Query 014620
Match_columns 421
No_of_seqs 164 out of 1031
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05388 argJ bifunctional orn 100.0 8E-144 2E-148 1090.7 40.0 347 68-420 1-347 (395)
2 TIGR00120 ArgJ glutamate N-ace 100.0 5E-143 1E-147 1087.6 40.3 352 66-421 2-357 (404)
3 cd02152 OAT Ornithine acetyltr 100.0 9E-143 2E-147 1082.3 39.5 345 72-421 1-345 (390)
4 COG1364 ArgJ N-acetylglutamate 100.0 2E-142 4E-147 1072.9 38.3 356 61-421 4-359 (404)
5 PF01960 ArgJ: ArgJ family; I 100.0 1E-142 2E-147 1080.8 28.7 343 75-421 1-343 (388)
6 KOG2786 Putative glutamate/orn 100.0 2E-120 4E-125 888.7 28.4 361 57-420 15-385 (431)
7 cd00123 DmpA_OAT DmpA/OAT supe 100.0 5.3E-59 1.2E-63 456.2 22.7 243 72-333 1-284 (286)
8 cd06845 Bcl-2_like Apoptosis r 82.5 2.3 5E-05 37.9 4.9 34 354-393 64-98 (144)
9 PF00452 Bcl-2: Apoptosis regu 79.6 4 8.7E-05 33.9 5.0 19 375-393 42-61 (101)
10 cd02253 DmpA L-Aminopeptidase 78.7 4.4 9.5E-05 42.1 6.0 55 248-303 227-281 (339)
11 smart00337 BCL BCL (B-Cell lym 78.6 3.7 8E-05 34.8 4.6 34 354-393 26-60 (100)
12 COG3191 DmpA L-aminopeptidase/ 77.3 2.9 6.4E-05 43.5 4.2 224 68-303 16-285 (348)
13 cd02252 nylC_like nylC-like fa 72.2 5.8 0.00013 39.8 4.7 207 70-303 2-233 (260)
14 TIGR00865 bcl-2 Apoptosis regu 67.4 8.5 0.00018 37.5 4.6 27 357-389 99-125 (213)
15 PF03576 Peptidase_S58: Peptid 50.5 10 0.00022 39.2 2.0 219 67-304 2-272 (326)
16 PF04475 DUF555: Protein of un 41.4 35 0.00075 30.0 3.6 26 342-367 70-95 (102)
17 PTZ00397 macrophage migration 36.6 50 0.0011 28.3 3.9 30 145-174 70-99 (116)
18 KOG3302 TATA-box binding prote 33.3 35 0.00077 33.2 2.7 20 347-366 79-98 (200)
19 COG2101 SPT15 TATA-box binding 30.6 75 0.0016 30.6 4.3 93 90-193 22-124 (185)
20 KOG0964 Structural maintenance 29.6 61 0.0013 38.4 4.2 46 251-296 598-655 (1200)
21 PF14552 Tautomerase_2: Tautom 29.6 45 0.00098 27.7 2.4 27 148-174 44-70 (82)
22 COG0016 PheS Phenylalanyl-tRNA 28.5 18 0.0004 37.6 -0.1 17 242-258 281-297 (335)
23 PRK01964 4-oxalocrotonate taut 27.2 95 0.0021 23.7 3.7 30 145-174 13-42 (64)
24 PRK03922 hypothetical protein; 27.1 81 0.0018 28.2 3.6 27 342-368 72-98 (113)
25 TIGR02830 spore_III_AG stage I 26.7 1.1E+02 0.0023 29.5 4.7 60 106-175 125-184 (186)
26 PRK03903 transaldolase; Provis 25.5 1.3E+02 0.0029 30.4 5.4 47 145-192 154-200 (274)
27 COG0036 Rpe Pentose-5-phosphat 24.8 66 0.0014 31.8 2.9 71 293-380 133-205 (220)
28 PHA02944 hypothetical protein; 24.6 6.4E+02 0.014 24.3 9.2 113 148-283 44-177 (180)
29 PF10229 DUF2246: Uncharacteri 24.5 33 0.00071 34.9 0.8 38 234-273 239-278 (278)
30 PRK14651 UDP-N-acetylenolpyruv 23.2 1E+02 0.0023 31.1 4.1 39 134-184 233-272 (273)
31 PHA02564 V virion protein; Pro 23.0 1.1E+02 0.0024 28.2 3.9 24 151-174 82-105 (141)
32 PF00352 TBP: Transcription fa 22.9 73 0.0016 26.1 2.5 22 346-367 59-80 (86)
33 COG1151 6Fe-6S prismane cluste 21.9 94 0.002 34.7 3.7 61 104-179 384-446 (576)
34 COG1885 Uncharacterized protei 21.5 1.2E+02 0.0027 27.0 3.7 28 343-370 73-100 (115)
35 cd04516 TBP_eukaryotes eukaryo 21.0 93 0.002 29.3 3.0 22 346-367 57-78 (174)
36 KOG4355 Predicted Fe-S oxidore 20.9 1.2E+02 0.0026 32.8 4.1 56 129-184 186-251 (547)
37 PF07425 Pardaxin: Pardaxin; 20.4 49 0.0011 23.1 0.8 13 363-375 7-19 (33)
No 1
>PRK05388 argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated
Probab=100.00 E-value=7.9e-144 Score=1090.72 Aligned_cols=347 Identities=51% Similarity=0.790 Sum_probs=337.2
Q ss_pred CccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccCcH
Q 014620 68 GVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGD 147 (421)
Q Consensus 68 gv~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~TG~ 147 (421)
+++.|+||+++|++||||+++ |+||+||+|+.||.+|||||+|+|+||||+|||++|+. +++|||||||||||||||+
T Consensus 1 ~~~~p~Gf~~~g~~aGiK~~~-~~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~-~~~rAvvvNSGnANA~TG~ 78 (395)
T PRK05388 1 GVTAPKGFRAAGVAAGIKKSG-RKDLALIVSDGPASAAGVFTTNKFKAAPVLVCREHLAD-GRLRAVVVNSGNANACTGE 78 (395)
T ss_pred CCCCCceEEEEEEEeccccCC-CCCEEEEEeCCCceEEEEeccCceeeccchHHHHHhcc-CCceEEEEcCCcccccccH
Confidence 467899999999999999865 89999999999999999999999999999999999984 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEE
Q 014620 148 AGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVES 227 (421)
Q Consensus 148 ~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~pK~~a~~~ 227 (421)
+|++|+++|++++|++|+|++++|||+||||||+|||||+|+++||.+..+|+. ++|++||+||||||||||++++++
T Consensus 79 ~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpm~ki~~~i~~~~~~l~~--~~~~~aA~AImTTDt~pK~~~~~~ 156 (395)
T PRK05388 79 QGLQDARATAEAVAELLGIPAEEVLVASTGVIGEPLPMDKILAGLPAAVAALSE--DGWEDAAEAIMTTDTFPKQAAREV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEeCchhccCcCCHHHHHHhHHHHHHhcCc--ccHHHHHHHHhcCCCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999965 589999999999999999999999
Q ss_pred EECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCCCCcc
Q 014620 228 QVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSR 307 (421)
Q Consensus 228 ~i~g~~v~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~ 307 (421)
+++|++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++++++
T Consensus 157 ~~~g~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~~v~~SFN~ItVDGDtSTNDtv~llAnG~ag~~~ 236 (395)
T PRK05388 157 EIDGKTVTIGGIAKGAGMIAPNMATMLAFITTDAAISPEVLQALLREAVDKSFNRITVDGDTSTNDTVLLLANGASGNPE 236 (395)
T ss_pred EECCEEEEEEEEEeecccCCCcchhhhhheeeCccCCHHHHHHHHHHHHhhCcCCeeECCCcCHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhHHHH
Q 014620 308 ISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAA 387 (421)
Q Consensus 308 i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtAi~G~DpNWGRIla 387 (421)
| + +++++++|+++|.+||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||+|
T Consensus 237 i-~-~~~~~~~f~~aL~~v~~~LAk~IvrDGEGATK~i~v~V~gA~s~~~A~~iA~~Ia~S~LVKTAifG~DpNWGRIl~ 314 (395)
T PRK05388 237 I-G-DTPDLAAFEEALTEVCQDLAKQIVRDGEGATKLIEVTVTGAASEEDARKIAKAIANSPLVKTAIFGEDPNWGRILA 314 (395)
T ss_pred C-C-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEeCCCCHHHHHHHHHHHcCChHHHHhHhccCCCHHHHHH
Confidence 8 3 4567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcccccceeEEEeCCEEEeeCCcCCCCC
Q 014620 388 AAGYAGVSFYQNKLRILLGDSLLMDGGQPLPFD 420 (421)
Q Consensus 388 AvG~sg~~~d~~~v~I~~g~~~v~~~G~~~~~d 420 (421)
|+||||++|||++++|+||+++|+++|++.+||
T Consensus 315 AiG~sg~~~d~~~v~i~~~~v~v~~~G~~~~~~ 347 (395)
T PRK05388 315 AVGYSGADFDPDRLDIYLGGVLVAKNGGPAPFY 347 (395)
T ss_pred HhcCCCCccchhheEEEECCEEEEeCCCCCCCC
Confidence 999999999999999999999999999999887
No 2
>TIGR00120 ArgJ glutamate N-acetyltransferase/amino-acid acetyltransferase. This enzyme can acetylate Glu to N-acetyl-Glu by deacetylating N-2-acetyl-ornithine into ornithine; the two halves of this reaction represent the first and fifth steps in the synthesis of Arg (or citrulline) from Glu by way of ornithine (EC 2.3.1.35). In Bacillus stearothermophilus, but not in Thermus thermophilus HB27, the enzyme is bifunctional and can also use acetyl-CoA to acetylate Glu (EC 2.3.1.1).
Probab=100.00 E-value=4.6e-143 Score=1087.63 Aligned_cols=352 Identities=50% Similarity=0.764 Sum_probs=340.9
Q ss_pred CCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccC
Q 014620 66 PGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAAT 145 (421)
Q Consensus 66 ~ggv~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~T 145 (421)
+++++.|+||+++|++||||+ |+||+||+|+.||.+|||||+|+|+||||+|||++|+.++++||||||||||||||
T Consensus 2 ~~~~~~p~GF~~~g~~aGiK~---r~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~~~~~rAvvvNSGnANA~T 78 (404)
T TIGR00120 2 PGGVTAPKGFLAAGIKEGKKK---SYDLGLIISERPATAAAVFTTNKVRAAPVKVSEEVLKDGRSIRAIVVNSGNANAFT 78 (404)
T ss_pred CCCCcCCCeEEEEEEecCCcc---CCCEEEEEeCCCccEEEEecCCCceeccchHHHHHhccCCceEEEEEcCCcccccc
Confidence 578999999999999999996 68999999999999999999999999999999999975338999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEE
Q 014620 146 GDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAV 225 (421)
Q Consensus 146 G~~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~pK~~a~ 225 (421)
|++|++|+++|++++|+.|+|++++|||+||||||+|||||+|+++||.++.+|+.+.++|++||+||||||||||++++
T Consensus 79 G~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lp~~~i~~~i~~~~~~l~~~~~~~~~aA~AImTTDt~pK~~~~ 158 (404)
T TIGR00120 79 GEQGMKDAREMARLVAELLGIEEESVLVASTGVIGRRLDMEKIRTGINKLYGELKNSSNSSDNFAKAIMTTDTFPKEVAV 158 (404)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcccEEEeCchhccCcCCHHHHHHhHHHHHHhcCccccCHHHHHHHHhcCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999986556899999999999999999999
Q ss_pred EEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCCCC
Q 014620 226 ESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRS 305 (421)
Q Consensus 226 ~~~i~g~~v~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~ 305 (421)
+++++|++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++++
T Consensus 159 ~~~~~g~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~Lq~~L~~av~~SFN~IsVDGDtSTNDtv~~lAnG~ag~ 238 (404)
T TIGR00120 159 EFELPGEKVRIGGVAKGAGMIAPNMATMLGFITTDAAIESKALQKMLRRATDKSFNQITVDGDTSTNDTVLVLANGASRT 238 (404)
T ss_pred EEEECCeEEEEEEEEcccccCCCchhhhhhheeeCCCCCHHHHHHHHHHHHHhCCCCeeeCCCcCHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhHH
Q 014620 306 SRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRI 385 (421)
Q Consensus 306 ~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtAi~G~DpNWGRI 385 (421)
++|.+ +++++.+|+++|++||++|||+||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||
T Consensus 239 ~~i~~-~~~~~~~f~~aL~~v~~~LAk~IvrDGEGATKliev~V~gA~~~~~A~~iA~sIa~S~LVKTAi~G~DpNWGRI 317 (404)
T TIGR00120 239 KEITE-DSPDFEVFEEALTAVCQELAKMIARDGEGATKFFEVQVKGAKNDEDAKIIARAIAGSSLVKTAVFGQDPNWGRI 317 (404)
T ss_pred CccCC-CCccHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEEeCCCCHHHHHHHHHHhcCCHhHHHHHcCCCCCHHHH
Confidence 88876 55678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcccccceeEEEeCC----EEEeeCCcCCCCCC
Q 014620 386 AAAAGYAGVSFYQNKLRILLGD----SLLMDGGQPLPFDR 421 (421)
Q Consensus 386 laAvG~sg~~~d~~~v~I~~g~----~~v~~~G~~~~~de 421 (421)
+||+||+|++|||++++|+||+ ++||++|++.+|||
T Consensus 318 ~~AiG~sg~~~d~~~v~i~~g~~~~~v~v~~~G~~~~~~e 357 (404)
T TIGR00120 318 IAAAGYSGADVDPENVSVILGDNSEEVVLVDNGVPLEFEE 357 (404)
T ss_pred HHHhcccCCccchhhEEEEECCccceEEEEeCCCCCCCCH
Confidence 9999999999999999999999 99999999999885
No 3
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.
Probab=100.00 E-value=9.1e-143 Score=1082.29 Aligned_cols=345 Identities=51% Similarity=0.803 Sum_probs=336.0
Q ss_pred cCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHH
Q 014620 72 AEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQ 151 (421)
Q Consensus 72 p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~TG~~G~~ 151 (421)
|+||+++|++||||+++ |+||+||+|+.||.+|||||+|+|+||||+|||++|+. +++|||||||||||||||++|++
T Consensus 1 p~Gf~~~g~~aGik~~~-~~Dlali~s~~p~~~AgvFT~N~~~AAPV~~~~~~l~~-~~~ravvvNSGnANA~TG~~G~~ 78 (390)
T cd02152 1 PKGFRAAGVAAGIKKSG-RKDLALIYSDVPATAAGVFTTNKFKAAPVLVSREHLAD-GKARAVVVNSGNANACTGEQGLE 78 (390)
T ss_pred CCeEEEEEEEeecccCC-CCCEEEEEeCCCccEEEEEccCCeeeccchHHHHhhcc-CCceEEEEcCCccccccCHHHHH
Confidence 79999999999999765 89999999999999999999999999999999999985 78999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEEEECC
Q 014620 152 DVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGG 231 (421)
Q Consensus 152 da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~pK~~a~~~~i~g 231 (421)
|+++|++++|+.|+|++++|||+||||||+|||||+|+++||++...|+. ++|++||+||||||||||+++++++++|
T Consensus 79 da~~~~~~~A~~l~i~~~~VlvaSTGVIG~~Lp~~~i~~gi~~~~~~l~~--~~~~~aA~AImTTDt~pK~~~~~~~~~g 156 (390)
T cd02152 79 DAREMAELVAELLGIPEEEVLVASTGVIGEPLPMDKIRAGIPELVASLSE--DGWEAAARAIMTTDTFPKEAAVEVEIGG 156 (390)
T ss_pred HHHHHHHHHHHHhCCCcccEEEeCchhccCCCCHHHHHHhHHHHHHHhCc--ccHHHHHHHHhcCCCCceEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999965 6899999999999999999999999999
Q ss_pred eEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCCCCccccCC
Q 014620 232 TYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSV 311 (421)
Q Consensus 232 ~~v~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~ 311 (421)
++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++++++|.+
T Consensus 157 ~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtv~~lAnG~ag~~~i~~- 235 (390)
T cd02152 157 KTVTIGGIAKGSGMIHPNMATMLGFITTDAAISPELLQDALRRAVDRSFNRITVDGDTSTNDTVLLLANGAAGNPPISE- 235 (390)
T ss_pred EEEEEEEEEcccccCCcchhhhhhheecCCcCCHHHHHHHHHHHHhhCCCCeeECCCcCHHHHHHHHhCCCCCCCCcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhHHHHhhcc
Q 014620 312 DCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAGY 391 (421)
Q Consensus 312 ~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtAi~G~DpNWGRIlaAvG~ 391 (421)
+++++++|+++|.+||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||+||+||
T Consensus 236 ~~~~~~~f~~aL~~v~~~LA~~IvrDGEGATK~i~v~V~gA~s~~~A~~vA~sIa~S~LVKTAi~G~DpNWGRIlaAiG~ 315 (390)
T cd02152 236 EDPDLEEFEEALTEVCLDLAKQIVRDGEGATKLIEVTVTGAASEEDARKVARAIANSPLVKTAIFGEDPNWGRILAAVGY 315 (390)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHccCCCceEEEEEEeCCCCHHHHHHHHHHHcCChHHHHHHhccCCCHHHHHhccCc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccceeEEEeCCEEEeeCCcCCCCCC
Q 014620 392 AGVSFYQNKLRILLGDSLLMDGGQPLPFDR 421 (421)
Q Consensus 392 sg~~~d~~~v~I~~g~~~v~~~G~~~~~de 421 (421)
+|++|||++++|+||+++||++|++.+|||
T Consensus 316 sg~~~d~~~v~i~~~~v~v~~~G~~~~~~e 345 (390)
T cd02152 316 SGVEFDPERVSISLGGVLVVENGEPLDYDE 345 (390)
T ss_pred cCCCcChhhEEEEECCEEEEeCCCCCCCCH
Confidence 999999999999999999999999999985
No 4
>COG1364 ArgJ N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-142 Score=1072.93 Aligned_cols=356 Identities=51% Similarity=0.774 Sum_probs=346.4
Q ss_pred CceecCCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCC
Q 014620 61 PWKQIPGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQ 140 (421)
Q Consensus 61 ~~~~~~ggv~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGn 140 (421)
.|+.+.++++.|+||+++|+++|||+++ |+||+||+|++||++|||||+|+|+||||+|||++|+. +++||||+||||
T Consensus 4 ~~~~~~~~i~~p~Gf~~~g~~aGiK~~g-~~Dl~li~se~~~~aAgVFT~n~~~AAPV~~~~~~l~~-~~~rAiVvNSGn 81 (404)
T COG1364 4 LMPKIAGGITAPKGFLAAGIAAGIKASG-KPDLGLIVSERPASAAGVFTTNKVKAAPVDVSRENLAD-GKLRAIVVNSGN 81 (404)
T ss_pred ccccccCCCCCCccEEEeeeeeccccCC-CCCEEEEEecCCceeEEEEecccccccceehhhHhhcc-CceEEEEEccCC
Confidence 3667789999999999999999999876 89999999999999999999999999999999999996 599999999999
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCc
Q 014620 141 ANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVS 220 (421)
Q Consensus 141 ANA~TG~~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~p 220 (421)
||||||++|++||++|++++|+.|+|++++|+|+||||||+|||||||+.+|+++.++|.. +++|.+||+|||||||+|
T Consensus 82 ANa~TG~~G~~dA~~~a~~~A~~l~~~~~~V~vaSTGVIG~~Lpmdki~~gi~~~~~~l~~-~~~~~~aa~AImTTDT~p 160 (404)
T COG1364 82 ANACTGEQGLKDAREMAEAVAEELGIEEEEVLVASTGVIGERLPMDKILAGIEKLVSDLGS-EDGWLEAAEAIMTTDTVP 160 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcceEEEeeccccCCcCCHHHHHHhHHHHHhhccC-cccHHHHHhhhhccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999975 579999999999999999
Q ss_pred cEEEEEEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhc
Q 014620 221 KSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALAS 300 (421)
Q Consensus 221 K~~a~~~~i~g~~v~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAn 300 (421)
|.+++++.++| +|||+|||||||||||||||||+||+|||+|++..||++|++++++|||||||||||||||||++|||
T Consensus 161 K~~~~~~~~~~-~vti~GiAKGsGMI~PnMATML~Fi~TDA~i~~~~Lq~~L~~~~~~TFN~itVDGDTSTNDtv~llAn 239 (404)
T COG1364 161 KQAAVEAEIGG-TVTIGGIAKGSGMIHPNMATMLAFITTDAAIEPAALQKALRRAVDKTFNMITVDGDTSTNDTVLLLAN 239 (404)
T ss_pred eeEEEEeccCc-eEEEEEEecccccCCcCHHHHHHHhhcCCcCCHHHHHHHHHHHHhccCceEEEcCCCCchhhHhhhhc
Confidence 99999999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCC
Q 014620 301 GLSRSSRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDP 380 (421)
Q Consensus 301 G~a~~~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtAi~G~Dp 380 (421)
|++|+++|++.. +++++|+++|.+||++||||||||||||||||||+|+||+|++|||+|||+|++||||||||||+||
T Consensus 240 G~~g~~~i~~~~-~~~~~f~~al~~v~~~LAk~IvrDGEGATK~ieV~V~GA~~~~~A~~iA~~Ia~S~LVKTAvfG~Dp 318 (404)
T COG1364 240 GASGNPEITEES-PDLAEFKEALTEVCQDLAKQIVRDGEGATKLIEVTVTGAASEEDARVIARAIANSPLVKTAVFGSDP 318 (404)
T ss_pred CccCCccccccC-ccHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEEeCCCCHHHHHHHHHHHhcChhhhhhhhcCCC
Confidence 999999998854 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhcccCcccccceeEEEeCCEEEeeCCcCCCCCC
Q 014620 381 NWGRIAAAAGYAGVSFYQNKLRILLGDSLLMDGGQPLPFDR 421 (421)
Q Consensus 381 NWGRIlaAvG~sg~~~d~~~v~I~~g~~~v~~~G~~~~~de 421 (421)
|||||+||+||||+++||++|+|+|+++.++.+|+|.+|+|
T Consensus 319 NWGRIi~AvG~sg~~~d~~~i~i~~~~~~~~~~G~~~~~~~ 359 (404)
T COG1364 319 NWGRILAAVGYSGAEVDPDKISISFGGIVVADDGEPLPFYE 359 (404)
T ss_pred cHHHHHHhccccccccChhhEEEEECCEEEEeCCCCChhhH
Confidence 99999999999999999999999999999999999998874
No 5
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=100.00 E-value=9.7e-143 Score=1080.77 Aligned_cols=343 Identities=52% Similarity=0.797 Sum_probs=296.1
Q ss_pred eEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHH
Q 014620 75 FKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVV 154 (421)
Q Consensus 75 F~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~TG~~G~~da~ 154 (421)
|+++|++||||+++ |+||+||+||.||.+|||||+|+|+||||+|||++|..++++||||+||||||||||++|++|++
T Consensus 1 F~a~gv~aGiK~~~-~~Dlali~s~~p~~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~da~ 79 (388)
T PF01960_consen 1 FRAAGVAAGIKKSG-RLDLALIVSDVPASAAGVFTTNRVKAAPVLVSREHLAKGGRIRAVVVNSGNANACTGEQGLEDAE 79 (388)
T ss_dssp EEEEEE--SSSTTS-SS-EEEEEECSEEEEEEEEE--SS--HHHHHHHHHHHCCSBEEEEEEEESE---S-HHHHHHHHH
T ss_pred CEEEEEEEeeecCC-CCCEEEEEeCCCceEEEEEecCccccccchHHHHhhccCCceEEEEEccCCCCCCCcHHHHHHHH
Confidence 99999999999876 89999999999999999999999999999999999944579999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEEEECCeEE
Q 014620 155 DCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYI 234 (421)
Q Consensus 155 ~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~pK~~a~~~~i~g~~v 234 (421)
+|++.+|+.|+|++++|||+||||||+|||||+|+++||.+.++|+. ++|+++|+||||||||||+++++++++|++|
T Consensus 80 ~~~~~~A~~l~~~~~~VlvaSTGVIG~~lp~~~i~~~i~~l~~~L~~--~~~~~aA~AImTTDt~pK~~~~~~~~~g~~v 157 (388)
T PF01960_consen 80 AMAEAVAEALGIPPEEVLVASTGVIGEPLPMDKIRAGIPALAESLSS--DGGEDAARAIMTTDTFPKEAAVEVEIGGKTV 157 (388)
T ss_dssp HHHHHHHHHHTCHGGGEEEEEESESS----HHHHHHHHHHHHHCSSS--CHHHHHHHHT-SS-SS-EEEEEEEEETTECE
T ss_pred HHHHHHHHHhCCCcccEEEeccccccCcCCHHHHHHhHHHHHHHhCC--CcHHHHHHHHcCCCCCCeEEEEEEEEcCCEE
Confidence 99999999999999999999999999999999999999999999976 4999999999999999999999999999999
Q ss_pred EEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCCCCccccCCCch
Q 014620 235 RVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSVDCN 314 (421)
Q Consensus 235 ~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~~~~ 314 (421)
+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++++++|.+ +++
T Consensus 158 ~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llAnG~sg~~~i~~-~~~ 236 (388)
T PF01960_consen 158 TIGGIAKGSGMIHPNMATMLAFITTDAAISPDALQKALRRAVDRSFNRISVDGDTSTNDTVLLLANGASGNVPITE-GDP 236 (388)
T ss_dssp EEEEEEE-SSS----EE--EEEEEEECB--HHHHHHHHHHHHHHTGGGBESSS---SS-EEEEEEEETTEBS-H-T-TST
T ss_pred EEEEEECCccccCCchhhhheeeeeCCCCCHHHHHHHHHHHHHhccCCceecCCCCchhheeeeeCcCCCCCCCCC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877 788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhHHHHhhcccCc
Q 014620 315 EAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAGYAGV 394 (421)
Q Consensus 315 ~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtAi~G~DpNWGRIlaAvG~sg~ 394 (421)
++++|++||++||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||++|+||||+
T Consensus 237 ~~~~F~~aL~~v~~~LA~~Iv~DGEGAtKli~v~V~GA~s~~~A~~iAraIa~S~LVKtAi~G~DpNWGRI~aA~G~sg~ 316 (388)
T PF01960_consen 237 DYEEFQEALTEVCQDLAKQIVRDGEGATKLIEVTVTGARSEEDARKIARAIANSPLVKTAIFGEDPNWGRILAAVGYSGV 316 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSTT-SSEEEEEEEEESSHHHHHHHHHHHHT-HHHHHHHHTT---HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCHHHHHHHHHHHhcCHHHHHHHhcCCCCHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEeCCEEEeeCCcCCCCCC
Q 014620 395 SFYQNKLRILLGDSLLMDGGQPLPFDR 421 (421)
Q Consensus 395 ~~d~~~v~I~~g~~~v~~~G~~~~~de 421 (421)
+|||++++|+||+++|+++|++.+|||
T Consensus 317 ~~d~~~v~i~~~~~~v~~~G~~~~~~e 343 (388)
T PF01960_consen 317 DFDPEKVDIYFGGVPVFENGQPVPFDE 343 (388)
T ss_dssp TS-TTC-EEEETTEEEEETTEESTCCH
T ss_pred CcccceeEEEECCEEEEeCCCCCcCCH
Confidence 999999999999999999999999885
No 6
>KOG2786 consensus Putative glutamate/ornithine acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-120 Score=888.74 Aligned_cols=361 Identities=62% Similarity=0.880 Sum_probs=340.2
Q ss_pred CCCCCceecCCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCC--CCCeeEE
Q 014620 57 LPEGPWKQIPGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDS--SKTARAV 134 (421)
Q Consensus 57 ~p~~~~~~~~ggv~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~--~~~~rAv 134 (421)
||+ +-++++..-+.|+||...++++|+|+.| |+||+||.+++||++|+|||+|+|+||||++||+.|+. +..+|+|
T Consensus 15 m~~-~t~~i~ksgt~pqgf~l~~~asGvkanG-kkDLa~v~~srp~~AAaVFTtN~f~AAPV~~skkvLet~~gK~i~av 92 (431)
T KOG2786|consen 15 MPD-KTKFISKSGTYPQGFSLNGMASGVKANG-KKDLALVTCSRPAVAAAVFTTNVFAAAPVVYSKKVLETSGGKTIRAV 92 (431)
T ss_pred CCc-cceecccCCCCCCceeeccchhhhhhcC-ccceEEEecCCcchhheeeecccccccceehhhhHHhccCCCceeEE
Confidence 444 4567778889999999999999999976 77999999999999999999999999999999999975 3569999
Q ss_pred EEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHc
Q 014620 135 LINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAIT 214 (421)
Q Consensus 135 vvNSGnANA~TG~~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AIm 214 (421)
|+||||||+.||+.||+|++.|...++..+...++++||+|||||||||.||||..+||.++++++++.+.|+.+|+||+
T Consensus 93 viNsGcANavTGd~G~~Daq~~v~~i~t~~~~~~~s~LvmSTGVIGQRlk~dki~~gl~~~ve~~gs~~e~w~~aA~aIc 172 (431)
T KOG2786|consen 93 VINSGCANAVTGDAGYQDAQDCVGSIATLLKVKPESVLVMSTGVIGQRLKKDKILHGLPTLVESRGSSVEEWDSAAVAIC 172 (431)
T ss_pred EEcCCcccccccccchhHHHHHHHHhhHhhccCCCceEEEecchhhhHHhHHHHhhhhHHHHHhccccHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhh
Q 014620 215 TTDLVSKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDT 294 (421)
Q Consensus 215 TTDt~pK~~a~~~~i~g~~v~i~GiAKGsGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDt 294 (421)
|||||||.+++|++++|.++||+|||||+|||||||||||+||+||++|+.+.||+||+.++++|||+||||||||||||
T Consensus 173 TTDtfpKlV~~e~~v~G~~yrv~GmAKGaGMI~PNmATlLG~ivTDapiesda~rkml~~AvnrSFN~IsvDGDtSTNDT 252 (431)
T KOG2786|consen 173 TTDTFPKLVAVESQVGGIKYRVGGMAKGAGMIHPNMATLLGVIVTDAPIESDAWRKMLKVAVNRSFNQISVDGDTSTNDT 252 (431)
T ss_pred cccccchhhheeeecccEEEEeecccccCcccCccHHhhhheeeccCcccHHHHHHHHHHHhccccceEEecCCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhh
Q 014620 295 VIALASGLSRSSRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAA 374 (421)
Q Consensus 295 vlllAnG~a~~~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~LVKtA 374 (421)
+..||||++|.++|++ ++++++++|.++++++|+|||.||||||||||||||+|+||.+++||++|||+|.||.|||||
T Consensus 253 i~~LAnGa~g~~eIs~-~sk~~~q~~~~vt~~aQ~LAklvvrDGEGaTkfvtV~Vkga~~e~dAa~iA~sisnS~LVKtA 331 (431)
T KOG2786|consen 253 IIALANGASGSPEISS-NSKEAAQLQACVTAVAQGLAKLVVRDGEGATKFVTVTVKGAETEADAAKIARSISNSSLVKTA 331 (431)
T ss_pred hhhhhccCCCCccccc-cCHHHHHHHHHHHHHHHHHHHHheecCCCceEEEEEEEccccchHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999988 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChhHHHHhhcccCc--ccccceeEEEe------CCEEEeeCCcCCCCC
Q 014620 375 VYGRDPNWGRIAAAAGYAGV--SFYQNKLRILL------GDSLLMDGGQPLPFD 420 (421)
Q Consensus 375 i~G~DpNWGRIlaAvG~sg~--~~d~~~v~I~~------g~~~v~~~G~~~~~d 420 (421)
+||+|||||||+||+||+|+ .+|+.+++++| .-.++.+||.|.+.|
T Consensus 332 ~yG~DaNWGRIlcA~GYag~~~~~d~~kisvsFi~~d~~ePLkl~~nG~pq~vd 385 (431)
T KOG2786|consen 332 VYGRDANWGRILCAAGYAGVSFQMDKLKISVSFILMDSGEPLKLDRNGAPQNVD 385 (431)
T ss_pred HhcCCCchhHhhhhhcccccccccCcccceEEEEEcCCCCcceeccCCCccccc
Confidence 99999999999999999999 66777777766 124455555555444
No 7
>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins. DmpA is an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. The superfamily also contains an enzyme, endo-type 6-aminohexanoate-oligomer hydrolase, that have been shown to be involved in nylon degradation. Proteins in this superfamily undergo autocatalytic c
Probab=100.00 E-value=5.3e-59 Score=456.17 Aligned_cols=243 Identities=24% Similarity=0.334 Sum_probs=222.3
Q ss_pred cCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCee-EEEEecCCccccCcHHHH
Q 014620 72 AEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTAR-AVLINAGQANAATGDAGY 150 (421)
Q Consensus 72 p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~r-AvvvNSGnANA~TG~~G~ 150 (421)
|+||++++.++|+|+++ |.||+||+++.||.+|++||+|+++|+ +||++++. +++| +||+|||| +|+
T Consensus 1 ~~G~~vg~~~~g~~~~~-~tgvtvI~~~~~~~aa~~~t~~~~~a~---~~r~~~~~-g~~~~aIvlnsG~-------~g~ 68 (286)
T cd00123 1 PRGVVVGTAPVGEADDG-RDGFTVIASTAPATVSVVFTRGRFAGP---LCREAVAG-GQFRHGVVVLARN-------EGE 68 (286)
T ss_pred CCcEEEEEEEeccCCCC-CCCEEEEEeCCCcEEEEEEcCCCcccc---ChHHHhcC-CCceeEEEEcCCC-------hhH
Confidence 58999999999999754 789999999999999999999999665 99999975 6788 99999999 899
Q ss_pred HHHHHHHHHHHHHhCCC------CCcEEEeccccCCccc-ChHHHHhhHHHHHhhcCCCCccHHH------HHHHHcCCC
Q 014620 151 QDVVDCANTVAMLLKMR------SEEVLIESTGVIGQRI-KKDALLNSLPKLVNSLSSSTEGADS------AAVAITTTD 217 (421)
Q Consensus 151 ~da~~~a~~~A~~Lgi~------~~~VlvaSTGVIG~~L-pmdki~~~i~~l~~~L~~~~~~~~~------aA~AImTTD 217 (421)
.|+++++..++++++++ ..+|+++|||+||+++ ||++++++++++.++++. ++|.+ ++.+|||||
T Consensus 69 ~da~~~~~~~a~~~~~~~~~~~~~~~v~vastgdig~~~~~~~~~~~~~~~A~~~a~~--~~~~~G~~gag~a~ai~ttd 146 (286)
T cd00123 69 ENAREVREAVARARGLPRTGFAEEGEXLIASTYDIGRQYTPXESIRAHLRTALWPAGE--GGFDRGRASAGAARAIXTTD 146 (286)
T ss_pred HHHHHHHHHHHHHcCCCccCCccccccceEEEEEecCCCCCcccHHHHHHHHHHhccC--CChhccCccHHHHHHHhhcC
Confidence 99999999999999998 8899999999999999 999999999999999965 35666 999999999
Q ss_pred CCccEEEEEEEECCeEEEEeEEeccCCcCC-----------------------CcccchhhhhccCCCCCHHHHHHHHHH
Q 014620 218 LVSKSVAVESQVGGTYIRVGGMAKGSGMIH-----------------------PNMATMLGVVTTDASVDSDVWRKMVKV 274 (421)
Q Consensus 218 t~pK~~a~~~~i~g~~v~i~GiAKGsGMI~-----------------------PnMATML~fI~TDA~i~~~~L~~~L~~ 274 (421)
++||.+++++ + .++|+||+||+|||| |||+|||+||+|||+|++..||++|+
T Consensus 147 ~g~k~as~~~--~--~~tIggi~kgngmi~~~~~~~~~~~g~~~~~~~~~~~~p~maTmL~~i~TDA~l~~~~l~r~~~- 221 (286)
T cd00123 147 TGPGEARRSV--G--GATIVAIVKGNGXLEIVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAELDRLAR- 221 (286)
T ss_pred CCccceEEEE--C--CEEEEEEEEeccccccccccccccccccccccccCCCCCCCccEEEEEEeCCcCCHHHHHHHHH-
Confidence 9999999875 3 499999999999999 99999999999999999999999999
Q ss_pred HHhcccCceeeCCCCCchhhhhhhhcCCCCCccccCC----CchhHHHHHHHHHHHHHHHHHH
Q 014620 275 AVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSV----DCNEAKQLQACLDAVMQGLAKS 333 (421)
Q Consensus 275 av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~----~~~~~~~F~~aL~~v~~~LAk~ 333 (421)
.+++|||||+|||||||||||++||||.++++..... .+.++..|+++|.++|++|++.
T Consensus 222 ~a~~~fnri~vdg~~stgDtv~~lAtg~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~l~~~ 284 (286)
T cd00123 222 VXDRTFNRVSIDTDTSTGDTAVAFATGLAGLPTTPGSSRGRLEVDAGEFEEAAHTAALAAVKD 284 (286)
T ss_pred hhhcccceeeecCCCCCCCEEEEEccCCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999986432211 1336889999999999999985
No 8
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=82.53 E-value=2.3 Score=37.89 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhhcchhhhhhhhCC-CCChhHHHHhhcccC
Q 014620 354 SEAEAAKIARSVASSSLVKAAVYGR-DPNWGRIAAAAGYAG 393 (421)
Q Consensus 354 s~~~A~~iAraVa~S~LVKtAi~G~-DpNWGRIlaAvG~sg 393 (421)
+++.|...=..|++. +|.. .+|||||++-+.-++
T Consensus 64 ~~~~~~~~f~~v~~~------lf~dg~inWGRIval~~f~~ 98 (144)
T cd06845 64 SPDNAYEVFQEVARE------LFEDGGINWGRIVALFAFGG 98 (144)
T ss_pred CcchHHHHHHHHHHH------HhccCCCChHHHHHHHHHHH
Confidence 455555555555555 3444 799999998866544
No 9
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=79.55 E-value=4 Score=33.85 Aligned_cols=19 Identities=42% Similarity=0.868 Sum_probs=13.8
Q ss_pred hhC-CCCChhHHHHhhcccC
Q 014620 375 VYG-RDPNWGRIAAAAGYAG 393 (421)
Q Consensus 375 i~G-~DpNWGRIlaAvG~sg 393 (421)
+|. +.+|||||++=+..++
T Consensus 42 lf~d~~inWGRIval~~f~~ 61 (101)
T PF00452_consen 42 LFEDGGINWGRIVALFAFAG 61 (101)
T ss_dssp HTTTSSTCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHH
Confidence 344 4899999998776544
No 10
>cd02253 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.
Probab=78.66 E-value=4.4 Score=42.07 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=40.0
Q ss_pred CcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCC
Q 014620 248 PNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLS 303 (421)
Q Consensus 248 PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a 303 (421)
|.+-|.+.+|.|||++++..|+++-+++-+-==-.|+- +.+.--|+++.|++|..
T Consensus 227 ~~~nStI~VVATDApL~~~Ql~RlA~rA~~GlAR~g~p-~~~~dGD~vfa~ST~~~ 281 (339)
T cd02253 227 PDDGSIIIVIATDAPLLPRQLKRLAKRAPLGLARTGSF-GGNGSGDIFLAFSTANT 281 (339)
T ss_pred CCCCCEEEEEEeCCcCCHHHHHHHHHHhhccccccccC-CCCCCcCeeEEEecccc
Confidence 46789999999999999999999998886631111222 12333468999999864
No 11
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=78.57 E-value=3.7 Score=34.83 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHhhcchhhhhhhhCCC-CChhHHHHhhcccC
Q 014620 354 SEAEAAKIARSVASSSLVKAAVYGRD-PNWGRIAAAAGYAG 393 (421)
Q Consensus 354 s~~~A~~iAraVa~S~LVKtAi~G~D-pNWGRIlaAvG~sg 393 (421)
+...+...=..|+.. +|... -|||||++-..-+|
T Consensus 26 ~~~~~~~~f~~Va~~------lf~dg~inWGRIval~~F~~ 60 (100)
T smart00337 26 TPGTAIELFGEVATE------LFSDGNINWGRVVALLSFGG 60 (100)
T ss_pred CcccHHHHHHHHHHH------HHccCCCCHHHHHHHHHHHH
Confidence 445555555556554 35433 69999998776544
No 12
>COG3191 DmpA L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.25 E-value=2.9 Score=43.45 Aligned_cols=224 Identities=19% Similarity=0.214 Sum_probs=112.0
Q ss_pred CccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCC---CCeeEEEEecCCcccc
Q 014620 68 GVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSS---KTARAVLINAGQANAA 144 (421)
Q Consensus 68 gv~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~---~~~rAvvvNSGnANA~ 144 (421)
.+|-.+|++++...- ++.+ -+--+.+|.++.++ +|-...+-++|+.-.-..+... ..+.+|+.-=|.+|-.
T Consensus 16 ~ITDV~Gi~VGh~T~-~~~~-~~TGVTvILp~~ga----~~~v~v~gg~p~~ngt~~l~p~~~v~evgai~lpg~stngl 89 (348)
T COG3191 16 AITDVPGIKVGHVTL-IRGD-VRTGVTVILPHPGA----VAAVKVRGGAPGTNGTGLLTPLNQVEEVGAIVLPGGSTNGL 89 (348)
T ss_pred ceecCCceEeeeEec-ccCC-ccCceEEEecCCCc----ccccccccccccccCCCccCccceeeecCeEEeccceeccc
Confidence 467788998875431 2211 24567888887654 4444555677776443334321 2456788777777754
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcE------EEecccc-----CC-cccChHHHHhhHHHHHhh-cCCCCccHHHHHH
Q 014620 145 TGDAGYQDVVDCANTVAMLLKMRSEEV------LIESTGV-----IG-QRIKKDALLNSLPKLVNS-LSSSTEGADSAAV 211 (421)
Q Consensus 145 TG~~G~~da~~~a~~~A~~Lgi~~~~V------lvaSTGV-----IG-~~Lpmdki~~~i~~l~~~-L~~~~~~~~~aA~ 211 (421)
-=..|.+.+.+..+...+.-.. ...| +|+=+.+ |+ ++.--|-..+++..+-.. .. ++.-- |-
T Consensus 90 ~aa~~v~~~l~~r~~g~~~~~~-g~~vpiv~~avv~d~~dG~lnd~~~~~p~~~~g~~A~~aA~~g~v~---~G~VG-AG 164 (348)
T COG3191 90 AAADGVMRALEERERGFENPDG-GRKVPIVPNAVVFDLNDGGLNDIGGHHPTRDHGYAALKAAGTGPVE---EGSVG-AG 164 (348)
T ss_pred hHHHHHHHHHHHhhcccccCCC-CceeeeeeccEEEEccCCCccccccCCCCHHHHHHHHHhccCCCcc---ccCcc-cc
Confidence 4334444333333332221100 0011 1111211 11 111222223333222111 10 01000 11
Q ss_pred HHcCCCCCccE---EEEEEEECCeE-EEEeEEecc-----------------------CCc--CCCcccchhhhhccCCC
Q 014620 212 AITTTDLVSKS---VAVESQVGGTY-IRVGGMAKG-----------------------SGM--IHPNMATMLGVVTTDAS 262 (421)
Q Consensus 212 AImTTDt~pK~---~a~~~~i~g~~-v~i~GiAKG-----------------------sGM--I~PnMATML~fI~TDA~ 262 (421)
.=||+=.|++- ++++++.+++. ++++--.-| +-| .-|-+.|.+.+|.|||+
T Consensus 165 tGata~~fKGG~GsASr~v~~g~~v~~~v~vn~~gn~g~~~~~~l~g~p~g~~~~~~~~~~~~~~~~~gTtI~vvATDap 244 (348)
T COG3191 165 TGATAFGFKGGLGSASRRVENGGTVGATVGVNVLGNFGDRRTLLLWGAPVGFDGRGPPPRAEAGGDEKGTTIGVVATDAP 244 (348)
T ss_pred cceeeeeecCcccceEEEeccCceEEEEEEEeecccccccCCceeccccccccccCCCccccCCCCCCCCEEEEEEcCCc
Confidence 11344455442 45666655443 333322211 112 44556799999999999
Q ss_pred CCHHHHHHHHHHHHhcccCceeeCCCCC-chhhhhhhhcCCC
Q 014620 263 VDSDVWRKMVKVAVNRSFNQITVDGDTS-TNDTVIALASGLS 303 (421)
Q Consensus 263 i~~~~L~~~L~~av~~SFN~ItVDGDtS-TNDtvlllAnG~a 303 (421)
+++..||++-+++-+ -|-|.-=-..++ --|+++.||+|..
T Consensus 245 L~~aq~~RlA~rA~~-GlARtg~p~~~~~dGD~~fAfsTg~~ 285 (348)
T COG3191 245 LTKAQLKRLARRAHD-GLARTGRPAHTGLDGDTAFAFSTGNH 285 (348)
T ss_pred CCHHHHHHHHHHhhc-chheecccccCCCCCCEEEEEeccCc
Confidence 999999998888755 344432233333 4579999999963
No 13
>cd02252 nylC_like nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucl
Probab=72.15 E-value=5.8 Score=39.83 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=107.2
Q ss_pred cccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCC---CCCeeEEEEecCCccccCc
Q 014620 70 TAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDS---SKTARAVLINAGQANAATG 146 (421)
Q Consensus 70 ~~p~GF~aag~~aGiK~~~~k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~---~~~~rAvvvNSGnANA~TG 146 (421)
+-.+|+++..... .. .+--+.+|..+.+. .||++=+|-.++ ..--..|+. -.++.||++--|-+
T Consensus 2 tDV~Gv~VGh~t~--~~--~~TGvTvIl~~~g~-~agvdvrgG~pG---t~et~ll~p~~~v~~v~aIvLtggsa----- 68 (260)
T cd02252 2 TDVPGIRVGHATD--EE--GLTGVTVILCPEGA-VAGVDVRGGAPG---TRETDLLDPENLVQKVHAIVLSGGSA----- 68 (260)
T ss_pred cCCCCcEEeceEc--CC--CCceeEEEEeCCCC-eEEEEecCCCcc---ccchhhcCcccccccccEEEEeCCch-----
Confidence 4556888875543 22 25688999998765 677999996543 333333432 24678888765553
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC---c-EEEe--------ccccCCcccChHHHHhhHHHHH-hhcCCCCccHHHHHHHH
Q 014620 147 DAGYQDVVDCANTVAMLLKMRSE---E-VLIE--------STGVIGQRIKKDALLNSLPKLV-NSLSSSTEGADSAAVAI 213 (421)
Q Consensus 147 ~~G~~da~~~a~~~A~~Lgi~~~---~-Vlva--------STGVIG~~Lpmdki~~~i~~l~-~~L~~~~~~~~~aA~AI 213 (421)
-|++.+.-+.+.+.|. ++... . |=+. .-|=|-.+...+-..+++..+. .... ++.--+-..-
T Consensus 69 -~GL~aa~gv~~~l~e~-g~g~~~~~~~vPIV~~a~~~Dl~~~d~~~~p~~~~g~~A~~~A~~~~v~---eG~vGAGtGa 143 (260)
T cd02252 69 -FGLAAADGVMRALEER-GVGFPVGVPVVPIVPAAVLFDLGGGDKRWRPDAALGYAAAEAAGPGPFP---LGRVGAGTGA 143 (260)
T ss_pred -hhHHHHHHHHHHHHHh-CCCCCCCCceecEeCeEEEeccccCCCCCCCCHHHHHHHHHhccCCCcc---ccCcccccCc
Confidence 6888888888888776 43311 1 1111 1111212233333333333332 1010 0100111111
Q ss_pred cCCCC----CccE--EEEEEEECCeEEEEeEEecc--CCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceee
Q 014620 214 TTTDL----VSKS--VAVESQVGGTYIRVGGMAKG--SGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITV 285 (421)
Q Consensus 214 mTTDt----~pK~--~a~~~~i~g~~v~i~GiAKG--sGMI~PnMATML~fI~TDA~i~~~~L~~~L~~av~~SFN~ItV 285 (421)
|+-. --|. -+....++ +.++|+.+.-= =| -|.|.+|.||+++++..|+++-+++-+ .+-|---
T Consensus 144 -~~g~~~~~~~KGG~GsaS~~~~-~~~tVgalV~vN~~G------nTtI~vVaTdapL~~~ql~RlA~~A~~-GlaR~i~ 214 (260)
T cd02252 144 -TAGKVLDRALKGGLGSASIRLG-DGVTVGALVVVNAVG------NTTIGVVATDAALTKAEAKRLASMAHD-GLARAIR 214 (260)
T ss_pred -cccCcccccccCcCceeEEEeC-CCcEEEEEEEEECCC------CcEEEEEEeCCcCCHHHHHHHHHHhhh-hheeecc
Confidence 1111 0110 11122223 23454443211 11 699999999999999999999888865 2332211
Q ss_pred CCCC-CchhhhhhhhcCCC
Q 014620 286 DGDT-STNDTVIALASGLS 303 (421)
Q Consensus 286 DGDt-STNDtvlllAnG~a 303 (421)
-..| .--|+++.|++|..
T Consensus 215 p~h~~~dGD~vfa~ST~~~ 233 (260)
T cd02252 215 PVHTPFDGDTVFALATGEV 233 (260)
T ss_pred ccCCCCCCCEEEEEEcCCc
Confidence 1111 22478999999864
No 14
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=67.41 E-value=8.5 Score=37.51 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcchhhhhhhhCCCCChhHHHHhh
Q 014620 357 EAAKIARSVASSSLVKAAVYGRDPNWGRIAAAA 389 (421)
Q Consensus 357 ~A~~iAraVa~S~LVKtAi~G~DpNWGRIlaAv 389 (421)
.|...=.+|++. +|...-|||||++=.
T Consensus 99 ~a~~~F~~Va~e------lF~DGiNWGRIVaLf 125 (213)
T TIGR00865 99 TARQSFFQVAAE------LFRDGVNWGRIVAFF 125 (213)
T ss_pred cHHHHHHHHHHH------HhcCCCCHHHHHHHH
Confidence 355555566644 565569999998744
No 15
>PF03576 Peptidase_S58: Peptidase family S58 ; InterPro: IPR005321 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S58 (DmpA aminopeptidase family, clan PB(S)). The protein fold of the peptidase unit for members of this family resembles that of archaean proteasome subunit B, the type example of clan PB. The type example is aminopeptidase DmpA from OOchrobactrum anthropi. This family also contains proteins that have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the family. L-aminopeptidase D-Ala-esterase/amidase (DmpA) from O. anthropi releases the N-terminal L and/or D-Ala residues from peptide substrates. This is the only known enzyme to liberate N-terminal amino acids with both D and L stereospecificity. DmpA active form is an alphabeta heterodimer, which results from a putative autocatalytic cleavage of an inactive precursor polypeptide. DmpA shows structural homology to N-terminal nucleophile (Ntn) hydrolase family members, and may work by a similar catalytic mechanism, however their secondary structure elements differ significantly [].; PDB: 2DRH_D 3N5I_D 3N33_A 3NFB_A 3N2W_C 3NDV_D 1B65_C 3AXG_O 3S3U_A.
Probab=50.53 E-value=10 Score=39.17 Aligned_cols=219 Identities=20% Similarity=0.234 Sum_probs=105.1
Q ss_pred CCccccCceEEeeeEeecccCCCCCcEEEEEe------CCCceEEEEecCCCccccchhchHhhcCCCCCe-eEEEEecC
Q 014620 67 GGVTAAEGFKAAGIYAGVRAKGEKPDVALVLC------DVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTA-RAVLINAG 139 (421)
Q Consensus 67 ggv~~p~GF~aag~~aGiK~~~~k~DLali~s------d~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~-rAvvvNSG 139 (421)
+.+|-.+|++++...- .....+--+.+|.. +.+ ..|||+-+| .+|=..--..|...+.+ ++|++-.|
T Consensus 2 N~ITDV~Gv~VGh~t~--~~~~~~TGvTvIl~~~~~~~~~~-~~agvdvrg---G~p~tret~~l~p~~~v~~~I~Ltgg 75 (326)
T PF03576_consen 2 NAITDVPGVRVGHATD--EDGEARTGVTVILPHGGNVFPEG-ATAGVDVRG---GAPGTRETDLLDPLGLVETAIVLTGG 75 (326)
T ss_dssp SSGGGSTT-EEEEEEE--EETTEEEEEEEEETTTTTTTTEE-EEEEEEEEE---ESS-ECSHHHHHHHSEEESEEEEEEG
T ss_pred CccccCCCcEEEeEEC--CCCCcCcceEEEEeCCCCCCCCC-ceEEEEeec---CCccccchhhhCcCCceeeeEEEeCC
Confidence 4678888999885544 21112456788888 433 467899999 55544444445433333 36766555
Q ss_pred CccccCcHHHHHHHHHHHHHHHHHh-CC---CCCcE-EEecc--ccCC----cccChHHHHhhHHHHHhh-cCCCCccHH
Q 014620 140 QANAATGDAGYQDVVDCANTVAMLL-KM---RSEEV-LIEST--GVIG----QRIKKDALLNSLPKLVNS-LSSSTEGAD 207 (421)
Q Consensus 140 nANA~TG~~G~~da~~~a~~~A~~L-gi---~~~~V-lvaST--GVIG----~~Lpmdki~~~i~~l~~~-L~~~~~~~~ 207 (421)
.| -|+ .+.-+.+.+.|.- ++ ...-| +|+.| ++|= ....-+-..+++..+... .. ++.-
T Consensus 76 sa------~Gl-aa~gv~~~l~e~~~~~~~~~~~~vPIV~~~~Da~L~Dl~~~~~~~~~g~~A~~~A~~~~~~---eG~V 145 (326)
T PF03576_consen 76 SA------FGL-AADGVMRWLEERGIGIFDTGGGVVPIVPECNDAVLFDLRGGHVTAEMGYAALEAASSGPVA---EGNV 145 (326)
T ss_dssp GG------HHH-HHHHHHHHHHHHTTTCSSSCTCCC-EEEEE--TTTS-CTGTSSCHHHHHHHHHHHBSSCEE---EBSS
T ss_pred ch------HHH-HHHHHHHHHHHhCCCcCCCCCceeeEEeccCccEeeccccCCCCHHHHHHHHHHhhhcchh---ccCc
Confidence 43 677 6666677766662 11 11111 22221 3321 111122233333332111 00 0100
Q ss_pred HHHHHHcCCCCCccE----EEEEEEECCeEEEEeEEe----------------ccCCc-------------CCCcccchh
Q 014620 208 SAAVAITTTDLVSKS----VAVESQVGGTYIRVGGMA----------------KGSGM-------------IHPNMATML 254 (421)
Q Consensus 208 ~aA~AImTTDt~pK~----~a~~~~i~g~~v~i~GiA----------------KGsGM-------------I~PnMATML 254 (421)
-|-... |.=.+ |- +++.+..+++.++|+-+. -|--+ -.|..-|.+
T Consensus 146 GAGtGa-~~~~~-KGGiGtASr~~~~~~~~~~VGaLV~vN~G~v~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~nTtI 223 (326)
T PF03576_consen 146 GAGTGA-TCGGF-KGGIGTASRVVGDGGGGYTVGALVVVNAGDVGDLRIAGVPVGRELGGEDPPDAEEAEAPPPGQNTTI 223 (326)
T ss_dssp GGGTT--EETTE-E-EEEEEEEEEEETTEEEEEEEEEEEE-SEGGGEEETTBEHTTTTCTCCHHHHCCCCHSS-SSBEEE
T ss_pred ccccCc-EeccC-CCcCcceeEEeccCCCceEEEEEEEECCCCCCCceECCeecchhhccccccccccccccCCCCCCEE
Confidence 111111 11111 21 334555445556655432 12101 133457999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhhcCCCC
Q 014620 255 GVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSR 304 (421)
Q Consensus 255 ~fI~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~ 304 (421)
.+|.|||++++..|+++-+++-+-==-.|.+=+..| -|+++.|++|...
T Consensus 224 ~vVaTdApL~~~ql~RlA~~a~~GlAR~ip~ht~~d-GD~~fA~ST~~~~ 272 (326)
T PF03576_consen 224 GVVATDAPLSKAQLKRLARRAHDGLARTIPVHTHGD-GDIVFAFSTGEVP 272 (326)
T ss_dssp EEEEEES---HHHHHHHHHHHHHHHHHTTS-S-TTB-EEEEEEEEEEEEE
T ss_pred EEEEECCcCCHHHHHHHHHHhhcchhcccCCccCCC-CCEEEEEecCCCC
Confidence 999999999999999998877542111233311111 3789999998754
No 16
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=41.35 E-value=35 Score=30.00 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.9
Q ss_pred ceEEEEEEeCCCCHHHHHHHHHHhhc
Q 014620 342 TCLIEVRVTGANSEAEAAKIARSVAS 367 (421)
Q Consensus 342 TKli~V~V~GA~s~~~A~~iAraVa~ 367 (421)
.-+++++|-+|.|+|.|.+|||+.+.
T Consensus 70 gL~l~mkVfnAes~EHA~RIAKs~iG 95 (102)
T PF04475_consen 70 GLILEMKVFNAESEEHAERIAKSEIG 95 (102)
T ss_pred EEEEEEEEeecCCHHHHHHHHHHHHh
Confidence 35689999999999999999999864
No 17
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=36.58 E-value=50 Score=28.27 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 014620 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (421)
Q Consensus 145 TG~~G~~da~~~a~~~A~~Lgi~~~~Vlva 174 (421)
+.++=.+-+.++++.+++.||++++.|.|.
T Consensus 70 ~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 70 SRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 456677888999999999999999999984
No 18
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=33.27 E-value=35 Score=33.17 Aligned_cols=20 Identities=45% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 014620 347 VRVTGANSEAEAAKIARSVA 366 (421)
Q Consensus 347 V~V~GA~s~~~A~~iAraVa 366 (421)
|..+||.||++||..||.+|
T Consensus 79 i~ctgA~se~~ar~aark~a 98 (200)
T KOG3302|consen 79 IVCTGAKSEDSARLAARKYA 98 (200)
T ss_pred EEEeccCCHHHHHHHHHHHH
Confidence 67899999999999999886
No 19
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=30.62 E-value=75 Score=30.61 Aligned_cols=93 Identities=18% Similarity=0.348 Sum_probs=64.2
Q ss_pred CCcEEEEEeCCCceEEEEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHHHHHHHHHHHh---CC
Q 014620 90 KPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLL---KM 166 (421)
Q Consensus 90 k~DLali~sd~pa~~AgvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~TG~~G~~da~~~a~~~A~~L---gi 166 (421)
..||-.+..+-|- +-|-..+|++ ++.| |+. .+.-++|--||.- .|||.+-.+|.++..+.+++.| |+
T Consensus 22 elDL~~~~~~l~~---aeYnP~qFpG---lv~R--l~e-Pk~a~LIF~SGK~-VcTGaKs~ed~~~av~~~~~~L~~~g~ 91 (185)
T COG2101 22 ELDLEEVALDLPG---AEYNPEQFPG---LVYR--LEE-PKTAALIFRSGKV-VCTGAKSVEDVHRAVKKLAKKLKDGGI 91 (185)
T ss_pred hccHHHHHhhCCC---CccCHhHCCe---eEEE--ecC-CcceEEEEecCcE-EEeccCcHHHHHHHHHHHHHHHHhcCc
Confidence 4565544433332 3577777777 4444 443 5788999999997 8999999999999999998887 22
Q ss_pred CC--C-cE----EEeccccCCcccChHHHHhhHH
Q 014620 167 RS--E-EV----LIESTGVIGQRIKKDALLNSLP 193 (421)
Q Consensus 167 ~~--~-~V----lvaSTGVIG~~Lpmdki~~~i~ 193 (421)
+- + +| +| +++=++++|.++.|.-++.
T Consensus 92 ~~~~~p~i~iQNIV-aSadL~~~lnL~~iA~~lg 124 (185)
T COG2101 92 DIDFEPEIKVQNIV-ASADLGVELNLNAIAIGLG 124 (185)
T ss_pred CcCCCCceEEEEEE-EEeccCccccHHHHHHhcc
Confidence 21 1 22 33 4566999999987765553
No 20
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.61 E-value=61 Score=38.39 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=37.1
Q ss_pred cchhhhhccCCCCCH------------HHHHHHHHHHHhcccCceeeCCCCCchhhhh
Q 014620 251 ATMLGVVTTDASVDS------------DVWRKMVKVAVNRSFNQITVDGDTSTNDTVI 296 (421)
Q Consensus 251 ATML~fI~TDA~i~~------------~~L~~~L~~av~~SFN~ItVDGDtSTNDtvl 296 (421)
--|+.+|=.|.+.++ ..|..+++.+=...|||||+|||-++-+.++
T Consensus 598 iPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~l 655 (1200)
T KOG0964|consen 598 IPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVL 655 (1200)
T ss_pred cchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCc
Confidence 346666666666555 3478899999999999999999999999976
No 21
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=29.56 E-value=45 Score=27.69 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 014620 148 AGYQDVVDCANTVAMLLKMRSEEVLIE 174 (421)
Q Consensus 148 ~G~~da~~~a~~~A~~Lgi~~~~Vlva 174 (421)
+=-+--+.+++.+++.+||+|++|+|.
T Consensus 44 ~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 44 QKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 334445678899999999999999985
No 22
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=28.51 E-value=18 Score=37.57 Aligned_cols=17 Identities=41% Similarity=0.909 Sum_probs=14.4
Q ss_pred cCCcCCCcccchhhhhc
Q 014620 242 GSGMIHPNMATMLGVVT 258 (421)
Q Consensus 242 GsGMI~PnMATML~fI~ 258 (421)
|+||+||||=-+++|.-
T Consensus 281 G~Gmv~P~VL~~~G~~~ 297 (335)
T COG0016 281 GCGMVHPNVLEAVGIDP 297 (335)
T ss_pred cccccCHHHHHhcCCCC
Confidence 79999999988888743
No 23
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=27.19 E-value=95 Score=23.67 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 014620 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (421)
Q Consensus 145 TG~~G~~da~~~a~~~A~~Lgi~~~~Vlva 174 (421)
|-++=-+-.+++.+++++.||+++++|.|.
T Consensus 13 t~eqk~~l~~~it~~l~~~lg~p~~~v~V~ 42 (64)
T PRK01964 13 PEEKIKNLIREVTEAISATLDVPKERVRVI 42 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 446667778899999999999999999874
No 24
>PRK03922 hypothetical protein; Provisional
Probab=27.10 E-value=81 Score=28.20 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=22.9
Q ss_pred ceEEEEEEeCCCCHHHHHHHHHHhhcc
Q 014620 342 TCLIEVRVTGANSEAEAAKIARSVASS 368 (421)
Q Consensus 342 TKli~V~V~GA~s~~~A~~iAraVa~S 368 (421)
.-.++..|-+|.|+|.|.+|||+.+.=
T Consensus 72 gL~lemkVFnAes~EHA~RIAK~eIG~ 98 (113)
T PRK03922 72 GLLLEMKVFNAESEEHASRIAKSEIGK 98 (113)
T ss_pred EEEEEEEEeecCCHHHHHHHHHHHHhh
Confidence 346788999999999999999988643
No 25
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=26.73 E-value=1.1e+02 Score=29.51 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=42.4
Q ss_pred EEecCCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEec
Q 014620 106 GAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIES 175 (421)
Q Consensus 106 gvFT~N~~~AAPV~~~r~~l~~~~~~rAvvvNSGnANA~TG~~G~~da~~~a~~~A~~Lgi~~~~VlvaS 175 (421)
-|+++|-=.-.|+++.+. ..++|+|+| .|-|..-..--.++.+++..+|+++++.|-|+.
T Consensus 125 ~V~~~~g~~~~P~v~ke~----~P~I~GVlV------VAeGa~~~~Vk~~I~~AV~~ll~v~~hkI~V~~ 184 (186)
T TIGR02830 125 VVIIRNGDQETPVVLKTE----KPEIRGVLV------VAEGAENPQIKYRIVEAVSRVLDVPAHKVSVLP 184 (186)
T ss_pred EEEECCCCCccceEEEEe----cCCceEEEE------EeeCCCCHHHHHHHHHHHHHHhCCCcceEEEEe
Confidence 355554445678764332 257999988 455555566678899999999999999988753
No 26
>PRK03903 transaldolase; Provisional
Probab=25.51 E-value=1.3e+02 Score=30.45 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhH
Q 014620 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSL 192 (421)
Q Consensus 145 TG~~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i 192 (421)
-|..|+..++++-+..-+ .|-.+.++|.+|||+-+-.+|...+.+.+
T Consensus 154 ~~~~gIa~a~~~y~~~~~-~g~~~~riL~AStg~Kn~~~~~~~yv~~L 200 (274)
T PRK03903 154 QAKSGIMNATKCYNQIEQ-HANKNIRTLFASTGVKGDDLPKDYYIKEL 200 (274)
T ss_pred cccHHHHHHHHHHHHHHH-cCCCCcEEEEEecccCCCCCChHHHHHHH
Confidence 488999999999987754 45667899999999999888877665543
No 27
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=24.82 E-value=66 Score=31.78 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=48.1
Q ss_pred hhhhhhhc--CCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCCHHHHHHHHHHhhcchh
Q 014620 293 DTVIALAS--GLSRSSRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSL 370 (421)
Q Consensus 293 DtvlllAn--G~a~~~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~V~V~GA~s~~~A~~iAraVa~S~L 370 (421)
|.|++|+. |-.| +.|....-+=.++|-+++-. +| -+.|+|.|--+.+.++.++.+=|+=--
T Consensus 133 D~VllMsVnPGfgG------------Q~Fi~~~l~Ki~~lr~~~~~--~~---~~~IeVDGGI~~~t~~~~~~AGad~~V 195 (220)
T COG0036 133 DLVLLMSVNPGFGG------------QKFIPEVLEKIRELRAMIDE--RL---DILIEVDGGINLETIKQLAAAGADVFV 195 (220)
T ss_pred CEEEEEeECCCCcc------------cccCHHHHHHHHHHHHHhcc--cC---CeEEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 77888875 3333 34665555555666666654 44 577888999999999999987665555
Q ss_pred hhhhhhCCCC
Q 014620 371 VKAAVYGRDP 380 (421)
Q Consensus 371 VKtAi~G~Dp 380 (421)
.=+|+|+.|-
T Consensus 196 aGSalF~~~d 205 (220)
T COG0036 196 AGSALFGADD 205 (220)
T ss_pred EEEEEeCCcc
Confidence 5557787754
No 28
>PHA02944 hypothetical protein; Provisional
Probab=24.61 E-value=6.4e+02 Score=24.26 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCc-------
Q 014620 148 AGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVS------- 220 (421)
Q Consensus 148 ~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVIG~~Lpmdki~~~i~~l~~~L~~~~~~~~~aA~AImTTDt~p------- 220 (421)
.+..|..++.+..+++-. +||-|-++.+|+.+++.+. .+-+-+.++|-.-
T Consensus 44 g~~~dVk~vL~R~~~Aka----------------~lPedVvKaaiesv~ehv~-------aa~~lg~~da~~g~g~d~~d 100 (180)
T PHA02944 44 GGEDDVKEVLRRIAQAKA----------------DLPEDVIKAAIESVAEHIL-------SASELGLKDAGGGLGTEFGD 100 (180)
T ss_pred ccHHHHHHHHHHHHHccC----------------CCcHHHHHHHHHHHHHHHH-------HHHHhccccccceeeeeecC
Confidence 467888888888877653 6788888888877776553 2333344443211
Q ss_pred -c--EEEEEEEE--C------CeEEEEeEEecc-CCcCCCcccchhhhhcc--CCCCCHHHHHHHHHHHHhcccCce
Q 014620 221 -K--SVAVESQV--G------GTYIRVGGMAKG-SGMIHPNMATMLGVVTT--DASVDSDVWRKMVKVAVNRSFNQI 283 (421)
Q Consensus 221 -K--~~a~~~~i--~------g~~v~i~GiAKG-sGMI~PnMATML~fI~T--DA~i~~~~L~~~L~~av~~SFN~I 283 (421)
- .+..+.+- + |=...|-.|-+| -||+.-.-=|.+=.+-+ --+|+.+.|.+.|-+++.+-+|.+
T Consensus 101 ~e~~~I~~tl~h~~d~~~d~~gW~~eIka~f~gYdGl~~~sKhtv~k~v~f~~~~~iD~~~L~~el~~~aR~AyNA~ 177 (180)
T PHA02944 101 GDKLAIMIKLQHLIDNERDERGWAGEIKAMFIGYDGLFADSKHTVIKRVEFYAGEDIDAAQLYNELIEAARHAYNAI 177 (180)
T ss_pred CCcceEEEEEEEeccCcccCCcceEEEEEEEecccccccccceeEEEEEEecCcccccHHHHHHHHHHHHHHHHhcc
Confidence 1 11111111 1 223577788888 68888777788888888 788999999999999999999987
No 29
>PF10229 DUF2246: Uncharacterized conserved protein (DUF2246); InterPro: IPR019362 This entry represents conserved proteins found in the metazoa but absent from fungi. They are all approximately 300 residues in length and have no known function.
Probab=24.45 E-value=33 Score=34.85 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=31.4
Q ss_pred EEEeEEeccCCcCCCcccc--hhhhhccCCCCCHHHHHHHHH
Q 014620 234 IRVGGMAKGSGMIHPNMAT--MLGVVTTDASVDSDVWRKMVK 273 (421)
Q Consensus 234 v~i~GiAKGsGMI~PnMAT--ML~fI~TDA~i~~~~L~~~L~ 273 (421)
+.-.|.||= |.||.-.| .-+.|+|||+.+...|+++||
T Consensus 239 i~d~gcCkV--I~Hp~wgt~vf~GsifT~AP~~~~~~~~ll~ 278 (278)
T PF10229_consen 239 IEDLGCCKV--IRHPKWGTAVFPGSIFTTAPPDSPILKKLLK 278 (278)
T ss_pred eecCCCCEE--EeecCCCccEEeEEEEeCCCCCHHHHHHhhC
Confidence 334566663 78999988 789999999999999999985
No 30
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.18 E-value=1e+02 Score=31.07 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=28.3
Q ss_pred EEEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCC-cEEEeccccCCcccC
Q 014620 134 VLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSE-EVLIESTGVIGQRIK 184 (421)
Q Consensus 134 vvvNSGnANA~TG~~G~~da~~~a~~~A~~Lgi~~~-~VlvaSTGVIG~~Lp 184 (421)
+|||-|+|.+ +|..++.+.+-+.+|+.-+ ||-+ ||.+||
T Consensus 233 FIVN~G~Ata-------~Dil~Li~~v~~~vGi~Le~Ev~i-----ig~~~~ 272 (273)
T PRK14651 233 FIVNLGGATA-------ADVHALLRRVRARVGLPLELEWEL-----WPEQLP 272 (273)
T ss_pred EEEECCCCCH-------HHHHHHHHHHHHHHCceEEEeeEE-----ecccCC
Confidence 8899998754 5777778888788777644 4554 467776
No 31
>PHA02564 V virion protein; Provisional
Probab=23.03 E-value=1.1e+02 Score=28.15 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEe
Q 014620 151 QDVVDCANTVAMLLKMRSEEVLIE 174 (421)
Q Consensus 151 ~da~~~a~~~A~~Lgi~~~~Vlva 174 (421)
-|.......|++.+|++++++|=.
T Consensus 82 NnT~aYi~~Vs~~~GV~~~~~idl 105 (141)
T PHA02564 82 NDTRAYATAVANAMGVPPQAGLHL 105 (141)
T ss_pred CCHHHHHHHHHHHHCCCCCCcCcC
Confidence 567788999999999999998743
No 32
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.94 E-value=73 Score=26.12 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.2
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 014620 346 EVRVTGANSEAEAAKIARSVAS 367 (421)
Q Consensus 346 ~V~V~GA~s~~~A~~iAraVa~ 367 (421)
.|.++||+|+++++.+.+.+..
T Consensus 59 ki~itGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 59 KIVITGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 4788999999999988887653
No 33
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=21.89 E-value=94 Score=34.70 Aligned_cols=61 Identities=20% Similarity=0.396 Sum_probs=43.9
Q ss_pred EEEEecCCCcccc--chhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccC
Q 014620 104 AAGAFTTNVVAAA--PVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVI 179 (421)
Q Consensus 104 ~AgvFT~N~~~AA--PV~~~r~~l~~~~~~rAvvvNSGnANA~TG~~G~~da~~~a~~~A~~Lgi~~~~VlvaSTGVI 179 (421)
+.| |.+|.+-++ ||+ +.++ +|+||.|++=.||-|.-.|.+ ....++|.+ |+++||.|.|=-
T Consensus 384 vvG-Fs~~~il~a~d~li---elI~-sGkIKgv~~v~GCd~~~~~~~-------yvt~~keli---prD~lVLt~GCg 446 (576)
T COG1151 384 VVG-FSHESILAAADPLI---ELIA-SGKIKGVVVVVGCDGLRSGRH-------YVTLFKELI---PRDILVLTLGCG 446 (576)
T ss_pred EEe-ecHHHHHHHHHHHH---HHHh-cCCcceEEEEeeCCCCCCCcc-------cHHHHHHhc---ccceEEEecccc
Confidence 445 566555443 332 4455 489999999999999988876 456666666 789999999853
No 34
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.54 E-value=1.2e+02 Score=26.97 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.6
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHhhcchh
Q 014620 343 CLIEVRVTGANSEAEAAKIARSVASSSL 370 (421)
Q Consensus 343 Kli~V~V~GA~s~~~A~~iAraVa~S~L 370 (421)
-.++.+|-+|.|+|-|.+|||+.+.-.|
T Consensus 73 l~l~mkVFNaes~EHA~RIAK~eIGk~L 100 (115)
T COG1885 73 LILSMKVFNAESDEHAERIAKAEIGKAL 100 (115)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHhhHh
Confidence 4578899999999999999999865444
No 35
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.01 E-value=93 Score=29.33 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=0.0
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 014620 346 EVRVTGANSEAEAAKIARSVAS 367 (421)
Q Consensus 346 ~V~V~GA~s~~~A~~iAraVa~ 367 (421)
.+.++||+|+++|+..++.++.
T Consensus 57 KiviTGaks~e~a~~a~~~i~~ 78 (174)
T cd04516 57 KMVCTGAKSEDDSKLAARKYAR 78 (174)
T ss_pred eEEEEecCCHHHHHHHHHHHHH
No 36
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.89 E-value=1.2e+02 Score=32.85 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=34.5
Q ss_pred CCeeEEEEecCCccccCcH-----HHHHHH---HHHHHHHHHHhCCCCCcEEEec--cccCCcccC
Q 014620 129 KTARAVLINAGQANAATGD-----AGYQDV---VDCANTVAMLLKMRSEEVLIES--TGVIGQRIK 184 (421)
Q Consensus 129 ~~~rAvvvNSGnANA~TG~-----~G~~da---~~~a~~~A~~Lgi~~~~VlvaS--TGVIG~~Lp 184 (421)
.-++-|.||+|+-|+||=. +|.-+. .++.+.+-..+...--+|-.-| ||-+|+.+.
T Consensus 186 plieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig 251 (547)
T KOG4355|consen 186 PLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG 251 (547)
T ss_pred CceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh
Confidence 4478899999999999953 333332 3344444444444444555555 888776543
No 37
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=20.44 E-value=49 Score=23.10 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=10.5
Q ss_pred HHhhcchhhhhhh
Q 014620 363 RSVASSSLVKAAV 375 (421)
Q Consensus 363 raVa~S~LVKtAi 375 (421)
-.|+.|||+||-+
T Consensus 7 pkiissplfktll 19 (33)
T PF07425_consen 7 PKIISSPLFKTLL 19 (33)
T ss_dssp HHHCCTTTCHHHH
T ss_pred hHHHccHHHHHHH
Confidence 3588999999865
Done!