BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014615
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
Resistance Protein 2 From Zebrafish
Length = 167
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 239 WKLLYHSAMNGLSFNTFLGSISNDEGSAVLIIKDKEGHIYGGYASQPWERHGDFYGDMKS 298
W L + ++ +G+S T ++ + + +L+IKD +G I+G AS+P++ FYG ++
Sbjct: 29 WNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFYGTGET 88
Query: 299 FLFQLYPKLAIYRPTGANSNLQWCAANFSSESIPNGIGFGGRVNHFGLFLSASFDKGHTF 358
FLF YP+ Y+ TG NL + + S + FGG FGL+L G
Sbjct: 89 FLFTFYPEFEAYKWTG--DNLFFIKGDMDS------LAFGGGSGEFGLWLDGDLYHGRNH 140
Query: 359 TNTTFGNPCLSKTSQIYPEVIECW 382
+ TFGNP LS + + IE W
Sbjct: 141 SCKTFGNPMLSMKEDFFVQDIEIW 164
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 3 NSQPPPA--NPRFVSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQ-AYF---G 56
N+ PP +P +++ F E+E L LFK L++ +G I FQ A F
Sbjct: 12 NAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDG-LIHKEEFQLALFRNRN 70
Query: 57 LKGALGERMFNLVTQKRNDHKLTFEDLVVAKATYEKGTK-DEIEEFIYQLLDVNDDGVLG 115
+ +R+F++ KRN + F + V + + E +F ++L D+ G +
Sbjct: 71 RRNLFADRIFDVFDVKRN-GVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIE 129
Query: 116 RSDLESVVIAML---EIIFSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFED 172
R +L+ +V+A+L E++ S +D+++V ++ A +R ++ + ++
Sbjct: 130 REELKEMVVALLHESELVLS-----------EDMIEVMVDKAFV--QADRKNDGKIDIDE 176
Query: 173 FRSWCTLIPSARK 185
++ + +L PS K
Sbjct: 177 WKDFVSLNPSLIK 189
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 3 NSQPPPA--NPRFVSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQ-AYF---G 56
N+ PP +P +++ F E+E L LFK L++ +G I FQ A F
Sbjct: 12 NAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDG-LIHKEEFQLALFRNRN 70
Query: 57 LKGALGERMFNLVTQKRNDHKLTFEDLVVAKATYEKGTK-DEIEEFIYQLLDVNDDGVLG 115
+ +R+F++ KRN + F + V + + E +F ++L D+ G +
Sbjct: 71 RRNLFADRIFDVFDVKRN-GVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIE 129
Query: 116 RSDLESVVIAML---EIIFSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFED 172
R +L+ +V+A+L E++ S +D+++V ++ A +R ++ + ++
Sbjct: 130 REELKEMVVALLHESELVLS-----------EDMIEVMVDKAFV--QADRKNDGKIDIDE 176
Query: 173 FRSWCTLIPSARK 185
++ + +L PS K
Sbjct: 177 WKDFVSLNPSLIK 189
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 10 NPRFVSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQ-AYFGL---KGALGERM 65
+P ++ F+ E+E L LFK +++ +G I+ FQ A F + +R+
Sbjct: 32 DPELLARDTVFSVSEIEALYELFKKISSAVIDDG-LINKEEFQLALFKTNKKESLFADRV 90
Query: 66 FNLVTQKRNDHKLTFEDLVVAKATYEKGTK-DEIEEFIYQLLDVNDDGVLGRSDLESVVI 124
F+L K N L FE+ A + + D+ F +QL D+ G + R +++ +V+
Sbjct: 91 FDLFDTKHNG-ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVV 149
Query: 125 AMLEIIFSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDFRSWCTLIPSAR 184
A L +E G N +++ ++ TF + + K + E++RS PS
Sbjct: 150 ATL--------AESGMNLKDTVIEDIID-KTFEEADTKHDGK-IDKEEWRSLVLRHPSLL 199
Query: 185 K 185
K
Sbjct: 200 K 200
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 10 NPRFVSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQ-AYFGL---KGALGERM 65
+P ++ F+ E+E L LFK +++ +G I+ FQ A F + +R+
Sbjct: 1 DPELLARDTVFSVSEIEALYELFKKISSAVIDDG-LINKEEFQLALFKTNKKESLFADRV 59
Query: 66 FNLVTQKRNDHKLTFEDLVVAKATYEKGTK-DEIEEFIYQLLDVNDDGVLGRSDLESVVI 124
F+L K N L FE+ A + + D+ F +QL D+ G + R +++ +V+
Sbjct: 60 FDLFDTKHNG-ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVV 118
Query: 125 AMLEIIFSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDFRSWCTLIPSAR 184
A L +E G N +++ ++ TF + + K + E++RS PS
Sbjct: 119 ATL--------AESGMNLKDTVIEDIID-KTFEEADTKHDGK-IDKEEWRSLVLRHPSLL 168
Query: 185 K 185
K
Sbjct: 169 K 169
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 14 VSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQAYF--GLKGALGERMFNLVTQ 71
+ A +F + EL+ L FK+ N I+ +F G +FN
Sbjct: 6 LEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFK-QIYAQFFPHGDASTYAHYLFNAFDT 64
Query: 72 KRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIF 131
+ + FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 65 TQTG-SVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 123
Query: 132 SMEISERGSNSHQDIVDVFLNAATFSKNG 160
+ ++ + VDVF +K+G
Sbjct: 124 AYTYPVLAEDTPRQHVDVFFQKMDKNKDG 152
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 14 VSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQAYF--GLKGALGERMFNLVTQ 71
+ A +F + EL+ L FK+ N I+ +F G +FN
Sbjct: 42 LEAQTNFTKRELQVLYRGFKNECPSGVVNEETFK-QIYAQFFPHGDASTYAHYLFNAFDT 100
Query: 72 KRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIF 131
+ + FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 101 TQTG-SVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 159
Query: 132 SMEISERGSNSHQDIVDVFLNAATFSKNG 160
++ + VDVF +K+G
Sbjct: 160 KYTYPVLKEDTPRQHVDVFFQKMDKNKDG 188
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 55 FGLKGALGERMFNLVTQKRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVL 114
FG +FN+ + + D ++ F + + A + +GT DE + ++L D+++DG +
Sbjct: 58 FGDPTKFATFVFNVFDENK-DGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYI 116
Query: 115 GRSDLESVVIAMLEII-FSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDF 173
R+++ +V A+ +++ ++E+ E + + + +F A KN ++ ++ ++F
Sbjct: 117 TRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIF---AMMDKN----ADGKLTLQEF 169
Query: 174 RSWCTLIPS 182
+ PS
Sbjct: 170 QEGSKADPS 178
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 14 VSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQAYF--GLKGALGERMFNLVTQ 71
+ A +F + EL+ L FK+ N I+ +F G +FN
Sbjct: 9 LEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFK-QIYAQFFPHGDASTYAHYLFNAFDT 67
Query: 72 KRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIF 131
+ + FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 68 TQTG-SVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 126
Query: 132 SMEISERGSNSHQDIVDVFLNAATFSKNG 160
++ + VDVF +K+G
Sbjct: 127 KYTYPVLKEDTPRQHVDVFFQKMDKNKDG 155
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 14 VSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQAYF--GLKGALGERMFNLVTQ 71
+ A +F + EL+ L FK+ N I+ +F G +FN
Sbjct: 6 LEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFK-QIYAQFFPHGDASTYAHYLFNAFDT 64
Query: 72 KRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIF 131
+ + FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 65 TQTG-SVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 123
Query: 132 SMEISERGSNSHQDIVDVFLNAATFSKNG 160
++ + VDVF +K+G
Sbjct: 124 KYTYPVLKEDTPRQHVDVFFQKMDKNKDG 152
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 69 VTQKRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLE 128
V K N+ + FE+ + +T +GT +E + ++L D+N DG + ++ ++V ++ +
Sbjct: 71 VFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYK 130
Query: 129 IIFSM-EISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDFRSWCTLIPS 182
++ SM ++E + + +F K +++ + ++ ++FR + PS
Sbjct: 131 MMGSMVTLNEDEATPEMRVKKIF-------KLMDKNEDGYITLDEFREGSKVDPS 178
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 78 LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSM 133
+ FED VV + +GT E ++ + L D+N DG + + ++ +A+++ I+ M
Sbjct: 146 IHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEM----LAIMKSIYDM 197
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 1 MGNSQPPPANPRFVSASRSFAQHELEDLKSLFKSLAAQSQSNGRYISPSIFQAYF--GLK 58
M + P + A F + EL+ L FK+ N I+ +F G
Sbjct: 42 MATVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFK-EIYSQFFPQGDS 100
Query: 59 GALGERMFNLVTQKRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSD 118
+FN N ++FED + + +GT E + + L D+N DG + + +
Sbjct: 101 TTYAHFLFNAFDTDHNG-AVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEE 159
Query: 119 LESVVIAMLEII 130
+ ++ A+ +++
Sbjct: 160 MLDIMKAIYDMM 171
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 63 ERMFNLVTQKRNDHKLTFEDLVVAKATY-EKGTKDEIEEFIYQLLDVNDDGVLGRSDLES 121
ER+ + + L+FED + + + + T D + +++ D +DDG L R DL
Sbjct: 63 ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSR 122
Query: 122 VV 123
+V
Sbjct: 123 LV 124
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 63 ERMFNLVTQKRNDHKLTFEDLVVAKATY-EKGTKDEIEEFIYQLLDVNDDGVLGRSDLES 121
ER+ + + L+FED + + + + T D + +++ D +DDG L R DL
Sbjct: 94 ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSR 153
Query: 122 VV 123
+V
Sbjct: 154 LV 155
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 77 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 133
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F+ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 74 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 130
+D L F+ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|3JPZ|A Chain A, Crystal Structure Of Lombricine Kinase
pdb|3JPZ|B Chain B, Crystal Structure Of Lombricine Kinase
pdb|3JQ3|A Chain A, Crystal Structure Of Lombricine Kinase, Complexed With
Substrate Adp
Length = 366
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 32 FKSLAAQSQSNGR---------YISPSIFQAYFGLKGALGERMFNLVTQKRNDHKLTFED 82
++A Q + NGR Y+ GL+ ++ ++ L + FED
Sbjct: 244 LNAIAEQMKKNGREYMWNQRLGYLCACPSNLGTGLRASVHVQLHQLSKHPK------FED 297
Query: 83 LVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESV--VIAMLEIIFSMEISERGS 140
+VVA ++GT E + + D+++ L +S+ E V +I ++ + ME +
Sbjct: 298 IVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQLLIDGVKKLIDMEQALEAG 357
Query: 141 NSHQDIV 147
S D++
Sbjct: 358 KSIDDLI 364
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 34 SLAAQSQSNGRYISPSIFQAYFGLKGALGERM 65
+L AQ+Q G IS SIF+AY ++G +G+ +
Sbjct: 11 TLEAQTQGPGSMISQSIFKAY-DIRGVIGKTL 41
>pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 415
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 183 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 238
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 203 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 258
Query: 239 W-KLLYHSAMNGLSFNTFLGSISN 261
K + H A++ ++ T LGS++N
Sbjct: 259 LLKFMVHPAISSINLTTALGSLAN 282
>pdb|3O2T|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 386
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 183 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 238
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 229
Query: 239 W-KLLYHSAMNGLSFNTFLGSISN 261
K + H A++ ++ T LGS++N
Sbjct: 230 LLKFMVHPAISSINLTTALGSLAN 253
>pdb|3O2Q|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2Q|D Chain D, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2S|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72 Complex
pdb|4H3H|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3H|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3K|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
pdb|4H3K|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
Length = 351
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 183 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 238
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 229
Query: 239 W-KLLYHSAMNGLSFNTFLGSISN 261
K + H A++ ++ T LGS++N
Sbjct: 230 LLKFMVHPAISSINLTTALGSLAN 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,025,928
Number of Sequences: 62578
Number of extensions: 568603
Number of successful extensions: 1562
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 30
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)