Query 014619
Match_columns 421
No_of_seqs 199 out of 689
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o70_A PHD finger protein 13; 99.6 5.7E-16 2E-20 121.5 2.4 62 114-191 6-67 (68)
2 1wep_A PHF8; structural genomi 99.5 2.4E-15 8.3E-20 120.8 1.4 69 118-199 3-73 (79)
3 1we9_A PHD finger family prote 99.4 6.1E-14 2.1E-18 108.0 2.2 56 124-192 3-59 (64)
4 3kqi_A GRC5, PHD finger protei 99.4 2.2E-14 7.5E-19 114.2 -1.6 58 122-192 5-62 (75)
5 1wem_A Death associated transc 99.3 4E-14 1.4E-18 112.8 -2.4 66 115-192 6-71 (76)
6 3o7a_A PHD finger protein 13 v 99.3 3.3E-13 1.1E-17 100.1 1.0 50 125-190 2-51 (52)
7 1wee_A PHD finger family prote 99.2 3.4E-12 1.2E-16 100.7 1.9 55 124-192 13-67 (72)
8 3lqh_A Histone-lysine N-methyl 99.1 1.1E-11 3.8E-16 114.5 1.9 68 126-199 1-71 (183)
9 2kgg_A Histone demethylase jar 99.1 6.8E-12 2.3E-16 93.1 -0.3 47 129-189 5-52 (52)
10 3kv5_D JMJC domain-containing 99.1 5.2E-12 1.8E-16 132.3 -2.0 64 116-192 26-89 (488)
11 1wew_A DNA-binding family prot 99.1 2.5E-11 8.6E-16 97.2 1.1 57 126-192 15-73 (78)
12 2rsd_A E3 SUMO-protein ligase 99.0 1.1E-10 3.9E-15 91.0 3.4 54 126-190 9-64 (68)
13 3c6w_A P28ING5, inhibitor of g 99.0 7.3E-11 2.5E-15 89.9 0.4 48 126-191 8-58 (59)
14 2g6q_A Inhibitor of growth pro 99.0 9.4E-11 3.2E-15 90.2 0.5 49 126-192 10-61 (62)
15 1wen_A Inhibitor of growth fam 98.9 3.2E-10 1.1E-14 89.5 3.2 49 126-192 15-66 (71)
16 3kv4_A PHD finger protein 8; e 98.9 3.2E-11 1.1E-15 125.0 -4.4 54 126-192 4-57 (447)
17 1weu_A Inhibitor of growth fam 98.9 3.5E-10 1.2E-14 93.3 2.5 49 126-192 35-86 (91)
18 2vnf_A ING 4, P29ING4, inhibit 98.9 2.6E-10 8.8E-15 87.1 0.3 48 126-191 9-59 (60)
19 1x4i_A Inhibitor of growth pro 98.9 2.6E-10 8.9E-15 89.7 0.1 49 126-192 5-56 (70)
20 2ri7_A Nucleosome-remodeling f 98.9 8.4E-11 2.9E-15 106.7 -3.3 54 126-192 7-60 (174)
21 2k16_A Transcription initiatio 98.8 3.9E-10 1.3E-14 89.2 0.4 53 125-192 16-69 (75)
22 2xb1_A Pygopus homolog 2, B-ce 98.8 2.2E-10 7.7E-15 96.8 -2.5 52 131-192 8-62 (105)
23 2jmi_A Protein YNG1, ING1 homo 98.8 1.8E-09 6.1E-14 89.0 1.9 46 126-189 25-74 (90)
24 2vpb_A Hpygo1, pygopus homolog 98.8 1.6E-10 5.6E-15 89.6 -4.1 53 128-190 10-65 (65)
25 2lv9_A Histone-lysine N-methyl 98.7 5.7E-09 2E-13 87.0 4.0 51 126-192 27-77 (98)
26 3rsn_A SET1/ASH2 histone methy 98.4 1.7E-07 5.8E-12 85.8 5.1 67 124-200 2-69 (177)
27 3pur_A Lysine-specific demethy 98.4 9.8E-08 3.3E-12 100.2 2.7 40 144-191 55-94 (528)
28 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.0 7.2E-07 2.5E-11 76.1 -0.4 40 146-192 1-45 (140)
29 4bbq_A Lysine-specific demethy 97.7 1E-05 3.5E-10 68.6 1.8 45 144-193 72-116 (117)
30 1f62_A Transcription factor WS 97.5 3E-05 1E-09 56.5 2.0 46 131-191 5-50 (51)
31 2e6r_A Jumonji/ARID domain-con 97.4 7.4E-05 2.5E-09 61.4 2.7 50 127-191 16-66 (92)
32 2puy_A PHD finger protein 21A; 97.2 9.9E-05 3.4E-09 55.7 1.8 48 126-191 4-52 (60)
33 3ny3_A E3 ubiquitin-protein li 97.1 0.00037 1.3E-08 55.3 3.7 52 52-103 14-66 (75)
34 3asl_A E3 ubiquitin-protein li 96.9 0.00056 1.9E-08 53.4 3.7 47 131-191 23-69 (70)
35 1mm2_A MI2-beta; PHD, zinc fin 96.9 0.00068 2.3E-08 51.4 3.9 48 127-192 9-57 (61)
36 2l43_A N-teminal domain from h 96.9 0.00027 9.2E-09 57.6 1.6 55 127-196 26-82 (88)
37 2l5u_A Chromodomain-helicase-D 96.8 0.00047 1.6E-08 52.3 2.4 47 127-191 11-58 (61)
38 2ku3_A Bromodomain-containing 96.6 0.00046 1.6E-08 54.1 0.7 50 127-191 16-66 (71)
39 2yql_A PHD finger protein 21A; 96.6 0.00092 3.2E-08 49.6 2.2 46 127-190 9-55 (56)
40 2e6s_A E3 ubiquitin-protein li 96.4 0.0025 8.7E-08 50.6 4.1 46 131-190 31-76 (77)
41 1xwh_A Autoimmune regulator; P 96.4 0.0011 3.8E-08 50.9 1.8 48 127-192 8-56 (66)
42 2yt5_A Metal-response element- 96.4 0.0011 3.7E-08 50.6 1.6 55 127-192 6-62 (66)
43 3shb_A E3 ubiquitin-protein li 96.3 0.0032 1.1E-07 50.1 3.8 39 144-190 38-76 (77)
44 3u5n_A E3 ubiquitin-protein li 96.2 0.0025 8.6E-08 59.1 3.3 47 128-192 8-55 (207)
45 4gne_A Histone-lysine N-methyl 96.2 0.0021 7.3E-08 54.2 2.5 44 127-189 15-60 (107)
46 3o36_A Transcription intermedi 96.1 0.003 1E-07 57.4 3.2 39 145-192 14-52 (184)
47 3nis_A E3 ubiquitin-protein li 96.1 0.0044 1.5E-07 50.0 3.7 51 52-102 18-71 (82)
48 2lri_C Autoimmune regulator; Z 95.9 0.0032 1.1E-07 48.6 2.1 38 145-191 22-59 (66)
49 2kwj_A Zinc finger protein DPF 95.4 0.006 2.1E-07 51.6 2.1 45 131-190 63-107 (114)
50 2ysm_A Myeloid/lymphoid or mix 95.3 0.0072 2.5E-07 50.6 2.3 48 129-191 56-104 (111)
51 3ask_A E3 ubiquitin-protein li 95.2 0.011 3.7E-07 56.0 3.4 39 144-190 186-224 (226)
52 1fp0_A KAP-1 corepressor; PHD 95.1 0.029 9.9E-07 45.7 5.3 47 127-191 25-72 (88)
53 1wev_A Riken cDNA 1110020M19; 95.1 0.0095 3.3E-07 48.3 2.3 54 127-192 16-73 (88)
54 3v43_A Histone acetyltransfera 95.0 0.017 5.7E-07 48.6 3.8 47 131-191 66-112 (112)
55 2ro1_A Transcription intermedi 93.3 0.038 1.3E-06 50.6 2.8 38 145-191 12-49 (189)
56 2ysm_A Myeloid/lymphoid or mix 88.2 0.34 1.2E-05 40.2 3.5 46 129-189 9-55 (111)
57 3v43_A Histone acetyltransfera 81.2 0.084 2.9E-06 44.3 -3.5 40 144-189 23-62 (112)
58 2yvr_A Transcription intermedi 64.7 2.8 9.6E-05 29.3 1.7 28 55-86 18-45 (50)
59 2kwj_A Zinc finger protein DPF 61.8 3.9 0.00013 34.1 2.3 22 144-165 20-41 (114)
60 1wil_A KIAA1045 protein; ring 61.5 5.8 0.0002 32.0 3.1 55 144-198 26-83 (89)
61 3ddt_A E3 ubiquitin-protein li 59.0 4.3 0.00015 28.2 1.8 27 56-86 19-46 (48)
62 2did_A Tripartite motif protei 58.9 5.1 0.00018 28.4 2.2 28 55-86 19-47 (53)
63 2csv_A Tripartite motif protei 51.3 7.3 0.00025 29.4 2.1 28 55-86 29-56 (72)
64 2d8u_A Ubiquitin ligase TRIM63 50.6 4.2 0.00014 29.8 0.6 29 55-87 20-49 (64)
65 2dja_A Midline-2; tripartite m 50.3 5.3 0.00018 30.9 1.2 29 55-87 30-59 (84)
66 2yrg_A Tripartite motif-contai 47.9 10 0.00035 27.7 2.4 29 55-87 25-54 (59)
67 2egm_A Tripartite motif-contai 42.0 9 0.00031 27.8 1.2 27 55-85 29-56 (57)
68 1fre_A Nuclear factor XNF7; zi 40.9 5.6 0.00019 26.7 -0.0 26 56-85 15-41 (42)
69 2lbm_A Transcriptional regulat 39.2 7.3 0.00025 34.1 0.4 52 127-191 63-117 (142)
70 1v5n_A PDI-like hypothetical p 36.4 23 0.00078 28.2 2.9 23 144-166 58-80 (89)
71 2kmu_A ATP-dependent DNA helic 33.4 20 0.00067 26.6 1.9 31 382-412 6-38 (56)
72 2l2l_B Methyl-CPG-binding doma 33.1 29 0.001 23.5 2.5 19 401-419 6-24 (36)
73 2kd1_A DNA integration/recombi 32.9 38 0.0013 26.2 3.8 16 401-416 50-65 (118)
74 2ly8_A Budding yeast chaperone 31.7 29 0.00099 29.5 2.9 28 381-408 69-106 (121)
75 4rxn_A Rubredoxin; electron tr 30.7 20 0.00068 26.3 1.5 11 180-190 34-44 (54)
76 2kj5_A Phage integrase; GFT PS 29.6 51 0.0017 25.4 4.0 30 387-416 33-65 (116)
77 3viq_B Mating-type switching p 29.4 22 0.00076 28.5 1.7 37 373-409 41-77 (85)
78 1e8j_A Rubredoxin; iron-sulfur 29.1 59 0.002 23.4 3.8 11 180-190 34-44 (52)
79 2kkv_A Integrase; protein stru 29.0 41 0.0014 26.4 3.3 31 386-416 32-65 (121)
80 2j9w_A VPS28, VPS28-PROV prote 28.5 80 0.0027 26.0 5.0 31 386-416 58-91 (102)
81 2khv_A Phage integrase; soluti 27.9 74 0.0025 24.4 4.7 17 400-416 45-61 (106)
82 1s24_A Rubredoxin 2; electron 26.9 42 0.0014 27.0 2.9 45 145-191 33-77 (87)
83 2kj8_A Putative prophage CPS-5 26.1 71 0.0024 24.9 4.3 17 400-416 48-64 (118)
84 2jun_A Midline-1; B-BOX, TRIM, 25.3 24 0.00081 27.9 1.2 28 55-86 71-99 (101)
85 2kkp_A Phage integrase; SAM-li 24.6 55 0.0019 25.1 3.3 30 387-416 35-67 (117)
86 2xzl_A ATP-dependent helicase 24.6 47 0.0016 36.4 3.8 61 126-198 13-87 (802)
87 2kn9_A Rubredoxin; metalloprot 24.4 52 0.0018 26.0 3.0 43 147-191 27-69 (81)
88 1dx8_A Rubredoxin; electron tr 24.2 75 0.0025 24.3 3.8 45 146-192 6-50 (70)
89 3lys_A Prophage PI2 protein 01 22.8 85 0.0029 24.3 4.1 28 388-416 38-65 (112)
90 1k9u_A Polcalcin PHL P 7; poll 22.3 53 0.0018 23.5 2.6 26 388-413 39-66 (78)
91 2wjy_A Regulator of nonsense t 22.3 50 0.0017 36.2 3.5 62 125-198 7-82 (800)
92 2jrp_A Putative cytoplasmic pr 21.9 42 0.0014 26.6 2.0 29 52-84 30-61 (81)
93 2kwq_A Protein MCM10 homolog; 21.5 83 0.0029 25.5 3.7 42 54-100 14-57 (92)
94 3nrw_A Phage integrase/site-sp 20.6 1.1E+02 0.0036 24.1 4.3 51 366-416 16-68 (117)
95 3ql9_A Transcriptional regulat 20.0 19 0.00064 31.0 -0.4 42 144-191 66-111 (129)
No 1
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.57 E-value=5.7e-16 Score=121.48 Aligned_cols=62 Identities=24% Similarity=0.491 Sum_probs=45.9
Q ss_pred CCCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 114 VENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 114 ~~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
.++++|.||+++.++||+|+++|+ .++||||+.|++|||..|||++.. + . .+.|+|+.|...
T Consensus 6 ~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~---~---~----~~~~~C~~C~~s 67 (68)
T 3o70_A 6 HHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS---N---V----PEVFVCQKCRDS 67 (68)
T ss_dssp --------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT---S---C----CSSCCCHHHHTC
T ss_pred cCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc---c---C----CCcEECCCCCCC
Confidence 467899999999999999999973 478999999999999999999652 1 1 358999999753
No 2
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.51 E-value=2.4e-15 Score=120.84 Aligned_cols=69 Identities=32% Similarity=0.771 Sum_probs=55.0
Q ss_pred cCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC--ccc
Q 014619 118 ENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC--SFL 195 (421)
Q Consensus 118 ~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~--~fL 195 (421)
.-.|++|...+||+|++||+ + .++||||+.|++|||..||+++.. .... ++.|+|+.|..+. +++
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~~~~~~~ 69 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYN-V----NHFMIECGLCQDWFHGSCVGIEEE----NAVD----IDIYHCPDCEAVFGPSIM 69 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCC-S----SSCEEEBTTTCCEEEHHHHTCCHH----HHTT----CSBBCCTTTTTTSCSCBC
T ss_pred CCccCccCCccEEEcCCccC-C----CCceEEcCCCCCcEEeeecCcccc----cccC----CCeEECCCcccccCCCce
Confidence 45689999999999999983 3 479999999999999999999642 1122 5799999999765 566
Q ss_pred cccc
Q 014619 196 STYP 199 (421)
Q Consensus 196 ~~y~ 199 (421)
+++.
T Consensus 70 K~~~ 73 (79)
T 1wep_A 70 KNWH 73 (79)
T ss_dssp CCCC
T ss_pred eeec
Confidence 6554
No 3
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.40 E-value=6.1e-14 Score=108.03 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=45.4
Q ss_pred CCCcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 124 NFKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 124 Nf~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
+..+.|| +|++||+ + .++||||+.|++|||..|||++.. ..+. ...|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~-~----~~~mI~Cd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYA-A----DEFWICCDLCEMWFHGKCVKITPA----RAEH----IKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCC-S----SSCEEECSSSCCEEETTTTTCCTT----GGGG----CSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccC-C----CCCEEEccCCCCCCCccccCcChh----HhcC----CCcEECCCCcCcC
Confidence 5678999 9999994 3 479999999999999999999642 1222 5789999998765
No 4
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=2.2e-14 Score=114.22 Aligned_cols=58 Identities=33% Similarity=0.789 Sum_probs=46.5
Q ss_pred CCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 122 NHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 122 n~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
+.|..++||+|++|| |+ .++||||+.|++|||..|||++.. .... .+.|+|+.|..+.
T Consensus 5 ~~~~~~~yCiC~~~~-~~----~~~MI~Cd~C~~WfH~~Cvg~~~~----~~~~----~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 5 SMATVPVYCVCRLPY-DV----TRFMIECDACKDWFHGSCVGVEEE----EAPD----IDIYHCPNCEKTH 62 (75)
T ss_dssp TTCCCCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCTT----TGGG----BSSCCCHHHHHHH
T ss_pred CCCCCeeEEECCCcC-CC----CCCEEEcCCCCCCEeccccccccc----ccCC----CCEEECCCCcccC
Confidence 456789999999998 33 479999999999999999999642 1122 5789999998653
No 5
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.33 E-value=4e-14 Score=112.81 Aligned_cols=66 Identities=32% Similarity=0.731 Sum_probs=49.3
Q ss_pred CCccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 115 ENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 115 ~n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
.|+.|.|++| ++||+|++||+ .++||||+.|++|||..|||++.. + ...-......|+|+.|..+.
T Consensus 6 ~~e~~~~d~~--~~~C~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~~~---~-~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 6 SGECEVYDPN--ALYCICRQPHN------NRFMICCDRCEEWFHGDCVGISEA---R-GRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCCCSCCTT--CCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCCHH---H-HHHHHHHTCCCCCHHHHHHS
T ss_pred cCCccccCCC--CCEEECCCccC------CCCEEEeCCCCCcEeCeEEccchh---h-hhhccCCCCeEECcCCcCcc
Confidence 4567889988 79999999984 468999999999999999999642 1 00000003689999997543
No 6
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=100.13 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=41.4
Q ss_pred CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 125 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 125 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
|..+||+|++|++ .++||||+.|++|||..|||++.. + . .+.|+|+.|..
T Consensus 2 ~d~~~C~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~---~---~----~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS---N---V----PEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCT------TCCEEECTTTCCEEETTTTTCCGG---G---C----CSSCCCHHHHT
T ss_pred CcCeEEEeCCcCC------CCCEEEcCCCCccccccccCCCcc---c---C----CCcEECcCCCC
Confidence 6789999999973 479999999999999999999642 1 1 35899999964
No 7
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.20 E-value=3.4e-12 Score=100.71 Aligned_cols=55 Identities=27% Similarity=0.587 Sum_probs=43.1
Q ss_pred CCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 124 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 124 Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
+-..+||+|+++|+| ..+||||+.|++|||..|||++... .. ...|+|+.|..+.
T Consensus 13 ~~~~~~C~C~~~~~~-----g~~mI~Cd~C~~W~H~~Cvg~~~~~-----~~----~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINNAD-----AL----PSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCTTS-----CC----CSCCCCHHHHHHC
T ss_pred CCcceEeeCCCccCC-----CCcEEECCCCCCccCCeeeccCccc-----cC----CCcEECCCccCCC
Confidence 446789999999742 3589999999999999999996421 12 4689999997643
No 8
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.12 E-value=1.1e-11 Score=114.46 Aligned_cols=68 Identities=22% Similarity=0.509 Sum_probs=48.9
Q ss_pred CcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCC--CCCccCeeeccCccCCCccccccc
Q 014619 126 KGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDE--GEPVYEDFICKACSAVCSFLSTYP 199 (421)
Q Consensus 126 ~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~--~~~~~~~fiC~~C~~~~~fL~~y~ 199 (421)
.|.|| +|+++|+ +++. ...||||+.|++|||+.|+|++.. ..+. ..|....|+|+.|..+.+.+++|+
T Consensus 1 ~G~~CpiC~k~Y~-~~~~-~~~MIqCd~C~~W~H~~Cvgi~~~----~~e~~~~~pe~~~y~Cp~C~~~~~~~~~~~ 71 (183)
T 3lqh_A 1 SGNFCPLCDKCYD-DDDY-ESKMMQCGKCDRWVHSKCENLSDE----MYEILSNLPESVAYTCVNCTERHPAEWRLA 71 (183)
T ss_dssp -CCBCTTTCCBCT-TCCT-TCCEEECTTTCCEEEGGGSSCCHH----HHHHHHHSHHHHCCCCTTTCCSSSCHHHHH
T ss_pred CcCcCCCCcCccC-Cccc-CCCeEECCCCCcccchhccccCHH----HHHHhhcCCCCCeeECcCCCCCCCHHHHHH
Confidence 37899 7999996 3321 367999999999999999999531 0000 000134899999999999888775
No 9
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.10 E-value=6.8e-12 Score=93.06 Aligned_cols=47 Identities=38% Similarity=0.960 Sum_probs=36.7
Q ss_pred eEEeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014619 129 YCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 189 (421)
Q Consensus 129 yC~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~ 189 (421)
.|+|++||+ + .+.||||+ .|++|||..|||++.. + .. ...|+|+.|.
T Consensus 5 cc~C~~p~~-~----~~~mI~Cd~~C~~WfH~~Cvgl~~~---~--~~----~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCK-D----KVDWVQCDGGCDEWFHQVCVGVSPE---M--AE----NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCC-T----TCCEEECTTTTCCEEETTTTTCCHH---H--HH----HSCCCCSCC-
T ss_pred CCCCcCccC-C----CCcEEEeCCCCCccCcccccCCCcc---c--cC----CCCEECCCCC
Confidence 478999994 2 47899999 9999999999999642 1 11 3689999984
No 10
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.09 E-value=5.2e-12 Score=132.30 Aligned_cols=64 Identities=33% Similarity=0.750 Sum_probs=48.7
Q ss_pred CccCcCCCCCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 116 NAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 116 n~~N~Yn~Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
+..+.|++|..++||+|++|| |+ .++||||+.|++|||..|||++.. ..+. .+.|+|+.|..+.
T Consensus 26 ~~~~s~~~~~~~~yC~C~~~~-d~----~~~MIqCd~C~~WfH~~Cvgl~~~----~~~~----~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 26 PGRASAPPPPPPVYCVCRQPY-DV----NRFMIECDICKDWFHGSCVGVEEH----HAVD----IDLYHCPNCAVLH 89 (488)
T ss_dssp ------CCCCCCEETTTTEEC-CT----TSCEEEBTTTCCEEEHHHHTCCGG----GGGG----EEEBCCHHHHHHH
T ss_pred CCCCCCcCCCCCeEEeCCCcC-CC----CCCeEEccCCCCceeeeecCcCcc----cccC----CCEEECCCCcCCc
Confidence 345689999999999999998 44 489999999999999999999642 2223 6899999998554
No 11
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.06 E-value=2.5e-11 Score=97.21 Aligned_cols=57 Identities=32% Similarity=0.638 Sum_probs=42.9
Q ss_pred CcceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|+++.+ .++||||+ .|..|||..|||++.. +.. ........|+|+.|..+.
T Consensus 15 ~~~~CiC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~---~~~-~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDK---PMD-GNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCT---TTC-SCSCSCSSCCCHHHHHCC
T ss_pred CCEEeECCCcCC------CCCEEEECCccCCccccCEEEccccc---ccc-ccccCCCCEECCCCCccc
Confidence 688999999942 47999999 9999999999999753 110 000125789999997543
No 12
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.02 E-value=1.1e-10 Score=91.04 Aligned_cols=54 Identities=28% Similarity=0.591 Sum_probs=40.0
Q ss_pred CcceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
..+||+|+.++. .++||||+ .|+.|||..|||++.. |.... ...+.|+|+.|..
T Consensus 9 ~~v~C~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~---~~~~~--~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDK---PGESA--EVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSS---TTSCC--CCCSSCCCHHHHH
T ss_pred CCEEeECCCCcC------CCCEEEECCCCCCCeEchhhCCCCcc---ccccc--CCCCcEECcCccC
Confidence 358999998852 47999999 5999999999999653 11111 1146899999964
No 13
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.97 E-value=7.3e-11 Score=89.90 Aligned_cols=48 Identities=31% Similarity=0.755 Sum_probs=39.3
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+||+|++++ .++||+|+. |. +|||..|||++. .| -..|+|+.|..+
T Consensus 8 e~~yC~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvgl~~---~p--------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYCLCHQVS-------YGEMIGCDNPDCPIEWFHFACVDLTT---KP--------KGKWFCPRCVQE 58 (59)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CC--------SSCCCCHHHHCC
T ss_pred CCcEEECCCCC-------CCCeeEeeCCCCCCCCEecccCCccc---CC--------CCCEECcCccCc
Confidence 57899999986 368999999 77 899999999964 23 246999999764
No 14
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.95 E-value=9.4e-11 Score=90.18 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=39.5
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|++++ .++||+|+.|+ +|||..|||++.. | ...|+|+.|..+.
T Consensus 10 e~~yC~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~~---p--------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 10 EPTYCLCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTYK---P--------KGKWYCPKCRGDN 61 (62)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSSC---C--------SSCCCCHHHHTCC
T ss_pred CCcEEECCCCC-------CCCeeeeeCCCCCcccEecccCCcCcC---C--------CCCEECcCcccCC
Confidence 57899999985 36899999954 9999999999642 2 3579999997653
No 15
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.94 E-value=3.2e-10 Score=89.46 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=40.2
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|++++ .++||+|+. |. +|||..||||+. .| ...|+|+.|..+.
T Consensus 15 ~~~~C~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvgl~~---~p--------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQES 66 (71)
T ss_dssp SCCCSTTCCCS-------CSSEECCSCSSCSCCCEETTTTTCSS---CC--------SSCCCCTTTSSCS
T ss_pred CCCEEECCCCC-------CCCEeEeeCCCCCCccEecccCCcCc---CC--------CCCEECCCCCccc
Confidence 67899999986 368999999 77 899999999964 23 2469999998654
No 16
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.91 E-value=3.2e-11 Score=125.01 Aligned_cols=54 Identities=35% Similarity=0.910 Sum_probs=44.1
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|++|| |+ .++||||+.|++|||+.|||++.. .... .+.|+|+.|..+.
T Consensus 4 ~~~yCiC~~~~-d~----~~~MIqCD~C~~WfH~~CVgi~~~----~~~~----~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPY-DV----TRFMIECDMCQDWFHGSCVGVEEE----KAAD----IDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEEC-CT----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----EEECCCHHHHHHH
T ss_pred CCeEEeCCCcC-CC----CCCeEEcCCCCcccccccCCcCcc----cccC----CCEEECCCCcccc
Confidence 47899999998 44 589999999999999999999642 1223 6899999998655
No 17
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.91 E-value=3.5e-10 Score=93.32 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=40.3
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|++++ .++||+|+. |. +|||..||+|+. .| ...|+|+.|..+.
T Consensus 35 e~~yCiC~~~~-------~g~MI~CD~~dC~~~WfH~~CVgl~~---~p--------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBC-------CSCCCCCSCSSCSCCCCCSTTTTCSS---CC--------CSSCCCTTTCCCC
T ss_pred CCcEEECCCCC-------CCCEeEecCCCCCCCCEecccCCcCc---CC--------CCCEECcCccCcC
Confidence 67999999986 368999999 76 999999999964 23 2479999998654
No 18
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.87 E-value=2.6e-10 Score=87.08 Aligned_cols=48 Identities=35% Similarity=0.829 Sum_probs=38.6
Q ss_pred CcceEEeCCCCCCCCcccccceeeccc--cC-ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCI--CE-DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~--CE-DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+||+|++++ .++||+|+. |. +|||..|||++. .| ...|+|+.|..+
T Consensus 9 e~~~C~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvgl~~---~p--------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT---KP--------RGKWFCPRCSQE 59 (60)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS---CC--------SSCCCCHHHHC-
T ss_pred CCCEEECCCcC-------CCCEEEeCCCCCCCceEehhcCCCCc---CC--------CCCEECcCccCc
Confidence 57899999985 368999999 66 999999999864 23 246999999764
No 19
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=2.6e-10 Score=89.72 Aligned_cols=49 Identities=33% Similarity=0.765 Sum_probs=39.9
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+||+|++++ .++||||+.|+ +|||..||||+.. | ...|+|+.|..+.
T Consensus 5 ~~~yC~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl~~~---p--------~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYCICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGLTEA---P--------KGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCSTTSCCC-------CSSEECCSCTTCSCCCEEHHHHTCSSC---C--------SSCCCCHHHHHHH
T ss_pred CCeEEEcCCCC-------CCCEeEeCCCCCCccCCcccccccCcC---C--------CCCEECCCCCccc
Confidence 57899999985 36999999974 9999999999642 2 3579999997543
No 20
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.86 E-value=8.4e-11 Score=106.72 Aligned_cols=54 Identities=24% Similarity=0.757 Sum_probs=43.0
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
.+.||+|++||. + .+.||||+.|++|||..|+|++.. ..+. .+.|+|+.|..+.
T Consensus 7 ~~~~C~C~~~~~-~----~~~mi~Cd~C~~WfH~~Cv~~~~~----~~~~----~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYCICKTPED-E----SKFYIGCDRCQNWYHGRCVGILQS----EAEL----IDEYVCPQCQSTE 60 (174)
T ss_dssp CCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTCCHH----HHTT----CSSCCCHHHHHHH
T ss_pred CCcEeeCCCCCC-C----CCCEeECCCCCchhChhhcCCchh----hccC----ccCeecCCCcchh
Confidence 578999999983 3 578999999999999999998542 1122 5789999998653
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.84 E-value=3.9e-10 Score=89.25 Aligned_cols=53 Identities=30% Similarity=0.714 Sum_probs=41.4
Q ss_pred CCcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 125 FKGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 125 f~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
-.+.|| +|++++. .+.||+|+.|+.|||..|||++.. +. . ...|+|+.|..+.
T Consensus 16 ~~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~~~---~~--~----~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIMAA---PP--E----EMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCSSC---CC--S----SSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCCcc---CC--C----CCCEEChhccCch
Confidence 357799 9999973 368999999999999999999642 11 1 3579999997653
No 22
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.79 E-value=2.2e-10 Score=96.79 Aligned_cols=52 Identities=23% Similarity=0.555 Sum_probs=38.4
Q ss_pred EeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCCCCCC--CCCCCCccCeeeccCccCCC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPR--DDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clgl~~~~~~p~--~~~~~~~~~~fiC~~C~~~~ 192 (421)
+|++||+ + .+.||||+ .|++|||..||||++.. ... .+. ...|+|+.|..+.
T Consensus 8 iC~~p~~-~----~~~mi~Cdd~C~~WfH~~CVglt~~~-~~~i~~~~----~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVN-D----DQDAILCEASCQKWFHRECTGMTESA-YGLLTTEA----SAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCC-T----TSCEEECTTTTCCEEEGGGTTCCHHH-HHHHHHCT----TEEECCHHHHHTT
T ss_pred CCCCccC-C----CCCEEEecCCcccccccccCCcCHHH-HHhhccCC----CCCEECccccCcC
Confidence 7999995 3 36899998 99999999999996420 000 011 3689999998764
No 23
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.76 E-value=1.8e-09 Score=88.97 Aligned_cols=46 Identities=30% Similarity=0.748 Sum_probs=37.9
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccC---ceecccCCCCCCCCCCCCCCCCCCccCeeeccC-cc
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICE---DWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKA-CS 189 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CE---DWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~-C~ 189 (421)
..+||+|++++ .++||+|+.|+ +|||..||||+. .| ...|+|+. |.
T Consensus 25 ~~~yCiC~~~~-------~g~MI~CD~c~C~~eWfH~~CVgl~~---~p--------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 25 EEVYCFCRNVS-------YGPMVACDNPACPFEWFHYGCVGLKQ---AP--------KGKWYCSKDCK 74 (90)
T ss_dssp CSCCSTTTCCC-------SSSEECCCSSSCSCSCEETTTSSCSS---CT--------TSCCCSSHHHH
T ss_pred CCcEEEeCCCC-------CCCEEEecCCCCccccCcCccCCCCc---CC--------CCCccCChhhc
Confidence 57899999985 25799999977 999999999964 23 24799999 86
No 24
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.76 E-value=1.6e-10 Score=89.64 Aligned_cols=53 Identities=21% Similarity=0.496 Sum_probs=38.4
Q ss_pred ceEEeCCCCCCCCcccccceeecc-ccCceecccCCCCCCCCCCCC--CCCCCCccCeeeccCccC
Q 014619 128 VYCTCNRPYPDPDVEEQVEMIQCC-ICEDWFHEEHIGLEPSDEIPR--DDEGEPVYEDFICKACSA 190 (421)
Q Consensus 128 ~yC~C~rpypdp~~e~~~~MiQC~-~CEDWfH~~Clgl~~~~~~p~--~~~~~~~~~~fiC~~C~~ 190 (421)
..++|++||+ + ..+||||+ .|++|||..||||++.. ... .+. ...|+|+.|.+
T Consensus 10 ~C~~C~~p~~-~----~~~mI~CD~~C~~WfH~~Cvglt~~~-~~~l~~e~----~~~w~C~~C~~ 65 (65)
T 2vpb_A 10 PCGICTNEVN-D----DQDAILCEASCQKWFHRICTGMTETA-YGLLTAEA----SAVWGCDTCMA 65 (65)
T ss_dssp BCTTTCSBCC-T----TSCEEEBTTTTCCEEEHHHHTCCHHH-HHHHHHCT----TEEECCHHHHC
T ss_pred cCccCCCccC-C----CCCeEecccCccccCchhccCCCHHH-HHHhhccC----CCcEECcCccC
Confidence 3468999995 4 47999999 99999999999996420 000 011 34899999963
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.73 E-value=5.7e-09 Score=87.02 Aligned_cols=51 Identities=24% Similarity=0.591 Sum_probs=40.6
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+.|+|+.++. .+.||||+.|..|||..||+++.. .+ .+.|+|+.|..+.
T Consensus 27 d~vrCiC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~~~-~~---------p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 27 DVTRCICGFTHD------DGYMICCDKCSVWQHIDCMGIDRQ-HI---------PDTYLCERCQPRN 77 (98)
T ss_dssp CBCCCTTSCCSC------SSCEEEBTTTCBEEETTTTTCCTT-SC---------CSSBCCTTTSSSC
T ss_pred CCEEeECCCccC------CCcEEEcCCCCCcCcCcCCCCCcc-CC---------CCCEECCCCcCCC
Confidence 367899999863 479999999999999999998532 11 2469999997654
No 26
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.42 E-value=1.7e-07 Score=85.84 Aligned_cols=67 Identities=18% Similarity=0.389 Sum_probs=44.0
Q ss_pred CCCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC-cccccccc
Q 014619 124 NFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC-SFLSTYPQ 200 (421)
Q Consensus 124 Nf~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~-~fL~~y~~ 200 (421)
|-...||+|+.|.+ ....|+||..|..|||+.|+.....+-+|- +- +..|+|..|.... .++.|-+.
T Consensus 2 n~~~~yCYCG~~~~-----~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~-~~----fY~F~C~~C~~~g~E~f~R~~~ 69 (177)
T 3rsn_A 2 DTQAGSVDEENGRQ-----LGEVELQCGICTKWFTADTFGIDTSSCLPF-MT----NYSFHCNVCHHSGNTYFLRKQA 69 (177)
T ss_dssp ---------CTTCC-----TTSCEEECTTTCCEEEGGGGTCCCTTCCTT-CC----SEEEECTTTSTTSSCEEEECCC
T ss_pred CCeeeEEEcCCCCC-----CCceeEeeccccceecHHHhcccccCcccc-ce----eEEEEccccCCCCcceeEeccC
Confidence 44567999999863 257899999999999999998654322332 23 8999999999865 77776543
No 27
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.37 E-value=9.8e-08 Score=100.20 Aligned_cols=40 Identities=33% Similarity=0.686 Sum_probs=33.3
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+||||+.|++|||+.|||+++. .++. .+.|+||.|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~----~a~~----~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQF----EYYL----YEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGG----GTTT----EEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChh----HhcC----CCeEECcCCcCC
Confidence 479999999999999999999652 2334 789999999864
No 28
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.99 E-value=7.2e-07 Score=76.11 Aligned_cols=40 Identities=25% Similarity=0.705 Sum_probs=30.0
Q ss_pred ceeeccccCceecccCCCCCCC-----CCCCCCCCCCCccCeeeccCccCCC
Q 014619 146 EMIQCCICEDWFHEEHIGLEPS-----DEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 146 ~MiQC~~CEDWfH~~Clgl~~~-----~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
-||||++|++|||..|++++.. ..+|. ...+.|+.|..+.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~-------~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPE-------SVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCT-------TTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccc-------cceeeCccccccc
Confidence 3999999999999999999641 12231 3479999997643
No 29
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.69 E-value=1e-05 Score=68.58 Aligned_cols=45 Identities=18% Similarity=0.541 Sum_probs=32.2
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCCc
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVCS 193 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~~ 193 (421)
...||||.+|++|||..|+++... .++..+. .+.|.|+.|....|
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~-~~~~~~~----~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGE-GLLNEEL----PNCWECPKCYQEDS 116 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCC-CEECSSS----SSEEECTTTC----
T ss_pred CcceEEeeecCCeEECCCCCCCcc-ccccccC----CCCeECCCCcCCCC
Confidence 467999999999999999998643 2333333 67899999987654
No 30
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.53 E-value=3e-05 Score=56.50 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=33.5
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+|+++.. .+.||.|+.|..|||..|++.+.. .+| ...|+|+.|...
T Consensus 5 vC~~~~~------~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P--------~g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGE------DDKLILCDECNKAFHLFCLRPALY-EVP--------DGEWQCPACQPA 50 (51)
T ss_dssp TTCCSSC------CSCCEECTTTCCEECHHHHCTTCC-SCC--------SSCCSCTTTSCC
T ss_pred CCCCCCC------CCCEEECCCCChhhCcccCCCCcC-CCC--------CCcEECcCcccc
Confidence 5776642 468999999999999999964221 233 247999999753
No 31
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=7.4e-05 Score=61.38 Aligned_cols=50 Identities=24% Similarity=0.465 Sum_probs=37.5
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+| +|+++.. ...||.|+.|..|||..||+.+-. .+| ...|+|+.|+.+
T Consensus 16 ~~~C~vC~~~~~------~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P--------~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDE------DDKLLFCDGCDDNYHIFCLLPPLP-EIP--------RGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGG------GGGCEECTTTCCEECSSSSSSCCS-SCC--------SSCCCCHHHHHH
T ss_pred CCCCccCCCcCC------CCCEEEcCCCCchhccccCCCCcc-cCC--------CCCcCCccCcCc
Confidence 3467 8998852 478999999999999999984321 234 247999999754
No 32
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.22 E-value=9.9e-05 Score=55.68 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=34.6
Q ss_pred CcceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 126 KGVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 126 ~g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
...+| +|+++ +.||.|+.|..|||..|++.+-. .+| ...|+|+.|..+
T Consensus 4 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---------SSCEECSSSSCEECGGGSSSCCS-SCC--------CSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---------CcEEEcCCCCcCEECCcCCCCcC-CCC--------CCceEChhccCh
Confidence 34556 67753 57999999999999999984321 233 247999999643
No 33
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=97.06 E-value=0.00037 Score=55.35 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=42.1
Q ss_pred ccceEeecCCCCCCCceEeccchhh-hcCCCceeEeecccceeeccCCCCCCC
Q 014619 52 RQAIFSCLSCAPEGNAGVCTACSLT-CHDGHEIVELWTKRNFRCDCGNSKFGE 103 (421)
Q Consensus 52 rQ~~y~C~tC~~~~~~gvC~~Cs~~-CH~~H~l~el~~kr~f~CDCG~~~~~~ 103 (421)
-.++|.|+||..+..-.||..|-.. =|.||++.-.....+..||||....+.
T Consensus 14 ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk 66 (75)
T 3ny3_A 14 GEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWK 66 (75)
T ss_dssp TCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBS
T ss_pred CCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcC
Confidence 3569999999988777999999877 699999964444457899999987653
No 34
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.94 E-value=0.00056 Score=53.37 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=34.0
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+|++... .+.||.|+.|..|||..||+.+-. .+|. -..|+|+.|..+
T Consensus 23 ~C~~~~~------~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQD------PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRND 69 (70)
T ss_dssp TTCCCSC------GGGEEECTTTCCEEEGGGSSSCCS-SCCS-------SSCCCCTTTSCC
T ss_pred CCCCcCC------CCCEEEcCCCCCceecccCCCCcC-CCCC-------CCCcCCcCccCc
Confidence 5666531 579999999999999999984221 2442 237999999753
No 35
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.92 E-value=0.00068 Score=51.39 Aligned_cols=48 Identities=23% Similarity=0.636 Sum_probs=35.1
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+| +|++. +.||.|+.|..|||..|++.+-. .+| ...|+|+.|+.+.
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~-~~p--------~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLP-EIP--------NGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCS-SCC--------SSCCCCTTTTTTC
T ss_pred CCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcC-cCC--------CCccCChhhcCch
Confidence 4556 57743 57999999999999999985321 233 2479999998654
No 36
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.90 E-value=0.00027 Score=57.59 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=39.2
Q ss_pred cceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC--cccc
Q 014619 127 GVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC--SFLS 196 (421)
Q Consensus 127 g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~--~fL~ 196 (421)
...++|+++.. .+ .+.||.|+.|..|||..|++++. +| -..|+|+.|.... .+|.
T Consensus 26 ~~C~vC~~~~s-~~---~~~ll~CD~C~~~fH~~Cl~p~~---vP--------~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IP--------EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSS-CS---EEEEEECSSSCCCCCHHHHTCSS---CC--------SSCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCC-CC---CCCEEECCCCCchhhcccCCCCc---cC--------CCceECccccCccchhhhh
Confidence 34449998752 11 47899999999999999999852 44 2479999998543 4554
No 37
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.83 E-value=0.00047 Score=52.27 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=35.7
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+| +|++. +.||.|+.|..|||..|++.+.. .+| ...|+|+.|...
T Consensus 11 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDME-KAP--------EGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCC-SCC--------CSSCCCTTGGGG
T ss_pred CCCCccCCCC---------CcEEECCCCChhhhhhccCCCCC-CCC--------CCceECcccccc
Confidence 5677 58863 57999999999999999987432 233 247999999754
No 38
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.59 E-value=0.00046 Score=54.12 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=37.3
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+| +|+++.. .+ .+.||.|+.|..|||..|++++. +| -..|+|+.|..+
T Consensus 16 ~~~C~vC~~~~s-~~---~~~ll~CD~C~~~~H~~Cl~~~~---vP--------~g~W~C~~C~~~ 66 (71)
T 2ku3_A 16 DAVCSICMDGES-QN---SNVILFCDMCNLAVHQECYGVPY---IP--------EGQWLCRHCLQS 66 (71)
T ss_dssp SCSCSSSCCCCC-CS---SSCEEECSSSCCEEEHHHHTCSS---CC--------SSCCCCHHHHHH
T ss_pred CCCCCCCCCCCC-CC---CCCEEECCCCCCccccccCCCCc---CC--------CCCcCCccCcCc
Confidence 3344 8988742 11 47899999999999999999853 44 247999999753
No 39
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.56 E-value=0.00092 Score=49.63 Aligned_cols=46 Identities=22% Similarity=0.651 Sum_probs=33.9
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
..+| +|++. +.||.|+.|..|||..|++.+-. .+| ...|+|+.|+.
T Consensus 9 ~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~-~~p--------~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLK-TIP--------KGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCC-SCC--------CSSCCCHHHHC
T ss_pred CCCCccCCCC---------CeEEEcCCCCcceECccCCCCcC-CCC--------CCceEChhhhC
Confidence 4567 58764 57999999999999999984321 233 24799999964
No 40
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.0025 Score=50.59 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=33.7
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
+|++..+ .+.||.|+.|..|||..||+.+-. .+|. -..|+|+.|..
T Consensus 31 vC~~~~~------~~~ll~CD~C~~~yH~~Cl~Ppl~-~~P~-------g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHE------PNMQLLCDECNVAYHIYCLNPPLD-KVPE-------EEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCC------STTEEECSSSCCEEETTSSSSCCS-SCCC-------SSCCCCTTTCC
T ss_pred CcCCcCC------CCCEEEcCCCCccccccccCCCcc-CCCC-------CCCcCCcCccC
Confidence 5777631 478999999999999999984221 2442 23799999974
No 41
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.38 E-value=0.0011 Score=50.89 Aligned_cols=48 Identities=27% Similarity=0.505 Sum_probs=35.0
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+| +|+.. +.||.|+.|..|||..|++.+.. .+| ...|+|+.|..+.
T Consensus 8 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~-~~P--------~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRDG---------GELICCDGCPRAFHLACLSPPLR-EIP--------SGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCS-SCC--------SSCCCCHHHHHTC
T ss_pred CCCCccCCCC---------CCEEEcCCCChhhcccccCCCcC-cCC--------CCCeECccccCcc
Confidence 4466 58753 57999999999999999984321 233 2479999997543
No 42
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.37 E-value=0.0011 Score=50.56 Aligned_cols=55 Identities=22% Similarity=0.498 Sum_probs=37.8
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCC-CCCCCCCCCccCeeeccCccCCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDE-IPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~-~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+| +|++.+. .+ .+.||.|+.|..|||..|++.+-... ++ . -..|+|+.|..+.
T Consensus 6 ~~~C~vC~~~~~-~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~---p----~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYS-EA---PNEMVICDKCGQGYHQLCHTPHIDSSVID---S----DEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCC-BT---TBCEEECSSSCCEEETTTSSSCCCHHHHH---S----SCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCC-CC---CCCEEECCCCChHHHhhhCCCcccccccC---C----CCCEECCCCcCcc
Confidence 3455 8888752 11 47999999999999999998732100 10 1 2479999997543
No 43
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=96.25 E-value=0.0032 Score=50.10 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.1
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
.+.||.|+.|..+||..|++.+-. .+|. -+.|+|+.|+.
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~-~~P~-------g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCS-SCCS-------SSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCCCccc-CCCC-------CCceECcCccc
Confidence 478999999999999999984321 2342 33599999974
No 44
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=96.17 E-value=0.0025 Score=59.10 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=34.3
Q ss_pred ceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 128 VYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 128 ~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
-+| +|+++ +.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 8 ~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNG---------GDLLCCEKCPKVFHLTCHVPTLL-SFP--------SGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCC---------EEEEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CCCCCCCCC---------CceEEcCCCCCccCCccCCCCCC-CCC--------CCCEEeCceeCcc
Confidence 456 67754 56999999999999999964321 233 2469999998654
No 45
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.16 E-value=0.0021 Score=54.23 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.7
Q ss_pred cceEEeCCCCCCCCcccccceeecc--ccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014619 127 GVYCTCNRPYPDPDVEEQVEMIQCC--ICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 189 (421)
Q Consensus 127 g~yC~C~rpypdp~~e~~~~MiQC~--~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~ 189 (421)
..||.+-+. .+.||.|+ .|..|||..||++.. +| ...|+|+.|.
T Consensus 15 ~~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~---~P--------~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQ---PP--------YGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSS---CC--------SSCCCCGGGB
T ss_pred CCCCCcCCC--------CCcEeEECCCCCCcccccccCcCCc---CC--------CCCEECCCCC
Confidence 457864432 37899999 899999999999853 44 2468888774
No 46
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.07 E-value=0.003 Score=57.40 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=29.4
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 145 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 145 ~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|....
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~l~-~~p--------~~~W~C~~C~~~~ 52 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPTLT-NFP--------SGEWICTFCRDLS 52 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSCCS-SCC--------SSCCCCTTTSCSS
T ss_pred CeeeecCCCCcccCccccCCCCC-CCC--------CCCEECccccCcc
Confidence 56999999999999999954321 233 2469999998653
No 47
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=96.06 E-value=0.0044 Score=49.95 Aligned_cols=51 Identities=20% Similarity=0.486 Sum_probs=40.5
Q ss_pred ccceEeecCCCCCCCceEeccchhhh-cCCCceeEeecc--cceeeccCCCCCC
Q 014619 52 RQAIFSCLSCAPEGNAGVCTACSLTC-HDGHEIVELWTK--RNFRCDCGNSKFG 102 (421)
Q Consensus 52 rQ~~y~C~tC~~~~~~gvC~~Cs~~C-H~~H~l~el~~k--r~f~CDCG~~~~~ 102 (421)
-..+|.|+||..+..-.||..|-..- |.||+++=.... .+..||||....+
T Consensus 18 ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eaw 71 (82)
T 3nis_A 18 GEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAW 71 (82)
T ss_dssp TCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGB
T ss_pred CCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHh
Confidence 35699999999988889999997764 999999643332 4678999998765
No 48
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.88 E-value=0.0032 Score=48.60 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.9
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 145 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 145 ~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+.||.|+.|..|||..|++.+-. .+| -..|+|+.|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~-~~P--------~g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGT-SRP--------GTGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTC-CCC--------SSSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccC-cCC--------CCCEECccccCC
Confidence 56999999999999999964321 234 246999999753
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=95.35 E-value=0.006 Score=51.58 Aligned_cols=45 Identities=18% Similarity=0.413 Sum_probs=33.0
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
+|+++.+ .+.||.|+.|..|||..|++.+-. .+| -..|+|+.|..
T Consensus 63 ~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~ 107 (114)
T 2kwj_A 63 LCGTSEN------DDQLLFCDDCDRGYHMYCLNPPVA-EPP--------EGSWSCHLCWE 107 (114)
T ss_dssp TTTCCTT------TTTEEECSSSCCEEETTTSSSCCS-SCC--------SSCCCCHHHHH
T ss_pred cccccCC------CCceEEcCCCCccccccccCCCcc-CCC--------CCCeECccccc
Confidence 5676632 478999999999999999984221 234 24799999964
No 50
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.28 E-value=0.0072 Score=50.56 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=34.6
Q ss_pred eE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 129 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 129 yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+| +|+++.. ...||+|+.|..|||..|++.+.. .+| -..|+|+.|...
T Consensus 56 ~C~~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P--------~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE------DSKMLVCDTCDKGYHTFCLQPVMK-SVP--------TNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC------CTTEEECSSSCCEEEGGGSSSCCS-SCC--------SSCCCCHHHHCC
T ss_pred cccccCccCC------CCCeeECCCCCcHHhHHhcCCccc-cCC--------CCCcCCcCCcCc
Confidence 45 5787742 357999999999999999974321 233 247999999654
No 51
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=56.04 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=26.2
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSA 190 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~ 190 (421)
.+.|+.|+.|..|||..|++.+-. .+|. -..|+|+.|..
T Consensus 186 ~~~lL~CD~C~~~yH~~CL~PPL~-~vP~-------G~~W~Cp~C~~ 224 (226)
T 3ask_A 186 PDKQLMCDECDMAFHIYCLDPPLS-SVPS-------EDEWYCPECRN 224 (226)
T ss_dssp --CCEECSSSCCEECSCC--CCCC-SCCS-------SSCCCCGGGC-
T ss_pred CCCeEEcCCCCcceeCccCCCCcc-cCCC-------CCCCCCcCCcC
Confidence 478999999999999999984321 2342 23799999974
No 52
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.10 E-value=0.029 Score=45.71 Aligned_cols=47 Identities=26% Similarity=0.689 Sum_probs=34.2
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+| +|++. +.||.|+.|...||..|+..+-. .+| -..|+|+.|...
T Consensus 25 ~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~-~~P--------~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCC-CCC--------SSSCCCCSCCCC
T ss_pred CCcCcCcCCC---------CCEEECCCCCCceecccCCCCCC-CCc--------CCCcCCccccCC
Confidence 5577 67754 46999999999999999943211 234 247999999754
No 53
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.05 E-value=0.0095 Score=48.27 Aligned_cols=54 Identities=19% Similarity=0.537 Sum_probs=37.7
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCC---CCCCCCCCCCccCeeeccCccCCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD---EIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~---~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
..+| +|++... +. .+.||.|+.|...||..|++.+-.. .+| -..|+|+.|+...
T Consensus 16 ~~~C~vC~~~~~-~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p--------~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTV-AS---GNQLVECQECHNLYHQDCHKPQVTDKEVNDP--------RLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCC-CT---TCCEEECSSSCCEEETTTSSSCCCHHHHHCT--------TCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCC-CC---CCceEECCCCCCeEcCccCCCcccccccCCC--------CCCeeCccccchh
Confidence 4456 8998752 21 4689999999999999999853210 012 3579999997543
No 54
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=94.99 E-value=0.017 Score=48.63 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=33.2
Q ss_pred EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 131 TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 131 ~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+|+++..+ .+.||.|+.|..+||..|+.-+-. .+| -..|+|+.|..+
T Consensus 66 vC~~~~~~-----~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P--------~~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKN-----ADNMLFCDSCDRGFHMECCDPPLT-RMP--------KGMWICQICRPR 112 (112)
T ss_dssp TTCCCCCT-----TCCCEECTTTCCEECGGGCSSCCS-SCC--------SSCCCCTTTSCC
T ss_pred cccCcCCC-----ccceEEcCCCCCeeecccCCCCCC-CCC--------CCCeECCCCCCc
Confidence 56665311 368999999999999999953211 233 247999999754
No 55
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=93.33 E-value=0.038 Score=50.62 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=28.5
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 145 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 145 ~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
+.|+.|+.|..+||..|+.-+-. .+| -..|+|+.|...
T Consensus 12 g~ll~Cd~C~~~~H~~Cl~p~l~-~~p--------~g~W~C~~C~~~ 49 (189)
T 2ro1_A 12 GDLVMCNQCEFCFHLDCHLPALQ-DVP--------GEEWSCSLCHVL 49 (189)
T ss_dssp SSCCCCTTTCCBCCSTTSTTCCS-SCC--------CTTCCTTTTSCS
T ss_pred CceeECCCCCchhccccCCCCcc-cCC--------CCCCCCcCccCC
Confidence 56999999999999999953211 233 246999999755
No 56
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.19 E-value=0.34 Score=40.19 Aligned_cols=46 Identities=17% Similarity=0.614 Sum_probs=32.8
Q ss_pred eE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014619 129 YC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 189 (421)
Q Consensus 129 yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~ 189 (421)
+| +|+.+.. ...||.|..|...||..||++... .++ ...|.|+.|.
T Consensus 9 ~C~~C~~~g~------~~~ll~C~~C~~~~H~~Cl~~~~~-~~~--------~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGD------LLDQFFCTTCGQHYHGMCLDIAVT-PLK--------RAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCC------TTTSEECSSSCCEECTTTTTCCCC-TTT--------STTCCCTTTC
T ss_pred CCcCCCCCCC------CcCCeECCCCCCCcChHHhCCccc-ccc--------ccCccCCcCC
Confidence 45 6776641 357999999999999999998532 111 2568888875
No 57
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.20 E-value=0.084 Score=44.26 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=28.0
Q ss_pred ccceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCcc
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACS 189 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~ 189 (421)
.+.||.|..|..+||..||++.+. +...-. ...|.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~--~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPE--LTVRVK----ALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHH--HHHHHH----TSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHH--HHHHhh----ccccccccCC
Confidence 478999999999999999987421 000001 2468888885
No 58
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=64.67 E-value=2.8 Score=29.35 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=23.9
Q ss_pred eEeecCCCCCCCceEeccchhhhcCCCceeEe
Q 014619 55 IFSCLSCAPEGNAGVCTACSLTCHDGHEIVEL 86 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~~CH~~H~l~el 86 (421)
-|-|.+|. .-||..|...=|.||.++.|
T Consensus 18 ~lfC~~~~----~~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 18 VLFCESCD----TLTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp CEEETTTT----EEECHHHHHTTTTTCCEEET
T ss_pred EEEeCCCC----EEEecccCCCcCCCCceecH
Confidence 46799985 48999999999999999765
No 59
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.85 E-value=3.9 Score=34.06 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=20.1
Q ss_pred ccceeeccccCceecccCCCCC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLE 165 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~ 165 (421)
.+.||.|..|...||..||++.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCC
T ss_pred CCCCeEeCCCCCccchhhCCCh
Confidence 4789999999999999999874
No 60
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=61.47 E-value=5.8 Score=32.01 Aligned_cols=55 Identities=18% Similarity=0.417 Sum_probs=34.7
Q ss_pred ccceeeccccCceecccCC---CCCCCCCCCCCCCCCCccCeeeccCccCCCcccccc
Q 014619 144 QVEMIQCCICEDWFHEEHI---GLEPSDEIPRDDEGEPVYEDFICKACSAVCSFLSTY 198 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Cl---gl~~~~~~p~~~~~~~~~~~fiC~~C~~~~~fL~~y 198 (421)
.+.|++|-+|-.=||..|+ |..........-.-...-.-|-|+.|-.-+..|..+
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLtEe 83 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEE 83 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSCCC
T ss_pred ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcchh
Confidence 4789999999999999998 332211001100111125679999997666666644
No 61
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=58.98 E-value=4.3 Score=28.24 Aligned_cols=27 Identities=30% Similarity=0.812 Sum_probs=22.1
Q ss_pred EeecCCCCCCCceEeccch-hhhcCCCceeEe
Q 014619 56 FSCLSCAPEGNAGVCTACS-LTCHDGHEIVEL 86 (421)
Q Consensus 56 y~C~tC~~~~~~gvC~~Cs-~~CH~~H~l~el 86 (421)
+-|.+|. ..||..|. ..=|.+|.++.|
T Consensus 19 lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 19 IYCLTCE----VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp EEETTTT----EEECHHHHHHSTTTTSCEEEC
T ss_pred EEcCCCC----eeEcccccCCCcCCCCcEEeC
Confidence 6699984 58999998 458999999765
No 62
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=58.90 E-value=5.1 Score=28.36 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=23.5
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEe
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVEL 86 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~el 86 (421)
-|-|.+|. .-||..|.. .=|.+|.++.|
T Consensus 19 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 19 SLFCYEDQ----EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp CEEESSSC----SEECHHHHTSSTTTTSCEEEC
T ss_pred eEEeCCCC----eEEeccccCCCCCCCCcEeeH
Confidence 46688884 489999998 89999999866
No 63
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=51.35 E-value=7.3 Score=29.38 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=23.6
Q ss_pred eEeecCCCCCCCceEeccchhhhcCCCceeEe
Q 014619 55 IFSCLSCAPEGNAGVCTACSLTCHDGHEIVEL 86 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~~CH~~H~l~el 86 (421)
-|-|.+|. .-||..|...=|.+|.++.|
T Consensus 29 ~lfC~~d~----~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 29 ELFCQTDQ----TCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp CEEESSSC----CEECHHHHHTTTSSSCEEEH
T ss_pred EEEeCCCC----eEEccccCCCCCCCCCEecH
Confidence 46688885 48999999999999999765
No 64
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=50.60 E-value=4.2 Score=29.80 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=23.0
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 87 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~el~ 87 (421)
-|-|.+|. .-||..|.. .=|.+|.++.|-
T Consensus 20 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 49 (64)
T 2d8u_A 20 NIYCLTCE----VPTCSMCKVFGIHKACEVAPLQ 49 (64)
T ss_dssp CSEESSSC----CCCCSHHHHSSSTTSSCEECTT
T ss_pred ceEcCcCC----ceeCccccCCCcCCCCCeeCHH
Confidence 35688985 479999997 499999997653
No 65
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=50.31 E-value=5.3 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=24.1
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 87 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~el~ 87 (421)
-|-|.+|. .-||..|.. .=|.||.++.|-
T Consensus 30 ~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 30 NMYCVSDD----QLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CEEETTTT----EEECHHHHHTSTTTTCCBCCCC
T ss_pred cEEcCCCC----ceEcccCcCCCCCCCCCccCHH
Confidence 46798985 589999999 899999997654
No 66
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.94 E-value=10 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=23.5
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEee
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVELW 87 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~el~ 87 (421)
-|-|.+|. .-||..|.. .=|.+|.++.|-
T Consensus 25 ~lfC~~d~----~~iC~~C~~s~eH~~H~~~~l~ 54 (59)
T 2yrg_A 25 LLFCQEDG----KVICWLCERSQEHRGHHTFPTS 54 (59)
T ss_dssp CEEETTTC----SEECHHHHTSTTTTTCCEEECC
T ss_pred eeecCCCC----cEEecccCCCCcCCCCcEeeHH
Confidence 35688874 589999998 899999998663
No 67
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.00 E-value=9 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=21.7
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeE
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVE 85 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~e 85 (421)
-|-|.+| ..-||..|.. .-|.+|.++.
T Consensus 29 ~lfC~~d----~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 29 KLFCEVD----EEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp CEEETTT----TEEECHHHHHSHHHHSSCEEC
T ss_pred eEEcCCC----CcEEecccCCCCCCCCCcEec
Confidence 4567776 4589999998 8999999864
No 68
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=40.90 E-value=5.6 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.407 Sum_probs=20.5
Q ss_pred EeecCCCCCCCceEeccchh-hhcCCCceeE
Q 014619 56 FSCLSCAPEGNAGVCTACSL-TCHDGHEIVE 85 (421)
Q Consensus 56 y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~e 85 (421)
|-|.+|. .-||..|.. .=|.||.++.
T Consensus 15 lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 15 LYCKDDG----TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCCSSS----SSSCCTTSSCSSCTTCCCCC
T ss_pred EEeCCCC----eEEeccCCCCCCCCCCcEec
Confidence 4566663 579999998 7999999864
No 69
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=39.17 E-value=7.3 Score=34.11 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=33.9
Q ss_pred cceE-EeCCCCCCCCcccccceeeccccCceecccCCCCCCCC-CCCCC-CCCCCccCeeeccCccCC
Q 014619 127 GVYC-TCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSD-EIPRD-DEGEPVYEDFICKACSAV 191 (421)
Q Consensus 127 g~yC-~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~~-~~p~~-~~~~~~~~~fiC~~C~~~ 191 (421)
.-|| +|.. .+.+|-|+.|-.=||..||..+-.+ .+... .. -+.|.|+.|..+
T Consensus 63 ~d~C~vC~~---------GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~~ 117 (142)
T 2lbm_A 63 DEQCRWCAE---------GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHPE 117 (142)
T ss_dssp BCSCSSSCC---------CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCCC
T ss_pred CCeecccCC---------CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccCc
Confidence 4577 5664 4789999999999999999642110 00000 01 357999999754
No 70
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=36.40 E-value=23 Score=28.24 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.6
Q ss_pred ccceeeccccCceecccCCCCCC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLEP 166 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~~ 166 (421)
.+.+..|..|.-.+|..|+.+++
T Consensus 58 ~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 58 TIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCcEEEcCCCCCeEcHHhcCCCC
Confidence 47889999999999999986643
No 71
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=33.44 E-value=20 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhc--CCCCccCHHHHHHHHH
Q 014619 382 IADMKDEFHNFLQSF--DPSKAITSDDVHQIFE 412 (421)
Q Consensus 382 Yn~mKdkL~~fLk~F--e~gkvVt~EDIk~FFe 412 (421)
+..||..|+.+=+.| ..|+.=+.+||+.-=+
T Consensus 6 ~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~ 38 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRRQRGRRPSQDDVEAAPE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHH
Confidence 678999999999999 8899999999886544
No 72
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.09 E-value=29 Score=23.48 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.6
Q ss_pred ccCHHHHHHHHHHHHHhhh
Q 014619 401 AITSDDVHQIFENLAKKRR 419 (421)
Q Consensus 401 vVt~EDIk~FFe~l~~~kr 419 (421)
+||++||+.==+..+..|+
T Consensus 6 ~Vte~DIr~QE~rV~~aR~ 24 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQVRK 24 (36)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHH
Confidence 7999999987766665554
No 73
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=32.90 E-value=38 Score=26.25 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.9
Q ss_pred ccCHHHHHHHHHHHHH
Q 014619 401 AITSDDVHQIFENLAK 416 (421)
Q Consensus 401 vVt~EDIk~FFe~l~~ 416 (421)
-||..||++|+..|.+
T Consensus 50 ~it~~~i~~~~~~l~~ 65 (118)
T 2kd1_A 50 KLTSLHMQNYVNSLRD 65 (118)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4899999999999864
No 74
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=31.69 E-value=29 Score=29.54 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhhc----------CCCCccCHHHHH
Q 014619 381 GIADMKDEFHNFLQSF----------DPSKAITSDDVH 408 (421)
Q Consensus 381 gYn~mKdkL~~fLk~F----------e~gkvVt~EDIk 408 (421)
+|..++.-|++||... ..-|+||.+||.
T Consensus 69 iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~ 106 (121)
T 2ly8_A 69 IYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHH
Confidence 6888999999998874 388999999996
No 75
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=30.72 E-value=20 Score=26.31 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=9.0
Q ss_pred cCeeeccCccC
Q 014619 180 YEDFICKACSA 190 (421)
Q Consensus 180 ~~~fiC~~C~~ 190 (421)
-+.|+||.|-.
T Consensus 34 P~dw~CP~Cg~ 44 (54)
T 4rxn_A 34 PDDWVCPLCGV 44 (54)
T ss_dssp CTTCBCTTTCC
T ss_pred CCCCcCcCCCC
Confidence 57899999964
No 76
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=29.62 E-value=51 Score=25.40 Aligned_cols=30 Identities=3% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHhhhhc-C--CCCccCHHHHHHHHHHHHH
Q 014619 387 DEFHNFLQSF-D--PSKAITSDDVHQIFENLAK 416 (421)
Q Consensus 387 dkL~~fLk~F-e--~gkvVt~EDIk~FFe~l~~ 416 (421)
..|..||.++ . .=.-||..||++|+..|.+
T Consensus 33 ~~l~~~i~~~~g~~~l~~it~~~i~~~~~~l~~ 65 (116)
T 2kj5_A 33 SRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMK 65 (116)
T ss_dssp HHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHCCCcHhhCCHHHHHHHHHHHHH
Confidence 3344555443 2 2234899999999998864
No 77
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.39 E-value=22 Score=28.50 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCccCHHHHHH
Q 014619 373 VEKMEILNGIADMKDEFHNFLQSFDPSKAITSDDVHQ 409 (421)
Q Consensus 373 vqaIE~i~gYn~mKdkL~~fLk~Fe~gkvVt~EDIk~ 409 (421)
.+=|..||.||++||-=...+.....-+-||--||..
T Consensus 41 ~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv~~~~v~~ 77 (85)
T 3viq_B 41 QKHIDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFD 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4668999999999998887777762223355555544
No 78
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.09 E-value=59 Score=23.42 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=9.2
Q ss_pred cCeeeccCccC
Q 014619 180 YEDFICKACSA 190 (421)
Q Consensus 180 ~~~fiC~~C~~ 190 (421)
-+.|+||.|-.
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 57899999964
No 79
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=29.00 E-value=41 Score=26.42 Aligned_cols=31 Identities=3% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHhhhhc-CCC--CccCHHHHHHHHHHHHH
Q 014619 386 KDEFHNFLQSF-DPS--KAITSDDVHQIFENLAK 416 (421)
Q Consensus 386 KdkL~~fLk~F-e~g--kvVt~EDIk~FFe~l~~ 416 (421)
+..|..|+.++ ..- .-||..||++|+..|.+
T Consensus 32 ~~~l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 65 (121)
T 2kkv_A 32 LRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDT 65 (121)
T ss_dssp HHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHH
T ss_pred HHHHHhhcCchhcCCCHHHcCHHHHHHHHHHHHH
Confidence 44566666654 332 34899999999998864
No 80
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=28.51 E-value=80 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=25.6
Q ss_pred HHHHHHhhhhc---CCCCccCHHHHHHHHHHHHH
Q 014619 386 KDEFHNFLQSF---DPSKAITSDDVHQIFENLAK 416 (421)
Q Consensus 386 KdkL~~fLk~F---e~gkvVt~EDIk~FFe~l~~ 416 (421)
|.+|..+|... .-...++++++|+|.-.|..
T Consensus 58 k~kv~~Wl~~Ln~M~AsdeL~e~q~RqllfDle~ 91 (102)
T 2j9w_A 58 REKVSQWLQKLSSMSASDELDDSQVRQMLFDLES 91 (102)
T ss_dssp HHHHHHHHHHHHTSCTTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH
Confidence 67899999988 44688999999999877753
No 81
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=27.94 E-value=74 Score=24.37 Aligned_cols=17 Identities=0% Similarity=0.255 Sum_probs=13.9
Q ss_pred CccCHHHHHHHHHHHHH
Q 014619 400 KAITSDDVHQIFENLAK 416 (421)
Q Consensus 400 kvVt~EDIk~FFe~l~~ 416 (421)
.-||..||++|+..|.+
T Consensus 45 ~~It~~~i~~~~~~l~~ 61 (106)
T 2khv_A 45 QDVDTKLIMKVLDPIWE 61 (106)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHH
Confidence 34899999999998753
No 82
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.95 E-value=42 Score=26.99 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=25.4
Q ss_pred cceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 145 VEMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 145 ~~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+.+|.+|. |-+..=.|.+.. +++..-.=+.+-+.|+||.|-..
T Consensus 33 m~~y~C~vCG-yvYD~~~Gdp~~-gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCG-HIYDEALGDEAE-GFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTT-EEEETTSCCTTT-TCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCC-eEecCCcCCccc-CcCCCCChhHCCCCCCCCCCCCC
Confidence 3468999997 555554544332 23322111113578999999643
No 83
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=26.06 E-value=71 Score=24.94 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.1
Q ss_pred CccCHHHHHHHHHHHHH
Q 014619 400 KAITSDDVHQIFENLAK 416 (421)
Q Consensus 400 kvVt~EDIk~FFe~l~~ 416 (421)
.-||..||++|+..|.+
T Consensus 48 ~~It~~~i~~~~~~l~~ 64 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFED 64 (118)
T ss_dssp TSCCHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHHH
Confidence 35899999999998864
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=25.34 E-value=24 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.603 Sum_probs=22.8
Q ss_pred eEeecCCCCCCCceEeccchh-hhcCCCceeEe
Q 014619 55 IFSCLSCAPEGNAGVCTACSL-TCHDGHEIVEL 86 (421)
Q Consensus 55 ~y~C~tC~~~~~~gvC~~Cs~-~CH~~H~l~el 86 (421)
-|-|.+|. .-||..|.. .=|.||.++.|
T Consensus 71 ~~fC~~~~----~~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 71 NMYCVTDD----QLICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CEEETTTT----EEECHHHHHHTTTSSSCBCCC
T ss_pred eEECCCCC----CccchhcCCCCCcCCCCeecC
Confidence 46688884 589999997 79999998754
No 85
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=24.57 E-value=55 Score=25.12 Aligned_cols=30 Identities=7% Similarity=0.191 Sum_probs=19.5
Q ss_pred HHHHHhhhhc-CC--CCccCHHHHHHHHHHHHH
Q 014619 387 DEFHNFLQSF-DP--SKAITSDDVHQIFENLAK 416 (421)
Q Consensus 387 dkL~~fLk~F-e~--gkvVt~EDIk~FFe~l~~ 416 (421)
..|..||.++ .. =.-||..||++|+..|.+
T Consensus 35 ~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~ 67 (117)
T 2kkp_A 35 TVLRLHVIPTLGSIPLKKLQPADIQRLYASKLE 67 (117)
T ss_dssp HHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCceEHHHCCHHHHHHHHHHHHH
Confidence 3344455444 32 245899999999998864
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.56 E-value=47 Score=36.41 Aligned_cols=61 Identities=23% Similarity=0.544 Sum_probs=37.5
Q ss_pred CcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCC-----------C--CCCCCCCCCCc-cCeeeccCccCC
Q 014619 126 KGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EIPRDDEGEPV-YEDFICKACSAV 191 (421)
Q Consensus 126 ~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~-----------~--~~p~~~~~~~~-~~~fiC~~C~~~ 191 (421)
.=.||.|+.| .-.++|..|..||=..--+.+.+ . .+..+. ++ -..+-|..|-.+
T Consensus 13 ~c~yc~~~~~---------~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~---~~~~~~~~c~~c~~~ 80 (802)
T 2xzl_A 13 SCAYCGIDSA---------KCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDS---DLGDTVLECYNCGRK 80 (802)
T ss_dssp CCTTTCCCCT---------TTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTS---SSCSCBCCCSSSCCC
T ss_pred hCcccCCCCC---------ceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCC---CCCCceeEeecCCCC
Confidence 4568888855 36799999999996654433211 0 111111 11 236789999888
Q ss_pred Ccccccc
Q 014619 192 CSFLSTY 198 (421)
Q Consensus 192 ~~fL~~y 198 (421)
+-|+.-|
T Consensus 81 n~f~lg~ 87 (802)
T 2xzl_A 81 NVFLLGF 87 (802)
T ss_dssp CTTTEEE
T ss_pred ceeeeee
Confidence 8777643
No 87
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.44 E-value=52 Score=26.05 Aligned_cols=43 Identities=21% Similarity=0.553 Sum_probs=21.3
Q ss_pred eeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCC
Q 014619 147 MIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 147 MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
..+|.+|. |-+..=.|.+.. +++....=+.+-+.|+||.|-..
T Consensus 27 ~y~C~vCG-yvYD~~~Gdp~~-gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCG-FEYDEALGWPED-GIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTC-CEEETTTCBTTT-TBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCC-EEEcCCcCCccc-CcCCCCChhHCCCCCcCCCCCCC
Confidence 46777776 333333333221 22221111113578999999643
No 88
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.17 E-value=75 Score=24.32 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=24.5
Q ss_pred ceeeccccCceecccCCCCCCCCCCCCCCCCCCccCeeeccCccCCC
Q 014619 146 EMIQCCICEDWFHEEHIGLEPSDEIPRDDEGEPVYEDFICKACSAVC 192 (421)
Q Consensus 146 ~MiQC~~CEDWfH~~Clgl~~~~~~p~~~~~~~~~~~fiC~~C~~~~ 192 (421)
...+|.+|. |-+..=.|.+.. +++....=+.+-+.|+||.|-...
T Consensus 6 ~~y~C~vCG-yiYd~~~Gdp~~-gi~pGT~f~~lPddw~CP~Cga~K 50 (70)
T 1dx8_A 6 GKYECEACG-YIYEPEKGDKFA-GIPPGTPFVDLSDSFMCPACRSPK 50 (70)
T ss_dssp SCEEETTTC-CEECTTTCCTTT-TCCSSCCGGGSCTTCBCTTTCCBG
T ss_pred ceEEeCCCC-EEEcCCCCCccc-CcCCCCchhhCCCCCcCCCCCCCH
Confidence 357888887 445444443322 233221111135789999997544
No 89
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=22.78 E-value=85 Score=24.27 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHHhhhhcCCCCccCHHHHHHHHHHHHH
Q 014619 388 EFHNFLQSFDPSKAITSDDVHQIFENLAK 416 (421)
Q Consensus 388 kL~~fLk~Fe~gkvVt~EDIk~FFe~l~~ 416 (421)
.|..||... .=+-||..||++|+..|.+
T Consensus 38 ~i~p~~g~~-~l~~It~~~i~~~~~~l~~ 65 (112)
T 3lys_A 38 YLKTYMPNV-LISEITASSYQRALNKFAE 65 (112)
T ss_dssp HHHHHSSSC-BTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCC-CHHhCCHHHHHHHHHHHHH
Confidence 455554222 2245899999999999864
No 90
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=22.31 E-value=53 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHhhhhc--CCCCccCHHHHHHHHHH
Q 014619 388 EFHNFLQSF--DPSKAITSDDVHQIFEN 413 (421)
Q Consensus 388 kL~~fLk~F--e~gkvVt~EDIk~FFe~ 413 (421)
.+..+++.+ +....|+-++...++..
T Consensus 39 ~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 66 (78)
T 1k9u_A 39 EVQRMMAEIDTDGDGFIDFNEFISFCNA 66 (78)
T ss_dssp HHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 344455555 22334555555554443
No 91
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=22.28 E-value=50 Score=36.19 Aligned_cols=62 Identities=21% Similarity=0.487 Sum_probs=37.9
Q ss_pred CCcceEEeCCCCCCCCcccccceeeccccCceecccCCCCCCC-----------C--CCCCCCCCCCc-cCeeeccCccC
Q 014619 125 FKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPS-----------D--EIPRDDEGEPV-YEDFICKACSA 190 (421)
Q Consensus 125 f~g~yC~C~rpypdp~~e~~~~MiQC~~CEDWfH~~Clgl~~~-----------~--~~p~~~~~~~~-~~~fiC~~C~~ 190 (421)
..-.||.|+.| .-.++|..|..||=..--+.+.+ . .+..+ .++ -..+-|..|-.
T Consensus 7 ~~c~~c~~~~~---------~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~---~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDP---------ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKD---GPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCG---------GGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTT---STTCSCBCCCTTTCC
T ss_pred hhccccCCCCC---------CeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCC---CCCCCceEEEeccCC
Confidence 34568888854 46899999999996654433211 0 01110 010 24677999988
Q ss_pred CCcccccc
Q 014619 191 VCSFLSTY 198 (421)
Q Consensus 191 ~~~fL~~y 198 (421)
++.|+.-|
T Consensus 75 ~n~f~lg~ 82 (800)
T 2wjy_A 75 RNVFLLGF 82 (800)
T ss_dssp CCTTTCEE
T ss_pred Cceeeeec
Confidence 88877643
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.92 E-value=42 Score=26.62 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=20.8
Q ss_pred ccceEeecCCCCCCCceEeccc---hhhhcCCCcee
Q 014619 52 RQAIFSCLSCAPEGNAGVCTAC---SLTCHDGHEIV 84 (421)
Q Consensus 52 rQ~~y~C~tC~~~~~~gvC~~C---s~~CH~~H~l~ 84 (421)
+++ .|..|. .+..+|.|| ++.|+.+|+|+
T Consensus 30 ~~a--fCPeCg--q~Le~lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 30 LQA--LCPDCR--QPLQVLKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp EEE--ECSSSC--SCCCEEEETTEEEECCTTTTCCC
T ss_pred Ccc--cCcchh--hHHHHHHhcCCcCeeeccCCCEe
Confidence 455 677776 355677777 58899999885
No 93
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=21.49 E-value=83 Score=25.46 Aligned_cols=42 Identities=29% Similarity=0.580 Sum_probs=26.3
Q ss_pred ceEeecCCCCCCCceEeccchhhhc-CCCceeEe-ecccceeeccCCCC
Q 014619 54 AIFSCLSCAPEGNAGVCTACSLTCH-DGHEIVEL-WTKRNFRCDCGNSK 100 (421)
Q Consensus 54 ~~y~C~tC~~~~~~gvC~~Cs~~CH-~~H~l~el-~~kr~f~CDCG~~~ 100 (421)
.+|.|.+|.- ....=+..|= .+|+|.-. -.||-|+|.||+..
T Consensus 14 ~av~C~~C~y-----t~~~~~~~C~~~~H~l~~~~a~KRFFkC~C~~Rt 57 (92)
T 2kwq_A 14 RVVTCKTCKY-----THFKPKETCVSENHDFHWHNGVKRFFKCPCGNRT 57 (92)
T ss_dssp EEEEETTTCC-----EESSCCHHHHHTTCCEEEEEEECEEEECTTSCEE
T ss_pred EEEEccCCcc-----eecCcchhHHhcCCceEEEeeeEEEEECCCCCce
Confidence 4788888863 3333334443 57777422 23699999998754
No 94
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=20.56 E-value=1.1e+02 Score=24.11 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=31.9
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHHHhhhhc--CCCCccCHHHHHHHHHHHHH
Q 014619 366 FLNKLGHVEKMEILNGIADMKDEFHNFLQSF--DPSKAITSDDVHQIFENLAK 416 (421)
Q Consensus 366 aL~sl~RvqaIE~i~gYn~mKdkL~~fLk~F--e~gkvVt~EDIk~FFe~l~~ 416 (421)
.|..|-+-.+-.-+.+|...=..+..||... ..=..||.+||++|...|++
T Consensus 16 fl~~l~~~~s~~Ti~~Y~~~l~~f~~~l~~~~~~~l~~it~~~i~~y~~~l~~ 68 (117)
T 3nrw_A 16 YLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRG 68 (117)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHHHHHHHh
Confidence 4443334445556777765555555555443 13357999999999998864
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.04 E-value=19 Score=30.99 Aligned_cols=42 Identities=24% Similarity=0.451 Sum_probs=28.8
Q ss_pred ccceeeccccCceecccCCCCC--CC--CCCCCCCCCCCccCeeeccCccCC
Q 014619 144 QVEMIQCCICEDWFHEEHIGLE--PS--DEIPRDDEGEPVYEDFICKACSAV 191 (421)
Q Consensus 144 ~~~MiQC~~CEDWfH~~Clgl~--~~--~~~p~~~~~~~~~~~fiC~~C~~~ 191 (421)
.+.+|-|+.|--=||..||... +. ..+. .. -+.|.|+.|..+
T Consensus 66 GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~----~~~W~C~~C~~~ 111 (129)
T 3ql9_A 66 GGNLICCDFCHNAFCKKCILRNLGRRELSTIM--DE----NNQWYCYICHPE 111 (129)
T ss_dssp CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHT--CT----TSCCCCTTTCCG
T ss_pred CCeeEecCCCchhhhHHHhCCCcchhHHHHhc--cC----CCCeEcCCcCCH
Confidence 4789999999999999999532 10 0011 11 368999999654
Done!