Query 014618
Match_columns 421
No_of_seqs 189 out of 1336
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 14:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 17.4 71 0.0052 27.7 5.4 36 53-90 46-81 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 14.5 3.2E+02 0.024 22.8 10.3 37 55-91 272-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 8.9 1.1E+02 0.0079 25.5 3.6 45 55-99 30-78 (417)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 2.1 5.9E+02 0.043 13.4 2.6 15 222-236 12-26 (32)
5 d1yuaa1 g.41.3.3 (A:1-65) Prok 1.7 2.6E+02 0.019 18.1 -0.0 30 1-30 1-31 (65)
6 d1xrda1 f.3.1.1 (A:1-52) Light 1.6 9.7E+02 0.071 14.4 2.7 16 363-378 11-26 (52)
7 d2craa1 a.4.1.1 (A:7-64) Homeo 1.5 7.9E+02 0.057 14.8 2.3 17 59-75 34-50 (58)
8 d1zs4a1 a.35.1.9 (A:4-81) Regu 1.5 4.8E+02 0.035 17.2 1.0 15 215-229 41-55 (78)
9 d1oyia_ a.4.5.19 (A:) dsRNA-bi 1.4 4.5E+02 0.033 16.0 0.7 13 23-35 46-59 (62)
10 d1p7ia_ a.4.1.1 (A:) Engrailed 1.4 7.7E+02 0.056 14.4 1.9 17 59-75 32-48 (53)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.35 E-value=71 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=27.7
Q ss_pred ehhhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014618 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (421)
Q Consensus 53 v~~p~il~~a~gl~~~~~~~~i~a~~~~~gi~tllq~~ 90 (421)
++.|.+ .+ .|+++.|.....+...+..++++++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344654 34 7999998888888888888888888876
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.51 E-value=3.2e+02 Score=22.83 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=26.5
Q ss_pred hhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 014618 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (421)
Q Consensus 55 ~p~il~~a~gl~~~~~~~~i~a~~~~~gi~tllq~~~ 91 (421)
.|..+.+..+.+..+.........+...+++++.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666667678888877777666667777777777653
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.88 E-value=1.1e+02 Score=25.48 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=33.5
Q ss_pred hhhHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 014618 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (421)
Q Consensus 55 ~p~il~~a~gl~~~~~~~~i~a~~~~~gi~tllq~~----~G~rlPiv~ 99 (421)
.|.-+.+..|+++.|...+.+...+...+++.+.+. +|.|..++.
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~ 78 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 355566668999998888888888888888888875 576665543
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.07 E-value=5.9e+02 Score=13.36 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 014618 222 FAVIFSVVIVWIYAH 236 (421)
Q Consensus 222 ~aiLigiv~g~~~a~ 236 (421)
.+...|+.+|.+.+.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 456667777766543
No 5
>d1yuaa1 g.41.3.3 (A:1-65) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=1.71 E-value=2.6e+02 Score=18.10 Aligned_cols=30 Identities=23% Similarity=0.547 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCcccccCC
Q 014618 1 MAGGAAPKADEPLPHPA-KDQLPSISYCITS 30 (421)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 30 (421)
|-|-++|..-+|.+.|- .-++.+-+|-+.|
T Consensus 1 ~NGe~aPpkmdPi~mpeL~C~K~dd~yvLRD 31 (65)
T d1yuaa1 1 MNGEVAPPKEDPVPLPELPCEKSDAYFVLRD 31 (65)
T ss_dssp CCCCSSCSCCCSEEEEEEECSSSSCEEEEEC
T ss_pred CCCCcCCCcCCCccCCCcceeeeccEEEeec
Confidence 55777777777777665 3344455554444
No 6
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.56 E-value=9.7e+02 Score=14.44 Aligned_cols=16 Identities=19% Similarity=0.357 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHh
Q 014618 363 RRVVQISAGFMIFFSV 378 (421)
Q Consensus 363 r~~~~~a~~~ll~l~~ 378 (421)
|++.+.-++++.++++
T Consensus 11 Rr~lva~~~fL~~LAl 26 (52)
T d1xrda1 11 RQALVGLATFLFVLAL 26 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555544
No 7
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.50 E-value=7.9e+02 Score=14.80 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=12.5
Q ss_pred hhhhcCCChHHHHHHHH
Q 014618 59 LVPQMGGGNEEKAKVIQ 75 (421)
Q Consensus 59 l~~a~gl~~~~~~~~i~ 75 (421)
|+...|++..+...|++
T Consensus 34 LA~~l~l~~~qV~vWFq 50 (58)
T d2craa1 34 ISAATSLSERQITIWFQ 50 (58)
T ss_dssp HHHHTCCCHHHHHHHHH
T ss_pred HHHHcCCCHHHeeeccc
Confidence 45557899888777765
No 8
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=1.47 E-value=4.8e+02 Score=17.21 Aligned_cols=15 Identities=13% Similarity=0.574 Sum_probs=10.3
Q ss_pred cccchhhHHHHHHHH
Q 014618 215 GKNIFDRFAVIFSVV 229 (421)
Q Consensus 215 ~~~~~~~~aiLigiv 229 (421)
+++++.+.+++++++
T Consensus 41 K~~f~~q~smlLAvL 55 (78)
T d1zs4a1 41 KRDWIPKFSMLLAVL 55 (78)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 345677888887764
No 9
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=1.38 E-value=4.5e+02 Score=15.99 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=10.0
Q ss_pred CcccccCCCCC-hH
Q 014618 23 SISYCITSPPP-WP 35 (421)
Q Consensus 23 ~~~~~~~~~~~-~~ 35 (421)
...|..||-|| |.
T Consensus 46 amvy~s~d~pprw~ 59 (62)
T d1oyia_ 46 AMVYSSDDIPPRWF 59 (62)
T ss_dssp TSSEECSSSSCEEE
T ss_pred hheecCCCCCCccc
Confidence 46788899888 54
No 10
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=1.36 E-value=7.7e+02 Score=14.37 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=11.6
Q ss_pred hhhhcCCChHHHHHHHH
Q 014618 59 LVPQMGGGNEEKAKVIQ 75 (421)
Q Consensus 59 l~~a~gl~~~~~~~~i~ 75 (421)
|+...|++..+...|++
T Consensus 32 LA~~lgL~~~qV~vWFq 48 (53)
T d1p7ia_ 32 LSSELGLNEAQIKIWFQ 48 (53)
T ss_dssp HHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCChHHhhhccc
Confidence 44457888877777665
Done!