Query 014616
Match_columns 421
No_of_seqs 162 out of 2299
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.2E-45 2.5E-49 356.7 39.4 386 2-402 64-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-32 4.4E-37 266.4 14.8 353 2-384 71-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 5.3E-29 1.8E-33 240.2 28.6 323 2-377 70-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.9E-26 6.6E-31 225.7 24.8 379 2-391 63-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 2.1E-27 7.1E-32 224.4 2.8 315 2-369 44-361 (375)
6 2xut_A Proton/peptide symporte 99.9 1.4E-22 4.7E-27 200.0 17.4 129 2-131 63-196 (524)
7 2cfq_A Lactose permease; trans 99.9 5.9E-25 2E-29 210.6 -1.2 345 2-392 52-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.1E-11 3.6E-16 119.3 11.1 165 216-391 47-213 (451)
9 3o7q_A L-fucose-proton symport 99.2 3.4E-10 1.2E-14 108.3 14.1 166 215-390 44-236 (438)
10 2gfp_A EMRD, multidrug resista 99.1 1.5E-10 5E-15 108.6 8.5 161 218-391 21-181 (375)
11 2xut_A Proton/peptide symporte 99.1 9.5E-10 3.2E-14 108.0 13.0 157 219-387 34-201 (524)
12 4aps_A DI-OR tripeptide H+ sym 99.0 6.1E-09 2.1E-13 101.2 16.3 145 227-384 49-196 (491)
13 2cfq_A Lactose permease; trans 98.9 5.6E-10 1.9E-14 106.4 5.8 134 4-138 270-405 (417)
14 4gc0_A D-xylose-proton symport 98.9 6.8E-09 2.3E-13 100.9 11.2 123 235-358 58-186 (491)
15 2g9p_A Antimicrobial peptide l 45.8 5.4 0.00019 19.4 0.3 14 12-25 2-15 (26)
16 4dve_A Biotin transporter BIOY 29.2 37 0.0013 27.7 3.0 22 2-23 102-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.2e-45 Score=356.66 Aligned_cols=386 Identities=34% Similarity=0.598 Sum_probs=294.5
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh------------------cCChhHHHHHHHHHHhhhhhh
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA------------------APDPYVLILGRLLVGLGVGIA 63 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~------------------~~s~~~l~~~R~l~G~g~g~~ 63 (421)
.++|.++|++++|+++||+|||+++.++.+++.++++++++ ++|+++++++|+++|+|.|+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999994 789999999999999999999
Q ss_pred hhhHHHHHhhcCCCCCccchhchHHHHHHHHHHHHHHHhhhcccC-------CccchHHHHhhHHHHHHHHHHhhcCCcC
Q 014616 64 SVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-------PGTWRWMLGVSAVPAIIQFVLMLFMPES 136 (421)
Q Consensus 64 ~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------~~~Wr~~f~~~~~~~l~~~~~~~~~~es 136 (421)
.+....+++|+.|+++|++..+........|.+++...+...... ...||+.+.+..++.++.++..+++|||
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 999999999999999999999999999999888887777654321 1248999999998888888888899999
Q ss_pred hHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCccee
Q 014616 137 PRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTV 216 (421)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (421)
|+|+..+++.+++.+.+++....+...++..+..+.. .+.++.......++.+.... ......+.++.+.+.+
T Consensus 224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSL---DHGRKTGGRLLMFGVGVIVI----GVMLSIFQQFVGINVV 296 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTHHHHSCCTHHHH----HHHHHHHHHHTCHHHH
T ss_pred hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHH---HhhhhhhhHHHHhcccHHHH----HHHHHHHHHHhhhhHH
Confidence 9999999999999888776654433322222221111 11111222233333333322 2223345556666777
Q ss_pred hhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcch
Q 014616 217 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY 296 (421)
Q Consensus 217 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 296 (421)
.+|.|.+.+..+.+..... ...........++.++++++.||+|||+.++.+.....++...+........ .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 368 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------P 368 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------c
Confidence 7888888888887765543 3344445567889999999999999999988777766666655554332211 1
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHH------HcCcchhhHHH
Q 014616 297 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLIL 370 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~ 370 (421)
.+..+....++...+..+.+++.+.+.+|++|++.|+++.|+.++.+++++++.+..++.+.+ ..+....|+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 233344444555566677788889999999999999999999999999999999888776533 34556788899
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHhc
Q 014616 371 AGIAVLAVVFVILFVPETQGLTFLEVEQMWKE 402 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~ 402 (421)
++++++..++.+++.||||||++||+|+.+++
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 99999998888899999999999999987655
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.98 E-value=1.3e-32 Score=266.38 Aligned_cols=353 Identities=16% Similarity=0.146 Sum_probs=243.4
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAA----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~----~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..+++++.|+++||+|||+++.++.++++++++++++ ++|++.++++|+++|++.+...+...+++.|++|+
T Consensus 71 ~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~ 150 (451)
T 1pw4_A 71 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 150 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc
Confidence 35788999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHh
Q 014616 78 EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKI 156 (421)
Q Consensus 78 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~ 156 (421)
++|++..+........|..+++.++..+....++||+.|++.++..++..+ ..+++||+|+....+++++...
T Consensus 151 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (451)
T 1pw4_A 151 KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN------ 224 (451)
T ss_dssp THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc------
Confidence 999999999999999999999888866544332499999998877766544 4567899887543221111000
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHH-cCCCChHHH
Q 014616 157 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLA 235 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 235 (421)
++ +. +. +.++++....++...++.++++.++...+..... .........+.|.++++ .|.+..+.+
T Consensus 225 ---~~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 291 (451)
T 1pw4_A 225 ---DY-PD---DY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSS 291 (451)
T ss_dssp ---C------------------CCTHHHHHHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHH
T ss_pred ---cc-cc---cc-hhhhhcccccccchHHHHHcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00 00 00 0000101111111245677888776554433222 11222334456777765 688777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHhhHHHH-HHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhh
Q 014616 236 LLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFA 312 (421)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
...... ....+++.++.+++.||+ +||+.+..+..... ++...+ .... .. .. +..... .....+..
T Consensus 292 ~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~--~~-~~~~~~-~~~~g~~~ 360 (451)
T 1pw4_A 292 WAYFLY-EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNP-AG--NP-TVDMIC-MIVIGFLI 360 (451)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCC-TT--CH-HHHHHH-HHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhc-cc--CH-HHHHHH-HHHHHHHH
Confidence 655554 455789999999999999 98887654443322 222111 1111 00 11 111111 11222223
Q ss_pred cccccccceeccccCccchhhhhhHHHHHHHHH-HHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhh
Q 014616 313 PGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 384 (421)
Q Consensus 313 ~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
.+..+..+++..|.+|++.|+++.|+.++...+ ++.+++.+.+.+.+..|+...|++.++..+++.+..++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567889999999999999999999999 999999999999998898888888888877776655544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=5.3e-29 Score=240.16 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=229.7
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSE 78 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~ 78 (421)
..++.++++++.|+++||+|||+++.++.++++++++++ ++++|++.+++.|+++|++.|...+...+++.|++|+|
T Consensus 70 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 70 FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST
T ss_pred HHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch
Confidence 357889999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CccchhchHHHHHHHHHHHHHHHhhhcc-cCCcc------------------------chHHHHhhHHHHHHHHHHhh--
Q 014616 79 VRGGLVSTNVLMITSGQFLSYLVNLAFT-EVPGT------------------------WRWMLGVSAVPAIIQFVLML-- 131 (421)
Q Consensus 79 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~------------------------Wr~~f~~~~~~~l~~~~~~~-- 131 (421)
+|++..+........|..+++.++..+. ...+. ||+.|++.+...++..+..+
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776 44444 99999877766555444332
Q ss_pred cCCcChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhc
Q 014616 132 FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFT 211 (421)
Q Consensus 132 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (421)
..||+++.. ++++ .+++...++++++++|.++...+.......
T Consensus 230 ~~p~~~~~~---~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 272 (438)
T 3o7q_A 230 KFPALQSDN---HSDA-----------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVG----- 272 (438)
T ss_dssp CCCCCTTTC---CCCS-----------------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHH-----
T ss_pred cCCcccccc---cccc-----------------------------cccchhhhHHHHHhChHHHHHHHHHHHHHH-----
Confidence 356665321 0000 001111234567788877765444322211
Q ss_pred CcceehhchHHH-HHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCC
Q 014616 212 GINTVMYYSPTI-VQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 289 (421)
Q Consensus 212 ~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (421)
.......+.|.+ .++. |.+..+.+...... ....+++.++.++++||++||+.+..+.....++.+.+.. . .
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~-~- 346 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGT-MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A-G- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---C-C-
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---c-C-
Confidence 122233455666 6665 88877766655554 4557899999999999999999877666555444433322 1 0
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhH
Q 014616 290 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFL 368 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ 368 (421)
. . +. .... ....+......+..+++..|.+|++ |+.+.+... .+.+++.+++.+.+.+.+..| +...|+
T Consensus 347 ----~-~-~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 347 ----G-H-VG-LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp ----H-H-HH-HHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred ----C-c-HH-HHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 0 0 11 1111 1222333344577778888999977 888888776 677999999999999999988 777777
Q ss_pred HHHHHHHHH
Q 014616 369 ILAGIAVLA 377 (421)
Q Consensus 369 ~~~~~~~~~ 377 (421)
+.+...++.
T Consensus 417 ~~~~~~~~~ 425 (438)
T 3o7q_A 417 IPALCFAVI 425 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.9e-26 Score=225.66 Aligned_cols=379 Identities=15% Similarity=0.092 Sum_probs=214.1
Q ss_pred chhhhHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC-
Q 014616 2 ALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV- 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~- 79 (421)
..++..++++++|+++|| +|||+++.++.++.+++++++++++|++.+++.|+++|++.|...+...++++|++|+++
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 357889999999999999 899999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcC-Cc----ChHHHHhcCCHHHHHHHH
Q 014616 80 -RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PE----SPRWLFMKSDKEKAILVL 153 (421)
Q Consensus 80 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~-~e----sp~~~~~~~~~~~~~~~~ 153 (421)
|+...+........|..+++.++..+.... +||+.|++.++..++..+...+. |+ ..+....+.++++..+..
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 666677777888899999988887765544 59999999876665554443221 11 100000011111111111
Q ss_pred HH----------------hcChhhhHHHHHHHH------HHH-HHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhh
Q 014616 154 SK----------------IYDIARLEDEIDHLS------AAA-EEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 210 (421)
Q Consensus 154 ~~----------------~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (421)
.. .....+.++...... ... .....+++.....+..+............ ....
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 297 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAV-LFWA--- 297 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHH-HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH-HHHH---
Confidence 10 000000000000000 000 00000000000000011111111111111 1111
Q ss_pred cCcceehhchHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----HhhHHHHHHHHHHHHHH
Q 014616 211 TGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWAF 284 (421)
Q Consensus 211 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~l~~~~ 284 (421)
.......+.|.+.++ .+.+....+...... .....++.++.+++.||++||+... .+.....++...+....
T Consensus 298 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 298 -IEEQGSVVLATFAAERVDSSWFPVSWFQSLN-PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp -HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH-HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred -HHhhccHHHHHHHHHHhccCccCHHHHhccc-hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111222344555554 455433333333333 3346777888899999999986543 33333333333322221
Q ss_pred hhCCCCCCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcc
Q 014616 285 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG 364 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 364 (421)
....... .... +....... ...+......+..+++..|.+|++.|+.+.|+.++...+++.+++.+.+...+ .+..
T Consensus 376 ~~~~~~~-~~~~-~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~ 451 (491)
T 4aps_A 376 ALYGTSG-KVSP-LWLVGSWA-LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEV 451 (491)
T ss_dssp HHCCCCT-TCCT-HHHHHHHH-HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTT
T ss_pred HhcCCCC-CccH-HHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHH
Confidence 1111000 0111 12222222 22222233456677889999999999999999999999999999888766554 3556
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCC
Q 014616 365 ATFLILAGIAVLAVVFVILFVPETQGL 391 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~et~~~ 391 (421)
..|.+++..+++..++.+++.|+.+++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888777777777776766554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=2.1e-27 Score=224.37 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=210.8
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCcc
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRG 81 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 81 (421)
..++..+++++.|+++||+|||+++..+.++.++++.++++++|++.+++.|+++|++.+...+....++.|+.|+|+|+
T Consensus 44 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (375)
T 2gfp_A 44 YLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR 123 (375)
T ss_dssp HHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHH-HhhcCCcChHHHHhcCCHHHHHHHHHHhcChh
Q 014616 82 GLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIA 160 (421)
Q Consensus 82 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
+..+........|..+++.++..+.+.. +||+.|++.++..++..+ ....+||+|+... +
T Consensus 124 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------- 184 (375)
T 2gfp_A 124 HANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTFSMARWMPETRPVDA---P--------------- 184 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C---------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc---c---------------
Confidence 9999999999999999999888776544 599999988877766655 4556788764310 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHH-HcCCCChHHHHHHH
Q 014616 161 RLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLS 239 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 239 (421)
++++..++++.+|+|.++...+....... .......+.|.+.+ ..|.+..+.+....
T Consensus 185 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 242 (375)
T 2gfp_A 185 -----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLA-----GIAAFEACSGVLMGAVLGLSSMTVSILFI 242 (375)
T ss_dssp -----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCSCSSHHHHHHHHHHHHHHHH
T ss_pred -----------------cccHHHHHHHHhcCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 01112234566777776654443322111 11112223333333 35666555555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHH-HHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHhhcccccc
Q 014616 240 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 318 (421)
Q Consensus 240 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 318 (421)
.. ....+++.++.+++.||.+++ ... +... ...+...+....... ...+.......+. .+......+.
T Consensus 243 ~~-~~~~~~~~~~~~~l~~r~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~-g~~~~~~~~~ 311 (375)
T 2gfp_A 243 LP-IPAAFFGAWFAGRPNKRFSTL-MWQ-SVICCLLAGLLMWIPDWFGV-------MNVWTLLVPAALF-FFGAGMLFPL 311 (375)
T ss_dssp TH-HHHHHHHHHHHHTTTTHHHHH-HHH-HHHHHHHTSSSSSHHHHHHH-------HHHHHHHHHHHHH-HHHHHHTSST
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhcc-------ccHHHHHHHHHHH-HHHHHHhhHH
Confidence 43 344677788888888887762 211 1111 111111101100000 0111111211121 2222234567
Q ss_pred cceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHH
Q 014616 319 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI 369 (421)
Q Consensus 319 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (421)
..++..|.+| +.|+++.|+.+..+.+++.+++...+.+.+..++...+.+
T Consensus 312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 312 ATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp THHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7788899998 8899999999999999999888888877766555444433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=1.4e-22 Score=199.96 Aligned_cols=129 Identities=17% Similarity=0.273 Sum_probs=112.0
Q ss_pred chhhhHHHHhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCC
Q 014616 2 ALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEV 79 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~-s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 79 (421)
..++..+++++.|+++||+ |||+++.++.++++++.+++++++ |++.+++.|+++|++.+...+...+++.|++|+++
T Consensus 63 ~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 63 FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 3567889999999999999 999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccchhch---HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhh
Q 014616 80 RGGLVST---NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLML 131 (421)
Q Consensus 80 rg~~~~~---~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~ 131 (421)
|+...+. ......+|..+++.++..+.... +||+.|++.++..++..+...
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 9866555 77788888888888877665544 599999998877666555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=5.9e-25 Score=210.64 Aligned_cols=345 Identities=11% Similarity=0.058 Sum_probs=187.9
Q ss_pred chhhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCCh-hHHHHHHHHHHhhhhhhhhhHHHHHhhcCCC
Q 014616 2 ALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIM---AAAPDP-YVLILGRLLVGLGVGIASVTAPVYIAEASPS 77 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~---~~~~s~-~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~ 77 (421)
..++..++++++|+++||+|||+++.++.+++++++... ++++.. ..++..|++.|++.|...+.....+.++.++
T Consensus 52 ~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 131 (417)
T 2cfq_A 52 ISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 357889999999999999999999999888776533211 222111 1134456666665555444444444444433
Q ss_pred --CCccchhchHHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHHhhcCCcChHHHHhcCCHHHHHHHHHH
Q 014616 78 --EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSK 155 (421)
Q Consensus 78 --~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 155 (421)
++|+...+........|..+++.++..+.. .+||+.|++.++..++..+..++.||+|+.. .+++++.
T Consensus 132 ~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------ 201 (417)
T 2cfq_A 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLFFAKTDAPSS--ATVANAV------ 201 (417)
T ss_dssp HHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS--SCSSSSS------
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHcCcccccc--ccccccc------
Confidence 234544443333344555555555544433 2599999988776555555544444333110 0000000
Q ss_pred hcChhhhHHHHHHHHHHHHHHHhhcccccHHHhhcchhHHHHHHHHHHHHHHHhhcCcceehhchHHHHHHc-CC---CC
Q 014616 156 IYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA-GF---QS 231 (421)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~~ 231 (421)
+ ++.++.+..++++++++|+++...+........ +.......|.++++. +. +.
T Consensus 202 ----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T 2cfq_A 202 ----G--------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp ----S--------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHT
T ss_pred ----c--------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCCCh
Confidence 0 000000111234567777766543322211111 111111234444332 21 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHHHHHHHh
Q 014616 232 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFF 311 (421)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+.... ......+++.++.++++||++||+.+..+.....+....+.. .. .. +.......+.. +.
T Consensus 259 ~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------~~---~~--~~~~~~~~l~~-~~ 325 (417)
T 2cfq_A 259 RVFGYVTT-MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------AT---SA--LEVVILKTLHM-FE 325 (417)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------CC---SH--HHHHHHTTHHH-HH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------hc---cH--HHHHHHHHHHH-HH
Confidence 22233333 333446788899999999999999876555443333222110 11 01 11111111111 11
Q ss_pred hcccccccceeccccCccchhhhhhHHH-HHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHhhccCCCC
Q 014616 312 APGMGPVPWTLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG 390 (421)
Q Consensus 312 ~~g~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 390 (421)
.....+..+.+.+|.+|++.|+++.+.. ++.+.+++.+++.+.+.+.+..|+...|.+.++.++++.++.+.+.||+|+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 1111233456889999999999998884 778889999999999988887777778888888887777766666677654
Q ss_pred CC
Q 014616 391 LT 392 (421)
Q Consensus 391 ~~ 392 (421)
-.
T Consensus 406 ~~ 407 (417)
T 2cfq_A 406 LS 407 (417)
T ss_dssp TC
T ss_pred hH
Confidence 33
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=1.1e-11 Score=119.31 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred ehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHh-hCCCCCCCc
Q 014616 216 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI-SGSSASSSG 294 (421)
Q Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 294 (421)
...+.|.+.++. .+..+.+........ ...++.++.|+++||+|||+.+..+.....++.++..+... .. +..
T Consensus 47 ~~~~~~~~~~~~-~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---~~~- 120 (451)
T 1pw4_A 47 FALAMPYLVEQG-FSRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS---SIA- 120 (451)
T ss_dssp HHHHHHHTTSST-TCSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS---SSS-
T ss_pred HHHHHHHHHHHh-ccHhHHHHHHHHHHH-HHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc---cHH-
Confidence 334566666777 777777777666554 47889999999999999999988777766666555543110 11 111
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcC-cchhhHHHHHH
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGI 373 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 373 (421)
...... +...+......+...++..|.+|++.|+.+.++.+....+|..+++.+.+.+.+..+ |.+.|++.+..
T Consensus 121 ----~l~~~~-~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~ 195 (451)
T 1pw4_A 121 ----VMFVLL-FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195 (451)
T ss_dssp ----HHHHHH-HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred ----HHHHHH-HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111111 111122222345666788999999999999999999999999999888888778888 99999999988
Q ss_pred HHHHHHHHHhhccCCCCC
Q 014616 374 AVLAVVFVILFVPETQGL 391 (421)
Q Consensus 374 ~~~~~~~~~~~~~et~~~ 391 (421)
.++..++.+++.||++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHhhccCCHhh
Confidence 887777676777876543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.15 E-value=3.4e-10 Score=108.30 Aligned_cols=166 Identities=17% Similarity=0.109 Sum_probs=110.5
Q ss_pred eehhchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCc
Q 014616 215 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 294 (421)
Q Consensus 215 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (421)
......|.+.++.|.+..+.+...+.... ...++.++.|+++||+|||+.++.+.....++..+........ +
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~--- 116 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYF-GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM---N--- 116 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHH-HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT---C---
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc---c---
Confidence 33445677888899999888877766554 4788999999999999999998887777666665542211111 1
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH-HHcC-----------
Q 014616 295 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-ELVG----------- 362 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g----------- 362 (421)
+ +...... +..........+...++..|.+|++.|+.+.+..++...+|..+++.+...+. +..+
T Consensus 117 -~-~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 193 (438)
T 3o7q_A 117 -Y-TLFLVGL-FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS 193 (438)
T ss_dssp -H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSC
T ss_pred -H-HHHHHHH-HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 1 1111111 11112222234555678899999999999999999999999999998887776 4433
Q ss_pred --------------cchhhHHHHHHHHHHHHHHHh-hccCCCC
Q 014616 363 --------------TGATFLILAGIAVLAVVFVIL-FVPETQG 390 (421)
Q Consensus 363 --------------~~~~~~~~~~~~~~~~~~~~~-~~~et~~ 390 (421)
|.+.|++.+...++..+..++ ..||+++
T Consensus 194 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 566776666666555444333 2455543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.10 E-value=1.5e-10 Score=108.59 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=113.4
Q ss_pred hchHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchh
Q 014616 218 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 297 (421)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (421)
...|.+.++.|.+..+.+........ ...++.+..|+++||+|||+.+..+.....++........ .+
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~- 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLL-TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS----------SL- 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHH-HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH----------HH-
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----------cH-
Confidence 34566677889888887776666554 4788999999999999999998877766666655544321 01
Q ss_pred HHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHH
Q 014616 298 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 377 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 377 (421)
+..... .+..........+...++..|.+|+++|+.+.+..+....++..+++.+.+.+.+..+|...+.+.+...++.
T Consensus 89 ~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 89 TVLIAA-SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 111111 1111122222345566788999999999999999999999999999888887777778888888888877777
Q ss_pred HHHHHhhccCCCCC
Q 014616 378 VVFVILFVPETQGL 391 (421)
Q Consensus 378 ~~~~~~~~~et~~~ 391 (421)
.+...+..||++++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 168 TFSMARWMPETRPV 181 (375)
T ss_dssp HCCCCCSSCCCSTT
T ss_pred HHHHHHHCcccCCC
Confidence 66566667887544
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.06 E-value=9.5e-10 Score=107.96 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=104.4
Q ss_pred chHHHH-HHcC------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHHHHHhhCCCC
Q 014616 219 YSPTIV-QMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSA 290 (421)
Q Consensus 219 ~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (421)
+.+.++ ++.| .+..+.+........ ...++.+++|+++||+ |||+.+..+.....++.++.... . .
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~--~ 107 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVI-GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---E--H 107 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHH-HHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---S--S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---c--c
Confidence 344444 5577 788777776666544 4788999999999999 99998877666555555444321 1 0
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccccccceeccccCccchhhhhhHH---HHHHHHHHHHHHHHHhHHHHHHcCcchhh
Q 014616 291 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGATF 367 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (421)
+ . +...... +...+......+...++..|.+|++.|+...+. .++...+|..+++.+.+.+.+..+|...|
T Consensus 108 ~----~-~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 S----V-QGFYTGL-FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp C----H-HHHHHHH-HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred c----H-HHHHHHH-HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 0 1 1111111 112222233456667888999999999876666 78888899999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 014616 368 LILAGIAVLAVVFVILFVPE 387 (421)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~e 387 (421)
.+.+...++..+..++..|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88877766665544443333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.01 E-value=6.1e-09 Score=101.24 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=100.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHHHHHHHHHHHhhCCCCCCCcchhHHHHHHHH
Q 014616 227 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 305 (421)
Q Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.|.+..+.+...+.... ...++.+++|+++|| +|||+.+..+.....++.++... ..+... . .....
T Consensus 49 ~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~----~-~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYAS-MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------PFGASA----L-FGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS------CCSTTH----H-HHHHH
T ss_pred cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------hhhHHH----H-HHHHH
Confidence 78888887776666554 478999999999999 89999988776665555444322 111111 1 11111
Q ss_pred HHHHHhhcccccccceeccccCccch--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Q 014616 306 LYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 383 (421)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 383 (421)
+ ..+......+...++..|.+|++. |+.+.+..+....++..+++.+.+.+.+..+|.+.|++.+...++..+..++
T Consensus 117 l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 117 L-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111222234566678899999988 7777777889999999999999999888899998888887776666555444
Q ss_pred h
Q 014616 384 F 384 (421)
Q Consensus 384 ~ 384 (421)
.
T Consensus 196 ~ 196 (491)
T 4aps_A 196 G 196 (491)
T ss_dssp H
T ss_pred h
Confidence 3
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.95 E-value=5.6e-10 Score=106.40 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=103.8
Q ss_pred hhhHHHHhhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCCCCccch
Q 014616 4 VGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 83 (421)
Q Consensus 4 ig~~~g~~~~g~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~s~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~ 83 (421)
++.+++.++.|+++||+|||+++..+.++.+++....++.++.+.+++..++.|++.+...+....+++|.+|++.||..
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 35567889999999999999999999988888877778888888888888899998887777788899999999999977
Q ss_pred hch-HHHHHHHHHHHHHHHhhhcccCCccchHHHHhhHHHHHHHHHH-hhcCCcChH
Q 014616 84 VST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPR 138 (421)
Q Consensus 84 ~~~-~~~~~~~g~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~l~~~~~-~~~~~esp~ 138 (421)
.+. .......|..+++.+.+.+.+.. +++..|.+.++..++..+. ....||.++
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 665 35555677777777666554433 4788888877777666554 344566544
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=6.8e-09 Score=100.85 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhCCCC----CCC--cchhHHHHHHHHHHH
Q 014616 235 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA----SSS--GVYGWIAVIGLALYI 308 (421)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~ 308 (421)
+...+... .+.++|+++.|+++||+|||+.+..+.....++.++.++........ ... ....+..+...=+..
T Consensus 58 g~~~s~~~-~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 58 GFCVASAL-IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHTHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 33334333 34689999999999999999998877766666655443211000000 000 001111111112222
Q ss_pred HHhhcccccccceeccccCccchhhhhhHHHHHHHHHHHHHHHHHhHHHH
Q 014616 309 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 358 (421)
Q Consensus 309 ~~~~~g~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.+...+..+...++..|..|++.|+...+..+....++...+........
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 23333345666788999999999999998888877777666554444333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=45.84 E-value=5.4 Score=19.43 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.1
Q ss_pred hhhhhhcccchhHH
Q 014616 12 SGGWINDAYGRKKA 25 (421)
Q Consensus 12 ~~g~l~dr~Grr~~ 25 (421)
++|.+..+||||-+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788899999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=29.17 E-value=37 Score=27.66 Aligned_cols=22 Identities=5% Similarity=-0.093 Sum_probs=18.3
Q ss_pred chhhhHHHHhhhhhhhcccchh
Q 014616 2 ALVGAIVGAASGGWINDAYGRK 23 (421)
Q Consensus 2 ~~ig~~~g~~~~g~l~dr~Grr 23 (421)
+++|+++++++.|++.||..++
T Consensus 102 YLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 102 YRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4788889999999999987654
Done!