.082 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCc
Q 014614 126 EVLELSKQIKEKLKETDQYDYEGKTDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPQPLPNPPPLAPLPIPAPD 205 (421)
Q Consensus 126 ei~~l~~~I~~ll~e~E~lg~eG~vdea~~l~e~veeLk~ek~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (421)
.|..+.......+.+.......|+.++|+.+.+++=++.. +. .+ +.-
T Consensus 290 ~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~---------------~~---------lg---------~~H 336 (433)
T 3qww_A 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMS---------------SV---------FE---------DSN 336 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHT---------------TT---------BC---------TTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhh---------------Cc---------cC---------hhc
Confidence 3444445556667777777778899999888765433211 00 00 011
Q ss_pred hhhHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHhhc
Q 014614 206 ARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKK 243 (421)
Q Consensus 206 ~~~~~~I~~~l~~aE~LGeeG~VdeAqk~~~eve~lk~ 243 (421)
+.+ ..-+-.-|.....+|+.++|..+...+-....
T Consensus 337 p~~---a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 337 VYM---LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp HHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 111 12222346678899999999999988866654
No 62
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=21.46 E-value=32 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.451 Sum_probs=19.5
Q ss_pred CCCCCcchhccCCCcchhhHhhhhcCCCCCcccc
Q 014614 28 YDRDVCRLYLAGLCPHELFQLTKMDMGPCPKVHS 61 (421)
Q Consensus 28 ~D~~VCk~~L~G~CPhdLF~nTK~DlG~C~k~Hd 61 (421)
..+-||.||.=|+|++.- .||..|.
T Consensus 68 ~~~~~C~ffakG~C~~G~---------~C~y~H~ 92 (240)
T 3u1l_A 68 GQLFFCLFFAKGMCCLGP---------KCEYLHH 92 (240)
T ss_dssp TCCSBCHHHHTTCCSCGG---------GCSSBBS
T ss_pred CCCeEcCccccCCCCCCC---------CCCccCC
Confidence 356699999999998543 4998884
No 63
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.26 E-value=27 Score=22.32 Aligned_cols=28 Identities=36% Similarity=0.711 Sum_probs=17.1
Q ss_pred ccchhhhcccccccccCchhhhhhhhhhhhhhc
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHFGGKLHLG 299 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H~G 299 (421)
.+...|++||.-.. ...-|..|. +.|.|
T Consensus 10 ~k~~~C~~C~k~f~---~~~~L~~H~--~~H~~ 37 (46)
T 2eme_A 10 EKPYVCDYCGKAFG---LSAELVRHQ--RIHTG 37 (46)
T ss_dssp CCSEECSSSCCEES---SHHHHHHHH--GGGCC
T ss_pred CCCeECCCCChhhC---CHHHHHHHH--HhcCC
Confidence 35689999996433 344566665 34544
No 64
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=21.01 E-value=20 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=11.6
Q ss_pred cchhhhcccccccc
Q 014614 268 KLRVCDICGAFLSV 281 (421)
Q Consensus 268 kl~VCeVCGA~Ls~ 281 (421)
+.++|++||.++.+
T Consensus 5 ~fY~C~~CGnivev 18 (36)
T 1dxg_A 5 DVYKCELCGQVVKV 18 (36)
T ss_dssp CEEECTTTCCEEEE
T ss_pred cEEEcCCCCcEEEE
Confidence 46899999988776
No 65
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.78 E-value=25 Score=22.56 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=14.5
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+...|++||.-.. ...-|..|.
T Consensus 10 ~~~~~C~~C~k~F~---~~~~L~~H~ 32 (46)
T 2em3_A 10 EKPYECKVCSKAFT---QKAHLAQHQ 32 (46)
T ss_dssp CCSEECSSSCCEES---SHHHHHHHH
T ss_pred CcCeECCCCCcccC---CHHHHHHHH
Confidence 35689999996433 334466664
No 66
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.65 E-value=16 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=13.5
Q ss_pred ccchhhhcccccccccCchhhhhhhh
Q 014614 267 QKLRVCDICGAFLSVYDSDRRLADHF 292 (421)
Q Consensus 267 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 292 (421)
.+..+|++||.-.. ...-|..|.
T Consensus 26 ~~~h~C~~Cgk~F~---~~~~L~~H~ 48 (85)
T 2lv2_A 26 AECHLCPVCGESFA---SKGAQERHL 48 (85)
T ss_dssp CTTEECTTSCCEES---SHHHHHHHH
T ss_pred CCCEECCCCCCCcC---cHHHHhhhh
Confidence 35689999996322 333444443
No 67
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=20.30 E-value=22 Score=29.41 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.5
Q ss_pred chhhhccccc
Q 014614 269 LRVCDICGAF 278 (421)
Q Consensus 269 l~VCeVCGA~ 278 (421)
.+||+||||-
T Consensus 71 ~Y~CpiCGAT 80 (106)
T 3alr_A 71 QYKCPLCGAT 80 (106)
T ss_dssp GCCCTTTCCC
T ss_pred cccCCCCCCc
Confidence 3899999983
No 68
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.16 E-value=1.6e+02 Score=21.41 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 014614 208 TQEMINEKLKKAEDLGEQGMVDEAQKALE 236 (421)
Q Consensus 208 ~~~~I~~~l~~aE~LGeeG~VdeAqk~~~ 236 (421)
+++++..+-.++..||--|.|++-.+..+
T Consensus 7 leekvkaleekvkalggggrieelkkkwe 35 (67)
T 1lq7_A 7 LEEKVKALEEKVKALGGGGRIEELKKKWE 35 (67)
T ss_dssp HHHHHHHHHHHHHHSCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 45666666677777777777776655543
Done!