Query 014617
Match_columns 421
No_of_seqs 457 out of 2291
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3E-36 1E-40 303.9 10.9 266 41-349 28-339 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 3.9E-30 1.3E-34 260.7 11.0 188 40-235 6-221 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 8.8E-30 3E-34 256.4 11.9 189 39-235 6-226 (359)
4 1b0u_A Histidine permease; ABC 100.0 3.5E-29 1.2E-33 242.1 10.8 188 40-235 9-240 (262)
5 3tif_A Uncharacterized ABC tra 100.0 6.4E-29 2.2E-33 236.5 11.0 187 40-235 4-232 (235)
6 2olj_A Amino acid ABC transpor 100.0 6.2E-29 2.1E-33 240.6 10.1 189 39-235 26-246 (263)
7 4g1u_C Hemin import ATP-bindin 100.0 9.8E-29 3.4E-33 239.5 10.5 193 40-235 14-235 (266)
8 1ji0_A ABC transporter; ATP bi 100.0 1.2E-28 4E-33 235.3 10.7 188 40-235 9-226 (240)
9 2yyz_A Sugar ABC transporter, 100.0 1.6E-28 5.5E-33 247.4 12.0 188 40-235 6-221 (359)
10 2pcj_A ABC transporter, lipopr 100.0 2E-28 6.8E-33 231.4 10.6 182 40-230 7-221 (224)
11 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-29 1.3E-33 243.5 5.8 188 40-235 10-231 (275)
12 1v43_A Sugar-binding transport 99.9 2.4E-28 8.1E-33 247.3 11.5 189 39-235 13-229 (372)
13 2it1_A 362AA long hypothetical 99.9 2E-28 6.9E-33 247.0 10.9 188 40-235 6-221 (362)
14 1g29_1 MALK, maltose transport 99.9 2.4E-28 8.2E-33 247.4 11.3 188 40-235 6-227 (372)
15 1z47_A CYSA, putative ABC-tran 99.9 1.6E-28 5.5E-33 247.0 8.6 189 39-235 16-233 (355)
16 1vpl_A ABC transporter, ATP-bi 99.9 2.2E-28 7.6E-33 235.8 8.9 189 39-235 17-233 (256)
17 3d31_A Sulfate/molybdate ABC t 99.9 2.5E-28 8.5E-33 245.2 9.6 187 40-235 4-215 (348)
18 1oxx_K GLCV, glucose, ABC tran 99.9 2E-28 6.7E-33 246.4 8.1 188 40-235 6-228 (353)
19 1g6h_A High-affinity branched- 99.9 1.8E-28 6.3E-33 236.2 7.3 187 40-234 10-239 (257)
20 2onk_A Molybdate/tungstate ABC 99.9 2.3E-27 7.9E-32 226.6 11.6 185 40-235 4-214 (240)
21 3nh6_A ATP-binding cassette SU 99.9 7.2E-28 2.5E-32 237.9 7.5 220 7-236 20-276 (306)
22 2ihy_A ABC transporter, ATP-bi 99.9 1.7E-27 5.8E-32 232.4 4.3 188 40-235 24-250 (279)
23 2yz2_A Putative ABC transporte 99.9 5E-27 1.7E-31 227.3 7.1 188 40-235 5-225 (266)
24 2ixe_A Antigen peptide transpo 99.9 8.1E-27 2.8E-31 226.6 8.3 186 40-235 19-243 (271)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.4E-26 4.7E-31 222.3 8.9 183 40-230 6-226 (250)
26 2ff7_A Alpha-hemolysin translo 99.9 3.9E-27 1.3E-31 225.9 4.4 187 38-235 8-230 (247)
27 1mv5_A LMRA, multidrug resista 99.9 7.4E-27 2.5E-31 223.2 4.5 185 40-235 4-224 (243)
28 2nq2_C Hypothetical ABC transp 99.9 2.8E-26 9.5E-31 220.7 8.3 180 40-234 7-214 (253)
29 3gd7_A Fusion complex of cysti 99.9 9.2E-27 3.1E-31 237.0 2.5 187 39-235 21-240 (390)
30 2zu0_C Probable ATP-dependent 99.9 2.2E-26 7.6E-31 223.0 4.6 188 40-235 23-252 (267)
31 2qi9_C Vitamin B12 import ATP- 99.9 2.7E-26 9.3E-31 220.4 4.3 175 51-234 14-219 (249)
32 1sgw_A Putative ABC transporte 99.9 3.3E-26 1.1E-30 215.1 2.5 173 38-219 11-204 (214)
33 2pjz_A Hypothetical protein ST 99.9 1.5E-25 5E-30 216.9 6.6 185 40-235 4-213 (263)
34 2pze_A Cystic fibrosis transme 99.9 2.4E-25 8.2E-30 210.9 7.3 180 40-235 9-216 (229)
35 2ghi_A Transport protein; mult 99.9 1.2E-25 4.2E-30 217.0 4.4 187 39-235 19-240 (260)
36 2cbz_A Multidrug resistance-as 99.9 8E-26 2.7E-30 215.4 2.6 180 40-235 6-215 (237)
37 2yl4_A ATP-binding cassette SU 99.9 1.6E-24 5.3E-29 231.8 9.4 189 38-236 342-569 (595)
38 3qf4_A ABC transporter, ATP-bi 99.9 7.8E-25 2.7E-29 233.8 6.3 189 38-236 342-565 (587)
39 3b5x_A Lipid A export ATP-bind 99.9 1.5E-24 5.1E-29 231.3 8.2 189 38-236 342-566 (582)
40 4a82_A Cystic fibrosis transme 99.9 9.6E-25 3.3E-29 232.7 4.3 189 38-236 340-563 (578)
41 3qf4_B Uncharacterized ABC tra 99.9 1.4E-24 4.7E-29 232.4 4.0 189 38-236 355-577 (598)
42 3b60_A Lipid A export ATP-bind 99.9 1.7E-24 5.6E-29 231.0 3.9 188 38-235 342-565 (582)
43 4f4c_A Multidrug resistance pr 99.9 4E-24 1.4E-28 246.7 -1.9 191 37-236 1076-1303(1321)
44 2bbs_A Cystic fibrosis transme 99.9 1.1E-23 3.8E-28 206.5 1.2 177 40-235 43-245 (290)
45 3g5u_A MCG1178, multidrug resi 99.9 1.8E-22 6.3E-27 232.3 5.4 190 37-236 387-612 (1284)
46 4f4c_A Multidrug resistance pr 99.8 1.6E-22 5.5E-27 233.3 3.6 215 12-236 386-640 (1321)
47 3g5u_A MCG1178, multidrug resi 99.8 4.5E-22 1.6E-26 229.1 4.4 189 38-236 1031-1257(1284)
48 1yqt_A RNAse L inhibitor; ATP- 99.8 1.4E-20 4.7E-25 199.1 8.6 177 40-231 290-487 (538)
49 3bk7_A ABC transporter ATP-bin 99.8 1.6E-20 5.5E-25 201.0 7.0 177 40-231 360-557 (607)
50 3ozx_A RNAse L inhibitor; ATP 99.8 5.3E-20 1.8E-24 194.6 10.0 171 40-224 272-462 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 2.3E-20 7.8E-25 197.4 1.8 172 39-224 23-234 (538)
52 3bk7_A ABC transporter ATP-bin 99.8 4.2E-20 1.4E-24 197.8 2.8 170 41-224 95-304 (607)
53 3j16_B RLI1P; ribosome recycli 99.8 1.9E-19 6.4E-24 192.7 6.9 176 41-235 350-557 (608)
54 2iw3_A Elongation factor 3A; a 99.8 9.1E-20 3.1E-24 202.9 2.3 179 40-230 674-980 (986)
55 2iw3_A Elongation factor 3A; a 99.8 7.1E-19 2.4E-23 195.8 9.0 182 39-235 437-633 (986)
56 3tqc_A Pantothenate kinase; bi 99.8 1.8E-20 6.3E-25 186.0 -3.6 205 37-241 60-309 (321)
57 3ux8_A Excinuclease ABC, A sub 99.8 1.7E-19 5.9E-24 195.2 3.6 178 49-235 30-296 (670)
58 1sq5_A Pantothenate kinase; P- 99.7 1.1E-18 3.7E-23 171.9 3.6 178 61-242 78-298 (308)
59 3c8u_A Fructokinase; YP_612366 99.7 1.1E-17 3.9E-22 154.8 5.4 172 61-238 20-206 (208)
60 3ux8_A Excinuclease ABC, A sub 99.7 7.3E-18 2.5E-22 182.5 1.8 72 158-235 549-638 (670)
61 3asz_A Uridine kinase; cytidin 99.6 9.1E-17 3.1E-21 148.1 6.6 178 61-242 4-189 (211)
62 2npi_A Protein CLP1; CLP1-PCF1 99.6 7.9E-19 2.7E-23 182.2 -8.9 162 55-232 130-333 (460)
63 2jeo_A Uridine-cytidine kinase 99.6 1.2E-16 3.9E-21 151.8 5.6 182 47-240 9-215 (245)
64 3j16_B RLI1P; ribosome recycli 99.6 2.9E-17 1E-21 175.7 1.5 170 41-224 81-297 (608)
65 3ozx_A RNAse L inhibitor; ATP 99.6 6.7E-17 2.3E-21 170.8 -0.0 149 61-224 23-213 (538)
66 3aez_A Pantothenate kinase; tr 99.6 7.4E-16 2.5E-20 152.3 5.7 212 24-241 43-300 (312)
67 3b9q_A Chloroplast SRP recepto 99.5 5.1E-16 1.8E-20 152.8 0.5 162 52-226 89-284 (302)
68 2ga8_A Hypothetical 39.9 kDa p 99.5 1.7E-15 5.8E-20 151.7 -1.3 143 94-238 157-349 (359)
69 2og2_A Putative signal recogni 99.5 3.2E-15 1.1E-19 150.5 0.6 159 54-225 148-340 (359)
70 3pih_A Uvrabc system protein A 99.5 8.2E-15 2.8E-19 162.8 3.0 73 158-236 811-901 (916)
71 2vf7_A UVRA2, excinuclease ABC 99.5 1.2E-14 4.1E-19 160.2 3.2 72 158-235 736-825 (842)
72 2r6f_A Excinuclease ABC subuni 99.5 1.9E-14 6.3E-19 159.6 3.7 72 158-235 851-940 (972)
73 1odf_A YGR205W, hypothetical 3 99.5 3E-14 1E-18 139.4 4.8 172 65-238 30-274 (290)
74 3b85_A Phosphate starvation-in 99.4 2E-16 6.9E-21 147.6 -11.2 135 48-207 11-152 (208)
75 2ygr_A Uvrabc system protein A 99.4 3.4E-14 1.1E-18 158.0 3.5 72 158-235 869-958 (993)
76 4aby_A DNA repair protein RECN 99.4 8.7E-14 3E-18 141.2 5.2 65 158-228 301-379 (415)
77 1a7j_A Phosphoribulokinase; tr 99.4 3.7E-14 1.3E-18 138.6 -1.0 169 66-235 5-204 (290)
78 4gp7_A Metallophosphoesterase; 99.4 4.3E-14 1.5E-18 127.1 -1.0 116 55-193 1-119 (171)
79 1znw_A Guanylate kinase, GMP k 99.4 4.6E-15 1.6E-19 137.1 -7.6 158 49-222 8-202 (207)
80 2v9p_A Replication protein E1; 99.4 8.1E-16 2.8E-20 151.5 -13.6 153 40-235 104-264 (305)
81 1z6g_A Guanylate kinase; struc 99.3 1.7E-14 6E-19 134.8 -5.3 65 50-120 10-82 (218)
82 1uj2_A Uridine-cytidine kinase 99.3 7.6E-13 2.6E-17 125.9 5.7 174 64-238 20-211 (252)
83 1htw_A HI0065; nucleotide-bind 99.3 8.2E-15 2.8E-19 131.0 -7.4 84 42-129 12-97 (158)
84 1tq4_A IIGP1, interferon-induc 99.3 3.1E-15 1.1E-19 153.1 -11.9 141 50-197 36-206 (413)
85 1rz3_A Hypothetical protein rb 99.3 1.2E-13 4.1E-18 127.1 -1.1 168 61-240 20-200 (201)
86 3sop_A Neuronal-specific septi 99.3 1.7E-13 5.7E-18 132.7 -1.0 126 67-201 3-138 (270)
87 2dpy_A FLII, flagellum-specifi 99.3 2.4E-14 8.2E-19 147.7 -7.5 174 41-236 135-343 (438)
88 2pt7_A CAG-ALFA; ATPase, prote 99.2 1.6E-13 5.3E-18 136.6 -4.5 125 51-224 159-290 (330)
89 3szr_A Interferon-induced GTP- 99.2 4.1E-12 1.4E-16 136.1 4.9 144 68-231 47-231 (608)
90 1tf7_A KAIC; homohexamer, hexa 99.2 5E-13 1.7E-17 140.6 -5.2 66 48-116 23-98 (525)
91 1ye8_A Protein THEP1, hypothet 99.2 2.6E-12 8.8E-17 116.7 -0.6 128 68-217 2-152 (178)
92 4a74_A DNA repair and recombin 99.1 3.1E-12 1.1E-16 118.2 -0.9 66 59-128 21-95 (231)
93 1rj9_A FTSY, signal recognitio 99.1 9.6E-12 3.3E-16 122.4 1.8 67 62-131 101-181 (304)
94 2ehv_A Hypothetical protein PH 99.1 2E-12 6.8E-17 121.0 -3.2 149 59-223 26-207 (251)
95 2eyu_A Twitching motility prot 99.1 1.6E-12 5.4E-17 125.2 -4.0 125 51-223 15-147 (261)
96 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 3.5E-11 1.2E-15 121.1 3.8 70 158-228 285-364 (365)
97 1cr0_A DNA primase/helicase; R 99.0 1.7E-11 5.9E-16 118.8 -0.6 46 50-98 22-69 (296)
98 2o8b_B DNA mismatch repair pro 99.0 1.4E-11 4.8E-16 138.7 -2.9 149 44-227 762-930 (1022)
99 4e22_A Cytidylate kinase; P-lo 99.0 4.9E-11 1.7E-15 113.7 -1.0 172 61-241 25-228 (252)
100 1e69_A Chromosome segregation 98.9 3.2E-10 1.1E-14 111.9 3.8 66 158-224 225-299 (322)
101 2yhs_A FTSY, cell division pro 98.9 3E-10 1E-14 118.2 3.2 76 53-131 283-372 (503)
102 2gza_A Type IV secretion syste 98.9 4E-10 1.4E-14 113.2 2.2 76 53-131 165-249 (361)
103 2qnr_A Septin-2, protein NEDD5 98.9 1.1E-10 3.8E-15 114.4 -2.1 77 41-127 2-84 (301)
104 2i3b_A HCR-ntpase, human cance 98.8 2.2E-11 7.6E-16 111.7 -8.4 49 63-115 1-54 (189)
105 3tr0_A Guanylate kinase, GMP k 98.8 6.3E-10 2.2E-14 101.1 1.0 64 57-126 1-71 (205)
106 2qm8_A GTPase/ATPase; G protei 98.8 1.2E-10 4E-15 116.1 -4.4 75 43-120 35-121 (337)
107 1tf7_A KAIC; homohexamer, hexa 98.8 4.3E-10 1.5E-14 118.2 -1.2 139 57-226 275-445 (525)
108 3jvv_A Twitching mobility prot 98.8 3.4E-10 1.2E-14 113.7 -2.3 120 59-224 119-246 (356)
109 3euj_A Chromosome partition pr 98.8 1.6E-09 5.5E-14 112.7 2.1 51 50-104 17-68 (483)
110 3thx_A DNA mismatch repair pro 98.8 1E-09 3.4E-14 122.5 0.4 147 48-236 647-812 (934)
111 2obl_A ESCN; ATPase, hydrolase 98.8 2E-09 6.7E-14 107.8 2.4 57 42-102 50-108 (347)
112 1ewq_A DNA mismatch repair pro 98.7 8.2E-10 2.8E-14 121.0 -2.3 122 48-207 564-691 (765)
113 2w0m_A SSO2452; RECA, SSPF, un 98.7 3.3E-10 1.1E-14 104.3 -4.8 47 51-100 10-58 (235)
114 2qag_C Septin-7; cell cycle, c 98.7 5.5E-10 1.9E-14 114.4 -3.7 142 41-201 15-165 (418)
115 1s96_A Guanylate kinase, GMP k 98.7 2.6E-09 8.9E-14 100.0 1.2 62 59-123 12-79 (219)
116 1zp6_A Hypothetical protein AT 98.7 7.5E-09 2.6E-13 93.0 3.9 65 59-129 5-74 (191)
117 1u0l_A Probable GTPase ENGC; p 98.7 2.5E-09 8.4E-14 104.7 0.5 57 59-118 165-232 (301)
118 3e70_C DPA, signal recognition 98.7 7.2E-09 2.5E-13 102.9 3.6 68 61-131 127-208 (328)
119 2qag_B Septin-6, protein NEDD5 98.7 6E-10 2E-14 114.2 -4.4 81 44-129 22-105 (427)
120 1wb9_A DNA mismatch repair pro 98.7 1.9E-09 6.5E-14 118.7 -1.4 144 48-230 593-751 (800)
121 2bbw_A Adenylate kinase 4, AK4 98.6 3.6E-09 1.2E-13 99.8 0.4 65 62-129 26-97 (246)
122 1p9r_A General secretion pathw 98.6 4.2E-09 1.4E-13 107.9 -2.0 86 42-132 148-260 (418)
123 1cke_A CK, MSSA, protein (cyti 98.6 6.7E-09 2.3E-13 95.9 -0.5 79 160-240 124-205 (227)
124 2yv5_A YJEQ protein; hydrolase 98.6 2.6E-08 9E-13 97.5 3.6 63 60-127 162-240 (302)
125 1t9h_A YLOQ, probable GTPase E 98.5 1.4E-08 4.8E-13 100.0 1.6 67 58-128 168-248 (307)
126 2qt1_A Nicotinamide riboside k 98.5 1.8E-07 6.3E-12 85.4 9.0 121 59-192 17-144 (207)
127 1pzn_A RAD51, DNA repair and r 98.5 3.3E-09 1.1E-13 106.1 -4.1 114 52-191 119-247 (349)
128 4eun_A Thermoresistant glucoki 98.5 2.8E-08 9.6E-13 90.7 1.1 65 58-128 24-94 (200)
129 3lnc_A Guanylate kinase, GMP k 98.4 7.3E-08 2.5E-12 89.8 2.6 38 51-91 15-53 (231)
130 3thx_B DNA mismatch repair pro 98.4 3.6E-08 1.2E-12 109.8 0.1 39 49-90 659-697 (918)
131 3d3q_A TRNA delta(2)-isopenten 98.4 1.3E-08 4.5E-13 101.4 -3.5 151 67-227 8-162 (340)
132 2j41_A Guanylate kinase; GMP, 98.4 1.5E-07 5.2E-12 85.2 3.8 33 59-94 2-35 (207)
133 2bdt_A BH3686; alpha-beta prot 98.4 7.1E-08 2.4E-12 86.8 1.4 61 68-130 4-65 (189)
134 2x8a_A Nuclear valosin-contain 98.3 1.8E-08 6.2E-13 97.2 -3.4 61 48-114 31-98 (274)
135 3uie_A Adenylyl-sulfate kinase 98.3 1.8E-08 6.2E-13 92.0 -3.2 60 41-103 3-64 (200)
136 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 2.7E-08 9.3E-13 101.0 -2.8 149 60-227 17-203 (392)
137 2oap_1 GSPE-2, type II secreti 98.3 8.5E-08 2.9E-12 100.6 0.4 49 51-102 248-297 (511)
138 1qhl_A Protein (cell division 98.3 1.3E-08 4.6E-13 95.9 -5.4 42 58-103 23-65 (227)
139 2ewv_A Twitching motility prot 98.3 8.9E-08 3E-12 96.5 -0.1 57 52-113 127-188 (372)
140 2rcn_A Probable GTPase ENGC; Y 98.3 3.3E-07 1.1E-11 91.9 3.8 70 53-126 206-281 (358)
141 3qkt_A DNA double-strand break 98.3 1.4E-07 4.9E-12 93.5 1.0 50 173-222 270-327 (339)
142 3nwj_A ATSK2; P loop, shikimat 98.3 6.2E-08 2.1E-12 92.5 -1.6 47 41-90 21-72 (250)
143 2kjq_A DNAA-related protein; s 98.2 5.6E-07 1.9E-11 78.9 4.0 35 62-99 35-71 (149)
144 3vaa_A Shikimate kinase, SK; s 98.2 6E-07 2E-11 81.7 3.1 39 49-90 11-49 (199)
145 2f6r_A COA synthase, bifunctio 98.1 6E-07 2E-11 86.8 2.2 73 159-241 181-253 (281)
146 2f1r_A Molybdopterin-guanine d 98.1 5.9E-07 2E-11 80.8 1.5 35 68-102 4-42 (171)
147 1nlf_A Regulatory protein REPA 98.1 2.6E-07 8.7E-12 88.7 -2.2 28 60-90 27-54 (279)
148 3a00_A Guanylate kinase, GMP k 98.1 1.5E-06 5.1E-11 78.3 3.0 24 68-91 3-26 (186)
149 1zu4_A FTSY; GTPase, signal re 98.1 1.7E-06 5.7E-11 85.5 3.6 75 53-130 95-187 (320)
150 1knq_A Gluconate kinase; ALFA/ 98.1 5.9E-07 2E-11 79.6 0.2 37 61-103 6-42 (175)
151 1lw7_A Transcriptional regulat 98.1 1E-06 3.4E-11 88.1 1.9 43 53-98 158-207 (365)
152 1kgd_A CASK, peripheral plasma 98.0 3E-06 1E-10 75.9 4.0 34 62-98 4-39 (180)
153 1lvg_A Guanylate kinase, GMP k 98.0 2.2E-06 7.5E-11 78.3 2.9 28 61-91 2-29 (198)
154 1pui_A ENGB, probable GTP-bind 98.0 6.4E-07 2.2E-11 81.1 -0.8 44 41-90 7-50 (210)
155 3kta_A Chromosome segregation 98.0 2.6E-06 9E-11 75.8 3.1 36 54-93 18-54 (182)
156 2grj_A Dephospho-COA kinase; T 98.0 1.3E-06 4.3E-11 80.1 0.5 122 66-195 12-147 (192)
157 1n0w_A DNA repair protein RAD5 97.9 1.2E-05 4E-10 74.3 5.3 40 60-102 21-68 (243)
158 1sxj_E Activator 1 40 kDa subu 97.9 2.2E-05 7.5E-10 77.0 7.4 41 61-102 32-74 (354)
159 3ec2_A DNA replication protein 97.8 3.1E-06 1E-10 75.4 0.7 35 57-94 32-67 (180)
160 1oix_A RAS-related protein RAB 97.8 1.6E-05 5.6E-10 71.3 5.5 38 65-102 28-77 (191)
161 3tau_A Guanylate kinase, GMP k 97.8 1E-05 3.4E-10 74.3 4.2 28 61-91 6-33 (208)
162 1udx_A The GTP-binding protein 97.8 8E-06 2.7E-10 83.5 3.7 34 53-89 147-180 (416)
163 3r20_A Cytidylate kinase; stru 97.8 5.2E-07 1.8E-11 85.3 -5.0 65 174-239 142-209 (233)
164 1nij_A Hypothetical protein YJ 97.8 6.3E-06 2.2E-10 81.0 2.2 38 67-104 5-51 (318)
165 2vp4_A Deoxynucleoside kinase; 97.7 7E-06 2.4E-10 76.5 1.7 38 59-102 16-53 (230)
166 1kag_A SKI, shikimate kinase I 97.7 1.4E-05 4.6E-10 70.3 3.1 23 68-90 6-28 (173)
167 1ls1_A Signal recognition part 97.7 4.3E-06 1.5E-10 81.4 -0.8 56 41-103 80-136 (295)
168 1svm_A Large T antigen; AAA+ f 97.7 7.8E-06 2.7E-10 82.5 0.8 61 50-115 156-218 (377)
169 3cr8_A Sulfate adenylyltranfer 97.6 1.5E-05 5E-10 84.4 2.5 42 59-103 365-409 (552)
170 3ney_A 55 kDa erythrocyte memb 97.6 2.6E-05 8.9E-10 71.8 3.9 30 59-91 15-44 (197)
171 1vma_A Cell division protein F 97.6 1.5E-05 5.2E-10 78.2 2.3 45 56-103 97-142 (306)
172 1in4_A RUVB, holliday junction 97.6 2.1E-06 7.1E-11 84.8 -4.1 86 42-129 23-124 (334)
173 1ixz_A ATP-dependent metallopr 97.6 1.2E-05 3.9E-10 75.7 1.2 77 46-128 34-118 (254)
174 1iy2_A ATP-dependent metallopr 97.6 1.4E-05 4.8E-10 76.4 1.2 81 42-128 54-142 (278)
175 2f9l_A RAB11B, member RAS onco 97.6 5.6E-05 1.9E-09 67.9 5.1 37 66-102 5-53 (199)
176 2pez_A Bifunctional 3'-phospho 97.6 1.8E-05 6.3E-10 70.2 1.7 39 62-103 4-44 (179)
177 1jjv_A Dephospho-COA kinase; P 97.5 4.1E-05 1.4E-09 69.4 3.6 23 67-89 3-25 (206)
178 2cvh_A DNA repair and recombin 97.5 5.4E-05 1.8E-09 68.8 3.8 38 59-100 16-53 (220)
179 1m7g_A Adenylylsulfate kinase; 97.4 3.5E-05 1.2E-09 70.5 1.6 40 60-102 22-64 (211)
180 1y63_A LMAJ004144AAA protein; 97.4 7.3E-05 2.5E-09 66.9 3.4 43 55-100 2-44 (184)
181 2o5v_A DNA replication and rep 97.4 5.3E-05 1.8E-09 75.9 2.7 76 159-235 272-354 (359)
182 2zr9_A Protein RECA, recombina 97.4 0.00037 1.3E-08 69.4 8.8 39 59-100 57-97 (349)
183 3k1j_A LON protease, ATP-depen 97.4 2.5E-05 8.4E-10 83.3 -0.1 59 40-101 37-97 (604)
184 2if2_A Dephospho-COA kinase; a 97.4 8.8E-05 3E-09 67.0 3.3 31 68-100 3-33 (204)
185 1w1w_A Structural maintenance 97.4 0.0001 3.5E-09 75.0 4.2 33 58-93 21-54 (430)
186 2qor_A Guanylate kinase; phosp 97.3 9.3E-05 3.2E-09 67.3 3.2 29 60-91 9-37 (204)
187 3m6a_A ATP-dependent protease 97.3 1.1E-05 3.6E-10 85.2 -4.1 51 47-101 93-144 (543)
188 2p67_A LAO/AO transport system 97.3 3.3E-05 1.1E-09 76.5 -0.3 48 48-98 41-89 (341)
189 3lda_A DNA repair protein RAD5 97.3 0.00014 4.9E-09 73.8 4.3 41 59-102 174-222 (400)
190 2px0_A Flagellar biosynthesis 97.3 8.7E-05 3E-09 72.3 2.6 31 61-94 103-134 (296)
191 4eaq_A DTMP kinase, thymidylat 97.3 0.0001 3.4E-09 68.9 2.7 37 52-91 12-51 (229)
192 3t61_A Gluconokinase; PSI-biol 97.3 0.00011 3.6E-09 66.5 2.7 23 68-90 20-42 (202)
193 1uf9_A TT1252 protein; P-loop, 97.2 0.00019 6.4E-09 64.3 3.7 25 65-89 7-31 (203)
194 3kb2_A SPBC2 prophage-derived 97.2 0.00018 6E-09 62.6 3.4 23 68-90 3-25 (173)
195 1m2o_B GTP-binding protein SAR 97.2 0.00028 9.7E-09 62.9 4.8 35 51-89 12-46 (190)
196 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00016 5.5E-09 63.1 2.8 23 68-90 25-47 (149)
197 2www_A Methylmalonic aciduria 97.2 0.00012 4.2E-09 72.8 2.3 36 67-102 75-111 (349)
198 2dr3_A UPF0273 protein PH0284; 97.2 0.00028 9.5E-09 65.0 4.4 41 57-100 17-59 (247)
199 1vht_A Dephospho-COA kinase; s 97.1 0.00023 7.7E-09 65.1 3.8 23 66-88 4-26 (218)
200 1qhx_A CPT, protein (chloramph 97.1 0.00021 7.1E-09 62.9 3.4 24 68-91 5-28 (178)
201 1ly1_A Polynucleotide kinase; 97.1 0.00026 8.7E-09 62.0 3.7 23 66-88 2-24 (181)
202 3lw7_A Adenylate kinase relate 97.1 0.00022 7.6E-09 61.6 3.2 23 67-90 2-24 (179)
203 1mky_A Probable GTP-binding pr 97.1 0.0006 2.1E-08 69.6 6.8 38 65-102 179-229 (439)
204 1np6_A Molybdopterin-guanine d 97.1 0.0003 1E-08 63.2 3.8 33 68-100 8-44 (174)
205 2yvu_A Probable adenylyl-sulfa 97.1 0.00018 6.1E-09 64.2 2.2 37 61-100 11-49 (186)
206 4i1u_A Dephospho-COA kinase; s 97.0 0.0003 1E-08 65.3 3.4 72 159-240 112-184 (210)
207 2p5t_B PEZT; postsegregational 97.0 0.00024 8.1E-09 67.1 2.8 37 65-102 31-67 (253)
208 3hr8_A Protein RECA; alpha and 97.0 0.00036 1.2E-08 69.8 4.1 53 60-115 58-116 (356)
209 2ze6_A Isopentenyl transferase 97.0 0.00031 1.1E-08 66.5 3.5 33 68-101 3-35 (253)
210 3ice_A Transcription terminati 97.0 0.00018 6E-09 72.9 1.7 72 13-90 111-198 (422)
211 3cm0_A Adenylate kinase; ATP-b 97.0 0.00031 1.1E-08 62.2 3.0 23 68-90 6-28 (186)
212 2ffh_A Protein (FFH); SRP54, s 97.0 0.00027 9.2E-09 72.3 2.9 57 40-103 79-136 (425)
213 1f6b_A SAR1; gtpases, N-termin 97.0 0.00011 3.6E-09 66.3 -0.1 35 51-89 14-48 (198)
214 2wjg_A FEOB, ferrous iron tran 97.0 0.00065 2.2E-08 59.7 5.0 24 66-89 7-30 (188)
215 1tev_A UMP-CMP kinase; ploop, 97.0 0.00044 1.5E-08 61.2 3.7 25 66-90 3-27 (196)
216 1sxj_C Activator 1 40 kDa subu 96.9 5.7E-05 1.9E-09 74.2 -2.9 50 43-93 24-74 (340)
217 1gvn_B Zeta; postsegregational 96.9 0.00055 1.9E-08 66.1 4.0 35 65-100 32-66 (287)
218 1kht_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 60.4 3.7 23 68-90 5-27 (192)
219 2jaq_A Deoxyguanosine kinase; 96.9 0.00052 1.8E-08 61.3 3.5 23 68-90 2-24 (205)
220 2wji_A Ferrous iron transport 96.9 0.00057 1.9E-08 59.3 3.6 25 66-90 3-27 (165)
221 2rhm_A Putative kinase; P-loop 96.9 0.00057 2E-08 60.6 3.6 24 67-90 6-29 (193)
222 1j8m_F SRP54, signal recogniti 96.8 0.00021 7.2E-09 69.6 0.5 45 54-102 89-135 (297)
223 2vf7_A UVRA2, excinuclease ABC 96.8 0.00053 1.8E-08 75.7 3.6 71 159-235 386-473 (842)
224 1via_A Shikimate kinase; struc 96.8 0.00052 1.8E-08 60.5 2.9 23 68-90 6-28 (175)
225 1q3t_A Cytidylate kinase; nucl 96.8 0.00067 2.3E-08 63.0 3.8 78 161-240 137-217 (236)
226 3ake_A Cytidylate kinase; CMP 96.8 0.00063 2.1E-08 61.1 3.4 23 68-90 4-26 (208)
227 3pih_A Uvrabc system protein A 96.8 9.9E-05 3.4E-09 82.2 -2.3 73 158-236 470-559 (916)
228 1gtv_A TMK, thymidylate kinase 96.8 0.00025 8.6E-09 64.2 0.7 23 68-90 2-24 (214)
229 3trf_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 59.8 3.7 23 68-90 7-29 (185)
230 2c95_A Adenylate kinase 1; tra 96.8 0.00065 2.2E-08 60.4 3.3 23 68-90 11-33 (196)
231 2v54_A DTMP kinase, thymidylat 96.8 0.00083 2.8E-08 60.2 4.0 23 68-90 6-28 (204)
232 1xjc_A MOBB protein homolog; s 96.8 0.00056 1.9E-08 61.3 2.7 34 66-99 4-41 (169)
233 1ex7_A Guanylate kinase; subst 96.8 0.00072 2.5E-08 61.4 3.5 24 69-92 4-27 (186)
234 2bwj_A Adenylate kinase 5; pho 96.8 0.00069 2.4E-08 60.4 3.3 23 68-90 14-36 (199)
235 1ukz_A Uridylate kinase; trans 96.7 0.00079 2.7E-08 60.6 3.6 33 66-99 15-47 (203)
236 2plr_A DTMP kinase, probable t 96.7 0.00084 2.9E-08 60.3 3.7 25 67-91 5-29 (213)
237 1qf9_A UMP/CMP kinase, protein 96.7 0.00085 2.9E-08 59.2 3.5 25 66-90 6-30 (194)
238 3qks_A DNA double-strand break 96.7 0.00078 2.7E-08 61.6 3.3 23 68-90 25-47 (203)
239 1nks_A Adenylate kinase; therm 96.7 0.00083 2.8E-08 59.3 3.3 23 68-90 3-25 (194)
240 2z0h_A DTMP kinase, thymidylat 96.7 0.00086 2.9E-08 59.6 3.4 23 68-90 2-24 (197)
241 3dhx_A Methionine import ATP-b 96.7 0.00042 1.4E-08 57.3 1.1 45 305-349 21-71 (106)
242 2wwf_A Thymidilate kinase, put 96.7 0.00097 3.3E-08 60.1 3.7 23 68-90 12-34 (212)
243 2vli_A Antibiotic resistance p 96.7 0.0006 2.1E-08 60.0 2.2 24 67-90 6-29 (183)
244 3iij_A Coilin-interacting nucl 96.6 0.00089 3E-08 59.1 3.1 23 68-90 13-35 (180)
245 2pbr_A DTMP kinase, thymidylat 96.6 0.00099 3.4E-08 58.9 3.4 32 68-99 2-35 (195)
246 3llm_A ATP-dependent RNA helic 96.6 0.001 3.5E-08 61.7 3.6 124 60-201 73-203 (235)
247 1nn5_A Similar to deoxythymidy 96.6 0.0011 3.8E-08 59.7 3.7 23 68-90 11-33 (215)
248 2dhr_A FTSH; AAA+ protein, hex 96.6 0.00067 2.3E-08 70.8 2.3 47 51-103 54-100 (499)
249 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4E-08 61.9 3.7 26 65-90 28-53 (243)
250 2cdn_A Adenylate kinase; phosp 96.6 0.0011 3.9E-08 59.6 3.5 26 65-90 19-44 (201)
251 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.8E-08 60.2 3.4 23 68-90 2-24 (216)
252 2gj8_A MNME, tRNA modification 96.6 0.0011 3.7E-08 58.2 3.2 23 68-90 6-28 (172)
253 2iyv_A Shikimate kinase, SK; t 96.6 0.00089 3.1E-08 59.2 2.6 23 68-90 4-26 (184)
254 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.6E-08 57.9 2.9 23 68-90 4-26 (173)
255 1ega_A Protein (GTP-binding pr 96.5 0.00081 2.8E-08 65.3 2.3 23 68-90 10-32 (301)
256 2r6f_A Excinuclease ABC subuni 96.5 0.00029 1E-08 78.5 -0.9 72 158-235 510-598 (972)
257 1zd8_A GTP:AMP phosphotransfer 96.5 0.0012 4E-08 60.8 3.3 24 67-90 8-31 (227)
258 3crm_A TRNA delta(2)-isopenten 96.5 0.0022 7.4E-08 63.3 5.3 35 67-102 6-40 (323)
259 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.6E-08 57.0 3.5 23 68-90 2-24 (168)
260 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 59.9 3.4 23 68-90 2-24 (216)
261 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.8E-08 57.1 3.5 23 68-90 9-31 (168)
262 3exa_A TRNA delta(2)-isopenten 96.5 0.0021 7.2E-08 63.2 4.9 34 67-101 4-37 (322)
263 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.1E-08 58.3 2.9 24 67-90 3-26 (184)
264 4ad8_A DNA repair protein RECN 96.5 0.00052 1.8E-08 71.6 0.5 36 51-90 49-84 (517)
265 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0015 5.3E-08 66.1 3.9 38 60-100 19-68 (396)
266 3t34_A Dynamin-related protein 96.4 0.00084 2.9E-08 66.6 1.8 34 50-89 24-57 (360)
267 2ygr_A Uvrabc system protein A 96.4 0.00032 1.1E-08 78.4 -1.4 72 158-235 527-615 (993)
268 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0024 8.2E-08 63.8 5.1 35 68-102 181-227 (364)
269 3cf0_A Transitional endoplasmi 96.4 0.0018 6E-08 62.6 4.0 38 60-101 46-83 (301)
270 2qsw_A Methionine import ATP-b 96.4 0.00085 2.9E-08 54.7 1.3 46 304-349 22-73 (100)
271 1ko7_A HPR kinase/phosphatase; 96.4 0.0046 1.6E-07 60.7 6.7 37 49-89 131-167 (314)
272 1zak_A Adenylate kinase; ATP:A 96.4 0.0014 4.8E-08 60.0 2.7 24 67-90 6-29 (222)
273 3lxx_A GTPase IMAP family memb 96.4 0.002 6.9E-08 59.6 3.8 27 64-90 27-53 (239)
274 1ltq_A Polynucleotide kinase; 96.4 0.0017 5.8E-08 62.2 3.3 24 67-90 3-26 (301)
275 1aky_A Adenylate kinase; ATP:A 96.3 0.0019 6.5E-08 59.0 3.5 24 67-90 5-28 (220)
276 3foz_A TRNA delta(2)-isopenten 96.3 0.0028 9.5E-08 62.2 4.8 35 66-101 10-44 (316)
277 2h92_A Cytidylate kinase; ross 96.3 0.0017 5.8E-08 59.1 2.8 25 66-90 3-27 (219)
278 3auy_A DNA double-strand break 96.3 0.0024 8.1E-08 63.7 3.9 31 54-88 17-47 (371)
279 3a8t_A Adenylate isopentenyltr 96.2 0.0035 1.2E-07 62.2 4.9 34 67-101 41-74 (339)
280 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0026 8.8E-08 60.1 3.7 24 67-90 5-28 (260)
281 1kao_A RAP2A; GTP-binding prot 96.2 0.0033 1.1E-07 53.3 3.8 24 66-89 3-26 (167)
282 2qrr_A Methionine import ATP-b 96.1 0.0012 4.2E-08 53.8 0.9 44 306-349 24-73 (101)
283 1ypw_A Transitional endoplasmi 96.1 0.0027 9.2E-08 70.0 3.9 39 59-101 234-272 (806)
284 2ce2_X GTPase HRAS; signaling 96.1 0.0033 1.1E-07 53.1 3.7 24 67-90 4-27 (166)
285 1lv7_A FTSH; alpha/beta domain 96.1 0.0026 8.9E-08 59.4 3.2 34 68-102 47-80 (257)
286 3ced_A Methionine import ATP-b 96.1 0.0007 2.4E-08 55.1 -0.7 45 305-349 20-70 (98)
287 3k53_A Ferrous iron transport 96.1 0.0028 9.7E-08 60.1 3.5 25 66-90 3-27 (271)
288 1z2a_A RAS-related protein RAB 96.1 0.0036 1.2E-07 53.3 3.8 25 66-90 5-29 (168)
289 3kl4_A SRP54, signal recogniti 96.1 0.002 6.9E-08 66.0 2.5 33 66-98 97-130 (433)
290 2ged_A SR-beta, signal recogni 96.1 0.0032 1.1E-07 55.5 3.5 26 65-90 47-72 (193)
291 1u8z_A RAS-related protein RAL 96.1 0.0038 1.3E-07 53.0 3.8 24 66-89 4-27 (168)
292 3eph_A TRNA isopentenyltransfe 96.1 0.0033 1.1E-07 63.8 3.9 34 67-101 3-36 (409)
293 4dsu_A GTPase KRAS, isoform 2B 96.1 0.004 1.4E-07 54.2 3.9 26 65-90 3-28 (189)
294 3bc1_A RAS-related protein RAB 96.0 0.0045 1.5E-07 54.0 4.2 27 64-90 9-35 (195)
295 1c1y_A RAS-related protein RAP 96.0 0.0041 1.4E-07 52.9 3.8 24 66-89 3-26 (167)
296 2erx_A GTP-binding protein DI- 96.0 0.0041 1.4E-07 53.1 3.8 24 66-89 3-26 (172)
297 1yem_A Hypothetical protein; s 96.0 0.02 6.8E-07 51.5 8.5 115 261-383 18-138 (179)
298 1ky3_A GTP-binding protein YPT 96.0 0.0042 1.4E-07 53.7 3.8 26 65-90 7-32 (182)
299 1ek0_A Protein (GTP-binding pr 96.0 0.0042 1.4E-07 52.9 3.8 25 66-90 3-27 (170)
300 2xb4_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 57.7 3.5 23 68-90 2-24 (223)
301 1z0j_A RAB-22, RAS-related pro 96.0 0.0045 1.5E-07 52.8 3.8 25 66-90 6-30 (170)
302 2fn4_A P23, RAS-related protei 96.0 0.0043 1.5E-07 53.5 3.7 26 64-89 7-32 (181)
303 1z08_A RAS-related protein RAB 96.0 0.0046 1.6E-07 52.9 3.8 26 65-90 5-30 (170)
304 2lkc_A Translation initiation 96.0 0.0039 1.3E-07 53.8 3.4 25 66-90 8-32 (178)
305 1e4v_A Adenylate kinase; trans 96.0 0.0036 1.2E-07 57.0 3.3 23 68-90 2-24 (214)
306 2nzj_A GTP-binding protein REM 96.0 0.0043 1.5E-07 53.3 3.6 25 66-90 4-28 (175)
307 2z43_A DNA repair and recombin 95.9 0.0067 2.3E-07 59.2 5.3 40 59-101 103-150 (324)
308 2ocp_A DGK, deoxyguanosine kin 95.9 0.0042 1.4E-07 57.7 3.6 27 66-92 2-28 (241)
309 1g16_A RAS-related protein SEC 95.9 0.0048 1.6E-07 52.6 3.7 25 66-90 3-27 (170)
310 1wms_A RAB-9, RAB9, RAS-relate 95.9 0.0051 1.7E-07 53.1 3.8 26 65-90 6-31 (177)
311 3con_A GTPase NRAS; structural 95.9 0.0052 1.8E-07 53.9 3.9 28 63-90 18-45 (190)
312 1r2q_A RAS-related protein RAB 95.9 0.0053 1.8E-07 52.2 3.8 24 66-89 6-29 (170)
313 3q85_A GTP-binding protein REM 95.8 0.0051 1.7E-07 52.6 3.6 25 66-90 2-26 (169)
314 1upt_A ARL1, ADP-ribosylation 95.8 0.0053 1.8E-07 52.5 3.7 24 66-89 7-30 (171)
315 2wsm_A Hydrogenase expression/ 95.8 0.0049 1.7E-07 55.8 3.6 25 66-90 30-54 (221)
316 3clv_A RAB5 protein, putative; 95.8 0.0052 1.8E-07 53.8 3.7 26 65-90 6-31 (208)
317 2dyk_A GTP-binding protein; GT 95.8 0.0055 1.9E-07 51.9 3.7 23 68-90 3-25 (161)
318 3tqf_A HPR(Ser) kinase; transf 95.8 0.0059 2E-07 55.1 3.9 35 51-89 5-39 (181)
319 1svi_A GTP-binding protein YSX 95.8 0.0043 1.5E-07 54.6 3.0 25 65-89 22-46 (195)
320 3tw8_B RAS-related protein RAB 95.8 0.0045 1.5E-07 53.4 3.1 25 65-89 8-32 (181)
321 3umf_A Adenylate kinase; rossm 95.8 0.0052 1.8E-07 57.0 3.7 27 64-90 27-53 (217)
322 2ius_A DNA translocase FTSK; n 95.8 0.0041 1.4E-07 65.0 3.3 31 55-88 159-189 (512)
323 3be4_A Adenylate kinase; malar 95.8 0.0048 1.7E-07 56.4 3.4 24 67-90 6-29 (217)
324 3q72_A GTP-binding protein RAD 95.8 0.0038 1.3E-07 53.3 2.6 24 67-90 3-26 (166)
325 2oil_A CATX-8, RAS-related pro 95.8 0.0067 2.3E-07 53.5 4.2 27 64-90 23-49 (193)
326 2hxs_A RAB-26, RAS-related pro 95.8 0.0064 2.2E-07 52.5 3.9 25 65-89 5-29 (178)
327 2y8e_A RAB-protein 6, GH09086P 95.7 0.0061 2.1E-07 52.4 3.6 24 66-89 14-37 (179)
328 1ak2_A Adenylate kinase isoenz 95.7 0.0054 1.8E-07 56.7 3.5 24 67-90 17-40 (233)
329 1v5w_A DMC1, meiotic recombina 95.7 0.008 2.7E-07 59.3 4.9 40 59-101 118-165 (343)
330 2gf0_A GTP-binding protein DI- 95.7 0.0066 2.3E-07 53.5 3.9 25 65-89 7-31 (199)
331 2a9k_A RAS-related protein RAL 95.7 0.0068 2.3E-07 52.5 3.8 24 66-89 18-41 (187)
332 2g6b_A RAS-related protein RAB 95.7 0.0068 2.3E-07 52.4 3.8 27 64-90 8-34 (180)
333 3lxw_A GTPase IMAP family memb 95.7 0.0062 2.1E-07 57.1 3.7 27 64-90 19-45 (247)
334 3pqc_A Probable GTP-binding pr 95.7 0.0052 1.8E-07 53.8 2.9 25 66-90 23-47 (195)
335 1fzq_A ADP-ribosylation factor 95.6 0.0051 1.7E-07 54.1 2.8 26 65-90 15-40 (181)
336 1z0f_A RAB14, member RAS oncog 95.6 0.0075 2.6E-07 51.8 3.8 27 64-90 13-39 (179)
337 3zvl_A Bifunctional polynucleo 95.6 0.0054 1.8E-07 62.2 3.2 25 66-90 258-282 (416)
338 2xtp_A GTPase IMAP family memb 95.6 0.0065 2.2E-07 56.8 3.5 26 64-89 20-45 (260)
339 4ag6_A VIRB4 ATPase, type IV s 95.6 0.0051 1.7E-07 61.5 2.9 29 68-96 37-66 (392)
340 1moz_A ARL1, ADP-ribosylation 95.6 0.004 1.4E-07 54.2 1.8 25 64-88 16-40 (183)
341 2bme_A RAB4A, RAS-related prot 95.6 0.0075 2.6E-07 52.5 3.6 26 65-90 9-34 (186)
342 2efe_B Small GTP-binding prote 95.6 0.0081 2.8E-07 51.9 3.8 26 65-90 11-36 (181)
343 2bov_A RAla, RAS-related prote 95.6 0.0078 2.7E-07 53.3 3.8 25 65-89 13-37 (206)
344 3bos_A Putative DNA replicatio 95.6 0.0078 2.7E-07 54.5 3.8 23 68-90 54-76 (242)
345 1nrj_B SR-beta, signal recogni 95.6 0.0072 2.5E-07 54.4 3.5 26 65-90 11-36 (218)
346 1jal_A YCHF protein; nucleotid 95.5 0.0087 3E-07 59.9 4.4 22 68-89 4-25 (363)
347 1p5z_B DCK, deoxycytidine kina 95.5 0.0047 1.6E-07 58.2 2.3 27 66-92 24-50 (263)
348 3t5g_A GTP-binding protein RHE 95.5 0.008 2.7E-07 52.2 3.6 25 65-89 5-29 (181)
349 3ihw_A Centg3; RAS, centaurin, 95.5 0.0085 2.9E-07 52.9 3.8 25 65-89 19-43 (184)
350 3kkq_A RAS-related protein M-R 95.5 0.0087 3E-07 52.0 3.8 27 64-90 16-42 (183)
351 1vg8_A RAS-related protein RAB 95.5 0.0087 3E-07 53.2 3.8 26 65-90 7-32 (207)
352 2w58_A DNAI, primosome compone 95.5 0.0074 2.5E-07 54.0 3.4 23 68-90 56-78 (202)
353 1mh1_A RAC1; GTP-binding, GTPa 95.5 0.0089 3E-07 51.8 3.8 24 66-89 5-28 (186)
354 1f2t_B RAD50 ABC-ATPase; DNA d 95.5 0.0013 4.5E-08 57.4 -1.6 59 158-222 63-136 (148)
355 2gf9_A RAS-related protein RAB 95.5 0.0097 3.3E-07 52.3 4.0 27 64-90 20-46 (189)
356 1z06_A RAS-related protein RAB 95.5 0.0091 3.1E-07 52.5 3.8 26 65-90 19-44 (189)
357 2fg5_A RAB-22B, RAS-related pr 95.5 0.0086 2.9E-07 53.0 3.7 26 65-90 22-47 (192)
358 3b1v_A Ferrous iron uptake tra 95.5 0.0075 2.6E-07 57.7 3.5 24 66-89 3-26 (272)
359 1jbk_A CLPB protein; beta barr 95.5 0.0091 3.1E-07 51.6 3.8 23 68-90 45-67 (195)
360 3tkl_A RAS-related protein RAB 95.5 0.0091 3.1E-07 52.4 3.8 27 64-90 14-40 (196)
361 2qmh_A HPR kinase/phosphorylas 95.5 0.0091 3.1E-07 55.0 3.8 35 52-90 24-58 (205)
362 3t1o_A Gliding protein MGLA; G 95.5 0.0094 3.2E-07 52.1 3.8 27 64-90 12-38 (198)
363 4fcw_A Chaperone protein CLPB; 95.5 0.006 2.1E-07 58.2 2.7 26 68-93 49-75 (311)
364 1ksh_A ARF-like protein 2; sma 95.4 0.0079 2.7E-07 52.5 3.3 25 65-89 17-41 (186)
365 2qby_A CDC6 homolog 1, cell di 95.4 0.0063 2.2E-07 59.3 2.9 33 68-100 47-84 (386)
366 2hf9_A Probable hydrogenase ni 95.4 0.0083 2.9E-07 54.4 3.5 25 66-90 38-62 (226)
367 1r8s_A ADP-ribosylation factor 95.4 0.008 2.7E-07 51.1 3.2 22 68-89 2-23 (164)
368 3oes_A GTPase rhebl1; small GT 95.4 0.0092 3.1E-07 53.2 3.7 25 66-90 24-48 (201)
369 2a5j_A RAS-related protein RAB 95.4 0.011 3.8E-07 52.1 4.1 27 64-90 19-45 (191)
370 2cxx_A Probable GTP-binding pr 95.4 0.0072 2.5E-07 52.7 2.8 23 68-90 3-25 (190)
371 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0097 3.3E-07 52.2 3.7 25 66-90 7-31 (184)
372 3reg_A RHO-like small GTPase; 95.4 0.011 3.6E-07 52.3 3.9 29 62-90 19-47 (194)
373 2qag_A Septin-2, protein NEDD5 95.4 0.0063 2.2E-07 60.6 2.6 23 68-90 39-61 (361)
374 1m8p_A Sulfate adenylyltransfe 95.3 0.0056 1.9E-07 64.9 2.3 41 62-102 392-435 (573)
375 3b9p_A CG5977-PA, isoform A; A 95.3 0.0098 3.3E-07 56.6 3.8 23 68-90 56-78 (297)
376 1x3s_A RAS-related protein RAB 95.3 0.011 3.7E-07 51.8 3.8 25 66-90 15-39 (195)
377 2r6a_A DNAB helicase, replicat 95.3 0.0048 1.7E-07 63.2 1.7 38 50-90 190-227 (454)
378 2dy1_A Elongation factor G; tr 95.3 0.0063 2.1E-07 65.6 2.6 36 58-96 4-42 (665)
379 2e87_A Hypothetical protein PH 95.3 0.0068 2.3E-07 60.0 2.7 25 66-90 167-191 (357)
380 1zj6_A ADP-ribosylation factor 95.3 0.01 3.5E-07 52.1 3.5 25 65-89 15-39 (187)
381 3cbq_A GTP-binding protein REM 95.3 0.0072 2.5E-07 54.0 2.5 26 64-89 21-46 (195)
382 1zd9_A ADP-ribosylation factor 95.3 0.011 3.9E-07 52.0 3.8 25 66-90 22-46 (188)
383 3i8s_A Ferrous iron transport 95.3 0.0097 3.3E-07 56.7 3.5 25 66-90 3-27 (274)
384 4dhe_A Probable GTP-binding pr 95.3 0.0051 1.7E-07 55.6 1.4 24 66-89 29-52 (223)
385 3sr0_A Adenylate kinase; phosp 95.3 0.01 3.4E-07 54.5 3.4 23 68-90 2-24 (206)
386 3bwd_D RAC-like GTP-binding pr 95.2 0.011 3.6E-07 51.2 3.4 25 66-90 8-32 (182)
387 1fnn_A CDC6P, cell division co 95.2 0.011 3.7E-07 57.9 3.8 32 68-99 46-80 (389)
388 2h17_A ADP-ribosylation factor 95.2 0.0095 3.2E-07 52.1 3.0 25 65-89 20-44 (181)
389 2p5s_A RAS and EF-hand domain 95.2 0.012 4E-07 52.4 3.6 27 64-90 26-52 (199)
390 2atv_A RERG, RAS-like estrogen 95.2 0.012 4.3E-07 52.0 3.7 25 65-89 27-51 (196)
391 2ew1_A RAS-related protein RAB 95.2 0.012 4.1E-07 53.0 3.6 26 65-90 25-50 (201)
392 3p32_A Probable GTPase RV1496/ 95.2 0.015 5.2E-07 57.5 4.7 35 65-99 78-116 (355)
393 3iev_A GTP-binding protein ERA 95.2 0.011 3.9E-07 57.2 3.7 24 66-89 10-33 (308)
394 2qu8_A Putative nucleolar GTP- 95.2 0.01 3.6E-07 54.2 3.2 27 64-90 27-53 (228)
395 2bcg_Y Protein YP2, GTP-bindin 95.2 0.012 4.2E-07 52.4 3.6 26 65-90 7-32 (206)
396 1zbd_A Rabphilin-3A; G protein 95.2 0.013 4.3E-07 52.1 3.7 25 66-90 8-32 (203)
397 2o52_A RAS-related protein RAB 95.2 0.011 3.9E-07 52.7 3.4 25 65-89 24-48 (200)
398 3t5d_A Septin-7; GTP-binding p 95.1 0.0095 3.2E-07 56.5 3.0 24 66-89 8-31 (274)
399 2h57_A ADP-ribosylation factor 95.1 0.0081 2.8E-07 52.9 2.4 25 65-89 20-44 (190)
400 1wf3_A GTP-binding protein; GT 95.1 0.012 4E-07 57.1 3.7 22 68-89 9-30 (301)
401 1h65_A Chloroplast outer envel 95.1 0.012 4.1E-07 55.6 3.7 29 62-90 35-63 (270)
402 3def_A T7I23.11 protein; chlor 95.1 0.012 4.1E-07 55.4 3.6 27 64-90 34-60 (262)
403 4bas_A ADP-ribosylation factor 95.1 0.011 3.7E-07 52.0 3.2 28 63-90 14-41 (199)
404 2il1_A RAB12; G-protein, GDP, 95.1 0.012 4.1E-07 52.1 3.4 26 64-89 24-49 (192)
405 3a1s_A Iron(II) transport prot 95.1 0.013 4.3E-07 55.5 3.7 25 66-90 5-29 (258)
406 2iwr_A Centaurin gamma 1; ANK 95.1 0.011 3.7E-07 51.2 3.0 24 66-89 7-30 (178)
407 3cph_A RAS-related protein SEC 95.1 0.013 4.5E-07 52.2 3.7 24 66-89 20-43 (213)
408 3c5c_A RAS-like protein 12; GD 95.1 0.015 5E-07 51.4 3.8 26 64-89 19-44 (187)
409 2fh5_B SR-beta, signal recogni 95.1 0.012 4.2E-07 52.7 3.4 25 66-90 7-31 (214)
410 3dz8_A RAS-related protein RAB 95.1 0.013 4.5E-07 51.6 3.5 25 66-90 23-47 (191)
411 1njg_A DNA polymerase III subu 95.1 0.012 4.2E-07 52.6 3.3 31 60-90 39-69 (250)
412 2j1l_A RHO-related GTP-binding 95.0 0.013 4.5E-07 52.9 3.5 25 65-89 33-57 (214)
413 2fv8_A H6, RHO-related GTP-bin 95.0 0.014 4.8E-07 52.3 3.7 25 66-90 25-49 (207)
414 3h4m_A Proteasome-activating n 95.0 0.013 4.5E-07 55.2 3.6 23 68-90 53-75 (285)
415 2p65_A Hypothetical protein PF 95.0 0.011 3.9E-07 51.1 3.0 23 68-90 45-67 (187)
416 3lv8_A DTMP kinase, thymidylat 95.0 0.014 4.8E-07 54.8 3.7 26 62-90 26-51 (236)
417 3fdi_A Uncharacterized protein 95.0 0.013 4.4E-07 53.4 3.3 24 67-90 7-30 (201)
418 4edh_A DTMP kinase, thymidylat 94.9 0.014 4.9E-07 53.7 3.5 23 68-90 8-30 (213)
419 2q3h_A RAS homolog gene family 94.9 0.015 5.1E-07 51.5 3.4 24 66-89 20-43 (201)
420 2f7s_A C25KG, RAS-related prot 94.9 0.016 5.4E-07 52.1 3.6 27 64-90 23-49 (217)
421 3tmk_A Thymidylate kinase; pho 94.9 0.018 6.3E-07 53.3 4.1 31 62-95 4-34 (216)
422 1gwn_A RHO-related GTP-binding 94.9 0.016 5.6E-07 52.2 3.7 26 65-90 27-52 (205)
423 1jwy_B Dynamin A GTPase domain 94.9 0.013 4.6E-07 56.1 3.2 24 67-90 25-48 (315)
424 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.017 5.7E-07 53.5 3.7 23 68-90 41-63 (262)
425 2atx_A Small GTP binding prote 94.8 0.018 6E-07 50.7 3.7 24 66-89 18-41 (194)
426 2b6h_A ADP-ribosylation factor 94.8 0.013 4.5E-07 52.0 2.8 25 65-89 28-52 (192)
427 2cjw_A GTP-binding protein GEM 94.8 0.018 6.3E-07 51.2 3.8 24 66-89 6-29 (192)
428 2dby_A GTP-binding protein; GD 94.8 0.014 4.6E-07 58.5 3.2 22 68-89 3-24 (368)
429 2fu5_C RAS-related protein RAB 94.8 0.011 3.7E-07 51.4 2.2 24 66-89 8-31 (183)
430 2gco_A H9, RHO-related GTP-bin 94.8 0.018 6.1E-07 51.3 3.6 25 66-90 25-49 (201)
431 3llu_A RAS-related GTP-binding 94.8 0.015 5.1E-07 51.6 3.1 29 62-90 16-44 (196)
432 2o5v_A DNA replication and rep 94.8 0.0028 9.7E-08 63.3 -1.9 35 50-88 14-48 (359)
433 3iby_A Ferrous iron transport 94.8 0.015 5.1E-07 55.0 3.2 22 68-89 3-24 (256)
434 2zts_A Putative uncharacterize 94.7 0.021 7E-07 52.3 4.1 25 60-87 27-51 (251)
435 1x6v_B Bifunctional 3'-phospho 94.7 0.019 6.4E-07 61.4 4.2 39 65-103 51-91 (630)
436 4gzl_A RAS-related C3 botulinu 94.7 0.018 6.2E-07 51.6 3.5 25 65-89 29-53 (204)
437 3v9p_A DTMP kinase, thymidylat 94.7 0.014 4.9E-07 54.4 2.8 27 61-90 23-49 (227)
438 3n70_A Transport activator; si 94.7 0.018 6.1E-07 49.2 3.2 23 68-90 26-48 (145)
439 3ld9_A DTMP kinase, thymidylat 94.6 0.019 6.4E-07 53.5 3.5 24 67-90 22-45 (223)
440 1u94_A RECA protein, recombina 94.6 0.023 7.9E-07 56.5 4.4 38 60-100 60-99 (356)
441 4tmk_A Protein (thymidylate ki 94.6 0.02 6.9E-07 52.8 3.7 23 68-90 5-27 (213)
442 1c9k_A COBU, adenosylcobinamid 94.6 0.015 5.1E-07 52.5 2.7 22 68-89 1-22 (180)
443 3dm5_A SRP54, signal recogniti 94.6 0.015 5.1E-07 59.7 3.0 26 65-90 99-124 (443)
444 3t15_A Ribulose bisphosphate c 94.6 0.017 5.9E-07 55.5 3.3 25 66-90 36-60 (293)
445 2hup_A RAS-related protein RAB 94.6 0.021 7.2E-07 51.0 3.7 27 64-90 27-53 (201)
446 1l8q_A Chromosomal replication 94.6 0.017 5.7E-07 55.9 3.1 23 68-90 39-61 (324)
447 1sxj_D Activator 1 41 kDa subu 94.6 0.0051 1.8E-07 59.6 -0.6 42 48-90 41-82 (353)
448 2i1q_A DNA repair and recombin 94.5 0.02 6.8E-07 55.5 3.6 28 59-89 94-121 (322)
449 3gmt_A Adenylate kinase; ssgci 94.5 0.019 6.4E-07 53.8 3.2 23 68-90 10-32 (230)
450 2aka_B Dynamin-1; fusion prote 94.5 0.017 5.9E-07 54.7 3.0 25 66-90 26-50 (299)
451 2yc2_C IFT27, small RAB-relate 94.5 0.0098 3.3E-07 52.6 1.1 24 66-89 20-43 (208)
452 2x77_A ADP-ribosylation factor 94.4 0.013 4.4E-07 51.4 1.8 24 65-88 21-44 (189)
453 3ghx_A Adenylate cyclase CYAB; 94.4 0.037 1.3E-06 49.7 4.8 98 279-383 40-141 (179)
454 4ad8_A DNA repair protein RECN 94.4 0.0061 2.1E-07 63.5 -0.5 60 159-225 404-474 (517)
455 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.036 1.2E-06 54.0 5.0 34 68-101 47-80 (322)
456 4djt_A GTP-binding nuclear pro 94.4 0.011 3.6E-07 53.3 1.1 26 64-89 9-34 (218)
457 2j0v_A RAC-like GTP-binding pr 94.3 0.026 9E-07 50.4 3.7 25 66-90 9-33 (212)
458 3cpj_B GTP-binding protein YPT 94.3 0.027 9.4E-07 51.0 3.8 26 65-90 12-37 (223)
459 3bh0_A DNAB-like replicative h 94.3 0.025 8.7E-07 55.0 3.7 37 51-90 56-92 (315)
460 2chg_A Replication factor C sm 94.3 0.023 8E-07 50.2 3.2 23 68-90 40-62 (226)
461 2ce7_A Cell division protein F 94.2 0.022 7.4E-07 59.0 3.2 22 69-90 52-73 (476)
462 1d2n_A N-ethylmaleimide-sensit 94.2 0.029 1E-06 52.7 3.8 25 66-90 64-88 (272)
463 2r62_A Cell division protease 94.2 0.012 4.2E-07 55.0 1.1 23 68-90 46-68 (268)
464 3syl_A Protein CBBX; photosynt 94.1 0.029 9.9E-07 53.4 3.6 23 68-90 69-91 (309)
465 3q3j_B RHO-related GTP-binding 94.1 0.031 1.1E-06 50.5 3.7 24 66-89 27-50 (214)
466 1ypw_A Transitional endoplasmi 94.1 0.0076 2.6E-07 66.4 -0.7 40 57-100 505-544 (806)
467 1g8f_A Sulfate adenylyltransfe 94.1 0.019 6.6E-07 59.9 2.4 25 67-91 396-420 (511)
468 1knx_A Probable HPR(Ser) kinas 94.0 0.038 1.3E-06 54.1 4.3 37 48-88 133-169 (312)
469 2z4s_A Chromosomal replication 94.0 0.025 8.5E-07 57.7 3.1 23 68-90 132-154 (440)
470 1yrb_A ATP(GTP)binding protein 94.0 0.036 1.2E-06 51.4 3.9 29 62-90 10-38 (262)
471 3hdt_A Putative kinase; struct 93.9 0.034 1.2E-06 51.7 3.6 24 67-90 15-38 (223)
472 2een_A Hypothetical protein PH 93.9 0.068 2.3E-06 47.7 5.5 101 279-382 29-139 (183)
473 2g3y_A GTP-binding protein GEM 93.9 0.035 1.2E-06 50.8 3.6 24 66-89 37-60 (211)
474 3hws_A ATP-dependent CLP prote 93.9 0.028 9.7E-07 55.3 3.2 23 68-90 53-75 (363)
475 2v3c_C SRP54, signal recogniti 93.9 0.019 6.3E-07 58.8 1.8 25 66-90 99-123 (432)
476 4dcu_A GTP-binding protein ENG 93.8 0.023 8E-07 58.0 2.5 22 68-89 25-46 (456)
477 1bif_A 6-phosphofructo-2-kinas 93.8 0.035 1.2E-06 57.0 3.7 25 66-90 39-63 (469)
478 3cnl_A YLQF, putative uncharac 93.8 0.031 1.1E-06 53.0 3.2 23 68-90 101-123 (262)
479 2axn_A 6-phosphofructo-2-kinas 93.8 0.034 1.2E-06 58.1 3.7 25 66-90 35-59 (520)
480 1puj_A YLQF, conserved hypothe 93.7 0.036 1.2E-06 53.2 3.5 26 65-90 119-144 (282)
481 3gj0_A GTP-binding nuclear pro 93.7 0.029 1E-06 50.6 2.7 25 65-89 14-39 (221)
482 2v1u_A Cell division control p 93.7 0.03 1E-06 54.6 2.9 23 68-90 46-68 (387)
483 1sky_E F1-ATPase, F1-ATP synth 93.5 0.044 1.5E-06 56.6 3.8 35 52-90 141-175 (473)
484 2gks_A Bifunctional SAT/APS ki 93.5 0.039 1.3E-06 58.0 3.6 25 66-90 372-396 (546)
485 1ofh_A ATP-dependent HSL prote 93.5 0.039 1.3E-06 52.1 3.2 23 68-90 52-74 (310)
486 3th5_A RAS-related C3 botulinu 92.5 0.014 4.8E-07 52.0 0.0 24 66-89 30-53 (204)
487 2qby_B CDC6 homolog 3, cell di 93.4 0.046 1.6E-06 53.5 3.7 25 66-90 45-69 (384)
488 1tue_A Replication protein E1; 93.3 0.038 1.3E-06 51.1 2.8 28 60-90 55-82 (212)
489 4hlc_A DTMP kinase, thymidylat 93.2 0.04 1.4E-06 50.4 2.7 23 68-90 4-26 (205)
490 2bjv_A PSP operon transcriptio 93.2 0.067 2.3E-06 49.9 4.3 24 68-91 31-54 (265)
491 3uk6_A RUVB-like 2; hexameric 93.2 0.053 1.8E-06 52.9 3.7 32 68-99 72-104 (368)
492 4b4t_K 26S protease regulatory 93.1 0.052 1.8E-06 55.4 3.7 33 68-101 208-240 (428)
493 2j37_W Signal recognition part 93.1 0.048 1.7E-06 56.8 3.5 37 64-100 99-139 (504)
494 4a1f_A DNAB helicase, replicat 93.1 0.054 1.9E-06 53.5 3.7 35 53-90 36-70 (338)
495 1um8_A ATP-dependent CLP prote 93.1 0.047 1.6E-06 54.0 3.2 23 68-90 74-96 (376)
496 3eie_A Vacuolar protein sortin 93.1 0.046 1.6E-06 52.9 3.1 23 68-90 53-75 (322)
497 3d8b_A Fidgetin-like protein 1 93.1 0.049 1.7E-06 53.7 3.3 24 67-90 118-141 (357)
498 2zan_A Vacuolar protein sortin 93.1 0.074 2.5E-06 54.2 4.7 34 68-101 169-202 (444)
499 2q6t_A DNAB replication FORK h 93.0 0.054 1.8E-06 55.2 3.6 36 52-90 189-224 (444)
500 1g41_A Heat shock protein HSLU 93.0 0.063 2.2E-06 55.0 4.1 32 68-100 52-83 (444)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3e-36 Score=303.88 Aligned_cols=266 Identities=17% Similarity=0.235 Sum_probs=198.6
Q ss_pred eeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------C
Q 014617 41 DTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------S 105 (421)
Q Consensus 41 ~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~ 105 (421)
+++++.|+ ...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.++. +
T Consensus 28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r 104 (366)
T 3tui_C 28 SNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 104 (366)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHH
T ss_pred EeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 44555553 3679999999999999 99999999999999999999999 99999999999764 3
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccc---------cccccccCceEEEeehhhhhhhc
Q 014617 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
+.+||+||++.+++..|+.+|+.+.......... .......+..+ .+......|||.||+|+ .
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL-----~ 179 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL-----A 179 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT-----T
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----h
Confidence 5699999999999999999999875421111000 00000001111 01111234999999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCC
Q 014617 174 LRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p 243 (421)
.+|.++++||||++||+...+++ +++++++ |.|+ ++++.++||+|++|++|++...+...++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev-------- 251 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV-------- 251 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH--------
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH--------
Confidence 99999999999999999977655 4777655 9998 8999999999999999999999988877
Q ss_pred cccccCCeeeccCCCcchHHHHHHHhcccccccccccceeecCCCCCCchhhhhhhhc---ccCCceEEEEEeeecCCCC
Q 014617 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM---RNRDGKYNLMFEEWVTDSP 320 (421)
Q Consensus 244 ~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~p 320 (421)
+.+| ..+.+..++.+..... .| ......++. ......+++.|.|..+..|
T Consensus 252 ---~~~p------~~~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 304 (366)
T 3tui_C 252 ---FSHP------KTPLAQKFIQSTLHLD-------------IP-----EDYQERLQAEPFTDCVPMLRLEFTGQSVDAP 304 (366)
T ss_dssp ---HSSC------CSHHHHHHHHHHTTCC-------------CC-----HHHHHHCBSSCCTTCCEEEEEEEEHHHHSSC
T ss_pred ---HhCC------CcHHHHHHHhhccccc-------------Cc-----hhhhhhhccccccCCCceEEEEecCcccchh
Confidence 4556 6677777776654321 01 000000111 1124679999999999999
Q ss_pred eEeeeeeeeceeeeEeccc------ccccceeeee
Q 014617 321 FIISPRITFEVSVRLLGGL------MALGYTIATI 349 (421)
Q Consensus 321 ~i~~~~~~f~v~~~il~g~------~~~g~~~~~~ 349 (421)
++++..++|+|++|||+|. .++|+.++..
T Consensus 305 ~~~~~~~~~~~~~~il~g~~~~~~~~~~g~~~~~~ 339 (366)
T 3tui_C 305 LLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEM 339 (366)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEESSSCEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEeeEEEECCEEEEEEEEEE
Confidence 9999999999999999998 5566665543
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=3.9e-30 Score=260.66 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=149.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.||...+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5778888999999999999999999 99999999999999999999999 99999999999764 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccccc-----cccc----cccc---cccccccccccCceEEEeehhhhhhhccCCccceE
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAVQV-----PIYD----FKSS---SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~-----p~~~----~~~~---~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++.+|+.+|+.+......... .... .... .+...+......|||.||+++ ..+|.++++
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL-----~~~P~lLLL 157 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL-----VAEPSVFLL 157 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHH-----HHCCSEEEE
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 9999999999999988543111100 0000 0000 000001111234999999999 999999999
Q ss_pred EEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....++ +++++++ |.|+ ++.+..+||++++|++|++...+...++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 999999999876554 4666555 9888 7888999999999999999988887776
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=8.8e-30 Score=256.36 Aligned_cols=189 Identities=16% Similarity=0.076 Sum_probs=148.9
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec----C-----CCcc
Q 014617 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-----SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~----~-----~~~i 108 (421)
-.+++++.||...+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+. . ++.+
T Consensus 6 ~i~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 35678888898999999999999999 99999999999999999999999 9999999999865 1 3569
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc-----cccc----ccccc---ccccccccccCceEEEeehhhhhhhccCC
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV-----PIYD----FKSSS---RIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~-----p~~~----~~~~~---~~~~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
||+||++.+++.+|+.+|+.+......... .... +.... +...+......|||.||+++ ..+|
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL-----~~~P 157 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL-----APDP 157 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCC
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCC
Confidence 999999999999999999998643211100 0000 00000 00001111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHH-HHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 177 LIDLRVSVTGGVHFDLVKRVF---RDI-QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl-~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++|||+++||+....+++ +++ ++.|.|+ ++.+..+||++++|++|++...+...++
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999876654 344 3458888 7888999999999999999988887776
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=3.5e-29 Score=242.08 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=145.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------- 104 (421)
.+++++.||...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+..
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EeeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 5677788888889999999999999 99999999999999999999999 89999999998753
Q ss_pred ------CCccccccCCCCCCccchHHHHHHhhh-cccccc-----ccc------ccccc--ccccccccccccCceEEEe
Q 014617 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK-EGKAVQ-----VPI------YDFKS--SSRIGYRTLEVPSSRIVII 164 (421)
Q Consensus 105 ------~~~ig~vfq~p~l~~~~tv~enl~~l~-~~~~i~-----~p~------~~~~~--~~~~~~~~~~~~~qrVlIa 164 (421)
++.++|+||++.+++..|+.+|+.+.. ...... ... ..... ..+...+......||+.||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 235899999999999999999998732 110000 000 00000 0000001111234999999
Q ss_pred ehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 165 egl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++ ..+|.++++||||++||+.....+ +++++++|.|+ ++.+..+||++++|++|++...+...++
T Consensus 166 raL-----~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 166 RAL-----AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHH-----HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 999999999999999999876654 46666668888 7888899999999999999877766555
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=6.4e-29 Score=236.51 Aligned_cols=187 Identities=16% Similarity=0.176 Sum_probs=140.5
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014617 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+ ...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 456777775 2579999999999999 99999999999999999999999 99999999998753
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccc---ccc-----ccc------cccccc--cccccccccccCceEEEeehh
Q 014617 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQ-----VPI------YDFKSS--SRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~-----~p~------~~~~~~--~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++..|+.+|+.+..... ... ... ...... .+...+......||+.||+++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 124899999999999999999998743211 000 000 000000 000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+....+++ ++++++ |.|+ ++++ ++||++++|++|++...++..++
T Consensus 161 -----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 -----ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp -----TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999776554 666554 8888 6654 79999999999999887665554
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=6.2e-29 Score=240.61 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=145.8
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCcc
Q 014617 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~i 108 (421)
-.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.+
T Consensus 26 ~i~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 26 DVHQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 35678888888889999999999999 99999999999999999999999 99999999998763 2358
Q ss_pred ccccCCCCCCccchHHHHHHhhh-cccccc-----cccc----ccccccccc---cccccccCceEEEeehhhhhhhccC
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLK-EGKAVQ-----VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~-~~~~i~-----~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||++.+++..|+.+|+.+.. ...... .... .+....... .+......||+.||+++ ..+
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL-----~~~ 177 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL-----AME 177 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTC
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH-----HCC
Confidence 99999999999999999998742 110000 0000 000000000 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++||||++||+...+.+ +++++++|.|+ ++.+.++||++++|++|++...+...++
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999876654 46666668887 7888999999999999999876665554
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=9.8e-29 Score=239.53 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=145.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Cccccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~v 111 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+... +.++++
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 4577888888999999999999999 99999999999999999999999 999999999997642 358999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc---ccc----cccccccccc---cccccccCceEEEeehhhhhh-hccCCccce
Q 014617 112 FDDPRLTDYDTLLENIRGLKEGKAVQ---VPI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALS-EKLRPLIDL 180 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~---~p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL 180 (421)
+|++.++...|+.+|+.+........ ... ..+....... .+......||+.||+++..++ ...+|.+++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 99999888899999998754311100 000 0000000000 011112349999999992221 112999999
Q ss_pred EEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 181 RVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+||||++||+....++ +++++++ |.|+ ++.+.++||++++|++|++...+...++
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999876655 4666665 5677 7888999999999999999888776665
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.2e-28 Score=235.33 Aligned_cols=188 Identities=16% Similarity=0.127 Sum_probs=144.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 5678888888889999999999999 99999999999999999999999 99999999998763 234899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-ccc---cccccc-----cccccccc---ccccccCceEEEeehhhhhhhccCCcc
Q 014617 111 NFDDPRLTDYDTLLENIRGLKEGK-AVQ---VPIYDF-----KSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-~i~---~p~~~~-----~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
+||++.+++..|+.+|+.+..... ... ...... ........ +......||+.||+++ ..+|.+
T Consensus 86 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~l 160 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL-----MSRPKL 160 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH-----TTCCSE
T ss_pred EecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCE
Confidence 999999999999999998753111 000 000000 00000010 1111234999999999 999999
Q ss_pred ceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 179 DLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++||||++||+...+.++ ++++++|.|+ ++.+.++||++++|++|++...+...++
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999766554 6666568888 7778899999999999998765544443
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=1.6e-28 Score=247.44 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=147.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.||.+.+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5678888888899999999999999 99999999999999999999999 99999999998753 357999999
Q ss_pred CCCCCccchHHHHHHhhhccccc-----cccccc----cccccccc---cccccccCceEEEeehhhhhhhccCCccceE
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAV-----QVPIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++.+|+.+|+.+....... ...... +....... .+......|||.||+++ ..+|.++++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL-----~~~P~lLLL 157 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL-----VKQPKVLLF 157 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 99999999999999985421110 000000 00000000 01111234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999766554 566544 8887 7778899999999999999887776665
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=2e-28 Score=231.42 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=139.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-----------Cc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI 107 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-----------~~ 107 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+... +.
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 5678888888889999999999999 99999999999999999999999 999999999987531 35
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-----cccc----ccccccccc---cccccccCceEEEeehhhhhhhccC
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|+||++.+++..|+.+|+.+........ .... .+....... .+......||+.||+++ ..+
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral-----~~~ 158 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL-----ANE 158 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT-----TTC
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 899999999999999999998743211000 0000 000000000 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014617 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
|.++++||||++||+.....+. ++++++|.|+ ++.+ ++||++++|++|++...+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 9999999999999999766554 6666568887 5666 799999999999987654
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=3.9e-29 Score=243.54 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=143.1
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCcc
Q 014617 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~i 108 (421)
.+++++.|+. ..+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.+
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4567777753 569999999999999 99999999999999999999999 99999999999762 2468
Q ss_pred ccccCCCC-CCccchHHHHHHhhhccccccc-----cc----cccccccccc---cccccccCceEEEeehhhhhhhccC
Q 014617 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQV-----PI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~-l~~~~tv~enl~~l~~~~~i~~-----p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||+|. .+...|+.+|+.+......... .. ..+....... .+......||+.||+++ ..+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL-----~~~ 161 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VME 161 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-----TTC
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999984 3446899999987543211100 00 0000000000 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHH-HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~-~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++||||++||+....++ +++++ ++|.|+ ++.+.++||++++|++|++...+...++
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999876654 46776 559888 6778899999999999999888877665
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=2.4e-28 Score=247.27 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=142.3
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCcccccc
Q 014617 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vf 112 (421)
-.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 13 KLENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 35678888888899999999999999 99999999999999999999999 99999999998753 35699999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc-----ccc------ccccc-ccccccccccccCceEEEeehhhhhhhccCCccce
Q 014617 113 DDPRLTDYDTLLENIRGLKEGKAVQ-----VPI------YDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~-----~p~------~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++.+|+.+|+.+........ ... ..... ..+...+......|||.||+++ ..+|.+++
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lLL 164 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI-----VVEPDVLL 164 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH-----TTCCSEEE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9999999999999999853211100 000 00000 0011111122234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 181 RVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|||+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999766554 566554 8887 7778899999999999999887776666
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=2e-28 Score=246.96 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=147.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.||.+.+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5678888888889999999999999 99999999999999999999999 99999999998753 356999999
Q ss_pred CCCCCccchHHHHHHhhhcccccc-----ccccc----ccccc---ccccccccccCceEEEeehhhhhhhccCCccceE
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSS---RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~---~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++.+|+.+|+.+........ ..... +.... +...+......|||.||+++ ..+|.++++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lLLL 157 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL-----VKEPEVLLL 157 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH-----TTCCSEEEE
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 999999999999998853211100 00000 00000 00001111234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999766554 666544 8887 7778899999999999999887776665
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=2.4e-28 Score=247.37 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=146.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ 107 (421)
.+++++.|+.+.+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5678888888899999999999999 99999999999999999999999 99999999997542 356
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-----ccccc----cccccccc---cccccccCceEEEeehhhhhhhccC
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|+||++.+++.+|+.+|+.+........ ..... +....... .+......|||.||+++ ..+
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL-----~~~ 157 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAI-----VRK 157 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHH-----HTC
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 999999999999999999998853211100 00000 00000000 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++|||+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999766554 566554 8887 7788899999999999999887776665
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=1.6e-28 Score=247.00 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=147.4
Q ss_pred eeeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccc
Q 014617 39 IEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGN 111 (421)
Q Consensus 39 v~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~v 111 (421)
-.+++++.| |.+.+|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 16 ~~~~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 16 EFVGVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred EEEEEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE
Confidence 356788888 77789999999999999 99999999999999999999999 99999999998753 4579999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc-----ccccc----ccccc---ccccccccccCceEEEeehhhhhhhccCCccc
Q 014617 112 FDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSS---RIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~---~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
||++.+++.+|+.+|+.+........ ..... +.... +...+......|||.||+++ ..+|.++
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL-----~~~P~lL 167 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL-----APRPQVL 167 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TTCCSEE
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 99999999999999998853211100 00000 00000 00001111234999999999 9999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 180 LRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++|||+++||+....+++ +++.++ |.|+ ++.+..+||++++|++|++...+...++
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999766554 666554 8887 7788899999999999999887766665
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.2e-28 Score=235.83 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=146.0
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccc
Q 014617 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~v 111 (421)
-.+++++.|+.+.+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 17 ~i~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 17 VVKDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred EEEEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 35788899988899999999999999 99999999999999999999999 99999999998764 3468999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc-----cccc----ccccccccc---cccccccCceEEEeehhhhhhhccCCccc
Q 014617 112 FDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
||++.+++..|+.+|+.+........ .... .+....... .+......||+.||+++ ..+|.++
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL-----~~~p~ll 168 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL-----MVNPRLA 168 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH-----TTCCSEE
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 99999999899999998743110000 0000 000000000 01111234999999999 9999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++||||++||+....++ +++++++|.|+ ++.+..+||++++|.+|++...+...++
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 99999999999876655 46666668887 7888899999999999999766554443
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=2.5e-28 Score=245.16 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=146.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.. +|+++||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 46788888877 9999999999999 99999999999999999999999 99999999998764 356999999
Q ss_pred CCCCCccchHHHHHHhhhcccccc--ccccc----ccccc---ccccccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAVQ--VPIYD----FKSSS---RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~--~p~~~----~~~~~---~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
++.+++.+|+.+|+.+........ ..... +.... +...+......|||.||+++ ..+|.++++|||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL-----~~~P~lLLLDEP 154 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL-----VTNPKILLLDEP 154 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT-----TSCCSEEEEESS
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEECc
Confidence 999999999999998854211100 00000 00000 00001111234999999999 999999999999
Q ss_pred ecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 185 TGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999766554 666544 8887 7778899999999999999887776665
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=2e-28 Score=246.43 Aligned_cols=188 Identities=16% Similarity=0.133 Sum_probs=145.1
Q ss_pred eeeeEEEeCcEE--EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CC
Q 014617 40 EDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (421)
Q Consensus 40 ~~~ls~~~g~~~--~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~ 106 (421)
.+++++.||.+. +|++|||++++|+ +++|+||||||||||+|+|+|++ |++|.|.++|.+.. ++
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 456777777766 9999999999999 99999999999999999999999 99999999997642 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccccc-----ccccc----cccccccc---cccccccCceEEEeehhhhhhhcc
Q 014617 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l 174 (421)
.++|+||++.+++.+|+.+|+.+........ ....+ +....... .+......|||.||+++ ..
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL-----~~ 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL-----VK 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-----TT
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----Hh
Confidence 6999999999999999999998854321110 00000 00000000 01111234999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|.++++|||+++||+....+++ +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999998766554 566544 8887 7778899999999999999887766665
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=1.8e-28 Score=236.24 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=143.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EeeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 5677888888889999999999999 99999999999999999999999 89999999998763 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcc--cc-----------ccccc-c--cccccccccc---------ccccccCceEEEee
Q 014617 111 NFDDPRLTDYDTLLENIRGLKEG--KA-----------VQVPI-Y--DFKSSSRIGY---------RTLEVPSSRIVIIE 165 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~--~~-----------i~~p~-~--~~~~~~~~~~---------~~~~~~~qrVlIae 165 (421)
+||++.+++..|+.+|+.+.... .. ..... . -....+..+. +......||+.||+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 99999999999999999875321 00 00000 0 0000111111 11111349999999
Q ss_pred hhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014617 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 166 gl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
++ ..+|.++++||||++||+.....++ ++++++|.|+ ++.+..+||++++|++|++...+...+
T Consensus 167 aL-----~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 167 AL-----MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HH-----HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HH-----HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99 9999999999999999999766554 6666668887 566788999999999999876554443
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=2.3e-27 Score=226.60 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=141.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+. +|++|||++++ + ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4677888876 49999999999 9 99999999999999999999999 99999999998753 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccc---cccc----cccccccccc---cccccccCceEEEeehhhhhhhccCCccceEEE
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAV---QVPI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i---~~p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
++.+++..|+.+|+.+....... .... ..+....... .+......||+.||+++ ..+|.++++||
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral-----~~~p~lllLDE 152 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL-----VIQPRLLLLDE 152 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH-----TTCCSSBEEES
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEeC
Confidence 99999999999999874321000 0000 0000000000 01111234999999999 99999999999
Q ss_pred EecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 184 VTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 184 pts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
||++||+...+.++ ++++++ |.|+ ++.+.++||++++|++|++...+...++
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999766554 666544 8888 7788899999999999999877766555
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=7.2e-28 Score=237.90 Aligned_cols=220 Identities=16% Similarity=0.150 Sum_probs=160.3
Q ss_pred CCCCCCCccccccccceeeeeecCccee---cCeeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHH
Q 014617 7 SGADSPRRRPGLLRDQVQLVKKKDSDRY---EIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (421)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~y---~~~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL 82 (421)
+...+.+|...++............... ...--.++++|.|+ ...+|++|||++++|+ ++||+||||||||||
T Consensus 20 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHH
Confidence 3445666777777665544322211111 12345789999994 6789999999999999 999999999999999
Q ss_pred HHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---cccc-----ccccc--
Q 014617 83 TEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQVP-----IYDFK-- 144 (421)
Q Consensus 83 ~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~p-----~~~~~-- 144 (421)
+++|+|++ |++|.|.+||.++. ++.++|+||+|.+|+ .|+.+|+.+...... +... ..++.
T Consensus 97 l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (306)
T 3nh6_A 97 LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA 175 (306)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHh
Confidence 99999999 99999999999764 346999999999985 599999987542110 0000 00000
Q ss_pred ----cccccc---cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HH
Q 014617 145 ----SSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EE 209 (421)
Q Consensus 145 ----~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~ 209 (421)
.....+ ........||+.||+++ ..+|.++++||||++||+...+.+++.+.+ ++.|+ ++
T Consensus 176 lp~gl~t~~~~~g~~LSGGqrQRvaiARAL-----~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTI-----LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp STTGGGCEESTTSBCCCHHHHHHHHHHHHH-----HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred ccchhhhHhcCCcCCCCHHHHHHHHHHHHH-----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 000111 11112234999999999 889999999999999999988777654433 36676 67
Q ss_pred HHHHHhceEEEccCcEEeecCCcccEE
Q 014617 210 IIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 210 vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+.. ||+|++|.+|+|.+.+.+.++.
T Consensus 251 ~~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 251 TVVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 6765 9999999999999999887774
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=1.7e-27 Score=232.35 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=139.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig 109 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 5677888888889999999999999 99999999999999999999999 99999999998653 34689
Q ss_pred cccCCCCCC--ccchHHHHHHhhhcc------ccccc-ccccccccccccc---------ccccccCceEEEeehhhhhh
Q 014617 110 GNFDDPRLT--DYDTLLENIRGLKEG------KAVQV-PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 110 ~vfq~p~l~--~~~tv~enl~~l~~~------~~i~~-p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
|+||++.++ ...|+.+|+.+.... ..... ...-....+..+. +......||+.||+++
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL---- 176 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL---- 176 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH----
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH----
Confidence 999997643 245999999864211 00000 0000000011110 1111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH--------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP--------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti--------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+...+.++ +++.++|.|+ ++.+.++||++++|.+|++...+...++
T Consensus 177 -~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 177 -MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp -HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred -hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999766554 6665557766 5667789999999999998766544443
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=5e-27 Score=227.35 Aligned_cols=188 Identities=15% Similarity=0.081 Sum_probs=142.0
Q ss_pred eeeeEEEeC--c---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccc
Q 014617 40 EDTLSFEKG--F---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g--~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig 109 (421)
.+++++.|+ . +.+|+++||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 456777775 4 689999999999999 99999999999999999999999 99999999998753 45699
Q ss_pred cccCCC-CCCccchHHHHHHhhhccc-c-cccccccccccccccc-----------ccccccCceEEEeehhhhhhhccC
Q 014617 110 GNFDDP-RLTDYDTLLENIRGLKEGK-A-VQVPIYDFKSSSRIGY-----------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 110 ~vfq~p-~l~~~~tv~enl~~l~~~~-~-i~~p~~~~~~~~~~~~-----------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
|+||+| ..+...|+.+|+.+..... . ......-....+..+. +......||+.||+++ ..+
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL-----~~~ 156 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI-----VHE 156 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH-----TTC
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 999996 4566789999998753211 0 0000000000111111 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++||||++||+.....++ ++++++|.|+ ++.+..+||++++|++|++...+...++
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999766554 6665568887 5667889999999999999877766555
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=8.1e-27 Score=226.59 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=139.0
Q ss_pred eeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014617 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
.+++++.|+. ..+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 4566777764 679999999999999 99999999999999999999999 99999999998763 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccc-c-c-------ccccc------cccccccc---ccccccCceEEEeehhhhh
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKEGKAV-Q-V-------PIYDF------KSSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i-~-~-------p~~~~------~~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
+|+||++.+++ .|+.+|+.+....... . . ...++ ......+. +......||+.||+++
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL--- 171 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL--- 171 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH---
T ss_pred EEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH---
Confidence 99999999887 5999999875321100 0 0 00000 00000010 1111234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH----cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR----VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~----~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+.....+++-+.+ +|.|+ ++.+. .||++++|.+|++...+...++
T Consensus 172 --~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 172 --IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp --TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEECHHHH
T ss_pred --hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999987776654432 37777 56665 4999999999999877766555
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=1.4e-26 Score=222.27 Aligned_cols=183 Identities=18% Similarity=0.155 Sum_probs=136.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecCC--------Ccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~~--------~~i 108 (421)
.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|+ + |++|.|.++|.+... ..+
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 5678888888899999999999999 9999999999999999999998 6 899999999987631 247
Q ss_pred ccccCCCCCCccchHHHHHHhhhc---cccc-----cccc------cccc--cccccccc-cccccCceEEEeehhhhhh
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKE---GKAV-----QVPI------YDFK--SSSRIGYR-TLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~---~~~i-----~~p~------~~~~--~~~~~~~~-~~~~~~qrVlIaegl~~L~ 171 (421)
+|+||++.+++..|+.+|+.+... +... .... .... ...+...+ ......||+.||+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL---- 158 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL---- 158 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH----
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH----
Confidence 899999999999999999976421 1000 0000 0110 00110011 222235999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEeecC
Q 014617 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDL 230 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~ 230 (421)
..+|.++++||||++||+.....++ +++.++|.|+ ++.+..+ ||++++|++|++...+
T Consensus 159 -~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g 226 (250)
T 2d2e_A 159 -VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226 (250)
T ss_dssp -HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEE
T ss_pred -HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEe
Confidence 8999999999999999999877665 4444457777 5666777 5999999999986544
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=3.9e-27 Score=225.87 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=141.2
Q ss_pred eeeeeeEEEe--CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014617 38 PIEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~--g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
...+++++.| +...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 3567889999 46789999999999999 99999999999999999999999 99999999998764 235
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---ccc-----ccccccc------ccccc---cccccccCceEEEeehhhhh
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYDFKS------SSRIG---YRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~-----p~~~~~~------~~~~~---~~~~~~~~qrVlIaegl~~L 170 (421)
++|+||++.+++ .|+.+|+.+...... +.. ...++.. ....+ .+......||+.||+++
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL--- 160 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL--- 160 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH---
T ss_pred EEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH---
Confidence 899999999887 599999987421110 000 0000000 00000 01112234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+.....++ +++. +|.|+ ++.+. .||++++|.+|++...+...++
T Consensus 161 --~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 161 --VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp --TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHH
T ss_pred --hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999876665 4553 48777 55554 4999999999999877766665
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=7.4e-27 Score=223.16 Aligned_cols=185 Identities=18% Similarity=0.212 Sum_probs=137.4
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014617 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.| +...+|++|||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 46778888 56789999999999999 99999999999999999999999 99999999998653 346899
Q ss_pred ccCCCCCCccchHHHHHHhhh-cccc---ccc-----ccccccc------ccccc---cccccccCceEEEeehhhhhhh
Q 014617 111 NFDDPRLTDYDTLLENIRGLK-EGKA---VQV-----PIYDFKS------SSRIG---YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~-~~~~---i~~-----p~~~~~~------~~~~~---~~~~~~~~qrVlIaegl~~L~d 172 (421)
+||++.+++ .|+.+|+.+.. .... +.. ...++.. ....+ .+......||+.||+++
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral----- 154 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF----- 154 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH-----
T ss_pred EcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH-----
Confidence 999999887 49999998742 1110 000 0000000 00000 01111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 173 KLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+...+ ++++++. +|.|+ ++.+. .||++++|.+|++...+...++
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998544 4456665 58777 56565 5999999999999766554443
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.93 E-value=2.8e-26 Score=220.69 Aligned_cols=180 Identities=13% Similarity=0.030 Sum_probs=136.6
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014617 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
.+++++.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+ ++.++|+||++.+
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEEEECSCCCC
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEEEEcCCCcc
Confidence 567788887 7789999999999999 99999999999999999999999 99999982 4579999999999
Q ss_pred CccchHHHHHHhhhccc-c------cc--cccc----ccccccccc---cccccccCceEEEeehhhhhhhccCCccceE
Q 014617 118 TDYDTLLENIRGLKEGK-A------VQ--VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~-~------i~--~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++..|+.+|+.+..... . .. .... .+....... .+......||+.||+++ ..+|.++++
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~lllL 152 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI-----ASECKLILL 152 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH-----HTTCSEEEE
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 88899999998753210 0 00 0000 000000000 01111234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014617 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
||||++||+...+.++ ++++++ |.|+ .+.+.++||++++|.+|+ ...+...+
T Consensus 153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 9999999999766554 666555 8887 788889999999999998 65544333
No 29
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.2e-27 Score=237.01 Aligned_cols=187 Identities=9% Similarity=0.053 Sum_probs=141.8
Q ss_pred eeeeeEEEe--CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccc
Q 014617 39 IEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~--g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig 109 (421)
-.+++++.| +...+|++|||++++|+ +++|+||||||||||+|+|+|+++++|.|.+||.++. ++.++
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig 97 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFG 97 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEE
T ss_pred EEEEEEEEecCCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEE
Confidence 467788888 67889999999999999 9999999999999999999999988899999998764 25689
Q ss_pred cccCCCCCCccchHHHHHHhhhccc--ccc-------cc-cccccccc---ccc---cccccccCceEEEeehhhhhhhc
Q 014617 110 GNFDDPRLTDYDTLLENIRGLKEGK--AVQ-------VP-IYDFKSSS---RIG---YRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~--~i~-------~p-~~~~~~~~---~~~---~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
|+||++.+|+ .|+.+|+....... .+. .. ..+..... ..+ ........|||.||+++ .
T Consensus 98 ~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL-----~ 171 (390)
T 3gd7_A 98 VIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV-----L 171 (390)
T ss_dssp EESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH-----H
T ss_pred EEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH-----h
Confidence 9999999987 69999997432110 000 00 00000000 000 00111234999999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.+|.++++|||+++||+....++++.+.+ +|.|+ ++.+ ..||++++|++|+|...+...++
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999988777766654 36666 4444 45999999999999988887776
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.92 E-value=2.2e-26 Score=222.98 Aligned_cols=188 Identities=14% Similarity=0.091 Sum_probs=139.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecCC--------Ccc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~~--------~~i 108 (421)
.+++++.|+.+.+|++|||++++|+ ++||+||||||||||+|+|+|+ . |++|.|.++|.+... +.+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 5677888888889999999999999 9999999999999999999999 4 789999999987531 237
Q ss_pred ccccCCCCCCccchHHHHHHhhhc------ccc-ccccc---ccccccccccc------c-----cccccCceEEEeehh
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKE------GKA-VQVPI---YDFKSSSRIGY------R-----TLEVPSSRIVIIEGI 167 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~------~~~-i~~p~---~~~~~~~~~~~------~-----~~~~~~qrVlIaegl 167 (421)
+|+||++.+++..|+.+|+..... +.. ..... .-....+..+. + ......||+.||+++
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 899999999999999999875321 100 00000 00000000110 1 111134999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHHHHHH---HcCCCH------HHHHHHH-hceEEEccCcEEeecCCcccE
Q 014617 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ---RVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~---~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+.....+++-+. ++|.|+ ++.+..+ ||++++|.+|++...+...++
T Consensus 180 -----~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 180 -----VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp -----HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred -----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999998777665443 347777 5666665 899999999999876655543
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.92 E-value=2.7e-26 Score=220.36 Aligned_cols=175 Identities=7% Similarity=-0.006 Sum_probs=132.3
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccch
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~t 122 (421)
.+|+++||++++|+ +++|+||||||||||+++|+|++ |+ |.|.++|.+.. ++.++|++|++.+++..|
T Consensus 14 ~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 58999999999999 99999999999999999999999 88 99999998753 245899999999988899
Q ss_pred HHHHHHhhhccccccccc----cccccccccc---cccccccCceEEEeehhhhhhhccCCc-------cceEEEEecCc
Q 014617 123 LLENIRGLKEGKAVQVPI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPL-------IDLRVSVTGGV 188 (421)
Q Consensus 123 v~enl~~l~~~~~i~~p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~-------ldL~DEpts~L 188 (421)
+.+|+.+........... ..+....... .+......||+.||+++ ..+|. ++++||||++|
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 90 VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV-----LQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp HHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH-----HHHCTTTCTTCCEEEESSTTTTC
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCcCCCCCeEEEEECCcccC
Confidence 999998743111000000 0000000001 01111234999999999 78888 99999999999
Q ss_pred cHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014617 189 HFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 189 D~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
|+.....+. +++.++|.|+ .+.+.++||++++|++|++...+...+
T Consensus 165 D~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999766554 6665568887 788889999999999999876554333
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=3.3e-26 Score=215.10 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=127.8
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec--CCCccccccCC
Q 014617 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDD 114 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~--~~~~ig~vfq~ 114 (421)
--.+++++.|+. .+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+. .++.++|++|+
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 356788888888 99999999999999 99999999999999999999999 9999999999875 24568999999
Q ss_pred CCCCccchHHHHHHhhhccc--ccc-ccc------cccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014617 115 PRLTDYDTLLENIRGLKEGK--AVQ-VPI------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~~~--~i~-~p~------~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+.+++..|+.+|+.+..... ... ... .......+...+......||+.||+++ ..+|.++++||||
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL-----~~~p~lllLDEPt 161 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTL-----LVNAEIYVLDDPV 161 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT-----TSCCSEEEEESTT
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEECCC
Confidence 99998899999998743210 000 000 000000000001111234999999999 9999999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEE
Q 014617 186 GGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVY 219 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~ 219 (421)
++||+....+++ +++.++|.|+ ++.+..+||+++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999998766554 5555456665 444555666654
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.5e-25 Score=216.93 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=139.6
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC----CCccc-c
Q 014617 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIID-G 110 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~----~~~ig-~ 110 (421)
.+++++.|+. ..+|+++||+++ |+ +++|+||||||||||+|+|+|++|++|.|.++|.+.. ++.++ |
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence 4567777766 789999999999 99 9999999999999999999999999999999998643 45789 9
Q ss_pred ccCCCCCCccchHHHHHHhhhccccc-ccc------ccccc-c-ccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014617 111 NFDDPRLTDYDTLLENIRGLKEGKAV-QVP------IYDFK-S-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i-~~p------~~~~~-~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
+||++.+ ..|+.+|+.+....... ... ..... . ..+...+......||+.||+++ ..+|.++++
T Consensus 80 v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL-----~~~p~lllL 152 (263)
T 2pjz_A 80 LPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL-----ASQPEIVGL 152 (263)
T ss_dssp CGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH-----HTCCSEEEE
T ss_pred eCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEE
Confidence 9999987 78999999875321000 000 01110 0 0000011111234999999999 999999999
Q ss_pred EEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhc-eEEEccCcEEeecCCcccE
Q 014617 182 VSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISE-TVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d-~V~~m~~g~I~p~~~~aDi 235 (421)
||||++||+....++.+-+.+-..|+ ++.+.++|| ++++|.+|++...+...++
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 99999999999888877666542266 567788999 9999999999776654444
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.91 E-value=2.4e-25 Score=210.94 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=134.7
Q ss_pred eeeeEEEe--CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC
Q 014617 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~--g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
.+++++.| +...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++| .++|++|++.
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~~~ 79 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQFSW 79 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecCCc
Confidence 45677777 35789999999999999 99999999999999999999999 9999999998 4899999999
Q ss_pred CCccchHHHHHHhhhcccc--cccc--cccccc-cc--------ccc---cccccccCceEEEeehhhhhhhccCCccce
Q 014617 117 LTDYDTLLENIRGLKEGKA--VQVP--IYDFKS-SS--------RIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~--i~~p--~~~~~~-~~--------~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
+++. |+.+|+.+...... .... ...... .. ..+ .+......||+.||+++ ..+|.+++
T Consensus 80 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral-----~~~p~lll 153 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----YKDADLYL 153 (229)
T ss_dssp CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH-----HSCCSEEE
T ss_pred ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 8885 99999987421100 0000 000000 00 000 01111234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHHHHH-HH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 181 RVSVTGGVHFDLVKRVFRDI-QR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIlrdl-~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+||||++||+....++++.+ .+ +|.|+ ++.+. .||++++|++|++...+...++
T Consensus 154 LDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 154 LDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp EESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHH
T ss_pred EECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 99999999999888877653 22 36676 55565 5999999999999876655554
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=1.2e-25 Score=216.99 Aligned_cols=187 Identities=15% Similarity=0.111 Sum_probs=136.0
Q ss_pred eeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCcc
Q 014617 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~i 108 (421)
-.+++++.|+. ..+|++|||++++|+ ++||+||||||||||+++|+|+++.+|.|.++|.+.. ++.+
T Consensus 19 ~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 19 EFSDVNFSYPKQTNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp EEEEEEECCTTCCSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred EEEEEEEEeCCCCcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 35567777764 468999999999999 9999999999999999999999944899999998753 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc---cccccccccccc-----------ccc---cccccccCceEEEeehhhhhh
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKEGKA---VQVPIYDFKSSS-----------RIG---YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~---i~~p~~~~~~~~-----------~~~---~~~~~~~~qrVlIaegl~~L~ 171 (421)
+|+||++.+++ .|+.+|+.+...... +........... ..+ .+......||+.||+++
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL---- 170 (260)
T 2ghi_A 96 GIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL---- 170 (260)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH----
T ss_pred EEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH----
Confidence 99999999886 599999987421110 000000000000 000 01111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+.....+++-+.+ +|.|+ ++.+. .||++++|.+|++...+...++
T Consensus 171 -~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 240 (260)
T 2ghi_A 171 -LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDL 240 (260)
T ss_dssp -HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHH
T ss_pred -HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 899999999999999999987766543332 37776 45554 5999999999999877665554
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.91 E-value=8e-26 Score=215.36 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=134.9
Q ss_pred eeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC
Q 014617 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
.+++++.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++| .++|++|++.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~ 76 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQAW 76 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCCCc
Confidence 467778886 4789999999999999 99999999999999999999999 9999999998 4899999987
Q ss_pred CCccchHHHHHHhhhccccccc-cccc-cccc--------------cccccccccccCceEEEeehhhhhhhccCCccce
Q 014617 117 LTDYDTLLENIRGLKEGKAVQV-PIYD-FKSS--------------SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~-p~~~-~~~~--------------~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
+ ...|+.+|+.+......... .... .... .....+......||+.||+++ ..+|.+++
T Consensus 77 ~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL-----~~~p~lll 150 (237)
T 2cbz_A 77 I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV-----YSNADIYL 150 (237)
T ss_dssp C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH-----HHCCSEEE
T ss_pred C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 5 46799999987532110000 0000 0000 000011112234999999999 89999999
Q ss_pred EEEEecCccHHHHHHHHHHHH-----HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 181 RVSVTGGVHFDLVKRVFRDIQ-----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIlrdl~-----~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+||||++||+.....+++.+. .+|.|+ .+.+. +||++++|.+|++...+...++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999998888876662 247776 44444 6999999999999776655554
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=1.6e-24 Score=231.75 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=143.4
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014617 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
--.+++++.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 346788999864 479999999999999 99999999999999999999999 99999999998764 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc--cccccc---------ccc----c--cccccc---cccccccCceEEEeeh
Q 014617 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQVPI---------YDF----K--SSSRIG---YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~~p~---------~~~----~--~~~~~~---~~~~~~~~qrVlIaeg 166 (421)
.+++++|+|.+++ .|+.+|+.+..... ..+... .++ . .....+ .+......||+.||++
T Consensus 419 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 6899999999987 59999998753210 000000 000 0 000111 1111223499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+ ..+|.++++||||+++|+...+.+.+.+.+ +|+|+ ++.+. .||++++|++|++.+.+.+.++.
T Consensus 498 l-----~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 498 L-----LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp H-----HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC--
T ss_pred H-----HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 9 889999999999999999987776654443 37776 56665 59999999999999999888875
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=7.8e-25 Score=233.82 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=146.2
Q ss_pred eeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014617 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|+ ...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.++. ++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 45678999984 5789999999999999 99999999999999999999999 99999999998764 356
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---ccc-----ccccc------ccccccc---cccccccCceEEEeehhhhh
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYDF------KSSSRIG---YRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~-----p~~~~------~~~~~~~---~~~~~~~~qrVlIaegl~~L 170 (421)
++|++|+|.+++. |+++|+.+...... +.. ...++ ......+ .+......||+.|||++
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal--- 494 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL--- 494 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH---
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH---
Confidence 9999999999965 99999986532110 000 00000 0000111 11112234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+++.+.+.+ +|+|+ .+.+. .||++++|++|++.+.+.+.++.
T Consensus 495 --~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 495 --VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp --HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred --HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999988887765543 47777 56554 89999999999999998887773
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=1.5e-24 Score=231.35 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014617 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.+++++.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 456789999974 789999999999999 99999999999999999999999 99999999998753 357
Q ss_pred cccccCCCCCCccchHHHHHHhhh-cccc---cccc-----cccccc------ccccc---cccccccCceEEEeehhhh
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLK-EGKA---VQVP-----IYDFKS------SSRIG---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~-~~~~---i~~p-----~~~~~~------~~~~~---~~~~~~~~qrVlIaegl~~ 169 (421)
+++++|+|.+++ .|+.+|+.+.. .... +... ..++.. ....+ .+......||+.||+++
T Consensus 419 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral-- 495 (582)
T 3b5x_A 419 FALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL-- 495 (582)
T ss_pred eEEEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH--
Confidence 999999999987 49999998753 1110 0000 000000 00011 11112235999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+++.+.+.+ +|+|+ .+.+. .||++++|++|++.+.+.+.++.
T Consensus 496 ---~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 496 ---LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred ---HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999988777654443 37777 55555 69999999999999988877763
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=9.6e-25 Score=232.69 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=144.0
Q ss_pred eeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014617 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|+ ...+|+|+||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++.
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35678899985 3679999999999999 99999999999999999999999 99999999999764 346
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc---cccc-----ccc----c--cccccccc---ccccccCceEEEeehhhhh
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---VQVP-----IYD----F--KSSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~p-----~~~----~--~~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
+++++|+|.+++. |+++|+.+...... +... ..+ + ......+. +......||+.|||++
T Consensus 417 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral--- 492 (578)
T 4a82_A 417 IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF--- 492 (578)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH---
T ss_pred eEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH---
Confidence 9999999999875 99999987532111 0000 000 0 00011111 1112235999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+.+.+-+.+ +|+|+ ++.+. .||++++|++|++.+.+.+.++.
T Consensus 493 --~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 493 --LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp --HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred --HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987776654432 46676 45554 49999999999999998887763
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.4e-24 Score=232.36 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=144.5
Q ss_pred eeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014617 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
--.++++|.|+ ...+|+|+||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++.+
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 45678899986 4679999999999999 99999999999999999999999 99999999999764 3469
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc---ccccc-----ccccc------ccccc---cccccccCceEEEeehhhhhh
Q 014617 109 DGNFDDPRLTDYDTLLENIRGLKEGKA---VQVPI-----YDFKS------SSRIG---YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~---i~~p~-----~~~~~------~~~~~---~~~~~~~~qrVlIaegl~~L~ 171 (421)
++++|+|.+++ .|+++|+.+...... +.... .++.. ....+ .+......||+.|||++
T Consensus 432 ~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral---- 506 (598)
T 3qf4_B 432 GIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF---- 506 (598)
T ss_dssp EEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH----
T ss_pred EEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH----
Confidence 99999999986 599999987532111 00000 00000 00000 01112234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+.+.+.+.+ +|+|+ .+.+.. ||++++|++|++.+.+.+.++.
T Consensus 507 -~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 507 -LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp -HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred -hcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987777644433 47777 555554 9999999999999999888774
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=1.7e-24 Score=230.99 Aligned_cols=188 Identities=15% Similarity=0.129 Sum_probs=143.1
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014617 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.+++++.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 356788999973 689999999999999 99999999999999999999999 99999999998764 246
Q ss_pred cccccCCCCCCccchHHHHHHhhh-cccc---ccc-----cccccc------cccccc---cccccccCceEEEeehhhh
Q 014617 108 IDGNFDDPRLTDYDTLLENIRGLK-EGKA---VQV-----PIYDFK------SSSRIG---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~-~~~~---i~~-----p~~~~~------~~~~~~---~~~~~~~~qrVlIaegl~~ 169 (421)
+++++|+|.+++. |+.+|+.+.. .... +.. ...++. .....+ .+......||+.||+++
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral-- 495 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL-- 495 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH--
T ss_pred CeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH--
Confidence 8999999999974 9999998754 1110 000 000000 000111 11112234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+...+++.+.+.+ +|+|+ ++.+. .||++++|++|++.+.+.+.++
T Consensus 496 ---~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 496 ---LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp ---HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHH
T ss_pred ---HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence 889999999999999999987776644432 37777 45554 6999999999999888877666
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=4e-24 Score=246.70 Aligned_cols=191 Identities=19% Similarity=0.193 Sum_probs=148.3
Q ss_pred eeeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------C
Q 014617 37 VPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (421)
Q Consensus 37 ~~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~ 105 (421)
....++++|.|.. .++|+||||+|++|+ .+||+|+||||||||+++|.+++ |++|.|.+||.++. |
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 4567899999953 479999999999999 99999999999999999999999 99999999999875 5
Q ss_pred CccccccCCCCCCccchHHHHHHhhhccccccc----------ccccc----c--ccccccc---ccccccCceEEEeeh
Q 014617 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV----------PIYDF----K--SSSRIGY---RTLEVPSSRIVIIEG 166 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~----------p~~~~----~--~~~~~~~---~~~~~~~qrVlIaeg 166 (421)
+++++++|+|.+|+ .|+++||.+......... ...++ . ....++. .......||+.||||
T Consensus 1153 ~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 77999999999997 599999976432111000 00000 0 0011111 111223599999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCHHHHHH-----HHhceEEEccCcEEeecCCcccEE
Q 014617 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIH-----QISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti~~vi~-----~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+ .-+|.++++||||+++|+++.+.|.+.+.+ +|+|+.-+.| +-||+|++|++|+|.+.|.+.+++
T Consensus 1232 l-----lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1232 L-----VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp H-----HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred H-----HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9 789999999999999999998888877765 3788733333 248999999999999999999885
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.87 E-value=1.1e-23 Score=206.47 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=126.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++. ...+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++| .++|+||++.++
T Consensus 43 ~~~l~~~--~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 43 FSNFSLL--GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSWIM 111 (290)
T ss_dssp ---------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCCCC
T ss_pred EEEEEEc--CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCccC
Confidence 3455554 3579999999999999 99999999999999999999999 8999999998 489999999988
Q ss_pred ccchHHHHHHhhhcccc--cccc--cccccc-cccc--------c---cccccccCceEEEeehhhhhhhccCCccceEE
Q 014617 119 DYDTLLENIRGLKEGKA--VQVP--IYDFKS-SSRI--------G---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~--i~~p--~~~~~~-~~~~--------~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~D 182 (421)
+. |+.+|+. ...... .... ...... .... + .+......||+.||+++ ..+|.++++|
T Consensus 112 ~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL-----~~~p~lllLD 184 (290)
T 2bbs_A 112 PG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----YKDADLYLLD 184 (290)
T ss_dssp SS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH-----HSCCSEEEEE
T ss_pred cc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 85 9999997 321000 0000 000000 0000 0 01111234999999999 9999999999
Q ss_pred EEecCccHHHHHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 183 SVTGGVHFDLVKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 183 Epts~LD~~~~rrIlrdl-~--~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++||+....++++.+ . .+|.|+ ++.+. .||++++|.+|++...+...++
T Consensus 185 EPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 185 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp STTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence 999999999888877643 1 237776 56565 5999999999999776655544
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=1.8e-22 Score=232.32 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=145.1
Q ss_pred eeeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------C
Q 014617 37 VPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (421)
Q Consensus 37 ~~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~ 105 (421)
.--.++++|.|+. ..+|+||||++++|+ ++||+||||||||||+++|.|++ |++|.|.+||.++. +
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 3456889999963 479999999999999 99999999999999999999999 99999999999764 3
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccc---cccc-----cccc----c--ccccccc---ccccccCceEEEeehhh
Q 014617 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQVP-----IYDF----K--SSSRIGY---RTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~p-----~~~~----~--~~~~~~~---~~~~~~~qrVlIaegl~ 168 (421)
+.+++++|+|.+++. |+++|+.+...... +... ..++ . .....+. .......||+.|||++
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal- 541 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL- 541 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH-
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH-
Confidence 469999999999875 99999987542110 0000 0000 0 0001111 1112234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHHHHHH--HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~--~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||++||+.+.+.+.+-+. .+|+|+ .+.+.. ||++++|++|++.+.+.+.++.
T Consensus 542 ----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 542 ----VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp ----HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred ----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999998776654443 347777 666655 9999999999999988877764
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=1.6e-22 Score=233.32 Aligned_cols=215 Identities=17% Similarity=0.161 Sum_probs=156.8
Q ss_pred CCccccccccceeeeeecCc----ceecCeeeeeeeEEEeC---cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHH
Q 014617 12 PRRRPGLLRDQVQLVKKKDS----DRYEIVPIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (421)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~~~----~~y~~~~v~~~ls~~~g---~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r 84 (421)
-+|..+++..+..+...... .........++++|.|+ +.++|+|+||++++|+ .++|+||||||||||++
T Consensus 386 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 386 ASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ---TVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp HHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC---EEEEEECSSSCHHHHHH
T ss_pred HHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc---EEEEEecCCCcHHHHHH
Confidence 34566666555443322221 11223456789999995 4689999999999999 99999999999999999
Q ss_pred HHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---ccc-----c----ccccc
Q 014617 85 KVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----P----IYDFK 144 (421)
Q Consensus 85 ~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~-----p----~~~~~ 144 (421)
+|.|++ |++|.|.+||.++. ++.++|++|+|.+|+ .|+++||.+...... +.. . ...+.
T Consensus 463 ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp 541 (1321)
T 4f4c_A 463 LLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLP 541 (1321)
T ss_dssp HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHST
T ss_pred HhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCC
Confidence 999999 99999999999865 457999999999886 699999988643211 000 0 00000
Q ss_pred c--ccccccc---cccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHH
Q 014617 145 S--SSRIGYR---TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEII 211 (421)
Q Consensus 145 ~--~~~~~~~---~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi 211 (421)
. ...+|.. ......||+.||||+ .-+|.++++||||+++|+++.+.+.+.+.+ +|+|+ ...+
T Consensus 542 ~G~~T~vGe~G~~LSGGQkQRiaiARAl-----~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 542 NGYNTLVGDRGTQLSGGQKQRIAIARAL-----VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp TTTSSEESSSSCCCCHHHHHHHHHHHHH-----TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred CCCccEecCCCCCCCHHHHHHHHHHHHH-----ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 0 1111211 112235999999999 779999999999999999976666655543 47776 3333
Q ss_pred HHHhceEEEccCcEEeecCCcccEE
Q 014617 212 HQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 212 ~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+.||+|++|++|+|.+.|.+.+++
T Consensus 617 -~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 617 -RNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp -TTCSEEEEEETTEEEEEECHHHHH
T ss_pred -HhCCEEEEeeCCeeeccCCHHHHH
Confidence 469999999999999999999985
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=4.5e-22 Score=229.05 Aligned_cols=189 Identities=18% Similarity=0.202 Sum_probs=144.1
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014617 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
...++++|.|+. ..+|+++||++++|| ++||+|+||||||||+++|.|+. |++|.|.+||.++. ++
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 456788998863 469999999999999 99999999999999999999999 99999999998764 46
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccc-----cc-----ccccc----c--ccccccc---ccccccCceEEEeehh
Q 014617 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAV-----QV-----PIYDF----K--SSSRIGY---RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-----~~-----p~~~~----~--~~~~~~~---~~~~~~~qrVlIaegl 167 (421)
.+++++|+|.+++ .|+++|+......... .. ...++ . .....+. .......||+.|||++
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 7999999998875 6999999764321100 00 00000 0 0011111 1112234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+.+.+-+.+ +|+|+ ++.+. .||++++|++|++.+.+.+.++.
T Consensus 1187 -----~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1187 -----VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp -----HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHH
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999987776655543 47887 45554 49999999999999998887774
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=1.4e-20 Score=199.12 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=127.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|++. .+++++|++.+|+ ++||+||||||||||+++|+|++ |++|.|.+ ...++|++|++...
T Consensus 290 ~~~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 290 YPRLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIKAD 359 (538)
T ss_dssp ECCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCCCC
T ss_pred EeeEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCcCC
Confidence 34667777764 6899999999999 99999999999999999999999 89999985 34689999998877
Q ss_pred ccchHHHHHHhh-hcccc----cccccccccccccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014617 119 DYDTLLENIRGL-KEGKA----VQVPIYDFKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 119 ~~~tv~enl~~l-~~~~~----i~~p~~~~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
...|+.+++... ..... +..-...+........ .......|||.||+++ ..+|.++++||||++||+
T Consensus 360 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL-----~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL-----LRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH-----TSCCSEEEEECTTTTCCH
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCcccCCH
Confidence 778898887654 11100 0000000000000000 1111234999999999 999999999999999999
Q ss_pred HHHHHHH---HHHH-HcCCCH------HHHHHHHhceEEEccC--cEEeecCC
Q 014617 191 DLVKRVF---RDIQ-RVGQEP------EEIIHQISETVYPMYK--AFIEPDLQ 231 (421)
Q Consensus 191 ~~~rrIl---rdl~-~~G~ti------~~vi~~~~d~V~~m~~--g~I~p~~~ 231 (421)
.....+. +++. +.|.|+ ++.+..+||++++|++ |.+...+.
T Consensus 435 ~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 435 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCC
Confidence 9766554 6655 358887 7889999999999975 44433333
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.80 E-value=1.6e-20 Score=201.04 Aligned_cols=177 Identities=14% Similarity=0.087 Sum_probs=127.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|++. .+++++|++.+|+ ++||+||||||||||+|+|+|++ |++|.|.+ ...++|++|++...
T Consensus 360 ~~~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 360 YPRLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAE 429 (607)
T ss_dssp ECCEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCCCC
T ss_pred EeceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCccCC
Confidence 35667777664 6899999999999 99999999999999999999999 89999876 34689999998877
Q ss_pred ccchHHHHHHhh-hcccc----ccc--ccccccc-ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014617 119 DYDTLLENIRGL-KEGKA----VQV--PIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 119 ~~~tv~enl~~l-~~~~~----i~~--p~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
...|+.+++... ..... +.. ....... ..+...+......|||.||+++ ..+|.++++||||++||+
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL-----~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL-----LRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH-----TSCCSEEEEECTTTTCCH
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCccCCCH
Confidence 778998887654 11100 000 0000000 0000001111234999999999 999999999999999999
Q ss_pred HHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccC--cEEeecCC
Q 014617 191 DLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYK--AFIEPDLQ 231 (421)
Q Consensus 191 ~~~rrI---lrdl~~-~G~ti------~~vi~~~~d~V~~m~~--g~I~p~~~ 231 (421)
.....+ ++++.+ +|.|+ ++.+..+||++++|++ |.+...+.
T Consensus 505 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 505 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCC
Confidence 976654 466653 58887 7888999999999974 44433333
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.80 E-value=5.3e-20 Score=194.56 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=125.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|++. .++.+++++++|+ ++||+||||||||||+++|+|++ |++|.|.+++ ..+++++|++...
T Consensus 272 ~~~l~~~~~~~-~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 272 WTKIIKKLGDF-QLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----QILSYKPQRIFPN 342 (538)
T ss_dssp ECCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----CCEEEECSSCCCC
T ss_pred EcceEEEECCE-EEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----eeeEeechhcccc
Confidence 34667777764 5788899999999 99999999999999999999999 9999998764 4578999987766
Q ss_pred ccchHHHHHHhhhcccccccc------cccccccccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014617 119 DYDTLLENIRGLKEGKAVQVP------IYDFKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~~p------~~~~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
...++.+|+............ ...+........ +......|||.||+++ ..+|.++++||||++||
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL-----~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL-----AKEADLYVLDQPSSYLD 417 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH-----HSCCSEEEEESTTTTCC
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEeCCccCCC
Confidence 678999998764221100000 000000000000 1111134999999999 99999999999999999
Q ss_pred HHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCc
Q 014617 190 FDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 190 ~~~~rrI---lrdl~~-~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+.....+ ++++++ .|.|+ ++.+..+||++++|+++
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9876554 566655 48886 88899999999999753
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=2.3e-20 Score=197.40 Aligned_cols=172 Identities=12% Similarity=0.158 Sum_probs=121.3
Q ss_pred eeeeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE---------EECCeecC---
Q 014617 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS--- 104 (421)
Q Consensus 39 v~~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I---------~~Dg~~~~--- 104 (421)
+.+++++.||.. .+++++| .+++|+ ++||+||||||||||+|+|+|++ |++|.+ .++|....
T Consensus 23 ~~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 23 LEEDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp -CCCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred HhcCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 346788888875 5899999 999999 99999999999999999999999 888885 34554321
Q ss_pred ------CCccccccCCCCCCcc---chHHHHHHhhhcccccccc--------ccccccccccccccccccCceEEEeehh
Q 014617 105 ------SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKAVQVP--------IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ------~~~ig~vfq~p~l~~~---~tv~enl~~l~~~~~i~~p--------~~~~~~~~~~~~~~~~~~~qrVlIaegl 167 (421)
+..+++++|+...++. .++.+++........+..- ..+......++ ...|||.||+++
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSg-----GekQRv~iAraL 173 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSG-----GELQRVAIAAAL 173 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCH-----HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCH-----HHHHHHHHHHHH
Confidence 1245677776543322 2677776532111111000 00111111122 234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014617 168 YALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
..+|.++++||||++||+....+ ++++++++|.|+ ++.+.++||++++|.++
T Consensus 174 -----~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 174 -----LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -----HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred -----hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999997655 456776678888 78899999999999753
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=4.2e-20 Score=197.81 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=120.8
Q ss_pred eeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE---------EECCeecC-----
Q 014617 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (421)
Q Consensus 41 ~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I---------~~Dg~~~~----- 104 (421)
+++++.||.. .+|+++| .+++|+ ++||+||||||||||+++|+|++ |+.|.+ .++|....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 5788899876 5999999 999999 99999999999999999999999 888885 34554321
Q ss_pred ----CCccccccCCCCCCc---cchHHHHHHhhhcccccccc--------ccccccccccccccccccCceEEEeehhhh
Q 014617 105 ----SRIIDGNFDDPRLTD---YDTLLENIRGLKEGKAVQVP--------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ----~~~ig~vfq~p~l~~---~~tv~enl~~l~~~~~i~~p--------~~~~~~~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
+..+++.+|.....+ ..++.+++........+..- ..+......++ ...|||.||+++
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSG-----GekQRvaIAraL-- 243 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG-----GELQRVAIAAAL-- 243 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCH-----HHHHHHHHHHHH--
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCH-----HHHHHHHHHHHH--
Confidence 123566676543222 13788887532111111000 00111111122 234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014617 170 LSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
..+|.++++||||++||+....+ +++++.++|.|+ ++.+..+||++++|+++
T Consensus 244 ---~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 244 ---LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp ---HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ---hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999997554 457776668888 78889999999999754
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-19 Score=192.71 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=127.9
Q ss_pred eeeEEEeCc-EEEEeeeeeEEecC-----CceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccC
Q 014617 41 DTLSFEKGF-FIVIRACQLLAQKN-----HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (421)
Q Consensus 41 ~~ls~~~g~-~~~L~~Vsl~i~~G-----e~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq 113 (421)
.++++.|+. ..++++++|++.+| | ++||+||||||||||+++|+|++ |++|.. ..+..+++++|
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GE---iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q 420 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSE---ILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQ 420 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTC---EEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECS
T ss_pred cceeEEecCcccccCceEEEEecCccccce---EEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecc
Confidence 445667754 56889999999998 7 89999999999999999999999 888862 33456899999
Q ss_pred CCCCCccchHHHHHHhhhcccccccc-------------ccccccccccccccccccCceEEEeehhhhhhhccCCccce
Q 014617 114 DPRLTDYDTLLENIRGLKEGKAVQVP-------------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p-------------~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
++......++.+++.....+...... ..+......++ ...|||.||+++ ..+|.+++
T Consensus 421 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSG-----GqkQRv~iAraL-----~~~p~lLl 490 (608)
T 3j16_B 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSG-----GELQRVAIVLAL-----GIPADIYL 490 (608)
T ss_dssp SCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCH-----HHHHHHHHHHHT-----TSCCSEEE
T ss_pred cccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCH-----HHHHHHHHHHHH-----HhCCCEEE
Confidence 98766667888887542211100000 00001111111 234999999999 99999999
Q ss_pred EEEEecCccHHHHHH---HHHHHH-HcCCCH------HHHHHHHhceEEEccC--cEEeecCCcccE
Q 014617 181 RVSVTGGVHFDLVKR---VFRDIQ-RVGQEP------EEIIHQISETVYPMYK--AFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rr---Ilrdl~-~~G~ti------~~vi~~~~d~V~~m~~--g~I~p~~~~aDi 235 (421)
+||||++||+..... +++++. +.|.|+ ++.+..+|||+++|++ |.+...+...++
T Consensus 491 LDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp ECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999987654 456665 458888 8889999999999986 666665555444
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.76 E-value=9.1e-20 Score=202.94 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=124.8
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC
Q 014617 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
.+++++.|++ +.+|+++||++++|+ ++||+||||||||||+|+|+|++ |++|.|.+++. ..++|++|++.
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----~~I~yv~Q~~~ 746 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----CRIAYIKQHAF 746 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----CCEEEECHHHH
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----cceEeeccchh
Confidence 5678888864 679999999999999 99999999999999999999999 99999999862 24666666542
Q ss_pred C----CccchHHHHHHhhh-ccccc-------------------------------------------------------
Q 014617 117 L----TDYDTLLENIRGLK-EGKAV------------------------------------------------------- 136 (421)
Q Consensus 117 l----~~~~tv~enl~~l~-~~~~i------------------------------------------------------- 136 (421)
. ....|+.+++.... .+...
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 1 11124444443210 00000
Q ss_pred -----------------ccccc-------------------------c------ccccccccc-----------cccccc
Q 014617 137 -----------------QVPIY-------------------------D------FKSSSRIGY-----------RTLEVP 157 (421)
Q Consensus 137 -----------------~~p~~-------------------------~------~~~~~~~~~-----------~~~~~~ 157 (421)
..+.. . .......+. ......
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000 0 000000010 001112
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014617 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
.||+.|++++ ..+|.++++||||++||+.....+.+.+.+.|.|+ ++.+..+||++++|.+|++...+
T Consensus 907 kQRVaLArAL-----~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G 980 (986)
T 2iw3_A 907 KVKLVLAAGT-----WQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980 (986)
T ss_dssp HHHHHHHHHH-----TTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred HHHHHHHHHH-----HhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 3899999999 89999999999999999999888888887767677 78888999999999999886554
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.76 E-value=7.1e-19 Score=195.79 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=130.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-CCccccccCCC-C
Q 014617 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-R 116 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-~~~ig~vfq~p-~ 116 (421)
...++++.||.+.+|+++||++++|+ ++||+||||||||||+|+|+| |.| +|.... ...++|++|++ .
T Consensus 437 ~~~~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~~~~~~v~q~~~~ 506 (986)
T 2iw3_A 437 CNCEFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEECRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTTSCEEETTCCCCC
T ss_pred EEeeEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccceeEEEEcccccc
Confidence 34488999999999999999999999 999999999999999999996 222 343322 22367888875 5
Q ss_pred CCccchHHHHHHhhhccc--cccc--cccccc--cccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014617 117 LTDYDTLLENIRGLKEGK--AVQV--PIYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~--~i~~--p~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
+++..|+.+++.....+. .+.. ....+. ...+...+......||+.|++++ ..+|.++++||||++||+
T Consensus 507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL-----~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV-----LRNADILLLDEPTNHLDT 581 (986)
T ss_dssp CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH-----HTTCSEEEEESTTTTCCH
T ss_pred cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH-----hcCCCEEEEECCccCCCH
Confidence 677789999987511010 0000 000100 00000001111234999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEe-ecCCcccE
Q 014617 191 DLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTAHI 235 (421)
Q Consensus 191 ~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~-p~~~~aDi 235 (421)
.....+.+-+.+.|.|+ ++.+..+||++++|.+|++. ..+...++
T Consensus 582 ~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 582 VNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 99888877666677777 78899999999999999985 35555444
No 56
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.75 E-value=1.8e-20 Score=186.00 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=158.6
Q ss_pred eeeeeeeEEEeCcEEEEeeeeeEEecC---CceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecCCCc
Q 014617 37 VPIEDTLSFEKGFFIVIRACQLLAQKN---HGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSRI 107 (421)
Q Consensus 37 ~~v~~~ls~~~g~~~~L~~Vsl~i~~G---e~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~~~~ 107 (421)
.|+.+.+++.|+...++++++..+.++ .+|+++||+||||||||||+++|++++ | ..+.+.+|+++.....
T Consensus 60 ~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~ 139 (321)
T 3tqc_A 60 LPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK 139 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhh
Confidence 367777778888888888888877665 358999999999999999999999986 2 3667899998754221
Q ss_pred -----cccccCCCCCCccchHHHHHHhhhccc-cccccccccccccccccccccccCceEEEeehhhhhhhc--------
Q 014617 108 -----IDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-------- 173 (421)
Q Consensus 108 -----ig~vfq~p~l~~~~tv~enl~~l~~~~-~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~-------- 173 (421)
....+++|..++...+.+.+..++.+. .+..|.|++..+.+...........+++|+||++++.+.
T Consensus 140 l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~ 219 (321)
T 3tqc_A 140 LEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQL 219 (321)
T ss_dssp HHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSC
T ss_pred hhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccch
Confidence 112356688888888888888888887 788999999988876545555677899999999999865
Q ss_pred ---cCCccceEEEEecCccHHHHHHHHHHHHHcCCCH--------------HHHHHHHhce-----EEEccCcEEeecCC
Q 014617 174 ---LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP--------------EEIIHQISET-----VYPMYKAFIEPDLQ 231 (421)
Q Consensus 174 ---l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti--------------~~vi~~~~d~-----V~~m~~g~I~p~~~ 231 (421)
+.+.+|...+++++.|.+..|.+.|+...+|.+. .+.+...++. ..+....+|.|++.
T Consensus 220 ~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~ 299 (321)
T 3tqc_A 220 QVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKN 299 (321)
T ss_dssp CCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGG
T ss_pred hhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCcc
Confidence 7788999999999999999999999988765221 2222223333 34667788999999
Q ss_pred cccEEEeCCC
Q 014617 232 TAHIKIINKF 241 (421)
Q Consensus 232 ~aDiiI~~~~ 241 (421)
.||+|++.+.
T Consensus 300 ~Adlil~~g~ 309 (321)
T 3tqc_A 300 RAQLILEKAA 309 (321)
T ss_dssp GCSEEEEECT
T ss_pred CceEEEecCC
Confidence 9999997544
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=1.7e-19 Score=195.17 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=108.1
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHH---------------------HHHHhcC-CC-------eeEEEEC
Q 014617 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PS-------IAVITMD 99 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~---------------------r~L~gll-p~-------~G~I~~D 99 (421)
...+|++|||++++|+ ++||+||||||||||+ +.+.++. |+ .+.+.++
T Consensus 30 ~~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~ 106 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISID 106 (670)
T ss_dssp CSTTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEES
T ss_pred CccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEec
Confidence 3568999999999999 9999999999999998 7888877 76 4566676
Q ss_pred CeecC---CCccccccCCCCCC-------------------ccchHHHHHHhhhcc--ccccccc-----cc----cccc
Q 014617 100 NYNDS---SRIIDGNFDDPRLT-------------------DYDTLLENIRGLKEG--KAVQVPI-----YD----FKSS 146 (421)
Q Consensus 100 g~~~~---~~~ig~vfq~p~l~-------------------~~~tv~enl~~l~~~--~~i~~p~-----~~----~~~~ 146 (421)
+.... ++.+++++|.+.++ ..+++.+|+.+.... ....... .. ....
T Consensus 107 ~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 107 QKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp SCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred CchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 65432 35678887765442 345777887653210 0000000 00 0000
Q ss_pred cccc----------cccccccCceEEEeehhhhhhhccCCc--cceEEEEecCccHHHHHHH---HHHHHHcCCCH----
Q 014617 147 SRIG----------YRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP---- 207 (421)
Q Consensus 147 ~~~~----------~~~~~~~~qrVlIaegl~~L~d~l~p~--ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti---- 207 (421)
...+ .+......|||.||+++ ..+|. ++++||||++||+....++ +++++++|.|+
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL-----~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQI-----GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHH-----HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHH-----hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 0011 01111234999999999 77777 9999999999999876554 47777778888
Q ss_pred --HHHHHHHhceEEEc------cCcEEeecCCcccE
Q 014617 208 --EEIIHQISETVYPM------YKAFIEPDLQTAHI 235 (421)
Q Consensus 208 --~~vi~~~~d~V~~m------~~g~I~p~~~~aDi 235 (421)
++++. .||++++| ++|++...+..+++
T Consensus 262 Hd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 262 HDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp CCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCHHHHh-hCCEEEEecccccccCCEEEEecCHHHH
Confidence 66655 59999999 89999888777665
No 58
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.72 E-value=1.1e-18 Score=171.92 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=134.3
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEE---CCeecC---CCccccccCCCCCCccchHHHHHHhhh
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITM---DNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLK 131 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I~~---Dg~~~~---~~~ig~vfq~p~l~~~~tv~enl~~l~ 131 (421)
.+|+ ++||+|+||||||||+++|++++ |+.|.|.+ ||++.. .+.++++ |++.+++..++.+++..+.
T Consensus 78 ~~g~---iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 78 RIPY---IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp CCCE---EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred CCCE---EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 7778 99999999999999999999975 67888888 998753 2346777 8887777888888887653
Q ss_pred ---cccc-ccccccccccccccccccccccCceEEEeehhhhhhh-----------ccCCccceEEEEecCccHHHHHHH
Q 014617 132 ---EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----------KLRPLIDLRVSVTGGVHFDLVKRV 196 (421)
Q Consensus 132 ---~~~~-i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-----------~l~p~ldL~DEpts~LD~~~~rrI 196 (421)
.+.. +..|.+++..+.+...........+++|+||.+++.+ .+.+.+|..++++++.|.+..|.+
T Consensus 154 ~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~ 233 (308)
T 1sq5_A 154 DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYI 233 (308)
T ss_dssp HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHH
T ss_pred HHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 3344 6678888877666543333344568999999999876 567789999999999888777776
Q ss_pred HHHHHH---------------cCCCHHHH----HHHHhceEEEccCcEEeecCCcccEEEeCCCC
Q 014617 197 FRDIQR---------------VGQEPEEI----IHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 197 lrdl~~---------------~G~ti~~v----i~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
.|+... +|.|..++ ..+|.+.+.+++..+|.|.+..||++|.++.+
T Consensus 234 ~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 234 NRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 676532 37777543 34455566778888889999999999976643
No 59
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=1.1e-17 Score=154.82 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=127.6
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecCCC---ccccc--cCCCCCCccchHHHHHHhhh
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLK 131 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p---~~G~I~~Dg~~~~~~---~ig~v--fq~p~l~~~~tv~enl~~l~ 131 (421)
++|+ ++||+||||||||||+++|++++ | ..|.|.+||++.... .++.. ...+..++...+.+.+..+.
T Consensus 20 ~~g~---~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 20 PGRQ---LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CSCE---EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 6788 99999999999999999999998 4 489999999876421 11111 12233444444555666666
Q ss_pred ccccccccccccccccccccccccccCc-eEEEeehhhhhhh-----ccCCccceEEEEecCccHHHHHHHHHHHHHcCC
Q 014617 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (421)
Q Consensus 132 ~~~~i~~p~~~~~~~~~~~~~~~~~~~q-rVlIaegl~~L~d-----~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ 205 (421)
.+..+..|.+++...... ++.+.+... +++|++|.+++.| .+.+.+|...+++++.+.+.. |++++..++|+
T Consensus 97 ~~~~i~~p~~d~~~~~~~-g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~-R~~~R~~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAI-AGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEA-RLVQRWLDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEEE-EEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHH-HHHHHHHHTTC
T ss_pred cCCceecccCCccccCCC-CCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHhcCC
Confidence 666677778877665433 344556665 8999999988765 347889999999998776654 44544567799
Q ss_pred CHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014617 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 206 ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
+..++.+++..+..+++ .++.|.+..||++|+
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 99999999987788877 789999999999985
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.67 E-value=7.3e-18 Score=182.46 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=60.3
Q ss_pred CceEEEeehhhhhhhccCC---ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc----
Q 014617 158 SSRIVIIEGIYALSEKLRP---LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p---~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.|||.||+++ ..+| .++++||||++||+....++ +++++++|.|+ ++++ .+||++++|
T Consensus 549 ~qrv~iAraL-----~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~ 622 (670)
T 3ux8_A 549 AQRVKLAAEL-----HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEG 622 (670)
T ss_dssp HHHHHHHHHH-----HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSS
T ss_pred HHHHHHHHHH-----hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCc
Confidence 4999999999 6554 69999999999999876654 47777779888 6666 569999999
Q ss_pred --cCcEEeecCCcccE
Q 014617 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
++|+|...+..+++
T Consensus 623 g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 623 GDRGGQIVAVGTPEEV 638 (670)
T ss_dssp GGGCCEEEEEECHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 89999999888777
No 61
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.65 E-value=9.1e-17 Score=148.08 Aligned_cols=178 Identities=31% Similarity=0.517 Sum_probs=127.4
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC------CccccccCCCCCCccchHHHHHHhhhcc
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEG 133 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~------~~ig~vfq~p~l~~~~tv~enl~~l~~~ 133 (421)
++|+ ++||+||||||||||+++|++++ |..+.+..|.+.... ....+.++.+..++...+.+.+..+...
T Consensus 4 ~~~~---~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 4 PKPF---VIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp -CCE---EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCcE---EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 5677 99999999999999999999998 557777777654311 1123344444445545555656554444
Q ss_pred ccccccccccccccccccccccccCceEEEeehhhhhhhc-cCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 014617 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (421)
Q Consensus 134 ~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~-l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~ 212 (421)
..+..|.+++..+.+.. +.+.+...++++.++.+++.|+ ....+|...+.+.+.+.+..+.+.|+..++|.|+..+.+
T Consensus 81 ~~~~~~~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 81 LPVEMPVYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CCEEECCEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCcCCCcccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555666655544332 2334556789999999888764 456678888888887777777777777778999988888
Q ss_pred HHhceEEEccCcEEeecCCcccEEEeCCCC
Q 014617 213 QISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 213 ~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
++..++.++++.++.|....||++|.++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 160 QYLEQVKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHHHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred HHHHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence 888888888888889999999999976553
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.9e-19 Score=182.24 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=114.5
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee-E-EEECCeecCCCccccccCCCCC---CccchHHHHHH
Q 014617 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRIIDGNFDDPRL---TDYDTLLENIR 128 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~-I~~Dg~~~~~~~ig~vfq~p~l---~~~~tv~enl~ 128 (421)
+++|++++|+ +++|+||||||||||+|+|+|++ |+.| . |.+||. .++.++++||++.+ .+..++.+|+
T Consensus 130 ~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--~~~~i~~vpq~~~l~~~~~~~tv~eni- 203 (460)
T 2npi_A 130 KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--PQQPIFTVPGCISATPISDILDAQLPT- 203 (460)
T ss_dssp HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--TTSCSSSCSSCCEEEECCSCCCTTCTT-
T ss_pred cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--ccCCeeeeccchhhcccccccchhhhh-
Confidence 6999999999 99999999999999999999999 8999 8 999982 36679999999854 3345777777
Q ss_pred hhhc---ccccccccccccccccccc-------ccccccCceEEEeeh--hhhhhhccCCcc----ceEEE-EecCccHH
Q 014617 129 GLKE---GKAVQVPIYDFKSSSRIGY-------RTLEVPSSRIVIIEG--IYALSEKLRPLI----DLRVS-VTGGVHFD 191 (421)
Q Consensus 129 ~l~~---~~~i~~p~~~~~~~~~~~~-------~~~~~~~qrVlIaeg--l~~L~d~l~p~l----dL~DE-pts~LD~~ 191 (421)
+... +........ ......+. +......||+.++++ + ..+|.+ +++|| |++++|+.
T Consensus 204 ~~~~~~~~~~~~~~~~--~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL-----~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 204 WGQSLTSGATLLHNKQ--PMVKNFGLERINENKDLYLECISQLGQVVGQRL-----HLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp CSCBCBSSCCSSCCBC--CEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHH-----HHCHHHHHSCEEEECCCGGGSCSS
T ss_pred cccccccCcchHHHHH--HHHHHhCCCcccchhhhhHHHHHHHHHHHHHHh-----ccCcccCcceEEEeCCcccccChh
Confidence 4221 100000000 00111111 111123489999999 8 889999 99999 99999998
Q ss_pred HHHHHHHHHH-HcCCCH------HH------HHHHHhce-----EEEcc-CcEEeecCCc
Q 014617 192 LVKRVFRDIQ-RVGQEP------EE------IIHQISET-----VYPMY-KAFIEPDLQT 232 (421)
Q Consensus 192 ~~rrIlrdl~-~~G~ti------~~------vi~~~~d~-----V~~m~-~g~I~p~~~~ 232 (421)
++.++++. +.|.|+ .+ .+.++||+ +++|. +|.+. .+..
T Consensus 277 --~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 277 --LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp --CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred --HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 44454443 347665 33 67789999 99998 88876 5443
No 63
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=1.2e-16 Score=151.81 Aligned_cols=182 Identities=27% Similarity=0.431 Sum_probs=104.4
Q ss_pred eCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCccchHHHH
Q 014617 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 47 ~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~en 126 (421)
-|.+.+|+++||++++|+ ++||+||||||||||+++|++++. .+.++ ..++.+++++|+. ++...++.++
T Consensus 9 ~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG---~~~~~---~~~~~i~~v~~d~-~~~~l~~~~~ 78 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLG---QNEVE---QRQRKVVILSQDR-FYKVLTAEQK 78 (245)
T ss_dssp --------------CCSE---EEEEECSTTSSHHHHHHHHHHHHT---GGGSC---GGGCSEEEEEGGG-GBCCCCHHHH
T ss_pred CCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhc---hhccc---ccCCceEEEeCCc-CccccCHhHh
Confidence 466789999999999999 999999999999999999999762 11111 0122334444432 2222333333
Q ss_pred HHh------------------------hhccccccccccccccccccccccccccCceEEEeehhhhhh-hccCCccceE
Q 014617 127 IRG------------------------LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLR 181 (421)
Q Consensus 127 l~~------------------------l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~ 181 (421)
+.. +........+.++.....+... .......+++|+++++++. ..+....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~ 157 (245)
T 2jeo_A 79 AKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLR 157 (245)
T ss_dssp HHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEE
T ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeE
Confidence 322 2111111112222222222221 1122346789999987664 3455557888
Q ss_pred EEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeCC
Q 014617 182 VSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~ 240 (421)
...++..+.+..+++.|++ ++|.+..++..+|..++.+.++.++.|.+..||++|++.
T Consensus 158 i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 158 LFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp EEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred EEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 9999987777777777776 669999999999988888888888889999999998643
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.9e-17 Score=175.75 Aligned_cols=170 Identities=10% Similarity=0.050 Sum_probs=107.4
Q ss_pred eeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------ECCeecC---
Q 014617 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDS--- 104 (421)
Q Consensus 41 ~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~-----------~Dg~~~~--- 104 (421)
+++++.|+.. ..+++++ .+++|+ ++||+||||||||||+|+|+|++ |+.|.|. ++|....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 4678888753 4667666 589999 99999999999999999999999 9999873 2221110
Q ss_pred ----CCccc--cccCCCCCC------ccchHHHHHHhhhcc--ccccc--------cccccccccccccccccccCceEE
Q 014617 105 ----SRIID--GNFDDPRLT------DYDTLLENIRGLKEG--KAVQV--------PIYDFKSSSRIGYRTLEVPSSRIV 162 (421)
Q Consensus 105 ----~~~ig--~vfq~p~l~------~~~tv~enl~~l~~~--~~i~~--------p~~~~~~~~~~~~~~~~~~~qrVl 162 (421)
...+. +.+|....+ ...++.+++...... ..+.. ...+......++ ...||+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg-----Ge~Qrv~ 231 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSG-----GELQRFA 231 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCH-----HHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCH-----HHHHHHH
Confidence 00011 111111100 111333333221100 00000 000111111122 2349999
Q ss_pred EeehhhhhhhccCCccceEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014617 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 163 Iaegl~~L~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
||+++ ..+|.++++||||++||+....+ ++++++++|.|+ ++.+..+||++.+|+++
T Consensus 232 iAraL-----~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 232 IGMSC-----VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHH-----HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHH-----HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999 99999999999999999987654 456666668887 88899999999999765
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.60 E-value=6.7e-17 Score=170.80 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=98.4
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE-----------EECCeecC---------CCc----cccccCCC
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS---------SRI----IDGNFDDP 115 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I-----------~~Dg~~~~---------~~~----ig~vfq~p 115 (421)
++|+ ++||+||||||||||+|+|+|++ |+.|.| .++|.... ... +.++.+.+
T Consensus 23 ~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 6899 99999999999999999999999 999988 45554321 011 22222222
Q ss_pred CCCccchHHHHHHhhhccccccc--------cccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecC
Q 014617 116 RLTDYDTLLENIRGLKEGKAVQV--------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~--------p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~ 187 (421)
.++. .++.+++........... ...+......++ ...|||.||+++ ..+|.++++||||++
T Consensus 100 ~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSg-----Ge~Qrv~iA~aL-----~~~p~illlDEPts~ 168 (538)
T 3ozx_A 100 KFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSG-----GGLQRLLVAASL-----LREADVYIFDQPSSY 168 (538)
T ss_dssp TTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCH-----HHHHHHHHHHHH-----HSCCSEEEEESTTTT
T ss_pred hhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCH-----HHHHHHHHHHHH-----HcCCCEEEEECCccc
Confidence 2222 356655543211111000 000111111222 234999999999 999999999999999
Q ss_pred ccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014617 188 VHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 188 LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
||+....++ ++++++ |.|+ ++.+..+||++.+|+++
T Consensus 169 LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp CCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999876554 456544 8887 78899999999999764
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.58 E-value=7.4e-16 Score=152.30 Aligned_cols=212 Identities=17% Similarity=0.166 Sum_probs=127.0
Q ss_pred eeeeecCcceecCeeeeeeeEEE----------eCcEEEEeeeeeE-EecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C
Q 014617 24 QLVKKKDSDRYEIVPIEDTLSFE----------KGFFIVIRACQLL-AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P 91 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~v~~~ls~~----------~g~~~~L~~Vsl~-i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p 91 (421)
++..++.++.|. ++.+.+++. ++.+..+ +++.. +++|+ ++||+||||||||||+++|+|++ |
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~---ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGE-PQQNPDRPVPF---IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCSSSCCCE---EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcc-cccccCCCCCE---EEEEECCCCchHHHHHHHHHhhccc
Confidence 455666677773 455544443 1112222 34443 78888 99999999999999999999998 6
Q ss_pred C-----eeEEEECCeecCC---Cccccc--cCCCCCCccchHHHHHHhhhcccc-ccccccccccccccccccccccCce
Q 014617 92 S-----IAVITMDNYNDSS---RIIDGN--FDDPRLTDYDTLLENIRGLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSR 160 (421)
Q Consensus 92 ~-----~G~I~~Dg~~~~~---~~ig~v--fq~p~l~~~~tv~enl~~l~~~~~-i~~p~~~~~~~~~~~~~~~~~~~qr 160 (421)
. .+.|.+|++.... ..+++. +..|..++...+.+.+..+..+.. ...+.++....+++......+...+
T Consensus 117 ~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 117 WDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp STTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred cCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence 4 3344444443221 001110 111222222233333333322211 2233444443334332223345578
Q ss_pred EEEeehhhhhh----hccCCccceEEEEecCccHHHHHHHHHHHHH---------------cCCCHHHHH----HHHhce
Q 014617 161 IVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEEII----HQISET 217 (421)
Q Consensus 161 VlIaegl~~L~----d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~---------------~G~ti~~vi----~~~~d~ 217 (421)
++|+++.+++. ..+...+|..++++++.+....|.+.|.+.. .|.+-.++. .+|...
T Consensus 197 ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~ 276 (312)
T 3aez_A 197 ILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTI 276 (312)
T ss_dssp EEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHT
T ss_pred EEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHhc
Confidence 99999998886 3677788999999998877776766666542 256664444 445566
Q ss_pred EEEccCcEEeecCCcccEEEeCCC
Q 014617 218 VYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 218 V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
+.+++..+|.|.+..||++|+++.
T Consensus 277 ~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 277 NRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHTTGGGGGGCSEEEEECT
T ss_pred cHHHHHHhccCCCCCCeEEEecCC
Confidence 778888999999999999997654
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.54 E-value=5.1e-16 Score=152.78 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=113.6
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------------CccccccCCCC-
Q 014617 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR- 116 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------------~~ig~vfq~p~- 116 (421)
++..++|.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|.+..+ ..+++++|++.
T Consensus 89 ~~~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 89 SKTELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CCCSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 3457888899999 99999999999999999999999 889999999876532 24789999998
Q ss_pred CCccchHHHHHHhhhccccccccccccccc-cccccccccccCceEEEeehhhhhhhccCCc--cceEEEEecCccHHHH
Q 014617 117 LTDYDTLLENIRGLKEGKAVQVPIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLV 193 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~--ldL~DEpts~LD~~~~ 193 (421)
+++..++.+++....... ......+..-. .........++.||+.|++++ ...|. ++++| ||+++|+...
T Consensus 166 ~~~~~~v~e~l~~~~~~~-~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral-----~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEG-YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIV-----SGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp CCHHHHHHHHHHHHHHTT-CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTS-----TTCCSEEEEEEE-GGGGGGGHHH
T ss_pred cCHHHHHHHHHHHHHHcC-CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhh-----ccCCCeeEEEEe-CCCCcCHHHH
Confidence 888889999998643211 11111111000 000001112346888999998 88899 99999 9999998754
Q ss_pred HHHHHHHHH-cCCCH---------------HHHHHHHhceEEEccCcEE
Q 014617 194 KRVFRDIQR-VGQEP---------------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 194 rrIlrdl~~-~G~ti---------------~~vi~~~~d~V~~m~~g~I 226 (421)
. +++++ .|.|+ .+++..+...+..+..|..
T Consensus 239 ~---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 A---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp H---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred H---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 3 44443 36554 5677777778888877743
No 68
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.48 E-value=1.7e-15 Score=151.71 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=111.6
Q ss_pred eEEEECCeecCCCc---------cccccCCCCCCccchHHHHHHhhhcc-----------------------------cc
Q 014617 94 AVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------KA 135 (421)
Q Consensus 94 G~I~~Dg~~~~~~~---------ig~vfq~p~l~~~~tv~enl~~l~~~-----------------------------~~ 135 (421)
..|.||||+..+.. .-..+.+|..||...+.+.+..++.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 46789999876432 23456788889988887777776554 45
Q ss_pred ccccccccccccccccccccccCceEEEeehhhhhhh-----ccCCccc-----eEEEEecCccHHHHHHHHHHHHHcCC
Q 014617 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (421)
Q Consensus 136 i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-----~l~p~ld-----L~DEpts~LD~~~~rrIlrdl~~~G~ 205 (421)
+..|.|++...++........+..+++|+||+++|++ .++..+| +.++++++.|.+..|.+.|++ ++|.
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-QSGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-HTTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-ccCC
Confidence 6789999998887765444444579999999999886 3456788 899999998888877777777 4798
Q ss_pred --CHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014617 206 --EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 206 --ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
+.+++..++...+.++. .+|.|++..||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 99999999988888876 799999999999874
No 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=3.2e-15 Score=150.46 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=113.5
Q ss_pred eeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------------CccccccCCCC-CC
Q 014617 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (421)
Q Consensus 54 ~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------------~~ig~vfq~p~-l~ 118 (421)
..++|.+++|+ +++|+|+||||||||+++|++++ |+.|.|.++|.+..+ ..+++++|++. ++
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46888889999 99999999999999999999999 889999999876532 24789999998 88
Q ss_pred ccchHHHHHHhhhccccccccccccccc-cccccccccccCceEEEeehhhhhhhccCCc--cceEEEEecCccHHHHHH
Q 014617 119 DYDTLLENIRGLKEGKAVQVPIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPL--IDLRVSVTGGVHFDLVKR 195 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~~p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~--ldL~DEpts~LD~~~~rr 195 (421)
+..++.+++....... ......+..-. .........++.||+.|++++ ...|. ++++| ||+++|+....
T Consensus 225 p~~tv~e~l~~~~~~~-~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral-----~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG-YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIV-----SGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHHHTT-CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS-----TTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhhhHHHHHHHHHhCC-CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHH-----hcCCCceEEEEc-CCCCCCHHHHH-
Confidence 8889999998653211 11111111000 000001112346888889988 88899 99999 99999987543
Q ss_pred HHHHHHH-cCCCH---------------HHHHHHHhceEEEccCcE
Q 014617 196 VFRDIQR-VGQEP---------------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 196 Ilrdl~~-~G~ti---------------~~vi~~~~d~V~~m~~g~ 225 (421)
+.+++ .|.|+ ..++..+...+..+-.|.
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 34443 36554 567777777888887774
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.47 E-value=8.2e-15 Score=162.76 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=61.1
Q ss_pred CceEEEeehhhhhhhccC---CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc----
Q 014617 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~---p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.|||.||+++ ..+ |.++++||||++||+...++++ +++.++|.|+ ++++.. ||++++|
T Consensus 811 rQRV~LAraL-----~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~g 884 (916)
T 3pih_A 811 AQRIKLASEL-----RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEG 884 (916)
T ss_dssp HHHHHHHHHH-----TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSS
T ss_pred HHHHHHHHHH-----hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCC
Confidence 4999999999 544 5799999999999999776655 6666679888 777755 9999999
Q ss_pred --cCcEEeecCCcccEE
Q 014617 222 --YKAFIEPDLQTAHIK 236 (421)
Q Consensus 222 --~~g~I~p~~~~aDii 236 (421)
++|+|...+.++++.
T Consensus 885 g~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 885 GKEGGYIVATGTPEEIA 901 (916)
T ss_dssp GGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEEcCHHHHH
Confidence 999999999888874
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.46 E-value=1.2e-14 Score=160.25 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=59.5
Q ss_pred CceEEEeehhhhhhhccC---CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc----
Q 014617 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~---p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.||+.||+++ ..+ |.++++||||++||+....++ +++++++|.|+ ++++ .+||++++|
T Consensus 736 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 736 AQRIKLATEL-----RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp HHHHHHHHTT-----SSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred HHHHHHHHHH-----HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 4899999998 664 799999999999999876655 56777779888 7777 689999999
Q ss_pred --cCcEEeecCCcccE
Q 014617 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
++|+|...+...++
T Consensus 810 g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 810 GEDGGRLVAQGTPAEV 825 (842)
T ss_dssp GGGCCSEEEEECHHHH
T ss_pred CCCCCEEEEEcCHHHH
Confidence 78999877766665
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.45 E-value=1.9e-14 Score=159.59 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=58.3
Q ss_pred CceEEEeehhhhhhhccC---CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc----
Q 014617 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~---p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.||+.||+++ ..+ |.++++||||++||+.....+ ++++.++|.|+ ++++ .+||++++|
T Consensus 851 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~g 924 (972)
T 2r6f_A 851 AQRVKLAAEL-----HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEG 924 (972)
T ss_dssp HHHHHHHHHH-----SSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred HHHHHHHHHH-----hcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCC
Confidence 4899999998 654 599999999999999876655 46666778888 6766 579999999
Q ss_pred --cCcEEeecCCcccE
Q 014617 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
++|++...+...++
T Consensus 925 G~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 925 GDRGGQIVAVGTPEEV 940 (972)
T ss_dssp TTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 78999877766665
No 73
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.45 E-value=3e-14 Score=139.37 Aligned_cols=172 Identities=18% Similarity=0.301 Sum_probs=120.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEE-EECCeecCCC---cccc------c---cCCCCCCccchHHH
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVI-TMDNYNDSSR---IIDG------N---FDDPRLTDYDTLLE 125 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I-~~Dg~~~~~~---~ig~------v---fq~p~l~~~~tv~e 125 (421)
++.+|||+|+||||||||++.|.+++ +. .+.+ .+|+++.... .+.+ . +..|..++...+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~ 109 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 109 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHH
Confidence 45699999999999999999999998 42 4555 9999876531 1211 1 22477888777888
Q ss_pred HHHhhhcc------cccccccccccc----cccccc-ccccccCceEEEeehhhhhhhc---------------------
Q 014617 126 NIRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALSEK--------------------- 173 (421)
Q Consensus 126 nl~~l~~~------~~i~~p~~~~~~----~~~~~~-~~~~~~~qrVlIaegl~~L~d~--------------------- 173 (421)
.+..+..+ ..+..|.|++.. +++... ....+ +.+++|+||.++.++.
T Consensus 110 ~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~~ 188 (290)
T 1odf_A 110 VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAK 188 (290)
T ss_dssp HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHHH
T ss_pred HHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHHH
Confidence 88877766 456678888776 454432 12334 6889999999886542
Q ss_pred -------cCCccceE---EEEecCccHHHHH-HHHH--HH-HHc--CCCHHHHHHHHhceEEEccCcEEeec------CC
Q 014617 174 -------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEPD------LQ 231 (421)
Q Consensus 174 -------l~p~ldL~---DEpts~LD~~~~r-rIlr--dl-~~~--G~ti~~vi~~~~d~V~~m~~g~I~p~------~~ 231 (421)
+++.+|++ ++++++-+....+ |+.| ++ .++ |++.+++ .++.++++++|+.++.|. ..
T Consensus 189 l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~~~ 267 (290)
T 1odf_A 189 LFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESLGS 267 (290)
T ss_dssp HHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccCCC
Confidence 35557777 9999866666555 7777 53 345 8898884 788899999877666542 23
Q ss_pred cccEEEe
Q 014617 232 TAHIKII 238 (421)
Q Consensus 232 ~aDiiI~ 238 (421)
.||+++.
T Consensus 268 ~adlvl~ 274 (290)
T 1odf_A 268 IATLTLG 274 (290)
T ss_dssp SEEEEEE
T ss_pred CCCEEEE
Confidence 7888874
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.44 E-value=2e-16 Score=147.60 Aligned_cols=135 Identities=15% Similarity=0.104 Sum_probs=80.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee----cCCCccccccCCC--CCCccc
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSSRIIDGNFDDP--RLTDYD 121 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~----~~~~~ig~vfq~p--~l~~~~ 121 (421)
|.+.+|++| ++|+ ++||+||||||||||+++|+|+-|++|.|...... ..++.++|+||++ ++....
T Consensus 11 g~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~ 83 (208)
T 3b85_A 11 GQKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYL 83 (208)
T ss_dssp HHHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTT
T ss_pred hHHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHH
Confidence 445566665 8999 99999999999999999999994466766321111 1245699999987 110110
Q ss_pred -hHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHH
Q 014617 122 -TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (421)
Q Consensus 122 -tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl 200 (421)
...+.+.. ......... .... + ....||+.|++++ ..+|.++++||||++ ....+.++++++
T Consensus 84 ~~~~~~~~~----~~~~~~~~~--~l~~-g----lGq~qrv~lAraL-----~~~p~lllLDEPts~-~~~~l~~~l~~l 146 (208)
T 3b85_A 84 RPLHDALRD----MVEPEVIPK--LMEA-G----IVEVAPLAYMRGR-----TLNDAFVILDEAQNT-TPAQMKMFLTRL 146 (208)
T ss_dssp HHHHHHHTT----TSCTTHHHH--HHHT-T----SEEEEEGGGGTTC-----CBCSEEEEECSGGGC-CHHHHHHHHTTB
T ss_pred HHHHHHHHH----hccHHHHHH--HHHh-C----CchHHHHHHHHHH-----hcCCCEEEEeCCccc-cHHHHHHHHHHh
Confidence 11111110 000000000 0011 1 1456899999999 999999999999999 444455555554
Q ss_pred HHcCCCH
Q 014617 201 QRVGQEP 207 (421)
Q Consensus 201 ~~~G~ti 207 (421)
++|.|+
T Consensus 147 -~~g~ti 152 (208)
T 3b85_A 147 -GFGSKM 152 (208)
T ss_dssp -CTTCEE
T ss_pred -cCCCEE
Confidence 345443
No 75
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.43 E-value=3.4e-14 Score=158.01 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=58.3
Q ss_pred CceEEEeehhhhhhhccC---CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc----
Q 014617 158 SSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~---p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.||+.||+++ ..+ |.++++||||++||+....+++ +++.++|.|+ ++++ ..||++++|
T Consensus 869 kQRv~LAraL-----~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~g 942 (993)
T 2ygr_A 869 AQRVKLASEL-----QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEG 942 (993)
T ss_dssp HHHHHHHHHH-----SSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSS
T ss_pred HHHHHHHHHH-----HhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCc
Confidence 4899999998 654 5999999999999998766554 6666678888 6766 579999999
Q ss_pred --cCcEEeecCCcccE
Q 014617 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
++|++...+...++
T Consensus 943 g~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 943 GAGGGTVVAQGTPEDV 958 (993)
T ss_dssp TTSCSEEEEEECHHHH
T ss_pred CCCCCEEEEecCHHHH
Confidence 78999877766665
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.41 E-value=8.7e-14 Score=141.18 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=50.5
Q ss_pred CceEEEeehhhhhhhccCC--ccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEc----cC
Q 014617 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPM----YK 223 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m----~~ 223 (421)
.||+.|++++ ...| .++++||||++||+....++.+-+.+ +|.++ ++++ .+||++++| .+
T Consensus 301 ~qrl~lA~~l-----~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 301 LSRVMLAVST-----VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp HHHHHHHHHH-----HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred HHHHHHHHHH-----HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 4888888877 5566 99999999999999988877655443 46776 6665 579999999 78
Q ss_pred cEEee
Q 014617 224 AFIEP 228 (421)
Q Consensus 224 g~I~p 228 (421)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 87643
No 77
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.37 E-value=3.7e-14 Score=138.62 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=118.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC-CCc----------cc-cccCC--CCCCccchHHHHH
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SRI----------ID-GNFDD--PRLTDYDTLLENI 127 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~-~~~----------ig-~vfq~--p~l~~~~tv~enl 127 (421)
+.+|||.|++||||||+++.|...++ ....|..|+++.. ... .| ..+++ +..++...+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 45999999999999999999998652 3677888888642 111 11 24444 5566655556666
Q ss_pred Hhhhccccccccccccc-----ccccccccc---ccc-cCceEEEeehhhhh----hhccCCccceEEEEecCccHHHHH
Q 014617 128 RGLKEGKAVQVPIYDFK-----SSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLVK 194 (421)
Q Consensus 128 ~~l~~~~~i~~p~~~~~-----~~~~~~~~~---~~~-~~qrVlIaegl~~L----~d~l~p~ldL~DEpts~LD~~~~r 194 (421)
..+..+..+..|.+++. .+....... ... ....++|+||.+++ ...+.+.+|++++++++.+.+..|
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 65555555666666331 111111111 122 34679999999987 245678899999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 195 rIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++.|++.++|.+.++++.++..+ .+.+..++.|....||+
T Consensus 165 rl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 165 KIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 99899888899998888888888 77888889999999999
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.36 E-value=4.3e-14 Score=127.05 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=70.7
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCc-cchHHHHHHhhhcc
Q 014617 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTD-YDTLLENIRGLKEG 133 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~-~~tv~enl~~l~~~ 133 (421)
+|||++++|+ +++|+||||||||||++++.+-. ..+..| ...++++|++.... ..++.+.+......
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~~~---~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFKPT---EVISSD------FCRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSCGG---GEEEHH------HHHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHccCC---eEEccH------HHHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5899999999 99999999999999999854321 112111 12367777764321 22233333321100
Q ss_pred -cccc-ccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHH
Q 014617 134 -KAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (421)
Q Consensus 134 -~~i~-~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~ 193 (421)
.... ....+. ... ......||+.||+++ ..+|.++++|||++++|++..
T Consensus 69 ~~~~g~~~~~~~-~~~-----~s~g~~qrv~iAral-----~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 69 RLQLGKLTVVDA-TNV-----QESARKPLIEMAKDY-----HCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHHTTCCEEEES-CCC-----SHHHHHHHHHHHHHT-----TCEEEEEEECCCHHHHHHHHH
T ss_pred HHhCCCeEEEEC-CCC-----CHHHHHHHHHHHHHc-----CCcEEEEEEeCCHHHHHHHHh
Confidence 0000 001110 000 111235889999999 899999999999999999843
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.36 E-value=4.6e-15 Score=137.07 Aligned_cols=158 Identities=13% Similarity=-0.014 Sum_probs=84.8
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee----c---CCCccccccCCCCCCccc
Q 014617 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----D---SSRIIDGNFDDPRLTDYD 121 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~----~---~~~~ig~vfq~p~l~~~~ 121 (421)
...++++ +++++|+ ++||+||||||||||+++|+|++|. +.+++.. . .++.++|+||++..++..
T Consensus 8 ~~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 79 (207)
T 1znw_A 8 TKPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 79 (207)
T ss_dssp -------------CCC---EEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CCcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHH
Confidence 3456777 6899999 9999999999999999999999852 2233221 1 134589999998777666
Q ss_pred hHHHHHHhhhcccc--c--cccc-------ccc-cc---cccccccc-ccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014617 122 TLLENIRGLKEGKA--V--QVPI-------YDF-KS---SSRIGYRT-LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 122 tv~enl~~l~~~~~--i--~~p~-------~~~-~~---~~~~~~~~-~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
++.+++........ . ..+. ... .. .+..+... ....+..+. ++ ...|.++++|||+
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS---~l-----~~~p~~~~LDep~ 151 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT---VF-----LAPPSWQDLQARL 151 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE---EE-----EECSCHHHHHHHH
T ss_pred HhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE---EE-----EECCCHHHHHHHH
Confidence 66555432110000 0 0000 000 00 01111100 000011110 22 4567788899999
Q ss_pred cCc----cHHHHHH---HHHHHHH-cCCCH------HHHHHHHhceEEEcc
Q 014617 186 GGV----HFDLVKR---VFRDIQR-VGQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 186 s~L----D~~~~rr---Ilrdl~~-~G~ti------~~vi~~~~d~V~~m~ 222 (421)
+++ |+...++ +++++++ .|.|+ ++.+.++||++++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 987 5555444 4466764 48887 888999999998874
No 80
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.35 E-value=8.1e-16 Score=151.55 Aligned_cols=153 Identities=8% Similarity=0.057 Sum_probs=95.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCc
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~ 119 (421)
.++++|.|+ ..+|+++||++++|+ +++|+||||||||||+++|+|++ .|.|. .+++|.+.++.
T Consensus 104 ~~~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~-----------~~v~q~~~lf~ 166 (305)
T 2v9p_A 104 YQNIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVL-----------SFANHKSHFWL 166 (305)
T ss_dssp HTTCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEE-----------CGGGTTSGGGG
T ss_pred EEEEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEE-----------EEecCcccccc
Confidence 456777776 568999999999999 99999999999999999999998 67774 34455555443
Q ss_pred cchHHH-HHHhhhccc-c----cc--ccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014617 120 YDTLLE-NIRGLKEGK-A----VQ--VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 120 ~~tv~e-nl~~l~~~~-~----i~--~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
.++.+ |+.+..... . +. .|. .+.....++ ...|| ++++ ..+|.+++ |+++|+.
T Consensus 167 -~ti~~~ni~~~~~~~~~~~~~i~~~L~~-gldg~~LSg-----GqkQR---ARAl-----l~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 167 -ASLADTRAALVDDATHACWRYFDTYLRN-ALDGYPVSI-----DRKHK---AAVQ-----IKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp -GGGTTCSCEEEEEECHHHHHHHHHTTTG-GGGTCCEEC-----CCSSC---CCCE-----ECCCCEEE----EESSCST
T ss_pred -ccHHHHhhccCccccHHHHHHHHHHhHc-cCCccCcCH-----HHHHH---HHHH-----hCCCCEEE----ECCCCHH
Confidence 23433 443321000 0 00 000 000112222 23466 8888 78888888 9999998
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccE
Q 014617 192 LVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 192 ~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...++. .+..+ . . ...+||++ +|.+|++...+.+.++
T Consensus 228 ~~~~i~-~ltH~-~---~-~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 228 AEDRYL-YLHSR-V---Q-TFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TCGGGG-GGTTT-E---E-EEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHH-HHhCC-H---H-HHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 766654 22111 1 1 12478999 9999988766655444
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.33 E-value=1.7e-14 Score=134.80 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=43.5
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC--------CCccccccCCCCCCcc
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDY 120 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~--------~~~ig~vfq~p~l~~~ 120 (421)
...|++|||++++|+ +++|+||||||||||+++|+|++| |.|.+ |.... ++.++|+||++.+++.
T Consensus 10 ~~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 457899999999999 999999999999999999999986 88888 55331 2467899998765543
No 82
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.33 E-value=7.6e-13 Score=125.89 Aligned_cols=174 Identities=30% Similarity=0.548 Sum_probs=122.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC--C-------CeeEEEECCeecC--C-----Ccc-ccccCCCCCCccchHHHH
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--P-------SIAVITMDNYNDS--S-----RII-DGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll--p-------~~G~I~~Dg~~~~--~-----~~i-g~vfq~p~l~~~~tv~en 126 (421)
.++.+|||.|++||||||+++.|+..+ + ....+..|++... . ... .++|++|..++...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 346799999999999999999999866 2 2336777877531 1 112 357888888877777777
Q ss_pred HHhhhccccccccccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCC
Q 014617 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (421)
Q Consensus 127 l~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ 205 (421)
|..+..+..+..|.|++..+.+.. +........++|++|.+++. +.+...+++..+.+++.+....|...|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 777666666677777776654442 22223346789999988764 4555567899999998887776666677777788
Q ss_pred CHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014617 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 206 ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
+..++..++..++.+.+..++.|....||++|+
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 988887777766655455555566778999873
No 83
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.33 E-value=8.2e-15 Score=130.99 Aligned_cols=84 Identities=19% Similarity=0.070 Sum_probs=69.5
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC--CccccccCCCCCCc
Q 014617 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIIDGNFDDPRLTD 119 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~--~~ig~vfq~p~l~~ 119 (421)
++++.||...+++++||++++|+ +++|+||||||||||+|+|+|++|..|.|.++|+.+.. ..-.+++|++.++
T Consensus 12 ~~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~- 87 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY- 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT-
T ss_pred HHHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc-
Confidence 34455566678999999999999 99999999999999999999999989999999986531 1123789999888
Q ss_pred cchHHHHHHh
Q 014617 120 YDTLLENIRG 129 (421)
Q Consensus 120 ~~tv~enl~~ 129 (421)
..++.+++..
T Consensus 88 ~ltv~e~l~~ 97 (158)
T 1htw_A 88 RLADPEELEF 97 (158)
T ss_dssp TCSCTTHHHH
T ss_pred cCCcHHHHHH
Confidence 7888888865
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.32 E-value=3.1e-15 Score=153.10 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=88.8
Q ss_pred EEEEeeeeeEEecCC-----------------ceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccc
Q 014617 50 FIVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGN 111 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge-----------------~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~v 111 (421)
..+|++|++++++|+ .+.++||+|+||||||||+|+|+|+. |+.|.|.++|...+++ +++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v 113 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHP 113 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEe
Confidence 357899999999998 57799999999999999999999999 8999999998765432 778
Q ss_pred cCCCCCCccchHHHHHHhhhccccc-------cccccccccccccccccccccCceEEEeehhhhhhh-----ccCCccc
Q 014617 112 FDDPRLTDYDTLLENIRGLKEGKAV-------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i-------~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-----~l~p~ld 179 (421)
+|++ .++..++.+++........+ ....++.... .+++. ...||+.|++++..... ...|.++
T Consensus 114 ~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~---~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 114 YKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR---FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp EECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC---CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred cccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC---ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 8875 34444554444322110000 0000010000 11110 13466777777722110 1278899
Q ss_pred eEEEEecCccHHHHHHHH
Q 014617 180 LRVSVTGGVHFDLVKRVF 197 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl 197 (421)
++|||++++|+....+++
T Consensus 189 lLDEPtsgLD~~~~~~l~ 206 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVL 206 (413)
T ss_dssp HHHHHTTCCTTCCHHHHH
T ss_pred ccCcccccCCHHHHHHHH
Confidence 999999999998655544
No 85
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.31 E-value=1.2e-13 Score=127.05 Aligned_cols=168 Identities=17% Similarity=0.278 Sum_probs=89.7
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccc--cccCC-------CCCCccchHHHHH-Hh
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIID--GNFDD-------PRLTDYDTLLENI-RG 129 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig--~vfq~-------p~l~~~~tv~enl-~~ 129 (421)
.+|. ++||+|+||||||||+++|++.+ +..|.+.+.+.+....... ..+.. +..++...+.+.+ ..
T Consensus 20 ~~~~---~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~ 96 (201)
T 1rz3_A 20 AGRL---VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQ 96 (201)
T ss_dssp SSSE---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGG
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHH
Confidence 5566 99999999999999999999998 5566665543322111000 00000 1234444444444 22
Q ss_pred hhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHH
Q 014617 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (421)
Q Consensus 130 l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~ 209 (421)
+..+.....+.+++....... .........++|++|.+++.+...+.+|..++++++.+.+..|.+.|+ .+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~ 167 (201)
T 1rz3_A 97 LKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQ 167 (201)
T ss_dssp TTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------
T ss_pred HhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HH
Confidence 333334455566655222111 122334567999999998877777788999999999887766655555 22
Q ss_pred HHHHHhceEEEccCcEEeec--CCcccEEEeCC
Q 014617 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINK 240 (421)
Q Consensus 210 vi~~~~d~V~~m~~g~I~p~--~~~aDiiI~~~ 240 (421)
+..++.++..+.++.++.+. ...||++|.|+
T Consensus 168 ~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 168 NIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 33444344444444444333 46899998764
No 86
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.30 E-value=1.7e-13 Score=132.71 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccCCCCCCccchHHHHHHhhhccc--ccccc
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQVP 139 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~~p 139 (421)
+.+||+||||||||||+++|+|+. |++|.|.++|.+.. ++.+++++|++.++...|+.+++.+..... ....+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999998 99999999998653 356899999999888889888887643211 11111
Q ss_pred ccccccc---cccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHH
Q 014617 140 IYDFKSS---SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (421)
Q Consensus 140 ~~~~~~~---~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~ 201 (421)
..++... .....+......||+.+++++ .. +.++|+|+.++|+.. .++++.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal-----~~---lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVH-----CC---LYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCC-----EE---EEEECCCSSSCCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheee-----ee---eEEEecCCCcCCHHH-HHHHHHHH
Confidence 1111000 000111122234788888887 42 788999999999865 44445443
No 87
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.29 E-value=2.4e-14 Score=147.73 Aligned_cols=174 Identities=12% Similarity=0.075 Sum_probs=115.5
Q ss_pred eeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe---ecC-----------
Q 014617 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---NDS----------- 104 (421)
Q Consensus 41 ~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~---~~~----------- 104 (421)
+++++.|+ +..+|+++ |.+.+|+ ++||+||||||||||+++|+|+. |++|.|.++|. +..
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred eccceecCCCceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccc
Confidence 45666665 57799999 9999999 99999999999999999999999 99999999997 221
Q ss_pred -CCccccccCC-CCCCccchHHHHHHhhhccccc-cccccccccccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014617 105 -SRIIDGNFDD-PRLTDYDTLLENIRGLKEGKAV-QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 105 -~~~ig~vfq~-p~l~~~~tv~enl~~l~~~~~i-~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++++|+ ..++...++.+|+......... ......+ .+.. .......||+.++ ..+|.+
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~--ld~l--~~lS~g~qrvslA--------l~~p~~--- 275 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLI--MDSL--TRYAMAQREIALA--------IGEPPA--- 275 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEE--EECH--HHHHHHHHHHHHH--------TTCCCC---
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHhH--HHHHHHHHHHHHH--------hCCCcc---
Confidence 2457899985 5567778888888764321100 0000000 0000 0000111555444 223444
Q ss_pred EEEecCccHHHHHHHHHHHHH------c-CC-----CH----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 182 VSVTGGVHFDLVKRVFRDIQR------V-GQ-----EP----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl~~------~-G~-----ti----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++++|+.....+.+-+.+ + |. |+ .+.-..+||+++.+.+|++..++..+++.
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHcc
Confidence 899999987766654432 2 42 44 11116789999999999999888776653
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.24 E-value=1.6e-13 Score=136.59 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=89.3
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHh
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
.+++++++.+++|+ +++|+||||||||||+++|+|++ |+.|.|.++|..... ..++.+.
T Consensus 159 ~~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-----~~~~~~~------------ 218 (330)
T 2pt7_A 159 QAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-----FKHHKNY------------ 218 (330)
T ss_dssp HHHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-----CSSCSSE------------
T ss_pred HHHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-----cccchhE------------
Confidence 47899999999999 99999999999999999999999 899999998853110 0000000
Q ss_pred hhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH--
Q 014617 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-- 207 (421)
Q Consensus 130 l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti-- 207 (421)
+. +.. + ....||+.|++++ ..+|.++++|||++. ...++++.++..+.|+
T Consensus 219 ------i~-----~~~----g----gg~~~r~~la~aL-----~~~p~ilildE~~~~----e~~~~l~~~~~g~~tvi~ 270 (330)
T 2pt7_A 219 ------TQ-----LFF----G----GNITSADCLKSCL-----RMRPDRIILGELRSS----EAYDFYNVLCSGHKGTLT 270 (330)
T ss_dssp ------EE-----EEC----B----TTBCHHHHHHHHT-----TSCCSEEEECCCCST----HHHHHHHHHHTTCCCEEE
T ss_pred ------EE-----EEe----C----CChhHHHHHHHHh-----hhCCCEEEEcCCChH----HHHHHHHHHhcCCCEEEE
Confidence 00 000 0 1235788888988 889999999999983 2445667666444453
Q ss_pred ----HHHHHHHhceEEEccCc
Q 014617 208 ----EEIIHQISETVYPMYKA 224 (421)
Q Consensus 208 ----~~vi~~~~d~V~~m~~g 224 (421)
.+ +...||++..|.+|
T Consensus 271 t~H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 271 TLHAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp EEECSS-HHHHHHHHHHHHHT
T ss_pred EEcccH-HHHHhhhheehhcC
Confidence 34 56678888888665
No 89
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.22 E-value=4.1e-12 Score=136.08 Aligned_cols=144 Identities=12% Similarity=0.085 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeec----------CCCccccccCCCCCCccchHHHHHHhhhcccc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p-~~G~I~~Dg~~~----------~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~ 135 (421)
.+||+|+||||||||+++|+|+. | ++|.|.++|.++ .++.++++||++.+++..++.+++........
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 49999999999999999999998 8 799999999863 13468999999999999999999987532110
Q ss_pred ccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEE------ecCccHHHHHH---HHHHHHHcCCC
Q 014617 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV------TGGVHFDLVKR---VFRDIQRVGQE 206 (421)
Q Consensus 136 i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp------ts~LD~~~~rr---Ilrdl~~~G~t 206 (421)
.. ......+.+.+.... ...|.+.++||| ++++|+..... +++++..++.+
T Consensus 127 ~~---------------~~~~s~~~i~l~i~~-----~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~ 186 (608)
T 3szr_A 127 GE---------------GMGISHELITLEISS-----RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQET 186 (608)
T ss_dssp CS---------------SSCCCSCCEEEEEEE-----SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSC
T ss_pred CC---------------ccccchHHHHHHhcC-----CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 00 001112333333333 457889999999 99999876544 44554333333
Q ss_pred H----------------HHHHHHH----hceEEEccCcEEeecCC
Q 014617 207 P----------------EEIIHQI----SETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 207 i----------------~~vi~~~----~d~V~~m~~g~I~p~~~ 231 (421)
+ ..++.++ ...+.++.++-+...+.
T Consensus 187 iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 187 ISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp CEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSS
T ss_pred CceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCccc
Confidence 2 3344444 24566766665554444
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.17 E-value=5e-13 Score=140.60 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=56.3
Q ss_pred CcEEEEeeeee-EEecCCceeEEEEEcCCCCcHHHHHHH--HHhcC-CCeeEEEECCeecC------CCccccccCCCC
Q 014617 48 GFFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPR 116 (421)
Q Consensus 48 g~~~~L~~Vsl-~i~~Ge~~~IigIiGpSGSGKSTL~r~--L~gll-p~~G~I~~Dg~~~~------~~~ig~vfq~p~ 116 (421)
++..+|++|++ .+++|+ +++|+||||||||||+++ ++|++ |+.|.|.++|.+.. .+.+|++||++.
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CCchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 45678999999 999999 999999999999999999 78998 69999999987632 245788888753
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.16 E-value=2.6e-12 Score=116.72 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=77.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec-------CCCccccccCCCCCCccchHHHHHHhhhccccccccc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~-------~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~ 140 (421)
.++|+||||||||||+++|+|+++ +.++|+.. .++.+++++|++... +++ + .. .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~------~~~--~-~~--~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGK------KKI--F-SS--KFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCC------EEE--E-EE--TTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHH------HHH--H-Hh--hcCCc
Confidence 689999999999999999999983 33344321 235688888876211 111 0 00 00000
Q ss_pred cccccccccccccccccCceEEEeeh-----hhhhhhccCCccceEEE--EecCccHHHHHHHHHHHHHcCCCH------
Q 014617 141 YDFKSSSRIGYRTLEVPSSRIVIIEG-----IYALSEKLRPLIDLRVS--VTGGVHFDLVKRVFRDIQRVGQEP------ 207 (421)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~qrVlIaeg-----l~~L~d~l~p~ldL~DE--pts~LD~~~~rrIlrdl~~~G~ti------ 207 (421)
+ ...............||+.++++ + ..+|.+.++|| |++++|+.....+.+-+.+.+.|+
T Consensus 67 -~-~~~~~~~~~lSgG~~qr~~la~aa~~~~l-----~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 67 -K-KLVGSYGVNVQYFEELAIPILERAYREAK-----KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp -S-SEETTEEECHHHHHHHHHHHHHHHHHHHH-----HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred -c-ccccccccCcCHHHHHHHHHHhhcccccc-----ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 0 00000000111123478888886 7 78899999999 999999988777766665545423
Q ss_pred ---HHHHHHHhce
Q 014617 208 ---EEIIHQISET 217 (421)
Q Consensus 208 ---~~vi~~~~d~ 217 (421)
.+.+..+|++
T Consensus 140 ~h~~~~~~~i~~r 152 (178)
T 1ye8_A 140 RDVHPLVKEIRRL 152 (178)
T ss_dssp SCCSHHHHHHHTC
T ss_pred CCCchHHHHHHhc
Confidence 3566677766
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.14 E-value=3.1e-12 Score=118.22 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=49.4
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-------CeeEEEECCeec-CCCccccccCCCCCCccchHHHHHH
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYND-SSRIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-------~~G~I~~Dg~~~-~~~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
-+++|+ +++|+||||||||||+++|+++. + ..+.+.+++... ..+.+++++|...+.+. ++.+|+.
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 468999 99999999999999999999965 4 445888887653 23456777777766543 5666553
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.13 E-value=9.6e-12 Score=122.37 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=58.6
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------------CccccccCCCCCCccchHHHHH
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENI 127 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------------~~ig~vfq~p~l~~~~tv~enl 127 (421)
+|+ +++|+||||||||||+++|++++ |+.|.|.++|.+..+ ..+++++|++.+++..++.+++
T Consensus 101 ~g~---vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGR---VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSS---EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCe---EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 577 99999999999999999999999 999999999987532 2478999999999989999999
Q ss_pred Hhhh
Q 014617 128 RGLK 131 (421)
Q Consensus 128 ~~l~ 131 (421)
....
T Consensus 178 ~~~~ 181 (304)
T 1rj9_A 178 QAMK 181 (304)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.12 E-value=2e-12 Score=121.05 Aligned_cols=149 Identities=10% Similarity=0.086 Sum_probs=78.3
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHH--hcC-CCeeEEEECCeecC------CCccccccCCCCCCccchHHHHHHh
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~--gll-p~~G~I~~Dg~~~~------~~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
.+++|+ +++|+||||||||||+++|+ +++ +..+.+.+++.... .+.+++.+|++......++.++...
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 579999 99999999999999999999 764 56667776654321 1224444443211111111111100
Q ss_pred hhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc-----HHH---HHHHHHHHH
Q 014617 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH-----FDL---VKRVFRDIQ 201 (421)
Q Consensus 130 l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD-----~~~---~rrIlrdl~ 201 (421)
...... . ..+. ...... . .. +++.+........|.+.++|||++.+| +.. +.++++.++
T Consensus 103 ~~~~~~-~-~~~~--~~~~~~-----~--~~--~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 103 VVGLPS-E-EKFV--LEDRFN-----V--DN--FLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp -------------------CC-----H--HH--HHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred cccccc-c-ccee--ccCccc-----H--HH--HHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 000000 0 0000 000000 0 00 011111111246899999999999986 332 445667777
Q ss_pred HcCCCH------HHHH---------HHHh-ceEEEccC
Q 014617 202 RVGQEP------EEII---------HQIS-ETVYPMYK 223 (421)
Q Consensus 202 ~~G~ti------~~vi---------~~~~-d~V~~m~~ 223 (421)
++|.|+ .+.+ ..+| |+++.|..
T Consensus 170 ~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 170 EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 779888 3333 5788 99999864
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.12 E-value=1.6e-12 Score=125.20 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=85.1
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecCCCccccccCCCCCCccchHHHHHH
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
.+|++++ +++|+ +++|+||||||||||+++|+|++ |+ .|.|.++|.+ +++++|++..+-
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-----i~~~~~~~~~~v--------- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-----IEYVFKHKKSIV--------- 75 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-----CCSCCCCSSSEE---------
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-----ceeecCCcceee---------
Confidence 4788888 89999 99999999999999999999999 76 8999988754 344444331110
Q ss_pred hhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH-
Q 014617 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP- 207 (421)
Q Consensus 129 ~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti- 207 (421)
.. ...+... ..-++.|++++ ..+|.+.++|||+ |+...+.+++.. ..|.++
T Consensus 76 ---~q-------------~~~gl~~---~~l~~~la~aL-----~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl 127 (261)
T 2eyu_A 76 ---NQ-------------REVGEDT---KSFADALRAAL-----REDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 127 (261)
T ss_dssp ---EE-------------EEBTTTB---SCHHHHHHHHH-----HHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEE
T ss_pred ---eH-------------HHhCCCH---HHHHHHHHHHH-----hhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEE
Confidence 00 0011000 11156677777 7799999999999 788777776654 457665
Q ss_pred -----HHHHHHHhceEEEccC
Q 014617 208 -----EEIIHQISETVYPMYK 223 (421)
Q Consensus 208 -----~~vi~~~~d~V~~m~~ 223 (421)
.+ +..++|+++.|..
T Consensus 128 ~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 128 GTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp EEECCSS-HHHHHHHHHHTSC
T ss_pred EEeCcch-HHHHHHHHhhhcC
Confidence 23 3456676666543
No 96
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.08 E-value=3.5e-11 Score=121.07 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=53.2
Q ss_pred CceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEe
Q 014617 158 SSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 158 ~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~ 227 (421)
.||+.|++++.... -..+|.++++||||++||+.....++ +++++.|.|+ ++. ..+||++++|.+|++.
T Consensus 285 ~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 285 RALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred HHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 38888888883110 01589999999999999999877665 5555568887 665 6779999999999885
Q ss_pred e
Q 014617 228 P 228 (421)
Q Consensus 228 p 228 (421)
.
T Consensus 364 ~ 364 (365)
T 3qf7_A 364 N 364 (365)
T ss_dssp -
T ss_pred e
Confidence 3
No 97
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.04 E-value=1.7e-11 Score=118.85 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=40.2
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEE
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITM 98 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~I~~ 98 (421)
..+|+++++.+++|+ +++|+|+||||||||++.|++.+ |..| .|.+
T Consensus 22 ~~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 22 CTGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp CTTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 357899999999999 99999999999999999999998 7666 4543
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.01 E-value=1.4e-11 Score=138.72 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=91.5
Q ss_pred EEEe-CcEEEEeeeeeEEec-------CCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccc-cccCC
Q 014617 44 SFEK-GFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIID-GNFDD 114 (421)
Q Consensus 44 s~~~-g~~~~L~~Vsl~i~~-------Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig-~vfq~ 114 (421)
++.| +...++++++|.+++ |+ +++|+||||||||||+|+| |+++- ..++| ++||+
T Consensus 762 ~~~~~~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~~~------------~aqiG~~Vpq~ 825 (1022)
T 2o8b_B 762 TKTFFGDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLLAV------------MAQMGCYVPAE 825 (1022)
T ss_dssp -----CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHHHH------------HHTTTCCEESS
T ss_pred EEEecCCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHHHH------------HhheeEEeccC
Confidence 3444 456788999998887 89 9999999999999999999 88720 12345 77776
Q ss_pred CCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH--
Q 014617 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL-- 192 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~-- 192 (421)
+. ..++.+++... .+. .+.. . .+.........++.++.++ +..|.+.++|||++++|+..
T Consensus 826 ~~---~l~v~d~I~~r-ig~------~d~~-~--~~~stf~~em~~~a~al~l-----a~~~sLlLLDEp~~Gtd~~dg~ 887 (1022)
T 2o8b_B 826 VC---RLTPIDRVFTR-LGA------SDRI-M--SGESTFFVELSETASILMH-----ATAHSLVLVDELGRGTATFDGT 887 (1022)
T ss_dssp EE---EECCCSBEEEE-CC------------------CHHHHHHHHHHHHHHH-----CCTTCEEEEECTTTTSCHHHHH
T ss_pred cC---CCCHHHHHHHH-cCC------HHHH-h--hchhhhHHHHHHHHHHHHh-----CCCCcEEEEECCCCCCChHHHH
Confidence 42 22222222110 000 0000 0 0000001111223333444 77899999999999999864
Q ss_pred --HHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEe
Q 014617 193 --VKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 193 --~rrIlrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~ 227 (421)
.+.+++.+.++ |.++ .+.+..++|++.++ +|++.
T Consensus 888 ~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 888 AIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 45677888776 7766 78888899998886 46665
No 99
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.96 E-value=4.9e-11 Score=113.68 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=87.8
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHH---hcC-CCeeEEE--------ECCeecC--------CCccccccCCCCC---
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVIT--------MDNYNDS--------SRIIDGNFDDPRL--- 117 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~---gll-p~~G~I~--------~Dg~~~~--------~~~ig~vfq~p~l--- 117 (421)
.+|+ +++|+|||||||||++++|+ |+. +++|.+. .+|.+.. ++.++++||.+.-
T Consensus 25 ~~g~---~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAP---VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSC---EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCc---EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 6788 99999999999999999999 776 7888887 6666542 1235666654321
Q ss_pred --CccchHHHHHHhhhcccc----ccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014617 118 --TDYDTLLENIRGLKEGKA----VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 118 --~~~~tv~enl~~l~~~~~----i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
++..++.+++........ ...+.... .. .. ....+....-++++|-.+- ..+.|..++.++.+++.+.+
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~-~l--~~-~~~~~a~~~~~V~~gr~~~-~~v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVRE-AL--LR-RQRAFREAPGLIADGRDMG-TIVFPDAPVKIFLDASSQER 176 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHH-HH--HH-HHHTTCCSSCEEEEESSCC-CCCSTTCSEEEEEECCHHHH
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHH-HH--HH-HHHHHhhCCCEEEEeceec-eeecCCCCEEEEEECCHHHH
Confidence 111222222211100000 00000000 00 00 0001111223455553110 02445678999999998877
Q ss_pred HHHHHHHHHHHc--CCCHHHHHHHHhceEEEccCcEEeecCCccc-EEEeCCC
Q 014617 192 LVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIINKF 241 (421)
Q Consensus 192 ~~rrIlrdl~~~--G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aD-iiI~~~~ 241 (421)
..|+. +++..+ +.+..++..++..|........+.|....+| ++|.++.
T Consensus 177 ~~R~~-~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 177 AHRRM-LQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp HHHHH-HHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred HHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 65544 444443 5677888888888877777777888888888 6665443
No 100
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.93 E-value=3.2e-10 Score=111.85 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=41.9
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceE--EEccCc
Q 014617 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETV--YPMYKA 224 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V--~~m~~g 224 (421)
.|++.|++++... ....|.++++||||++||+....++..-+.+ +|.++ ...+.++||++ +.|.+|
T Consensus 225 ~q~v~ia~~l~~~-~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 225 KALVGLALLFALM-EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (322)
T ss_dssp HHHHHHHHHHHHT-TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred HHHHHHHHHHHHh-ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCC
Confidence 3788888887211 0135789999999999999987766644433 35444 11234567765 555554
No 101
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.92 E-value=3e-10 Score=118.24 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=65.7
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------CCccccccCCCCCC
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLT 118 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------~~~ig~vfq~p~l~ 118 (421)
.+++||.+.+|+ +++|+|+||||||||+++|+|++ ++.|.|.+++.+.. ++.+++++|++.++
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 367899999999 99999999999999999999999 88899999765432 23478999999888
Q ss_pred ccchHHHHHHhhh
Q 014617 119 DYDTLLENIRGLK 131 (421)
Q Consensus 119 ~~~tv~enl~~l~ 131 (421)
+..++.+++...+
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998764
No 102
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.88 E-value=4e-10 Score=113.21 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=58.9
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-----CCCcccccc-CCCCC--CccchH
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~-----~~~~ig~vf-q~p~l--~~~~tv 123 (421)
++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... .++.+++++ |++.. +...++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 399999999999 99999999999999999999999 8999999998531 234678888 77654 366788
Q ss_pred HHHHHhhh
Q 014617 124 LENIRGLK 131 (421)
Q Consensus 124 ~enl~~l~ 131 (421)
.+++....
T Consensus 242 ~~~i~~~l 249 (361)
T 2gza_A 242 ATLLRSCL 249 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988753
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=1.1e-10 Score=114.40 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=31.1
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc-C-CCeeEEEECCeecC----CCccccccCC
Q 014617 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDNYNDS----SRIIDGNFDD 114 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl-l-p~~G~I~~Dg~~~~----~~~ig~vfq~ 114 (421)
++++..|+.+.++++++|.+ +|+|+||||||||+++|.|. + |..| +.++|.+.. .+.+++.+|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 46777788888999999876 99999999999999999997 6 8888 777765432 2345677776
Q ss_pred CCCCccchHHHHH
Q 014617 115 PRLTDYDTLLENI 127 (421)
Q Consensus 115 p~l~~~~tv~enl 127 (421)
.......++.++.
T Consensus 72 ~~~~~~ltv~Dt~ 84 (301)
T 2qnr_A 72 RGVKLRLTVVDTP 84 (301)
T ss_dssp --CCEEEEEEEEC
T ss_pred CCcccCcchhhhh
Confidence 6555444444443
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.82 E-value=2.2e-11 Score=111.72 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=41.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-----CCccccccCCC
Q 014617 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDDP 115 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-----~~~ig~vfq~p 115 (421)
|+ +++|+|+||||||||+++|+|++++.| |.+||++.. ++.+++++|+.
T Consensus 1 G~---~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 AR---HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CC---CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CC---EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEec
Confidence 56 899999999999999999999986668 888887653 45678888865
No 105
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=6.3e-10 Score=101.13 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=45.3
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccccccCCCCCCccchHHHH
Q 014617 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~en 126 (421)
|+++.+|+ ++||+||||||||||+++|++++| .+.+++.... ...++|+||++..+...++.++
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678899 999999999999999999999986 3555554432 2347889998766655544433
No 106
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.81 E-value=1.2e-10 Score=116.08 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=61.7
Q ss_pred eEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCcccc
Q 014617 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDG 110 (421)
Q Consensus 43 ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig~ 110 (421)
+++.|+...+++++++++.+|+ ++||+|+||||||||+++|+|++ |+.|.|.+.+.+.. +..+++
T Consensus 35 ~~~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~ 111 (337)
T 2qm8_A 35 ADHRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMAR 111 (337)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTT
T ss_pred cccccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhee
Confidence 3444444567889999999999 99999999999999999999999 88899998887542 235789
Q ss_pred ccCCCCCCcc
Q 014617 111 NFDDPRLTDY 120 (421)
Q Consensus 111 vfq~p~l~~~ 120 (421)
++|+++++..
T Consensus 112 v~q~~~~~~~ 121 (337)
T 2qm8_A 112 LAIDRNAFIR 121 (337)
T ss_dssp GGGCTTEEEE
T ss_pred eccCcccccc
Confidence 9999987753
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.79 E-value=4.3e-10 Score=118.23 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=88.0
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhcccc
Q 014617 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~ 135 (421)
+..+.+|+ +++|+|+||||||||+++++++. |. |. +.+.+.+|++. ..+..+...+ +..
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------~vi~~~~ee~~----~~l~~~~~~~--g~~ 334 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENACAN-KE----------RAILFAYEESR----AQLLRNAYSW--GMD 334 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHHHTT-TC----------CEEEEESSSCH----HHHHHHHHTT--SCC
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------CEEEEEEeCCH----HHHHHHHHHc--CCC
Confidence 45889999 99999999999999999999998 53 32 01223344321 1222222110 000
Q ss_pred c-------cccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH-----HHH---HHHHHH
Q 014617 136 V-------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD-----LVK---RVFRDI 200 (421)
Q Consensus 136 i-------~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~-----~~r---rIlrdl 200 (421)
. .....+......+++ ..|++++++++ ..+|.++++| |++++|.. ... ++++.+
T Consensus 335 ~~~~~~~g~~~~~~~~p~~LS~g-----~~q~~~~a~~l-----~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 335 FEEMERQNLLKIVCAYPESAGLE-----DHLQIIKSEIN-----DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp HHHHHHTTSEEECCCCGGGSCHH-----HHHHHHHHHHH-----TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEEeccccCCHH-----HHHHHHHHHHH-----hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH
Confidence 0 000011111111111 23777788877 8899999999 99999987 443 456777
Q ss_pred HHcCCCH------H----------HHHHHHhceEEEccCcEE
Q 014617 201 QRVGQEP------E----------EIIHQISETVYPMYKAFI 226 (421)
Q Consensus 201 ~~~G~ti------~----------~vi~~~~d~V~~m~~g~I 226 (421)
++.|.|+ . ..+..+||+|+.|++|..
T Consensus 404 ~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge~ 445 (525)
T 1tf7_A 404 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEI 445 (525)
T ss_dssp HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEEE
T ss_pred HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEEe
Confidence 7778887 3 556788999999988864
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.78 E-value=3.4e-10 Score=113.71 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=69.9
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhccccc
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i 136 (421)
...+|+ +++|+||||||||||+++|+|++ |+ .|.|...+... .+...+... .+
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-----e~~~~~~~~-----------------~v 173 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-----EFVHESKKC-----------------LV 173 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-----CSCCCCSSS-----------------EE
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-----Hhhhhcccc-----------------ce
Confidence 567888 99999999999999999999998 54 45554322111 111110000 00
Q ss_pred cccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHH
Q 014617 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEI 210 (421)
Q Consensus 137 ~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~v 210 (421)
+... .+.....+ .-.|++++ ..+|.+.++|||+ |......+ .+..+.|.++ .+.
T Consensus 174 --~q~~------~~~~~~~~---~~~La~aL-----~~~PdvillDEp~---d~e~~~~~-~~~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 174 --NQRE------VHRDTLGF---SEALRSAL-----REDPDIILVGEMR---DLETIRLA-LTAAETGHLVFGTLHTTSA 233 (356)
T ss_dssp --EEEE------BTTTBSCH---HHHHHHHT-----TSCCSEEEESCCC---SHHHHHHH-HHHHHTTCEEEEEESCSSH
T ss_pred --eeee------eccccCCH---HHHHHHHh-----hhCcCEEecCCCC---CHHHHHHH-HHHHhcCCEEEEEEccChH
Confidence 0000 00000000 00456666 7899999999999 55554433 3445668776 343
Q ss_pred HHHHhceEEEccCc
Q 014617 211 IHQISETVYPMYKA 224 (421)
Q Consensus 211 i~~~~d~V~~m~~g 224 (421)
+ ..+||++.|..|
T Consensus 234 ~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 234 A-KTIDRVVDVFPA 246 (356)
T ss_dssp H-HHHHHHHHTSCH
T ss_pred H-HHHHHHhhhcCc
Confidence 4 667888777554
No 109
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.76 E-value=1.6e-09 Score=112.71 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=47.2
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~ 104 (421)
..+|+++||++++ + ++||+||||||||||+++|+|++ |+.|.|.++|.+..
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4579999999999 9 99999999999999999999999 99999999997653
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.76 E-value=1e-09 Score=122.51 Aligned_cols=147 Identities=7% Similarity=0.011 Sum_probs=86.7
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHH--------HhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV--------LNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L--------~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
+...++++++|.+++|+ +++|+||||||||||+|++ .|.. |..+.. ++. ++ .++
T Consensus 647 ~~~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------~~~-~d--~i~ 709 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------VSI-VD--CIL 709 (934)
T ss_dssp -CCCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------EEC-CS--EEE
T ss_pred CceeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------chH-HH--HHH
Confidence 34568899999999999 9999999999999999999 4443 322111 000 00 001
Q ss_pred ccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHH----H
Q 014617 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV----K 194 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~----r 194 (421)
....+.+++... .+.. ..++.-++.. +.....|.+.++|||++++|+... +
T Consensus 710 ~~ig~~d~l~~~-----------------lStf-----~~e~~~~a~i---l~~a~~~sLlLLDEp~~GlD~~~~~~i~~ 764 (934)
T 3thx_A 710 ARVGAGDSQLKG-----------------VSTF-----MAEMLETASI---LRSATKDSLIIIDELGRGTSTYDGFGLAW 764 (934)
T ss_dssp EECC--------------------------CHH-----HHHHHHHHHH---HHHCCTTCEEEEESCSCSSCHHHHHHHHH
T ss_pred HhcCchhhHHHh-----------------Hhhh-----HHHHHHHHHH---HHhccCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 111111111100 0000 0000001111 112457899999999999999753 4
Q ss_pred HHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014617 195 RVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 195 rIlrdl~~~-G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+++.+.++ |.++ ...+..+||++..+.+|++...+...++.
T Consensus 765 ~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 765 AISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp HHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 556777664 7766 22244689999999999998766665654
No 111
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.75 E-value=2e-09 Score=107.77 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=50.4
Q ss_pred eeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014617 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 42 ~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
+++..|+ +..+++++ |.+.+|+ ++||+||||||||||+++|+|+. |+.|.+.+.|..
T Consensus 50 ~l~~~~~tg~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 50 VIDQPFILGVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CCCSEECCSCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred ccceecCCCCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 4455555 56799999 9999999 99999999999999999999999 999999998864
No 112
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.71 E-value=8.2e-10 Score=120.97 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=76.3
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCCCccccccCCCCCCccchHHH
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~e 125 (421)
+...++++++|+ |+ +++|+||||||||||+|+|+|+. +..|.+. ...+..+++++| ++...++.+
T Consensus 564 ~~~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIALLAQVGSFV----PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp TSCCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----SSSEEEECCCSE---EEEECCC--
T ss_pred CCceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhhhhcccCcee----ehhccceeeHHH---hhccCCHHH
Confidence 446788999998 99 99999999999999999999985 5666432 111234666655 455556666
Q ss_pred HHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEE---ecCccHHHH-HHHHHHHH
Q 014617 126 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDLV-KRVFRDIQ 201 (421)
Q Consensus 126 nl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp---ts~LD~~~~-rrIlrdl~ 201 (421)
|+...... .. .+++-+++. +.....|.+.++||| |+++|.... +.+++.+.
T Consensus 631 ~l~~g~S~-----------------~~-----~e~~~la~i---l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~ 685 (765)
T 1ewq_A 631 DLAGGKST-----------------FM-----VEMEEVALI---LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 685 (765)
T ss_dssp ----CCSH-----------------HH-----HHHHHHHHH---HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccH-----------------HH-----HHHHHHHHH---HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 66442110 00 011111111 122568899999999 999998765 56776666
Q ss_pred HcCCCH
Q 014617 202 RVGQEP 207 (421)
Q Consensus 202 ~~G~ti 207 (421)
+.|.++
T Consensus 686 ~~g~~v 691 (765)
T 1ewq_A 686 ERRAYT 691 (765)
T ss_dssp HHTCEE
T ss_pred hCCCEE
Confidence 666655
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.70 E-value=3.3e-10 Score=104.28 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=37.7
Q ss_pred EEEeeeee-EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 014617 51 IVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (421)
Q Consensus 51 ~~L~~Vsl-~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg 100 (421)
..|+++.. .+++|+ +++|+||||||||||++.|++.. +..|.+.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666666 689999 99999999999999999999887 5555555443
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=5.5e-10 Score=114.43 Aligned_cols=142 Identities=9% Similarity=-0.066 Sum_probs=71.0
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee--EEEECCee-cCCCccccccCCCC
Q 014617 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDNYN-DSSRIIDGNFDDPR 116 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G--~I~~Dg~~-~~~~~ig~vfq~p~ 116 (421)
+++++.|+...++++++|.+ +|+|+||||||||+++|+|.. +..| .+..++.. .....+++++|.+.
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred EecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 34445555566778888765 999999999999999999997 4443 11111111 11234678888877
Q ss_pred CCccchHHHHHHhhhccccccccccccccc-cccccccccccCceEEEeehhhhhhhccCCc---cceEEEEe-cCccHH
Q 014617 117 LTDYDTLLENIRGLKEGKAVQVPIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPL---IDLRVSVT-GGVHFD 191 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~---ldL~DEpt-s~LD~~ 191 (421)
++...++.+++.+...... ...+... .........+..+++.|++++ ..++. ++++|+|| .++|+.
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~----~~~~~~i~~~i~~~~~~~l~qr~~IaRal-----~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDN----SNCWQPVIDYIDSKFEDYLNAESRVNRRQ-----MPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp -CEEEEEEECC---------------CHHHHHHHHHHHHHHTTTSCC-CCCC-----CCCC-CCEEEEECCC-CCSCCHH
T ss_pred cccceeeeechhhhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCeeEEEEEecCcccCCCHH
Confidence 7666666666544321000 0000000 000001112234677788886 55666 88999998 588876
Q ss_pred HHHHHHHHHH
Q 014617 192 LVKRVFRDIQ 201 (421)
Q Consensus 192 ~~rrIlrdl~ 201 (421)
.. .+++.+.
T Consensus 157 d~-~~lk~L~ 165 (418)
T 2qag_C 157 DI-EFMKRLH 165 (418)
T ss_dssp HH-HHHHHHT
T ss_pred HH-HHHHHHh
Confidence 52 4444443
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=2.6e-09 Score=100.03 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=47.0
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC---CCccccccCCCCCCccchH
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTL 123 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--~~G~I~~Dg~~~~---~~~ig~vfq~p~l~~~~tv 123 (421)
..++|+ +++|+||||||||||+++|+|++ | ..|.|.+.+.... ++.++|+||++..|..+++
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~ 79 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 79 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHh
Confidence 458999 99999999999999999999999 4 4788888776432 2458899998765554433
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.69 E-value=7.5e-09 Score=93.02 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=49.3
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-----CCccccccCCCCCCccchHHHHHHh
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-----~~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
.+++|+ +++|+|+||||||||+++|++. ++.|.|.+|+.+.. +..+++++|++. ...++.+++..
T Consensus 5 ~i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 367889 9999999999999999999998 67899999886431 123566766543 34677777755
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=2.5e-09 Score=104.68 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=39.7
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCC-------CccccccCCCCCC
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~---Dg~~~~~-------~~ig~vfq~p~l~ 118 (421)
.+..|+ +++|+||||||||||+++|+|+. |++|.|.+ +|.+.++ +.+++++|.|...
T Consensus 165 ~~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 165 EYLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HHhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 345788 99999999999999999999999 99999999 8876542 2579999998753
No 118
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.67 E-value=7.2e-09 Score=102.89 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=58.1
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-----------Ccc--ccccCCCCCCccchHHHH
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RII--DGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-----------~~i--g~vfq~p~l~~~~tv~en 126 (421)
++|+ +++|+||||||||||+++|++++ |+.|.|.++|.+..+ +.+ .+++|.+.+.+..++.++
T Consensus 127 ~~g~---vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPY---VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5677 99999999999999999999999 899999999987642 223 378899999999999999
Q ss_pred HHhhh
Q 014617 127 IRGLK 131 (421)
Q Consensus 127 l~~l~ 131 (421)
+....
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=6e-10 Score=114.24 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=51.7
Q ss_pred EEEeCcEEEEeeeeeEEecCCceeE--EEEEcCCCCcHHHHHHHHHhcCCCeeE-EEECCeecCCCccccccCCCCCCcc
Q 014617 44 SFEKGFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFMPSIAV-ITMDNYNDSSRIIDGNFDDPRLTDY 120 (421)
Q Consensus 44 s~~~g~~~~L~~Vsl~i~~Ge~~~I--igIiGpSGSGKSTL~r~L~gllp~~G~-I~~Dg~~~~~~~ig~vfq~p~l~~~ 120 (421)
++.|+... |+++|+++++|+ + +||+|+||||||||+++|+|+.- .|. +.-......++.+++++|++.+++.
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEEEEEC--CEEE
T ss_pred EEEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccceEeeEEEEeecCccccc
Confidence 45566666 999999999999 9 99999999999999999999851 111 1000000112357888888877666
Q ss_pred chHHHHHHh
Q 014617 121 DTLLENIRG 129 (421)
Q Consensus 121 ~tv~enl~~ 129 (421)
.++.+++.+
T Consensus 97 ltv~D~~~~ 105 (427)
T 2qag_B 97 LTIVSTVGF 105 (427)
T ss_dssp EEEEEEECC
T ss_pred cchhhhhhh
Confidence 666665543
No 120
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.65 E-value=1.9e-09 Score=118.69 Aligned_cols=144 Identities=10% Similarity=0.037 Sum_probs=85.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecC--CCccccccCCCCCCccchH
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTL 123 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~--~~~ig~vfq~p~l~~~~tv 123 (421)
+...++++++|. ++|+ +++|+||||||||||+|+|+|+. ...| .... ...+++++| ++...++
T Consensus 593 ~~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SSCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSSEEEECCCCE---EEEEEC-
T ss_pred CCceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHHHHHhcC------cccchhcccceeHHH---HHhhCCH
Confidence 456689999999 9999 99999999999999999999985 2222 1111 123454443 4445555
Q ss_pred HHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH---H-HHHHHHH
Q 014617 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD---L-VKRVFRD 199 (421)
Q Consensus 124 ~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~---~-~rrIlrd 199 (421)
.+++..... .+. . +. .+ -..++.....|.+.++|||++++|+. . .+.+++.
T Consensus 660 ~d~l~~~~s---------tf~-----~-e~-----~~-----~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~ 714 (800)
T 1wb9_A 660 ADDLASGRS---------TFM-----V-EM-----TE-----TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAEN 714 (800)
T ss_dssp -------------------CH-----H-HH-----HH-----HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHhhhh---------hhh-----H-HH-----HH-----HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHH
Confidence 555543211 000 0 00 00 01112226689999999997666654 3 3567788
Q ss_pred HHHc-CCCH------HHHHHHHhceEEEccCcEEeecC
Q 014617 200 IQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 200 l~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
+.++ |.++ .+. ..+||++..+.++++.-..
T Consensus 715 l~~~~g~~vl~~TH~~el-~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 715 LANKIKALTLFATHYFEL-TQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHTTCCEEEEECSCGGG-GGHHHHSTTEEEEEEEEEE
T ss_pred HHhccCCeEEEEeCCHHH-HHHhhhhhceEEEEEEEEE
Confidence 8774 7666 333 3478877667777765443
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.64 E-value=3.6e-09 Score=99.82 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=49.6
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHH---hcC-CCeeEEEECCeecC---CCccccccCCCCCCccchHHHHHHh
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~---gll-p~~G~I~~Dg~~~~---~~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
+++ +++|+|+||||||||+++|+ |+. |+.|.+..++.... ...+..++|+..+++..++.+++..
T Consensus 26 ~~~---~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLL---RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCC---EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356 99999999999999999999 887 77788777654321 1234456777777887888888865
No 122
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.56 E-value=4.2e-09 Score=107.89 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=62.0
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCccc
Q 014617 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig 109 (421)
++++.++...+|+++ +. .+|+ +++|+||||||||||+++|++++ |+.|.|.+++.... ...++
T Consensus 148 ~Lg~~~~~~~~L~~l-~~-~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRL-IK-RPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GSCCCHHHHHHHHHH-HT-SSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HcCCCHHHHHHHHHH-HH-hcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 444555444567776 43 7889 99999999999999999999998 78898888765431 12355
Q ss_pred ccc---------CCCCCC------ccchHHHHHHhhhc
Q 014617 110 GNF---------DDPRLT------DYDTLLENIRGLKE 132 (421)
Q Consensus 110 ~vf---------q~p~l~------~~~tv~enl~~l~~ 132 (421)
+.| |+|..+ +..|+.+++.....
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~t 260 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLT 260 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHh
Confidence 655 888763 33688888876543
No 123
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.55 E-value=6.7e-09 Score=95.92 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=40.9
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCC--CHHHHHHHHhceEEEccCcEEeecCCc-ccEE
Q 014617 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQT-AHIK 236 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~--ti~~vi~~~~d~V~~m~~g~I~p~~~~-aDii 236 (421)
..++++|.. +.....+..++..+.+++.+....| +.+++.++|. +..+...++..|+...+.....|.... ++++
T Consensus 124 ~~~vldg~~-~~~~~~~~~d~~i~l~~~~e~~~~R-~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~ 201 (227)
T 1cke_A 124 PGLIADGRD-MGTVVFPDAPVKIFLDASSEERAHR-RMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALV 201 (227)
T ss_dssp TCEEEEESS-CCCCCCTTCSEEEEEECCHHHHHHH-HHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEE
T ss_pred CCEEEECCC-ccceEecCCCEEEEEeCCHHHHHHH-HHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEE
Confidence 456666652 2223445678888888887765444 4444556676 677778888887766665555666554 3466
Q ss_pred EeCC
Q 014617 237 IINK 240 (421)
Q Consensus 237 I~~~ 240 (421)
|.++
T Consensus 202 Id~~ 205 (227)
T 1cke_A 202 LDST 205 (227)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6544
No 124
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.55 E-value=2.6e-08 Score=97.48 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=46.2
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCC-------CccccccCCCCCC-----ccchH
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT-----DYDTL 123 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~---Dg~~~~~-------~~ig~vfq~p~l~-----~~~tv 123 (421)
+..|+ +++|+|+||||||||+++|+ ++ |.+|.|.+ +|.+.++ +.+++++|+|.+. +..|+
T Consensus 162 ~l~G~---i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGF---ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTC---EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCc---EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34678 99999999999999999999 87 89999999 8876542 2579999998653 45566
Q ss_pred HHHH
Q 014617 124 LENI 127 (421)
Q Consensus 124 ~enl 127 (421)
+++
T Consensus 238 -e~l 240 (302)
T 2yv5_A 238 -REV 240 (302)
T ss_dssp -GGG
T ss_pred -HHH
Confidence 666
No 125
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=1.4e-08 Score=99.95 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCCC------ccccccCCCCCCc----cchH
Q 014617 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSSR------IIDGNFDDPRLTD----YDTL 123 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~---Dg~~~~~~------~ig~vfq~p~l~~----~~tv 123 (421)
+.+.+|+ +++|+|+||||||||+++|+|.. |..|.|.+ +|.+.++. ..++++|.|.+.. ..++
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 6677899 99999999999999999999998 89999998 77665421 1689999997654 4567
Q ss_pred HHHHH
Q 014617 124 LENIR 128 (421)
Q Consensus 124 ~enl~ 128 (421)
+++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 7774
No 126
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.55 E-value=1.8e-07 Score=85.37 Aligned_cols=121 Identities=18% Similarity=0.290 Sum_probs=68.6
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccc---c---CCCCCCccchHHHHHHhhhc
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGN---F---DDPRLTDYDTLLENIRGLKE 132 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~v---f---q~p~l~~~~tv~enl~~l~~ 132 (421)
.+++|. ++||+|+|||||||+++.|++.++....+..|++......+... + +.+..++...+.+.+..+..
T Consensus 17 ~~~~~~---~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 17 RGSKTF---IIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CSCCCE---EEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred cCCCCe---EEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 456667 99999999999999999999988667788888764432222111 1 11111222233333332221
Q ss_pred cccccccccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHH
Q 014617 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDL 192 (421)
Q Consensus 133 ~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~ 192 (421)
.. . .+... . ........+++|++|.+++. .......+...+.+.+.+...
T Consensus 94 ~~-~-~~~~~-------~-~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~ 144 (207)
T 2qt1_A 94 SA-R-HSVVS-------T-DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECK 144 (207)
T ss_dssp HH-T-TSSCC-------C------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHH
T ss_pred CC-C-CCCcC-------C-CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHH
Confidence 10 0 01000 0 01112345789999987664 355566788888887765544
No 127
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.51 E-value=3.3e-09 Score=106.10 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=73.6
Q ss_pred EEeee-eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--C-Ce----eE-EEECCeecC-CCccccccCCCCCCccc
Q 014617 52 VIRAC-QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPRLTDYD 121 (421)
Q Consensus 52 ~L~~V-sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p-~~----G~-I~~Dg~~~~-~~~ig~vfq~p~l~~~~ 121 (421)
.|+.+ .+.+++|+ +++|+||||||||||++.+++.. + +. |. |.+|+.... ++.+++++|.+.++..
T Consensus 119 ~LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-
Confidence 34444 57889999 99999999999999999999987 3 33 56 899887642 3567888888766543
Q ss_pred hHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhc-----cCCccceEEEEecCccHH
Q 014617 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-----LRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 122 tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~-----l~p~ldL~DEpts~LD~~ 191 (421)
++.+|+..... +. .... .+.+.+++.+ ... .+|.+.+.|+|++.+|+.
T Consensus 195 ~v~~ni~~~~~--------~~------~~~~-----~~~l~~~~~~---~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 195 EVLKHIYVARA--------FN------SNHQ-----MLLVQQAEDK---IKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHGGGEEEEEC--------CS------HHHH-----HHHHHHHHHH---HHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHhhCEEEEec--------CC------hHHH-----HHHHHHHHHH---HHHhccccCCCCEEEEeCchHhhhhh
Confidence 55555432210 00 0000 0111111222 112 578999999999999875
No 128
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=2.8e-08 Score=90.71 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=46.4
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC------CccccccCCCCCCccchHHHHHH
Q 014617 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~------~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
+..++|+ +++|+|+||||||||+++|++.+ |.+.+|+..... ...++.||++..+...++.+++.
T Consensus 24 m~~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 24 MTGEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp ----CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 4557788 99999999999999999999986 678888765432 24577888765555555555554
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.41 E-value=7.3e-08 Score=89.79 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=22.8
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHH-hcCC
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMP 91 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~-gllp 91 (421)
.-.+++||++++|+ ++||+||||||||||+++|+ +++|
T Consensus 15 ~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34688999999999 99999999999999999999 9884
No 130
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.40 E-value=3.6e-08 Score=109.79 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=35.4
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...++++|+|.+++|+ +++|+||||||||||+|+++++.
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHHH
Confidence 4568899999999999 99999999999999999998653
No 131
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.38 E-value=1.3e-08 Score=101.40 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCC-ccccccCCCCCCccchHHHHHHhhhcccccccccccccc
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~-~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~ 145 (421)
.+|+|+||+|||||||++.|+..++ ...|+.|++.+.+. .++- ..|..-....+..++..+..... ..+.++|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~~~i~T--akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~ 83 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQGMDIGT--AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKK 83 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTTCCTTT--TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-Cceeccccccccccccccc--cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHH
Confidence 3899999999999999999999884 56788888732211 1110 00000000000000000111111 333444443
Q ss_pred ccccccccccccCceEEEeehhhhhhhccCCccceEEEEe-cCcc--HHHHHHHHHHHHHcCCCHHHHHHHHhceEEEcc
Q 014617 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPMY 222 (421)
Q Consensus 146 ~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt-s~LD--~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~ 222 (421)
..+............++++.|..++.+++...++ ++|+ ++.| .+..+++.| +.++|.+ ++.++...+-|++
T Consensus 84 ~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~---~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 84 RAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN---KLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH---HHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH---HHHHHHHhhCcHH
Confidence 3222111111234567888888766677666665 4455 4433 225566666 5556653 4555555555555
Q ss_pred CcEEe
Q 014617 223 KAFIE 227 (421)
Q Consensus 223 ~g~I~ 227 (421)
..+|.
T Consensus 158 a~~I~ 162 (340)
T 3d3q_A 158 AKDIH 162 (340)
T ss_dssp HHHSC
T ss_pred HhhcC
Confidence 55443
No 132
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.38 E-value=1.5e-07 Score=85.22 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.9
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G 94 (421)
++.+|+ +++|+|||||||||++++|++.+ |+.|
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 567899 99999999999999999999999 7665
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.37 E-value=7.1e-08 Score=86.77 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC-CccccccCCCCCCccchHHHHHHhh
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRGL 130 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~-~~ig~vfq~p~l~~~~tv~enl~~l 130 (421)
+++|+||||||||||+++|++ +..|.+.+++..... ...++++|........++.+++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH
Confidence 899999999999999999998 456788888765432 2356666654444455777777653
No 134
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.35 E-value=1.8e-08 Score=97.22 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=45.9
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC-------CccccccCC
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDD 114 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~-------~~ig~vfq~ 114 (421)
+...+++++++.+++| ++|.||||||||||+++|++.+. .+.+.++|..+.. +.++++||.
T Consensus 31 ~~~~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~~-~~~i~i~g~~l~~~~~~~~~~~i~~vf~~ 98 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANESG-LNFISVKGPELLNMYVGESERAVRQVFQR 98 (274)
T ss_dssp HSHHHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHTT-CEEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred hCHHHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHcC-CCEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence 3345677788887765 89999999999999999999982 3788888865432 235566664
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=1.8e-08 Score=91.98 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=43.8
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEE--EECCeec
Q 014617 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNYND 103 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I--~~Dg~~~ 103 (421)
++++..++...+.+.+++..++|+ +++|+|+|||||||++++|++.++..|.+ .+|+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345555666667777888888999 99999999999999999999998434555 8887654
No 136
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.33 E-value=2.7e-08 Score=101.04 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=83.7
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHh------------cC-CCeeEEEECCeec--------CCCcc---ccccCCC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN------------FM-PSIAVITMDNYND--------SSRII---DGNFDDP 115 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~g------------ll-p~~G~I~~Dg~~~--------~~~~i---g~vfq~p 115 (421)
+.+|. .+||+|+||||||||+++|.| .. |+.|.+.++|... .++.+ ..++|.|
T Consensus 17 v~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 17 PGNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 46778 999999999999999999999 44 7899999987321 12222 2455666
Q ss_pred CCCccchHHHHH--HhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCC--ccceEEEEecCccHH
Q 014617 116 RLTDYDTLLENI--RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFD 191 (421)
Q Consensus 116 ~l~~~~tv~enl--~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~ 191 (421)
.+....+..+++ .++..-.....-..-... .+ ...+..+.+ ..+| .+++.|+++...|+.
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~---~~-------d~~i~~v~~------~~dP~~di~ildeel~~~D~~ 157 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRA---FD-------DAEIIHVEG------DVDPIRDLSIIVDELLIKDAE 157 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEEC---CC-------TTCSSCCSS------SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHhc---cc-------cceeeeecc------ccCcchhhhhchhhhHHHHHH
Confidence 655433322211 111000000000000000 00 000000111 2355 788889999999998
Q ss_pred HHHHHHHHHH----HcCCCH----HHHHHHHhceEE-EccCc-EEe
Q 014617 192 LVKRVFRDIQ----RVGQEP----EEIIHQISETVY-PMYKA-FIE 227 (421)
Q Consensus 192 ~~rrIlrdl~----~~G~ti----~~vi~~~~d~V~-~m~~g-~I~ 227 (421)
...+.+..+. +.|.|+ ...+.++|+++. .+.+| .+.
T Consensus 158 ~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~ 203 (392)
T 1ni3_A 158 FVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPI 203 (392)
T ss_dssp HHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCG
T ss_pred HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCcee
Confidence 7766553333 235553 556678889888 78888 554
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.31 E-value=8.5e-08 Score=100.62 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=45.0
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
.+++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..
T Consensus 248 ~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999 99999999999999999999999 889999998853
No 138
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.30 E-value=1.3e-08 Score=95.87 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=31.5
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014617 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
+++.+ + +++|+||||||||||+++|++++ |++|.|.++|...
T Consensus 23 ~~~~~-~---~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-L---VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-H---HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEcC-c---EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 44455 7 89999999999999999999999 9999999998764
No 139
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.29 E-value=8.9e-08 Score=96.50 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=42.3
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecC---CCccccccC
Q 014617 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDS---SRIIDGNFD 113 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-~G~I~~Dg~~~~---~~~ig~vfq 113 (421)
+|++++ +++|+ +++|+||||||||||+++|++++ |+ .|.|...+.... +..+++++|
T Consensus 127 ~l~~l~--~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred HHHHHh--hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEe
Confidence 344443 67899 99999999999999999999998 65 788866553321 234556666
No 140
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.27 E-value=3.3e-07 Score=91.93 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=49.2
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEEC-Ceec---CCCccccccCCCCCCccchHHHH
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYND---SSRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~D-g~~~---~~~~ig~vfq~p~l~~~~tv~en 126 (421)
++++++. .+|+ +++|+|+||||||||+++|+|.. |..|.|..+ |... ....+++++|++.+++..++.++
T Consensus 206 l~~L~~~-~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 3455554 4788 99999999999999999999987 678999887 5432 23467899998888887777663
No 141
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.27 E-value=1.4e-07 Score=93.50 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=35.7
Q ss_pred ccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH-----HHHHHHHhceEEEcc
Q 014617 173 KLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP-----EEIIHQISETVYPMY 222 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti-----~~vi~~~~d~V~~m~ 222 (421)
..+|.++++|||+++||+.....+. +++..+|.++ ...+..+||+++.+.
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 6689999999999999999877665 4444456665 122456778877764
No 142
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.27 E-value=6.2e-08 Score=92.54 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=36.3
Q ss_pred eee-EEEe-CcEEEEeeeeeEEec---CCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 41 DTL-SFEK-GFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 41 ~~l-s~~~-g~~~~L~~Vsl~i~~---Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++ ++.| +...+|+++||.+.+ |+ +++|+|++||||||+++.|++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc
Confidence 455 6666 667899999999999 99 99999999999999999999976
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=5.6e-07 Score=78.90 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=28.7
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCCCee--EEEEC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA--VITMD 99 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G--~I~~D 99 (421)
+|+ .++|.||||||||||++++++.++..| .+.++
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 788 999999999999999999999882235 44444
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=6e-07 Score=81.72 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=25.1
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...++++|||.+.++. +++|+|++||||||+++.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568999999999999 99999999999999999999876
No 145
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.14 E-value=6e-07 Score=86.80 Aligned_cols=73 Identities=8% Similarity=0.080 Sum_probs=46.0
Q ss_pred ceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014617 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
..++|++|.+++.....+..++..+++++.+.+..|...| .|.+..++..++..+ ..... ....||++|.
T Consensus 181 ~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R----~g~s~e~~~~ri~~q-~~~~~-----~~~~AD~vId 250 (281)
T 2f6r_A 181 KTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVER----DGLSEAAAQSRLQSQ-MSGQQ-----LVEQSNVVLS 250 (281)
T ss_dssp CCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHH----HCCCHHHHHHHHHTS-CCHHH-----HHHTCSEEEE
T ss_pred CCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHc----CCCCHHHHHHHHHHc-CChHh-----hHhhCCEEEE
Confidence 4689999987665444566788999998866654443323 377877777777655 22111 1135788886
Q ss_pred CCC
Q 014617 239 NKF 241 (421)
Q Consensus 239 ~~~ 241 (421)
++.
T Consensus 251 n~~ 253 (281)
T 2f6r_A 251 TLW 253 (281)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 146
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.11 E-value=5.9e-07 Score=80.83 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCee
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~ 102 (421)
+++|+|+||||||||+++|++++ |+ .|.|.+||.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 89999999999999999999999 76 8999999875
No 147
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.06 E-value=2.6e-07 Score=88.73 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=26.4
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++|+ +++|+|+||||||||++.+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999 99999999999999999999876
No 148
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.06 E-value=1.5e-06 Score=78.28 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp 91 (421)
+++|+||||||||||+++|++++|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 899999999999999999999994
No 149
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.06 E-value=1.7e-06 Score=85.48 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=54.2
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------------CCccccc-cCC
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------------SRIIDGN-FDD 114 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------------~~~ig~v-fq~ 114 (421)
+++++|...+++ +++|+|+|||||||++..|++.+ +..+.|.+.+.+.. +..++++ +|.
T Consensus 95 ~~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 367888888888 99999999999999999999998 66777777665432 1234556 565
Q ss_pred CCCCccchHHHHHHhh
Q 014617 115 PRLTDYDTLLENIRGL 130 (421)
Q Consensus 115 p~l~~~~tv~enl~~l 130 (421)
....+..++.+++...
T Consensus 172 ~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 172 LNADPASVVFDAIKKA 187 (320)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5555555566666543
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.05 E-value=5.9e-07 Score=79.55 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.2
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 103 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~ 103 (421)
.+|+ +++|+|+|||||||++++|++.+ |.+.+|+...
T Consensus 6 ~~g~---~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHH---IYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFL 42 (175)
T ss_dssp TTSE---EEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGG
T ss_pred CCCc---EEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccc
Confidence 3567 99999999999999999999875 5666666443
No 151
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.05 E-value=1e-06 Score=88.14 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred EeeeeeEEec--CCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe----eEEEE
Q 014617 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI----AVITM 98 (421)
Q Consensus 53 L~~Vsl~i~~--Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~----G~I~~ 98 (421)
.+.|++.+.+ |+ .++|+|+||||||||+++|+|++ |+. |.+.+
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4568999999 99 99999999999999999999999 777 66554
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=3e-06 Score=75.93 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=28.1
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEE
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITM 98 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp--~~G~I~~ 98 (421)
+|+ +++|+||||||||||+++|++..| ..|.|..
T Consensus 4 ~g~---~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRK---TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCC---EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 577 999999999999999999999884 3455543
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.99 E-value=2.2e-06 Score=78.26 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.6
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
++|+ +++|+||||||||||+++|++++|
T Consensus 2 ~~g~---~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPR---PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---C---CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677 999999999999999999999874
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.99 E-value=6.4e-07 Score=81.10 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=32.0
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++++.|+ ..++++ |.+.+|. .++|+|+||||||||+++|+|..
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhheee-cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444 245555 7778888 99999999999999999999875
No 155
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.98 E-value=2.6e-06 Score=75.78 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=29.6
Q ss_pred eeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 014617 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (421)
Q Consensus 54 ~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~ 93 (421)
+++++.+.+| +.+|+|+||||||||+++|.+++ +..
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l~~~~ 54 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4566666654 89999999999999999999998 543
No 156
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.95 E-value=1.3e-06 Score=80.07 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC--C---C----ccc-cccCCCCCCccchHHHHHHh----hh
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--S---R----IID-GNFDDPRLTDYDTLLENIRG----LK 131 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~--~---~----~ig-~vfq~p~l~~~~tv~enl~~----l~ 131 (421)
-.+|||+|++||||||+++.|+..+ ....|..|.+.-. . . ..| .+++ +..++...+.+.+.. ..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHHH
Confidence 3489999999999999999999875 3445665554210 0 0 011 1222 333333322221100 00
Q ss_pred ccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHH
Q 014617 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 195 (421)
Q Consensus 132 ~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rr 195 (421)
....+..|.+......... . ...++++++.+++.....+.++...+++++.+.+..|.
T Consensus 90 ~l~~i~hP~i~~~~~~~~~----~--~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rl 147 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEIIN----K--TSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRN 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH----T--CCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHC
T ss_pred HHHhhhCHHHHHHHHHHHH----H--cCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHH
Confidence 0011112221111111110 0 13678888876665556677889999999877765443
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=1.2e-05 Score=74.34 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=34.2
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-C-----CeeEEEECCee
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-P-----SIAVITMDNYN 102 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p-----~~G~I~~Dg~~ 102 (421)
+++|+ +++|+||||||||||++.|++. + | ..+.+.+++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 68999 9999999999999999999994 4 3 56788887654
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=2.2e-05 Score=77.03 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=28.4
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHh-cC-CCeeEEEECCee
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNYN 102 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~g-ll-p~~G~I~~Dg~~ 102 (421)
..|..+. +.|.||||+||||++++|++ +. |+.|.+.++|..
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 3444444 89999999999999999999 56 888999888764
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=3.1e-06 Score=75.44 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.3
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 014617 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G 94 (421)
++.+++|+ .++|.||||||||||+++|++.+ |..|
T Consensus 32 ~~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGK---GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCC---EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCC---EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 34557788 99999999999999999999987 4443
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.83 E-value=1.6e-05 Score=71.34 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=32.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC-C-----------CeeEEEECCee
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM-P-----------SIAVITMDNYN 102 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll-p-----------~~G~I~~Dg~~ 102 (421)
..+.++|+|+||||||||++.+++.. + ..|.+.++|..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 35689999999999999999999986 4 47889898864
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=1e-05 Score=74.26 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.9
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
++|+ +++|+||||||||||++.|++.+|
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 5688 999999999999999999999984
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.82 E-value=8e-06 Score=83.46 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=32.6
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
-++++|+++.++ .++|+|+||||||||+++|++.
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcC
Confidence 479999999999 9999999999999999999998
No 163
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.80 E-value=5.2e-07 Score=85.28 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=41.6
Q ss_pred cCCccceEEEEecCccHHHHHHHHHHHHHc--CCCHHHHHHHHhceEEEccCcEEeecCCccc-EEEeC
Q 014617 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKIIN 239 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIlrdl~~~--G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aD-iiI~~ 239 (421)
..|.-++++|.+++++.+..|+. +++.++ +.+..++..++..+-..-...++.|....+| ++|.+
T Consensus 142 V~pda~lkifl~A~~e~Ra~Rr~-~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDT 209 (233)
T 3r20_A 142 VLPDADVKIFLTASAEERARRRN-AQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDT 209 (233)
T ss_dssp CCTTCSEEEEEECCHHHHHHHHH-HHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEEC
T ss_pred EcCCCCEEEEEECCHHHHHHHHH-HHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEEC
Confidence 34556799999999888765554 445444 5666777666665554444455566666666 66653
No 164
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.79 E-value=6.3e-06 Score=80.97 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC---------CCeeEEEECCeecC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDS 104 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll---------p~~G~I~~Dg~~~~ 104 (421)
.+++|+|+||||||||++.|.++. |+.|.|.+||..+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 389999999999999999999884 57899999987653
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.75 E-value=7e-06 Score=76.50 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.3
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~ 102 (421)
..++|+ +++|.|+||||||||+++|++. .|.|.+.+.+
T Consensus 16 ~~~~g~---~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPF---TVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEP 53 (230)
T ss_dssp TTCCCE---EEEEECSTTSCHHHHHHTTGGG---TTTEEEECCT
T ss_pred CCCCce---EEEEECCCCCCHHHHHHHHHhc---cCCeEEEecC
Confidence 346778 9999999999999999999998 4666666653
No 166
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.72 E-value=1.4e-05 Score=70.30 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++|+|+|||||||++++|++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999987
No 167
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.68 E-value=4.3e-06 Score=81.44 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=43.5
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014617 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
+++++.|+... +++++. +|+ +++|+|+|||||||+++.|++.+ +..|.|.+.+.+.
T Consensus 80 ~~l~~~~~~~~--~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 80 EALKEALGGEA--RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHHCCCC--ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 34444554332 678887 788 99999999999999999999998 6677888776554
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=7.8e-06 Score=82.53 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=44.9
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEE-CCeecC-CCccccccCCC
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITM-DNYNDS-SRIIDGNFDDP 115 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~-Dg~~~~-~~~ig~vfq~p 115 (421)
..+++++++.+++|+ +++|.||||||||||+++|++.. .|.+.. +.-... ...++++||.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~~~~~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC--GGKALNVNLPLDRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH--CCEEECCSSCTTTHHHHHGGGTTCS
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc--CCcEEEEeccchhHHHHHHHhcchh
Confidence 357889999999999 99999999999999999999975 344443 211110 11367777765
No 169
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.64 E-value=1.5e-05 Score=84.36 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=35.7
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee-EE-EECCeec
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNYND 103 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~I-~~Dg~~~ 103 (421)
.+++|+ +++|+|+||||||||+++|++.+ |..| .+ .+||...
T Consensus 365 ~~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 467888 99999999999999999999999 8776 56 4887643
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.64 E-value=2.6e-05 Score=71.75 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.3
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
...+|+ +++|+||||||||||+++|.+..|
T Consensus 15 ~~~~g~---~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRK---TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCC---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 335778 999999999999999999999875
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.64 E-value=1.5e-05 Score=78.15 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.3
Q ss_pred eeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014617 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 56 Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
+++...+++ +++|+|+|||||||+++.|++.+ +..+.|.+.+.+.
T Consensus 97 ~~~~~~~~~---vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPF---VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CcccCCCCe---EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 344456677 99999999999999999999998 7667777766543
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=2.1e-06 Score=84.79 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=54.1
Q ss_pred eeEEEeCcEEEEeeeeeEEecC----CceeEEEEEcCCCCcHHHHHHHHHhcC-----CCeeEEEECCeec-------CC
Q 014617 42 TLSFEKGFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYND-------SS 105 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~G----e~~~IigIiGpSGSGKSTL~r~L~gll-----p~~G~I~~Dg~~~-------~~ 105 (421)
+++..+|...+++++++.++.| +.+-.++|.||||+|||||+++|++.+ +.+|.+..++.+. .+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~ 102 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLER 102 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCT
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccC
Confidence 4444456566777788877765 222289999999999999999999986 1233333333221 12
Q ss_pred CccccccCCCCCCccchHHHHHHh
Q 014617 106 RIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
..+.++.|...+.. ++.+++..
T Consensus 103 ~~v~~iDE~~~l~~--~~~e~L~~ 124 (334)
T 1in4_A 103 GDVLFIDEIHRLNK--AVEELLYS 124 (334)
T ss_dssp TCEEEEETGGGCCH--HHHHHHHH
T ss_pred CCEEEEcchhhcCH--HHHHHHHH
Confidence 34666666554443 56666643
No 173
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.62 E-value=1.2e-05 Score=75.66 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=51.7
Q ss_pred EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccccccCCCC-C
Q 014617 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPR-L 117 (421)
Q Consensus 46 ~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig~vfq~p~-l 117 (421)
.++...+++++++.+++| ++|.||||||||||+++|++.+. .|.+.+++.+.. .+.++++||... .
T Consensus 34 ~~~~~~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 107 (254)
T 1ixz_A 34 FLKNPSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKRH 107 (254)
T ss_dssp HHHCHHHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHCHHHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 344445677888877765 88999999999999999999984 778888775432 123455666532 2
Q ss_pred CccchHHHHHH
Q 014617 118 TDYDTLLENIR 128 (421)
Q Consensus 118 ~~~~tv~enl~ 128 (421)
.+..++.+++.
T Consensus 108 ~~~i~~~Deid 118 (254)
T 1ixz_A 108 APCIVFIDEID 118 (254)
T ss_dssp SSEEEEEETHH
T ss_pred CCeEEEehhhh
Confidence 33344445553
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.58 E-value=1.4e-05 Score=76.36 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccccccCC
Q 014617 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDD 114 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig~vfq~ 114 (421)
++...++...+++++++.+++| ++|.||||||||||+++|++.+. .|.+.+++.+.. .+.++++||.
T Consensus 54 ~l~~~~~~~~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 54 EIVEFLKNPSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHHCHHHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455556788888888765 88999999999999999999984 778888775432 1234555655
Q ss_pred CC-CCccchHHHHHH
Q 014617 115 PR-LTDYDTLLENIR 128 (421)
Q Consensus 115 p~-l~~~~tv~enl~ 128 (421)
.. ..+..++.+++.
T Consensus 128 ~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 128 AKRHAPCIVFIDEID 142 (278)
T ss_dssp HHTSCSEEEEEETHH
T ss_pred HHhcCCcEEehhhhH
Confidence 32 233344445553
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.58 E-value=5.6e-05 Score=67.92 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC------CC------eeEEEECCee
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM------PS------IAVITMDNYN 102 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll------p~------~G~I~~Dg~~ 102 (421)
.+.++|+|+||||||||++++++.. |+ .|.+.++|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 4579999999999999999999984 22 5788888863
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.57 E-value=1.8e-05 Score=70.23 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=31.2
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCCCee--EEEECCeec
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA--VITMDNYND 103 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G--~I~~Dg~~~ 103 (421)
+|. +++|+|++||||||+++.|++.++..| .+.+|+...
T Consensus 4 ~g~---~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGC---TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 466 999999999999999999999872134 777776544
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.54 E-value=4.1e-05 Score=69.40 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.++||+|++||||||+++.|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 48999999999999999999983
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.50 E-value=5.4e-05 Score=68.76 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.9
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
-+++|+ +++|+|+||||||||++.+++ .+..+.+.++.
T Consensus 16 gi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred CCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 478999 999999999999999999998 43345555543
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.43 E-value=3.5e-05 Score=70.53 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=34.0
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee--EEEECCee
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA--VITMDNYN 102 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G--~I~~Dg~~ 102 (421)
+.+|. ++.|.|++||||||+++.|.+.+ |..| .+.+|+..
T Consensus 22 ~~~~~---~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGL---TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp TSSCE---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCC---EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45677 99999999999999999999998 5677 88888643
No 180
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.41 E-value=7.3e-05 Score=66.92 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=30.6
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
++|+...++. +++|+|++||||||+++.|+..+.....+..|.
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 4677778888 999999999999999999998732333444443
No 181
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.40 E-value=5.3e-05 Score=75.90 Aligned_cols=76 Identities=11% Similarity=-0.063 Sum_probs=49.9
Q ss_pred ceEEEeehhhh---hhh-ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH---HHHHHHHhceEEEccCcEEeecCC
Q 014617 159 SRIVIIEGIYA---LSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP---EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 159 qrVlIaegl~~---L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti---~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
|+++|+.++.- +.. ...|.++++|||+++||+.....++..+.+.+.|+ .+ ...+||+++.+++|.+...+.
T Consensus 272 q~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~~~~~i~~l~~G~i~~~g~ 350 (359)
T 2o5v_A 272 RTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE-LAPGAALTLRAQAGRFTPVAD 350 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCTTCSEEEEEETTEEEECCC
T ss_pred HHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccccCCEEEEEECCEEEecCC
Confidence 66777777621 111 16788889999999999888777776665533333 10 011788888888888877776
Q ss_pred cccE
Q 014617 232 TAHI 235 (421)
Q Consensus 232 ~aDi 235 (421)
..++
T Consensus 351 ~~~~ 354 (359)
T 2o5v_A 351 EEMQ 354 (359)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 5554
No 182
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=0.00037 Score=69.41 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg 100 (421)
-+++|+ ++.|.|++|||||||+..++... +....+.++.
T Consensus 57 Gl~~G~---iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGR---VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCe---EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 358999 99999999999999999888765 3334455543
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.37 E-value=2.5e-05 Score=83.32 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=49.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe-eEEEECCe
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNY 101 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~-G~I~~Dg~ 101 (421)
+++++--+|...+++++++.+.+|+ .++|.||||+|||||+++|++++ +.. |.+.+++.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 3445555677888999999999999 99999999999999999999999 444 77777654
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.35 E-value=8.8e-05 Score=67.01 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
+|+|+|++||||||+++.|++ + +...+..|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C-CCEEEEccH
Confidence 799999999999999999999 5 333454444
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.35 E-value=0.0001 Score=75.03 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=27.7
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 014617 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~ 93 (421)
+++..|+ +++|+||||||||||+++|.+++ +.+
T Consensus 21 ~~~~~~~---~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESN---FTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCS---EEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCC---EEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 3456788 99999999999999999999998 544
No 186
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.33 E-value=9.3e-05 Score=67.28 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.8
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
..+|. +++|+|||||||||+++.|...+|
T Consensus 9 ~~~~~---~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIP---PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCC---CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCC---EEEEECCCCCCHHHHHHHHHHhCc
Confidence 35677 999999999999999999998875
No 187
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=1.1e-05 Score=85.20 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=42.5
Q ss_pred eCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014617 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 47 ~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
++...+++++++.+ +|+ +++|.||||+|||||+++|++.+ +..+.|.+.+.
T Consensus 93 i~~~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 93 ILEYLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34455777888887 788 99999999999999999999998 77888887775
No 188
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.29 E-value=3.3e-05 Score=76.49 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=37.8
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~ 98 (421)
+...+++++++...++. +++|+|++|||||||++.|++.+ +..+.+.+
T Consensus 41 ~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34456677777778888 99999999999999999999987 44444443
No 189
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.28 E-value=0.00014 Score=73.80 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.4
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHH--HhcCC------CeeEEEECCee
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKV--LNFMP------SIAVITMDNYN 102 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L--~gllp------~~G~I~~Dg~~ 102 (421)
-+++|+ +++|+||||||||||++.+ ++++| ..+.+++++..
T Consensus 174 GI~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 468999 9999999999999999955 45554 24488888754
No 190
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.28 E-value=8.7e-05 Score=72.26 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=27.5
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G 94 (421)
.+|+ +++++|+|||||||++..|++.+ +..|
T Consensus 103 ~~g~---vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSK---YIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSS---EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCc---EEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 4577 99999999999999999999998 5556
No 191
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.27 E-value=0.0001 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred EEeeeeeEEe---cCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 52 VIRACQLLAQ---KNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 52 ~L~~Vsl~i~---~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
-|.++++.+. +|. +|.|.|++||||||+++.|...++
T Consensus 12 ~~~~~~~~~~~~~~g~---~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSA---FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCE---EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCe---EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566667666 666 999999999999999999999883
No 192
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00011 Score=66.53 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|+|++||||||+++.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999876
No 193
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00019 Score=64.34 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++.+|+|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3569999999999999999999986
No 194
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00018 Score=62.61 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
No 195
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00028 Score=62.93 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=20.9
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+++++++..+... ++++|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~k----i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHGK----LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------CE----EEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCccE----EEEECCCCCCHHHHHHHHhcC
Confidence 46788888766654 899999999999999999984
No 196
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.17 E-value=0.00016 Score=63.07 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998655
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=0.00012 Score=72.79 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
.+++|+|++|||||||+++|.+.+ +..|.|.+.+.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 399999999999999999999987 655655555443
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00028 Score=65.02 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.9
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC
Q 014617 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg 100 (421)
.--+++|+ +++|+|+||||||||+..++... ...+.+.++.
T Consensus 17 ~gGl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTSEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34569999 99999999999999987665544 4445555554
No 199
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.15 E-value=0.00023 Score=65.14 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~g 88 (421)
+.+|+|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999998
No 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00021 Score=62.86 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp 91 (421)
+|.|+|+|||||||+++.|+..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999884
No 201
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.12 E-value=0.00026 Score=62.04 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~g 88 (421)
|.+|.|.|++||||||+++.|+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35899999999999999999998
No 202
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.11 E-value=0.00022 Score=61.61 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|+|.|++||||||+++.| ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37999999999999999999 544
No 203
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.10 E-value=0.0006 Score=69.62 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC-------------CCeeEEEECCee
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM-------------PSIAVITMDNYN 102 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll-------------p~~G~I~~Dg~~ 102 (421)
.++.++|+|+||||||||+++|.|.. +..|.+.++|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 46789999999999999999999873 235788888864
No 204
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.08 E-value=0.0003 Score=63.19 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p---~~G~I~~Dg 100 (421)
+++|+|+||||||||++.|.+.+ + ..|.+..++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 89999999999999999999876 2 357777654
No 205
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00018 Score=64.16 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=28.5
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeE-EEECC
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV-ITMDN 100 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~-I~~Dg 100 (421)
.+|. ++.|.|++||||||+++.|+..+ +..+. +.+|+
T Consensus 11 ~~~~---~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGI---VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCc---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4566 99999999999999999999987 33333 34554
No 206
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.04 E-value=0.0003 Score=65.26 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=46.1
Q ss_pred ceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEE
Q 014617 159 SRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 159 qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
..++++++-+++- ......+|....++++.+.+..|-. .+.|.+..++..++.... +. .+....||++|
T Consensus 112 ~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~----~Rdg~s~eea~~ri~~Q~-~~-----eek~~~AD~VI 181 (210)
T 4i1u_A 112 GPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVM----QRNGFTREQVEAIIARQA-TR-----EARLAAADDVI 181 (210)
T ss_dssp SSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHH----HHHCCCHHHHHHHHHHSC-CH-----HHHHHTCSEEE
T ss_pred CCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHH----hcCCCCHHHHHHHHHHcC-Ch-----HHHHHhCCEEE
Confidence 3467777765554 3445568888999988666544332 223888887777766542 22 23446899999
Q ss_pred eCC
Q 014617 238 INK 240 (421)
Q Consensus 238 ~~~ 240 (421)
.|+
T Consensus 182 dN~ 184 (210)
T 4i1u_A 182 VND 184 (210)
T ss_dssp ECS
T ss_pred ECC
Confidence 776
No 207
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.04 E-value=0.00024 Score=67.07 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=29.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~ 102 (421)
.+.++.|+|++||||||+++.|+..++ .+.+.+|+-.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~ 67 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDS 67 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHH
Confidence 344999999999999999999999883 2456666643
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.03 E-value=0.00036 Score=69.82 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=38.0
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecCC----CccccccCCC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSS----RIIDGNFDDP 115 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~I~~Dg~~~~~----~~ig~vfq~p 115 (421)
+++|+ ++.|.||+|||||||+..++... +..| .+.+++..... +.+++.+|+.
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSL 116 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGC
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhh
Confidence 58999 99999999999999999999887 4434 45666653221 2355555543
No 209
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.02 E-value=0.00031 Score=66.46 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
++.|+||||||||||++.|++.++ .-.+..|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHH
Confidence 789999999999999999998763 346666764
No 210
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.01 E-value=0.00018 Score=72.86 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=53.2
Q ss_pred Cccccccccceeeeeec-CcceecCeeeeeeeEEEeC-cEEEEe--------------eeeeEEecCCceeEEEEEcCCC
Q 014617 13 RRRPGLLRDQVQLVKKK-DSDRYEIVPIEDTLSFEKG-FFIVIR--------------ACQLLAQKNHGIILVGVAGPSG 76 (421)
Q Consensus 13 ~~~~~~~~~~~~l~~~~-~~~~y~~~~v~~~ls~~~g-~~~~L~--------------~Vsl~i~~Ge~~~IigIiGpSG 76 (421)
+|...|++-+. ++. ...........+++++.|. .+..|+ |+.+.+.+|+ .++|+||+|
T Consensus 111 ER~faLl~v~~---vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQ---r~~IvG~sG 184 (422)
T 3ice_A 111 ERYFALLKVNE---VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ---RGLIVAPPK 184 (422)
T ss_dssp CCSEEEEEEEE---ESSSCHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTC---EEEEECCSS
T ss_pred chHHHHhccCc---ccCCChhhhcCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCc---EEEEecCCC
Confidence 45566666442 111 1112233456778888885 467888 8999999999 999999999
Q ss_pred CcHHHHHHHHHhcC
Q 014617 77 AGKTVFTEKVLNFM 90 (421)
Q Consensus 77 SGKSTL~r~L~gll 90 (421)
+|||||++.|++.+
T Consensus 185 ~GKTtLl~~Iar~i 198 (422)
T 3ice_A 185 AGKTMLLQNIAQSI 198 (422)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHH
Confidence 99999999999875
No 211
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.00 E-value=0.00031 Score=62.19 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998754
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.99 E-value=0.00027 Score=72.34 Aligned_cols=57 Identities=19% Similarity=0.072 Sum_probs=42.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014617 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
.+++...|+... +++++. +++ +++++|++||||||++..|++.+ +..+.|.+.+.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~---vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSE---EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHHHHHHhCCCc--ccccCC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 334545555433 567776 677 99999999999999999999998 7666776655443
No 213
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00011 Score=66.31 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=28.4
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+++++++..++. -++|+|++|||||||++.+.+-
T Consensus 14 ~~l~~~~~~~~~~----ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG----KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE----EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc----EEEEECCCCCCHHHHHHHHhcC
Confidence 4667777766555 4899999999999999999863
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.00065 Score=59.68 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
No 215
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00044 Score=61.21 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|+|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 216
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=5.7e-05 Score=74.21 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=39.2
Q ss_pred eEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 014617 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (421)
Q Consensus 43 ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~ 93 (421)
++.-+|...+++.++..++.|+-+. +.+.||+|+||||+++++++.+ +..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3334466667888888889998222 9999999999999999999987 543
No 217
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.00055 Score=66.09 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
.+.++.|+|+|||||||+++.|...++ .+.++++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 355999999999999999999998764 24455554
No 218
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.88 E-value=0.00056 Score=60.39 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|.|++||||||+++.|+..+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999866
No 219
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00052 Score=61.30 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999976
No 220
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.87 E-value=0.00057 Score=59.33 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++|+|++|+|||||++.+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.00057 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998865
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.84 E-value=0.00021 Score=69.61 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred ee-eeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014617 54 RA-CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 54 ~~-Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
++ +++..+ +. +++++|++|+||||++..|++.+ +..+.|.+.+.+
T Consensus 89 ~~~i~~~~~-~~---vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PY---VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SE---EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccccCCC-Ce---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45 677655 67 99999999999999999999998 555666655444
No 223
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.82 E-value=0.00053 Score=75.73 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=57.5
Q ss_pred ceEEEeehhhhhhhccCC--ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc------
Q 014617 159 SRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM------ 221 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m------ 221 (421)
|||.||.++ ..+| .++++||||++||+....++ ++++++.|.|+ ++++. .||+|+.|
T Consensus 386 QRV~LA~aL-----~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~ 459 (842)
T 2vf7_A 386 QRLRLATQL-----YSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGE 459 (842)
T ss_dssp HHHHHHHHT-----TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGG
T ss_pred HHHHHHHHH-----hhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCccc
Confidence 888888888 6666 59999999999998866655 46787789888 77665 69999999
Q ss_pred cCcEEeecCCcccE
Q 014617 222 YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 ~~g~I~p~~~~aDi 235 (421)
.+|++...+..+++
T Consensus 460 ~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 460 KGGEILYSGPPEGL 473 (842)
T ss_dssp GCCSEEEEECGGGG
T ss_pred CCCEEEEecCHHHH
Confidence 78888877776665
No 224
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00052 Score=60.46 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.|+|++||||||+++.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00067 Score=63.02 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=44.4
Q ss_pred EEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCC--CHHHHHHHHhceEEEccCcEEeecCCccc-EEE
Q 014617 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IKI 237 (421)
Q Consensus 161 VlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~--ti~~vi~~~~d~V~~m~~g~I~p~~~~aD-iiI 237 (421)
.++++|..... .+.+..++.++.+++.+.+..|.+.+ ..++|. +..++...+..|..+.....+.|....+| ++|
T Consensus 137 ~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~~~~-~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vI 214 (236)
T 1q3t_A 137 GIVMDGRDIGT-VVLPQAELKIFLVASVDERAERRYKE-NIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYL 214 (236)
T ss_dssp CEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEE
T ss_pred CEEEECCcchh-hhccCCCEEEEEECCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEE
Confidence 45556653211 23345688999999877765443333 345553 66666666665544444444555555555 777
Q ss_pred eCC
Q 014617 238 INK 240 (421)
Q Consensus 238 ~~~ 240 (421)
.++
T Consensus 215 d~~ 217 (236)
T 1q3t_A 215 DTT 217 (236)
T ss_dssp ECS
T ss_pred cCC
Confidence 544
No 226
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.80 E-value=0.00063 Score=61.09 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++|.|++||||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999865
No 227
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.80 E-value=9.9e-05 Score=82.21 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=59.7
Q ss_pred CceEEEeehhhhhhhccCC--ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc-----
Q 014617 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM----- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m----- 221 (421)
.|||.||+++ ...| .++++||||++||+....+++ ++++++|.|+ ++++.. ||+++.|
T Consensus 470 ~QRv~LAraL-----~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag 543 (916)
T 3pih_A 470 SQRIRLATQI-----GSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGG 543 (916)
T ss_dssp HHHHHHHHHH-----HTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSG
T ss_pred HHHHHHHHHH-----hhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcc
Confidence 3999999999 6544 499999999999998776655 5666668888 777755 9999999
Q ss_pred -cCcEEeecCCcccEE
Q 014617 222 -YKAFIEPDLQTAHIK 236 (421)
Q Consensus 222 -~~g~I~p~~~~aDii 236 (421)
++|++...+...++.
T Consensus 544 ~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 544 TNGGRVVFQGTVDELL 559 (916)
T ss_dssp GGCSEEEEEECHHHHH
T ss_pred cCCCEEEEeechhhhh
Confidence 899999888877763
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.80 E-value=0.00025 Score=64.16 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 229
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.79 E-value=0.00074 Score=59.75 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|+|++||||||+++.|+..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
No 230
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.78 E-value=0.00065 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999765
No 231
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.78 E-value=0.00083 Score=60.20 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999987
No 232
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.76 E-value=0.00056 Score=61.29 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEEC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMD 99 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-p---~~G~I~~D 99 (421)
..+++|+|++|||||||+..|...+ . ..+.+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3489999999999999999999876 2 34555544
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.76 E-value=0.00072 Score=61.43 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCCC
Q 014617 69 VGVAGPSGAGKTVFTEKVLNFMPS 92 (421)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gllp~ 92 (421)
|.|+||||||||||++.|....|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 669999999999999999887764
No 234
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.75 E-value=0.00069 Score=60.38 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999876
No 235
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.00079 Score=60.57 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEEC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~D 99 (421)
+.+|+|.|++||||||+++.|+..+. ...+..|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHH
Confidence 45899999999999999999997762 2344444
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.00084 Score=60.30 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
.+|.|.|++||||||+++.|+..++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3899999999999999999998773
No 237
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.71 E-value=0.00085 Score=59.22 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|+|.|++||||||+++.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
No 238
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.71 E-value=0.00078 Score=61.61 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998766
No 239
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.70 E-value=0.00083 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|.|++||||||+++.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999876
No 240
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.69 E-value=0.00086 Score=59.65 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 241
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=96.68 E-value=0.00042 Score=57.27 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=40.2
Q ss_pred CceEEEEEeeecCCCCeEeeeeeeeceeeeEeccc------ccccceeeee
Q 014617 305 DGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGL------MALGYTIATI 349 (421)
Q Consensus 305 ~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~g~------~~~g~~~~~~ 349 (421)
+.+++|.|.|+.+++|+|++..++|+|++|||+|. .++|++++..
T Consensus 21 ~~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l 71 (106)
T 3dhx_A 21 VPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEM 71 (106)
T ss_dssp EEEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEE
Confidence 47899999999999999999999999999999998 4677777654
No 242
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.68 E-value=0.00097 Score=60.13 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999865
No 243
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.67 E-value=0.0006 Score=60.04 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999876
No 244
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.00089 Score=59.12 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|.|++||||||+++.|+..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998765
No 245
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.64 E-value=0.00099 Score=58.94 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEEC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~D 99 (421)
+|+|.|++||||||+++.|+..+ .....+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999999999999999865 233345444
No 246
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.001 Score=61.71 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=61.9
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhccccccc
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~ 138 (421)
+.+|+ .+.|.|++||||||++..+.... ...+ .....+.+++.|......++.+++....... ...
T Consensus 73 i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~---------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~-~~~ 139 (235)
T 3llm_A 73 ISQNS---VVIIRGATGCGKTTQVPQFILDDFIQND---------RAAECNIVVTQPRRISAVSVAERVAFERGEE-PGK 139 (235)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTT---------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC-TTS
T ss_pred HhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcC---------CCCceEEEEeccchHHHHHHHHHHHHHhccc-cCc
Confidence 35788 99999999999999887665431 1100 0123345566665544555666665432111 000
Q ss_pred cccccccccccccc-cccccCceEEEeehhhhhh----hccCCccceEEEEec-CccHHHHHHHHHHHH
Q 014617 139 PIYDFKSSSRIGYR-TLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTG-GVHFDLVKRVFRDIQ 201 (421)
Q Consensus 139 p~~~~~~~~~~~~~-~~~~~~qrVlIaegl~~L~----d~l~p~ldL~DEpts-~LD~~~~rrIlrdl~ 201 (421)
..+...... .......+++++-.-.++. +.-+-.+.+.||++. ++|.......++++.
T Consensus 140 -----~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 140 -----SCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp -----SEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred -----eEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 000000001 1111234566664421111 223446788899876 466555444444443
No 247
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.62 E-value=0.0011 Score=59.75 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999865
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.60 E-value=0.00067 Score=70.78 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=38.0
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND 103 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~ 103 (421)
.+++++++.+++| +.|.||||+|||||+++|++.. ..+.+.+++.+.
T Consensus 54 ~~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGG
T ss_pred hhhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHH
Confidence 4566777777664 8899999999999999999998 467888887644
No 249
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.59 E-value=0.0012 Score=61.93 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.+|+|.|++||||||+++.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 250
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.58 E-value=0.0011 Score=59.56 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+|+|.|++||||||+++.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999999865
No 251
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.58 E-value=0.0011 Score=60.17 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997765
No 252
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.58 E-value=0.0011 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999863
No 253
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.56 E-value=0.00089 Score=59.23 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|+|++||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999865
No 254
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0011 Score=57.87 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 255
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.54 E-value=0.00081 Score=65.28 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++|+|++|||||||++.|.|.-
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 89999999999999999999863
No 256
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.54 E-value=0.00029 Score=78.49 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=59.5
Q ss_pred CceEEEeehhhhhhhccC--CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc-----
Q 014617 158 SSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM----- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~--p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m----- 221 (421)
.|||.||.++ ... |.++++||||++||+....+++ +++++.|.|+ ++++. .||+|+.|
T Consensus 510 kQRV~LA~aL-----~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG 583 (972)
T 2r6f_A 510 AQRIRLATQI-----GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAG 583 (972)
T ss_dssp HHHHHHHHHH-----TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSG
T ss_pred HHHHHHHHHH-----hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCcc
Confidence 3999999998 554 5899999999999998766554 7777779998 66665 69999999
Q ss_pred -cCcEEeecCCcccE
Q 014617 222 -YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 -~~g~I~p~~~~aDi 235 (421)
++|++..++..+++
T Consensus 584 ~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 584 IHGGEVVAAGTPEEV 598 (972)
T ss_dssp GGCCSEEEEECTTTT
T ss_pred CCCCEEEEecCHHHH
Confidence 78999888877765
No 257
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0012 Score=60.84 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999999999776
No 258
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0022 Score=63.28 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~ 102 (421)
.++.|+||+|||||||++.|+..++ ...|..|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-CELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CcEEeccchh
Confidence 3899999999999999999999873 5678888753
No 259
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.53 E-value=0.0014 Score=56.97 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 260
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.52 E-value=0.0013 Score=59.86 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998766
No 261
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0014 Score=57.11 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++|.|+.||||||+++.|+..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999865
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.48 E-value=0.0021 Score=63.19 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
.++.|+||+|||||||+..|+..++ ...|+.|+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 4899999999999999999998874 457777775
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.48 E-value=0.0012 Score=58.30 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+-++|+|++|+|||||++.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999863
No 264
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.47 E-value=0.00052 Score=71.62 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=30.0
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..++++++.+.+| +.+|+|+||||||||+.+|..++
T Consensus 49 ~~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 49 ATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TTBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHh
Confidence 3556777777765 89999999999999999997774
No 265
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=66.09 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=29.1
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhc-----------C-CCeeEEEECC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF-----------M-PSIAVITMDN 100 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl-----------l-p~~G~I~~Dg 100 (421)
+..+. .+||+|++|+|||||+++|.+. + |..|.+.+++
T Consensus 19 i~~~~---kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 19 FGTSL---KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSSCC---CEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 34555 8999999999999999999987 3 5566666554
No 266
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.45 E-value=0.00084 Score=66.56 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.2
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
..+|+++++.++ .|+|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 347777877776 5999999999999999999994
No 267
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.44 E-value=0.00032 Score=78.44 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=59.4
Q ss_pred CceEEEeehhhhhhhccC--CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc-----
Q 014617 158 SSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM----- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~--p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m----- 221 (421)
.|||.||.++ ... +.++++||||++||+....+++ +++++.|.|+ ++++. .||+|+.|
T Consensus 527 kQRV~LA~aL-----~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG 600 (993)
T 2ygr_A 527 AQRIRLATQI-----GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAG 600 (993)
T ss_dssp HHHHHHHHHH-----TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSG
T ss_pred HHHHHHHHHH-----hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccc
Confidence 3999999998 655 5899999999999998776655 7777789998 66665 69999999
Q ss_pred -cCcEEeecCCcccE
Q 014617 222 -YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 -~~g~I~p~~~~aDi 235 (421)
++|.+..++..+++
T Consensus 601 ~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 601 EHGGRIVHSGPYDEL 615 (993)
T ss_dssp GGCCSCCEEECHHHH
T ss_pred cCCCEEEEeeCHHHh
Confidence 78888887777665
No 268
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.43 E-value=0.0024 Score=63.84 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC------------CCeeEEEECCee
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM------------PSIAVITMDNYN 102 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll------------p~~G~I~~Dg~~ 102 (421)
+++|+|++|||||||+++|.+.. +..+.+.++|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 59999999999999999999875 235777777753
No 269
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.43 E-value=0.0018 Score=62.59 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
+..+. .+.|.||+|+|||||+++|++.+ ..+.+.+++.
T Consensus 46 ~~~~~---~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~~ 83 (301)
T 3cf0_A 46 MTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 83 (301)
T ss_dssp CCCCS---EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECHH
T ss_pred CCCCc---eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEhH
Confidence 35566 89999999999999999999987 4566777654
No 270
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=96.41 E-value=0.00085 Score=54.65 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.7
Q ss_pred CCceEEEEEeeecCCCCeEeeeeeeeceeeeEeccc------ccccceeeee
Q 014617 304 RDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGL------MALGYTIATI 349 (421)
Q Consensus 304 ~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~g~------~~~g~~~~~~ 349 (421)
.+.+++|.|.|..+.+|+|++..++|+|++|||+|. ..+|++++..
T Consensus 22 ~~~lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l 73 (100)
T 2qsw_A 22 NGKIVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQL 73 (100)
T ss_dssp SSEEEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEE
Confidence 356899999999999999999999999999999999 4567777654
No 271
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.38 E-value=0.0046 Score=60.67 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=31.6
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
....+++..+.+ .|. -+.|.|+||+||||++..+.+.
T Consensus 131 ~~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 457888888887 566 7999999999999999999883
No 272
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.36 E-value=0.0014 Score=60.00 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 273
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=59.62 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+.|+|+|++|+|||||++.|.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 346689999999999999999999975
No 274
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.36 E-value=0.0017 Score=62.17 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999999854
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.35 E-value=0.0019 Score=59.01 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..|.|.|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 389999999999999999999876
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.34 E-value=0.0028 Score=62.21 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=29.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
+.++.|+||+|||||||+..|+..++ .-.|+.|+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 44899999999999999999998874 456777775
No 277
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.30 E-value=0.0017 Score=59.08 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+++|+|++||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999999999876
No 278
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.25 E-value=0.0024 Score=63.72 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.0
Q ss_pred eeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 54 ~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
++..+++.+ . +..|.|+|||||||++.+|.-
T Consensus 17 ~~~~i~f~~-g---l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-G---IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-E---EEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-C---eEEEECCCCCCHHHHHHHHHH
Confidence 444555555 4 899999999999999999985
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.24 E-value=0.0035 Score=62.17 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
.++.|+||+|||||||+..|+..++ ...|..|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 3899999999999999999999884 456777776
No 280
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.22 E-value=0.0026 Score=60.14 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|+..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999864
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.17 E-value=0.0033 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++-++|+|++|||||||++.+.+-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999865
No 282
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=96.15 E-value=0.0012 Score=53.81 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=39.6
Q ss_pred ceEEEEEeeecCCCCeEeeeeeeeceeeeEeccc------ccccceeeee
Q 014617 306 GKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGL------MALGYTIATI 349 (421)
Q Consensus 306 ~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~g~------~~~g~~~~~~ 349 (421)
.+++|.|.|..+++|+|++..++|+|++|||+|. ..+|++++..
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l 73 (101)
T 2qrr_A 24 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAEL 73 (101)
T ss_dssp EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEE
Confidence 4899999999999999999999999999999999 4667777654
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.15 E-value=0.0027 Score=69.95 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=31.7
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
.++.++ .+.|.||||||||||+++|++.++. ..+.+++.
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~~ 272 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANETGA-FFFLINGP 272 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEHH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEch
Confidence 567788 8999999999999999999999832 34666654
No 284
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.14 E-value=0.0033 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+-++++|++|||||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998763
No 285
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.13 E-value=0.0026 Score=59.45 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~ 102 (421)
-+.|.||+|+|||||+++|++.+. .-.+.+++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~-~~~~~i~~~~ 80 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK-VPFFTISGSD 80 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CCEEEECSCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC-CCEEEEeHHH
Confidence 488999999999999999999872 1246666543
No 286
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=96.13 E-value=0.0007 Score=55.15 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=40.0
Q ss_pred CceEEEEEeeecCCCCeEeeeeeeeceeeeEeccc------ccccceeeee
Q 014617 305 DGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGL------MALGYTIATI 349 (421)
Q Consensus 305 ~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~il~g~------~~~g~~~~~~ 349 (421)
+.+++|.|.|..+.+|+|++..++|+|++|||+|. .++|++++..
T Consensus 20 ~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l 70 (98)
T 3ced_A 20 AYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHI 70 (98)
T ss_dssp CEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEE
Confidence 46899999999999999999999999999999999 4567777654
No 287
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0028 Score=60.06 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++|+|++|||||||++.|.|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999874
No 288
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.11 E-value=0.0036 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|||||||++.+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 5679999999999999999998753
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.10 E-value=0.002 Score=66.00 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~ 98 (421)
+.+++++|++||||||++..|+..+ +..+.|.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4599999999999999999999887 54444443
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0032 Score=55.46 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+.++|+|++|||||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999875
No 291
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.08 E-value=0.0038 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++++|++|||||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.08 E-value=0.0033 Score=63.80 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
.+++|+||||||||||+..|+..++ ...|+.|+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-CeEeecCcc
Confidence 4899999999999999999998874 346787773
No 293
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.06 E-value=0.004 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++-++|+|++|||||||++.+.+..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45679999999999999999998753
No 294
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.04 E-value=0.0045 Score=53.97 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 446789999999999999999998753
No 295
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.04 E-value=0.0041 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++-++|+|++|||||||++.+.+-
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999875
No 296
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0041 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++++|++|||||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999874
No 297
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=96.03 E-value=0.02 Score=51.47 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=79.6
Q ss_pred hHHHHHHHhcccccc--cccccceeecCCCCCCchhhhhhhhcc--cCCceEEEEEeeecCCCCeEeeeeeeeceee-e-
Q 014617 261 TVDEIKAVMSKEHTE--TTEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSV-R- 334 (421)
Q Consensus 261 ~~~~i~~~l~~~~~~--~~~~~~~i~~~p~~~~~~~~~~~l~~~--~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~-~- 334 (421)
..+.+...|...... ......|.|...|.. .+||.| +.++.+.|+|.++. +++.-.+...++.|+- .
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 345555556553211 122355899988754 568988 66889999999998 7775333333332211 0
Q ss_pred EecccccccceeeeeeecccceeecCcEEEEeehhcccCcceEEEeecc
Q 014617 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVLFHL 383 (421)
Q Consensus 335 il~g~~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (421)
+..-|..|||..+..+...-..|.-+...|.+|+.++++ .|+.|....
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~ 138 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVIS 138 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEC
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEec
Confidence 111135779999999999999999999999999999998 899998765
No 298
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.03 E-value=0.0042 Score=53.66 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+-++|+|++|||||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35679999999999999999998754
No 299
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.02 E-value=0.0042 Score=52.91 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++-++++|++|||||||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998764
No 300
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0036 Score=57.65 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 301
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.99 E-value=0.0045 Score=52.83 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998864
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.98 E-value=0.0043 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+.+-++|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999876
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.98 E-value=0.0046 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++-++|+|++|+|||||++.+.+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998763
No 304
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.97 E-value=0.0039 Score=53.83 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.++|+|++|||||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998753
No 305
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.97 E-value=0.0036 Score=56.95 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998865
No 306
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.97 E-value=0.0043 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 307
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.94 E-value=0.0067 Score=59.25 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=31.9
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--C------CeeEEEECCe
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P------SIAVITMDNY 101 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p------~~G~I~~Dg~ 101 (421)
-+++|+ ++.|.|++|||||||+..++... | ..+.++++..
T Consensus 103 Gl~~G~---i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRT---MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCc---EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 468999 99999999999999999998764 4 3455666543
No 308
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.93 E-value=0.0042 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMPS 92 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~ 92 (421)
+.+|+|.|+.||||||+++.|+..++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999998743
No 309
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.91 E-value=0.0048 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++-++|+|++|+|||||++.+.+.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998764
No 310
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.90 E-value=0.0051 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|||||||++.+.+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998753
No 311
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.88 E-value=0.0052 Score=53.92 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
|-+++-|+++|.+|||||||++.+.+..
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3345689999999999999999998753
No 312
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.87 E-value=0.0053 Score=52.25 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++-++|+|++|+|||||++.+.+-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 567999999999999999999874
No 313
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.85 E-value=0.0051 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhcc
Confidence 3568999999999999999998653
No 314
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.85 E-value=0.0053 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
++-++|+|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 315
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.0049 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...++|+|++|||||||++.|.+.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999998764
No 316
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.84 E-value=0.0052 Score=53.79 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35679999999999999999999873
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.83 E-value=0.0055 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 318
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.83 E-value=0.0059 Score=55.07 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.3
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
..+++.-+.+. |. -+.|.|+||+|||||+..+...
T Consensus 5 ~~lHas~v~v~-G~---gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFLVID-KM---GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEEEET-TE---EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEEEC-CE---EEEEEcCCCCCHHHHHHHHHHc
Confidence 34555555544 44 5999999999999999988763
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.82 E-value=0.0043 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+.++|+|++|||||||++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 320
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.82 E-value=0.0045 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
..+-++|+|++|||||||++.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999875
No 321
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.82 E-value=0.0052 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++.+|.|+||.||||+|.++.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 335599999999999999999999876
No 322
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.81 E-value=0.0041 Score=65.00 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=27.3
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
.+.+++.++. -+.|+|.+||||||++++|..
T Consensus 159 pv~ldL~~~p---HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMP---HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSC---SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCc---eEEEECCCCCCHHHHHHHHHH
Confidence 4667778888 899999999999999999875
No 323
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.80 E-value=0.0048 Score=56.36 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..|.|.|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999866
No 324
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.80 E-value=0.0038 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+-++|+|++|+|||||++.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 468999999999999999998754
No 325
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.79 E-value=0.0067 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998853
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.77 E-value=0.0064 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|++|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3567999999999999999999875
No 327
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.74 E-value=0.0061 Score=52.45 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|++|+|||||++.+.+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999865
No 328
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.74 E-value=0.0054 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.435 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..|.|.|+.||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 329
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.73 E-value=0.008 Score=59.33 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.3
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhc--CC------CeeEEEECCe
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--MP------SIAVITMDNY 101 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--lp------~~G~I~~Dg~ 101 (421)
-+++|+ ++.|.|++|||||||+..++.. +| ..+.++++..
T Consensus 118 Gl~~G~---i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMA---ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSE---EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCe---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 468899 9999999999999999999886 33 2345566543
No 330
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0066 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-|+|+|++|||||||++.+.+-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4567999999999999999999874
No 331
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.69 E-value=0.0068 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-|+|+|++|||||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457999999999999999999875
No 332
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0068 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-++|+|++|+|||||++.+.+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 446689999999999999999998754
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.69 E-value=0.0062 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+-|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 346789999999999999999999864
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.66 E-value=0.0052 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++|+|++|||||||++.+.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4579999999999999999998863
No 335
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.65 E-value=0.0051 Score=54.09 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|+|||||++.+.+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998753
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.62 E-value=0.0075 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-++|+|.+|+|||||++.+.+..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999998754
No 337
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.61 E-value=0.0054 Score=62.22 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|.|+|++||||||+++.|+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4599999999999999999998765
No 338
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.61 E-value=0.0065 Score=56.78 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+.+.|+|+|.+|||||||++.|.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999875
No 339
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.60 E-value=0.0051 Score=61.47 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEE
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVI 96 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~~G~I 96 (421)
-+.|+|+|||||||+++.|.... +..+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~ 66 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRV 66 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 68999999999999999999876 433333
No 340
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.58 E-value=0.004 Score=54.15 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
.+++-++|+|++|||||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998874
No 341
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.58 E-value=0.0075 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|||||||++.+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998753
No 342
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.58 E-value=0.0081 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++-++|+|++|+|||||++.+.+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998753
No 343
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.57 E-value=0.0078 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-|+|+|++|||||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999875
No 344
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.56 E-value=0.0078 Score=54.53 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||++.++..+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.56 E-value=0.0072 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+.+.|+|++|+|||||++.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999999865
No 346
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.55 E-value=0.0087 Score=59.89 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+||+|.+|+|||||+++|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999983
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.54 E-value=0.0047 Score=58.20 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFMPS 92 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~ 92 (421)
+.+|.|.|+.||||||+++.|+..+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 449999999999999999999998743
No 348
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.54 E-value=0.008 Score=52.18 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+++-++|+|++|+|||||++.+.+-
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999853
No 349
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.53 E-value=0.0085 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|++|+|||||++.+.+-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3668999999999999999877664
No 350
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.51 E-value=0.0087 Score=52.03 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+-++|+|++|+|||||++.+.+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998753
No 351
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.51 E-value=0.0087 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998764
No 352
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.51 E-value=0.0074 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||+++|+..+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999876
No 353
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.49 E-value=0.0089 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++++|++|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999865
No 354
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=95.49 E-value=0.0013 Score=57.41 Aligned_cols=59 Identities=5% Similarity=-0.075 Sum_probs=43.3
Q ss_pred CceEEEe------ehhhhhhhccCCccceEEEEecCccHHHHHHHHH---HHHHcCCCH------HHHHHHHhceEEEcc
Q 014617 158 SSRIVII------EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR---DIQRVGQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 158 ~qrVlIa------egl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlr---dl~~~G~ti------~~vi~~~~d~V~~m~ 222 (421)
.||+.|+ +++ ..+|.++++||||+++|+.....+.+ ++.++|.|+ . .+..+||+++.+.
T Consensus 63 ~qrv~lA~~Lalaral-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 63 RIALGLAFRLAMSLYL-----AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIRIS 136 (148)
T ss_dssp HHHHHHHHHHHHHHHH-----HSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHhhhHHHHHH-----cCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence 3677654 566 67899999999999999998766654 444446666 4 3467889988883
No 355
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.48 E-value=0.0097 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-++|+|++|+|||||++.+.+..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 345689999999999999999998764
No 356
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.48 E-value=0.0091 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+-|+|+|.+|||||||++.+.+-.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 35689999999999999999998653
No 357
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0086 Score=52.96 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+-|+|+|++|+|||||++.+.+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35579999999999999999998753
No 358
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.48 E-value=0.0075 Score=57.69 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+.++|+|++|||||||++.+.|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999985
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.47 E-value=0.0091 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.|++|+|||||++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998875
No 360
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.46 E-value=0.0091 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-++|+|++|+|||||++.+.+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345679999999999999999998753
No 361
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.46 E-value=0.0091 Score=54.97 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=27.0
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+++.-+.+ .|. .+.|+||||||||||+..|+...
T Consensus 24 ~lHa~~v~~-~g~---~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGL---GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTE---EEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCE---EEEEECCCCCCHHHHHHHHHHhC
Confidence 445544444 455 79999999999999999998765
No 362
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.45 E-value=0.0094 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-++|+|++|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 445679999999999999999999876
No 363
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.45 E-value=0.006 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~~ 93 (421)
.+.|.||+|+||||++++|++.+ +..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 79999999999999999999987 443
No 364
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.44 E-value=0.0079 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 365
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.0063 Score=59.28 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p----~~G~I~~Dg 100 (421)
.+.|.||+|+|||||++.+++.+ + ....+.++.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 89999999999999999999887 2 455666664
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.44 E-value=0.0083 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++|+|.+|||||||++.++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.43 E-value=0.008 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
-++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 368
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.41 E-value=0.0092 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|.+|+|||||++.+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4579999999999999999999864
No 369
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.40 E-value=0.011 Score=52.10 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...+-++|+|++|+|||||++.+.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998764
No 370
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.40 E-value=0.0072 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.38 E-value=0.0097 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 5679999999999999999998763
No 372
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.36 E-value=0.011 Score=52.28 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=23.7
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...+.+-++|+|.+|+|||||++.+.+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34456789999999999999999998863
No 373
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.35 E-value=0.0063 Score=60.56 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-++|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 36999999999999999998764
No 374
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.35 E-value=0.0056 Score=64.86 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=31.0
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCCCee---EEEECCee
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA---VITMDNYN 102 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G---~I~~Dg~~ 102 (421)
.|.++.+|.|.|.+||||||+++.|...+...| .+.+|+..
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345567999999999999999999998873223 56666543
No 375
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.34 E-value=0.0098 Score=56.57 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+||||+++++++..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 78999999999999999999987
No 376
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.011 Score=51.80 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998763
No 377
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.32 E-value=0.0048 Score=63.18 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=33.5
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
...|+++..-+++|+ ++.|+|++|+|||||+..++...
T Consensus 190 ~~~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 190 FTELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CHHHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 345777777789999 99999999999999999999876
No 378
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.32 E-value=0.0063 Score=65.58 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=28.4
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEE
Q 014617 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVI 96 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I 96 (421)
+.++++. .++|+|++|||||||++.|.+.. +..|.|
T Consensus 4 ~~~~~~~---~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIR---TVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp --CCCEE---EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CccCCCc---EEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 4456677 99999999999999999999775 255655
No 379
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.31 E-value=0.0068 Score=59.99 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++++|++|+|||||++.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999865
No 380
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.01 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|.+|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999864
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.29 E-value=0.0072 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
...+-++|+|.+|+|||||++.+.+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999754
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.27 E-value=0.011 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998753
No 383
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.27 E-value=0.0097 Score=56.67 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.++|+|.+|||||||++.|.|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999999863
No 384
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.26 E-value=0.0051 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+.|+|+|.+|||||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999886
No 385
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.25 E-value=0.01 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.|+||.||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999876
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.25 E-value=0.011 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+-.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 387
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.22 E-value=0.011 Score=57.94 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CC--eeEEEEC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMD 99 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~--~G~I~~D 99 (421)
.+.|.||+|+|||||++.+++.+ +. ...+.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999999999999987 42 4556665
No 388
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.20 E-value=0.0095 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|.+|+|||||++.+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999875
No 389
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.20 E-value=0.012 Score=52.37 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.+-|+|+|++|+|||||++.+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 345689999999999999999998764
No 390
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.012 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|.+|+|||||++.+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3557999999999999999999875
No 391
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.012 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|+|||||++.+.+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 35579999999999999999998753
No 392
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.16 E-value=0.015 Score=57.46 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=27.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEEC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~D 99 (421)
+..+++|+|+.|+|||||+..|+..+ ...+.+..|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 45689999999999999999998765 234555554
No 393
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.16 E-value=0.011 Score=57.21 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+..|+|+|.+|||||||++.|.|.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999986
No 394
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.16 E-value=0.01 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+-|+|+|++|+|||||++.+.+.-
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998753
No 395
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.15 E-value=0.012 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-|+|+|++|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 35679999999999999999998753
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.15 E-value=0.013 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|++|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 397
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.15 E-value=0.011 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
..+-|+|+|++|+|||||++.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999865
No 398
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.15 E-value=0.0095 Score=56.53 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998765
No 399
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.14 E-value=0.0081 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999765
No 400
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.13 E-value=0.012 Score=57.11 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 401
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.12 E-value=0.012 Score=55.60 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=24.5
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++.+.+.++++|.+|+|||||++.|.+.-
T Consensus 35 ~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 35 EDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34446789999999999999999998863
No 402
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.12 E-value=0.012 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.+.++|+|.+|+|||||++.|.+.-
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999999863
No 403
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.12 E-value=0.011 Score=52.03 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=22.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.....-|+|+|.+|+|||||++.+.+..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3446689999999999999999998753
No 404
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.10 E-value=0.013 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++++|.+|||||||++.+.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4579999999999999999999853
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.10 E-value=0.011 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++++|.+|+|||||++.+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.08 E-value=0.013 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 408
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.07 E-value=0.015 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999998875
No 409
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.06 E-value=0.012 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.++|+|++|+|||||++.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 410
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.05 E-value=0.013 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4579999999999999999999865
No 411
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.05 E-value=0.012 Score=52.63 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=24.7
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+..+..+.|.||+|+|||||++.++..+
T Consensus 39 l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 39 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444434488999999999999999998876
No 412
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.03 E-value=0.013 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+++-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999864
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
++-|+|+|.+|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4479999999999999999998854
No 414
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.013 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+|||||+++++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999987
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.02 E-value=0.011 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999876
No 416
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.98 E-value=0.014 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.7
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|. +|.|.|++||||||+++.|...+
T Consensus 26 ~~~---~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAK---FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCC---EEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 456 99999999999999999999877
No 417
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.98 E-value=0.013 Score=53.38 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999987
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.94 E-value=0.014 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.|.|++||||||+++.|...+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998877
No 419
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.90 E-value=0.015 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 557999999999999999999864
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.88 E-value=0.016 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 345679999999999999999998764
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.87 E-value=0.018 Score=53.26 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.0
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeE
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAV 95 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~ 95 (421)
+|. +|.+.|++||||||+++.|...+...+.
T Consensus 4 ~g~---~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGK---LILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCC---EEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCe---EEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 466 9999999999999999999998843333
No 422
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.86 E-value=0.016 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999863
No 423
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.86 E-value=0.013 Score=56.07 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..|+|+|..|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999873
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.84 E-value=0.017 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+||||++++++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999876
No 425
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.018 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|++|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 426
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.82 E-value=0.013 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-++|+|++|+|||||++.+.+-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999754
No 427
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.81 E-value=0.018 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999863
No 428
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.80 E-value=0.014 Score=58.54 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+||+|++|||||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 429
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.79 E-value=0.011 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=10.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 557999999999999999998764
No 430
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.78 E-value=0.018 Score=51.35 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|.+|+|||||++.+.+-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4579999999999999999998753
No 431
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.77 E-value=0.015 Score=51.64 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.6
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+++.+-+.|+|.+|+|||||++.+.+..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34456789999999999999999988864
No 432
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.76 E-value=0.0028 Score=63.29 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
+..++++++++.+| +++|+|||||||||++++|.+
T Consensus 14 ~~~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp BTTCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHH
Confidence 34457788888764 899999999999999999997
No 433
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.76 E-value=0.015 Score=54.97 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
.++++|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999987
No 434
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.021 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHH
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~ 87 (421)
+++|+ ++.|.|++|+|||||+..++
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHH
Confidence 48999 99999999999999997654
No 435
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.73 E-value=0.019 Score=61.44 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=30.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeec
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYND 103 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllp--~~G~I~~Dg~~~ 103 (421)
++.+|.|.|.+||||||+++.|...+. ....+.+|+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 455999999999999999999998762 334677776543
No 436
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.72 E-value=0.018 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999865
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.68 E-value=0.014 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|- +|.|.|++||||||+++.|...+
T Consensus 23 ~~g~---~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGK---FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCC---EEEEECCC---CHHHHHHHHHHH
T ss_pred cCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4566 99999999999999999999877
No 438
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.68 E-value=0.018 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.|++|+|||++++.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999875
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.65 E-value=0.019 Score=53.49 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|.|.|++||||||+++.|...+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999877
No 440
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.64 E-value=0.023 Score=56.53 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=30.4
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg 100 (421)
+++|. ++.|.|++|||||||+..++... .....+.++.
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999 99999999999999998888764 3334556554
No 441
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.64 E-value=0.02 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.+-|++||||||+++.|...+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 442
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.62 E-value=0.015 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
++.|+|++||||||++..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3679999999999999999854
No 443
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.61 E-value=0.015 Score=59.69 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+|.++.++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46699999999999999999999876
No 444
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.61 E-value=0.017 Score=55.47 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
|..+.|.||+|+|||+|+++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999887
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.60 E-value=0.021 Score=50.99 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+-|+|+|.+|+|||||++.+.+..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 335679999999999999999998753
No 446
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.58 E-value=0.017 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||++.+++.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999876
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.0051 Score=59.63 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.4
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
|...+++.+...+..|..+ .+.|.||+|+||||+++++++.+
T Consensus 41 g~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLP-HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCC-EEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445555555666422 38999999999999999999886
No 448
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.53 E-value=0.02 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=25.0
Q ss_pred EEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 59 ~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
-+++|+ ++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 358899 9999999999999999988864
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.53 E-value=0.019 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+||.|+.||||||+++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 450
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.52 E-value=0.017 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|.+|||||||++.|.|.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999874
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.48 E-value=0.0098 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=5.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998875
No 452
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.45 E-value=0.013 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
+++-++|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999854
No 453
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=94.43 E-value=0.037 Score=49.67 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=72.3
Q ss_pred ccceeecCCCCCCchhhhhhhhcccCC--ceEEEEEeeecCCCCeEeeeeeeeceee-eEecc-cccccceeeeeeeccc
Q 014617 279 ETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSV-RLLGG-LMALGYTIATILKRSS 354 (421)
Q Consensus 279 ~~~~i~~~p~~~~~~~~~~~l~~~~~~--~~~~l~~~~~~~~~p~i~~~~~~f~v~~-~il~g-~~~~g~~~~~~~~r~~ 354 (421)
...|+|..-|.........++|.|..+ +...+++.|+..+.- . +++|+- .-+.. |..+||..+..+...-
T Consensus 40 ~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~-~-----e~~v~d~~~~~~iL~~LG~~~~~~v~K~R 113 (179)
T 3ghx_A 40 HEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC-E-----ASNIEDVSKVQSMLATLGYHPAFTIEKQR 113 (179)
T ss_dssp EEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE-E-----EEECSCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE-E-----EEEcCCHHHHHHHHHHCCCcEEEEEEEEE
Confidence 456899988887776667778887653 678888888876542 1 111110 01111 3589999999999999
Q ss_pred ceeecCcEEEEeehhcccCcceEEEeecc
Q 014617 355 HIFYDDRVCVKTDWLEQLNRKYVQVLFHL 383 (421)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (421)
.+|.-|.+.|.+|+.++++ .|+-|-...
T Consensus 114 ~~y~~~~~~i~LD~v~glG-~f~EIE~~~ 141 (179)
T 3ghx_A 114 SIYFVGKFHITVDHLTGLG-DFAEIAIMT 141 (179)
T ss_dssp EEEEETTEEEEEEEETTTE-EEEEEEEEE
T ss_pred EEEEECCEEEEEEccCCCc-cEEEEEEEc
Confidence 9999999999999999998 899998654
No 454
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.37 E-value=0.0061 Score=63.46 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=48.0
Q ss_pred ceEEEeehhhhhhhccCC--ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014617 159 SRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
||+.|++++ ...| .++++||||+++|+.....+. +++.+ |.++ ++++. +||++++|+++.
T Consensus 404 qrv~la~~l-----~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 404 SRVMLAVST-----VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp HHHHHHHHH-----HHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred HHHHHHHHH-----HhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence 888888877 6677 999999999999998766554 56655 7777 66665 699999997764
No 455
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.37 E-value=0.036 Score=54.03 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
-+.|.||+|+|||||+++++..+.....+.+++-
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~ 80 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 80 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH
Confidence 6889999999999999999988743445555543
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.36 E-value=0.011 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+..+-|+|+|.+|||||||++.+.+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34668999999999999999998864
No 457
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.33 E-value=0.026 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+-++|+|.+|+|||||++.+.+-.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998653
No 458
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.027 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..+-|+|+|++|+|||||++.+.+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998764
No 459
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.30 E-value=0.025 Score=54.96 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=30.4
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
..|+.+..-+.+|+ ++.|.|++|+|||||+..++...
T Consensus 56 ~~LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 56 TELDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555555579999 99999999999999999887654
No 460
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.28 E-value=0.023 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
No 461
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.25 E-value=0.022 Score=59.03 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcC
Q 014617 69 VGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 69 igIiGpSGSGKSTL~r~L~gll 90 (421)
+.|.||+|+|||||+++|++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7799999999999999999976
No 462
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.18 E-value=0.029 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.-+.|.||+|+|||||+++++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4478899999999999999999875
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.16 E-value=0.012 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+|||||+++|+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36799999999999999999875
No 464
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.09 E-value=0.029 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+||||++++++..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999888775
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.09 E-value=0.031 Score=50.53 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-|.|+|.+|+|||||++.+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.07 E-value=0.0076 Score=66.36 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
++.+.++. .+.+.||+|+|||||+++|++.+ ....+.+++
T Consensus 505 ~~~~~~~~---~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~ 544 (806)
T 1ypw_A 505 KFGMTPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 544 (806)
T ss_dssp CCCCCCCC---CCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCC
T ss_pred hcCCCCCc---eeEEECCCCCCHHHHHHHHHHHh-CCCEEEEec
Confidence 44556777 89999999999999999999987 233444444
No 467
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.05 E-value=0.019 Score=59.92 Aligned_cols=25 Identities=4% Similarity=0.061 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
.+|.++|.|||||||++++|+..+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999884
No 468
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.03 E-value=0.038 Score=54.10 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.6
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHh
Q 014617 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
.....+++.-+.+. |. -+.|.|+||+||||++..+..
T Consensus 133 a~~~~~H~~~v~~~-g~---gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEVF-GV---GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEET-TE---EEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEEC-CE---EEEEEcCCCCCHHHHHHHHHH
Confidence 34467788666654 44 599999999999999988765
No 469
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.01 E-value=0.025 Score=57.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||+++|++.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 470
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.98 E-value=0.036 Score=51.39 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.6
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|.++.++.+.|..|+|||||+..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45567799999999999999999998544
No 471
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.94 E-value=0.034 Score=51.66 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+|+|.|+.||||||+++.|+..+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 499999999999999999999876
No 472
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=93.92 E-value=0.068 Score=47.73 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=76.1
Q ss_pred ccceeecCCCCCCchhhhhhhhcc----cCCceEEEEEeeecCCCCeEeeeeeeeceeee-----Eecccccccceeeee
Q 014617 279 ETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-----LLGGLMALGYTIATI 349 (421)
Q Consensus 279 ~~~~i~~~p~~~~~~~~~~~l~~~----~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~-----il~g~~~~g~~~~~~ 349 (421)
...|+|...|+........+||.| +.++.+.+++.++..+.-+-+++ ++++.+. +..-|..+|+..+..
T Consensus 29 ~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~--E~e~~v~~~~~~~~~~L~~lgl~~~~~ 106 (183)
T 2een_A 29 IHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRL--EIEVEIQEDVDKYFELLDRLGFKEVLK 106 (183)
T ss_dssp EEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEE--EEEEEECSCHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEE--EEEEeecCCHHHHHHHHHHCCCeEEEE
Confidence 356999999988887777889999 77788999998886655544444 4444443 212234589999999
Q ss_pred eecccceeecC-cEEEEeehhcccCcceEEEeec
Q 014617 350 LKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVLFH 382 (421)
Q Consensus 350 ~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 382 (421)
+...-..|.-+ .+.|.+|+.+.++. |+-|-..
T Consensus 107 ~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e 139 (183)
T 2een_A 107 VVKTREKYYVEKGVTITLDEVEGLGK-FIEIETL 139 (183)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEE
T ss_pred EEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEe
Confidence 88888888887 89999999998875 8777753
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.035 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|.+|+|||||++.+.+.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 474
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.91 E-value=0.028 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+||||++++|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.86 E-value=0.019 Score=58.76 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+++|+|++|+||||++..|++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999986
No 476
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.80 E-value=0.023 Score=58.03 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl 89 (421)
.|+|+|.+|+|||||++.|.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999885
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.80 E-value=0.035 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|.++|.+||||||+++.|+..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 478
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.79 E-value=0.031 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.++++|.+|+|||||++.|.+..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 79999999999999999999875
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.79 E-value=0.034 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.+|.++|.+||||||+++.|+..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999998765
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.73 E-value=0.036 Score=53.21 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++.++++|.+|+|||||++.|.+.-
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 35689999999999999999999864
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.69 E-value=0.029 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHH-HHhc
Q 014617 65 GIILVGVAGPSGAGKTVFTEK-VLNF 89 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~-L~gl 89 (421)
..+-|+|+|.+|+|||||++. +.+.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 356799999999999999998 5554
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.69 E-value=0.03 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+|||||++.++..+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999876
No 483
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.48 E-value=0.044 Score=56.61 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.3
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++.+ ..+-+|+ .++|.|+||+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGG---KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTC---EEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCC---EEEEECCCCCCccHHHHHHHhhh
Confidence 44444 4456788 89999999999999999998765
No 484
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.47 E-value=0.039 Score=57.99 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+.++.+.|++||||||+++.|...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999866
No 485
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.45 E-value=0.039 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+||||+++.++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999887
No 486
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.51 E-value=0.014 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhc
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.+-++|+|.+|+|||||++.+.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 457999999999999999888754
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.40 E-value=0.046 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+..+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3389999999999999999999865
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.35 E-value=0.038 Score=51.07 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=24.0
Q ss_pred EecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 60 i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++.. .+.|.||.|+||||++.+|+..+
T Consensus 55 iPkkn---~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKN---CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCS---EEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCccc---EEEEECCCCCCHHHHHHHHHHHh
Confidence 34445 79999999999999999999876
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.22 E-value=0.04 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|.|-|+-||||||+++.|...+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78899999999999999999877
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.18 E-value=0.067 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp 91 (421)
-+.|.|++|+|||++++.|....+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 578999999999999999998873
No 491
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.16 E-value=0.053 Score=52.88 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD 99 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~D 99 (421)
.+.|.||+|+|||||++.++..+ .....+.+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 79999999999999999999887 333344443
No 492
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=0.052 Score=55.38 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
=+.+.||+|+|||+|+++|++.+ ..-.+.+++-
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~ 240 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGS 240 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecc
Confidence 58999999999999999999987 3335555543
No 493
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.12 E-value=0.048 Score=56.78 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECC
Q 014617 64 HGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDN 100 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~Dg 100 (421)
.++.+|+|+|++||||||++..|+..+ -....|..|-
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 346699999999999999999999554 1345565554
No 494
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.10 E-value=0.054 Score=53.52 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=28.7
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
|+.+.--+.+|+ ++.|.|++|+|||||+..++...
T Consensus 36 LD~~~gGl~~G~---LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 36 LDNYTSGFNKGS---LVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHCSBCTTC---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 333333469999 99999999999999999988765
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.08 E-value=0.047 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
.+.|.||+|+||||++++|+..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.08 E-value=0.046 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
-+.|.||+|+|||+|+++++...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999876
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.07 E-value=0.049 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 67 ~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.-+.|.||+|+|||||+++|+..+
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999887
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.06 E-value=0.074 Score=54.22 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
-+.|.||+|+|||||+++++..+.....+.++.-
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 6889999999999999999998743445555543
No 499
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.98 E-value=0.054 Score=55.16 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=29.5
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014617 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
.|+.+.--+++|+ ++.|+|++|+|||||+..++...
T Consensus 189 ~LD~~lgGl~~G~---l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGS---LNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTC---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444444478999 99999999999999999888765
No 500
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.98 E-value=0.063 Score=55.01 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014617 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
-+.+.||+|+||||++++|+..++ ...+.++.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~-~~~~~v~~ 83 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN-APFIKVEA 83 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC-CCceeecc
Confidence 488999999999999999999982 23444443
Done!