BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014618
         (421 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 5/148 (3%)

Query: 261 GLIDAAPWIRVPW---PFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPM 317
           G++D  P I   W   P  +  P F+      ++ A+ V + E  G     A       +
Sbjct: 200 GIVDTTPIINAHWFALPTLY-TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 258

Query: 318 PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFS 377
               L R +   G+  ++SG FG+   T+   EN G++A+TRV S  V+  +A F I  S
Sbjct: 259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLS 317

Query: 378 VLGKFGAVFASIPAPIVAALYCLFFAYV 405
            +GK  A    IP P++  +  L +  +
Sbjct: 318 CVGKLAAAIQMIPLPVMGGVSLLLYGVI 345



 Score = 31.6 bits (70), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 28  ITSPPPWPEAILLGFQHYIVMLGTTVLIPT--SLVPQMGGGNEEKAKVIQTLLFVAGLNT 85
           ++  PP  + I L  QH   M G TVL+P    + P              T+L   G+ T
Sbjct: 8   VSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINP-------------ATVLLFNGIGT 54

Query: 86  LLQSLFGT-RLPAVMGGSYTFV 106
           LL       ++PA +G S+ F+
Sbjct: 55  LLYLFICKGKIPAYLGSSFAFI 76


>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
           Alpha- Syntrophin
          Length = 263

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 6   APKADEPLPHPAKDQLPSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGG 65
           +P   EP P P   QL   +    +PP  PEA+LL  +   V       +  S+     G
Sbjct: 42  SPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAGGLGISIK----G 97

Query: 66  GNEEKAKVIQTLLFVAGLNTLLQSLF 91
           G E K  ++ + +F        ++LF
Sbjct: 98  GRENKMPILISKIFKGLAADQTEALF 123


>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
           (Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
          Length = 157

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 33  PWPEAILLGFQHYIVMLGTTVLIPTSLVP-QMGGGNEEKAKVIQ--TLLFVAGLNTLLQS 89
           PW + +  GF+  ++ + +  ++P   V       +E  A+ ++  T++ V G  TL ++
Sbjct: 21  PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPEN 80

Query: 90  LFGTRLPAVMGGSY 103
             G  L  + GG Y
Sbjct: 81  SEGVILTEITGGQY 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,574,913
Number of Sequences: 62578
Number of extensions: 457925
Number of successful extensions: 1105
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 10
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)