Query 014621
Match_columns 421
No_of_seqs 457 out of 2291
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 8.1E-76 1.8E-80 611.1 24.2 396 1-397 1-400 (656)
2 COG1135 AbcC ABC-type metal io 100.0 1.9E-46 4.1E-51 362.6 9.4 257 49-349 18-313 (339)
3 COG1126 GlnQ ABC-type polar am 100.0 4.5E-38 9.9E-43 291.2 10.0 204 40-268 5-239 (240)
4 TIGR02314 ABC_MetN D-methionin 100.0 1.4E-33 3.1E-38 284.0 12.1 257 40-339 4-300 (343)
5 COG1124 DppF ABC-type dipeptid 100.0 1.4E-30 3.1E-35 245.4 10.6 183 41-236 7-230 (252)
6 COG3842 PotA ABC-type spermidi 100.0 1.6E-30 3.4E-35 260.1 10.7 188 40-235 8-224 (352)
7 COG1117 PstB ABC-type phosphat 100.0 9.6E-31 2.1E-35 241.9 7.7 201 39-266 9-249 (253)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-30 2.3E-35 245.5 6.0 191 38-236 9-234 (263)
9 COG3638 ABC-type phosphate/pho 100.0 1.9E-30 4.1E-35 243.3 7.5 187 40-234 6-234 (258)
10 COG4598 HisP ABC-type histidin 100.0 1.5E-30 3.2E-35 234.9 3.9 203 39-266 8-253 (256)
11 PRK11153 metN DL-methionine tr 100.0 2.4E-29 5.3E-34 253.6 13.2 258 40-340 4-301 (343)
12 COG1125 OpuBA ABC-type proline 100.0 1.6E-29 3.4E-34 239.1 10.3 189 40-236 4-224 (309)
13 COG3839 MalK ABC-type sugar tr 100.0 2.5E-29 5.4E-34 250.3 11.5 189 39-235 5-221 (338)
14 COG2884 FtsE Predicted ATPase 100.0 7.4E-30 1.6E-34 232.1 5.5 180 41-230 5-219 (223)
15 COG1120 FepC ABC-type cobalami 100.0 2.1E-29 4.7E-34 242.3 8.7 190 39-236 4-227 (258)
16 COG1136 SalX ABC-type antimicr 100.0 8.4E-29 1.8E-33 233.9 10.4 170 50-227 18-221 (226)
17 COG0572 Udk Uridine kinase [Nu 100.0 3.8E-28 8.2E-33 227.4 14.2 176 64-240 6-190 (218)
18 COG1118 CysA ABC-type sulfate/ 100.0 2.9E-29 6.3E-34 242.9 5.4 189 40-236 5-226 (345)
19 COG1116 TauB ABC-type nitrate/ 99.9 4.9E-28 1.1E-32 229.7 10.4 173 39-224 5-207 (248)
20 COG0444 DppD ABC-type dipeptid 99.9 1.1E-27 2.4E-32 234.4 12.1 193 48-270 16-259 (316)
21 COG1123 ATPase components of v 99.9 7.1E-28 1.5E-32 250.9 11.3 214 21-267 277-532 (539)
22 PRK11650 ugpC glycerol-3-phosp 99.9 4.6E-27 1E-31 238.1 11.9 188 40-235 6-222 (356)
23 PRK11432 fbpC ferric transport 99.9 5.8E-27 1.3E-31 236.9 11.3 188 40-235 9-224 (351)
24 COG1122 CbiO ABC-type cobalt t 99.9 1E-26 2.2E-31 222.4 12.4 185 38-235 4-226 (235)
25 TIGR03265 PhnT2 putative 2-ami 99.9 8.3E-27 1.8E-31 236.0 11.3 188 40-235 7-222 (353)
26 PRK13537 nodulation ABC transp 99.9 9.2E-27 2E-31 231.4 11.4 189 39-235 9-225 (306)
27 COG1131 CcmA ABC-type multidru 99.9 1E-26 2.2E-31 229.8 11.4 188 40-235 7-224 (293)
28 COG4555 NatA ABC-type Na+ tran 99.9 1.4E-27 3.1E-32 219.1 4.6 176 51-235 16-220 (245)
29 TIGR03258 PhnT 2-aminoethylpho 99.9 2E-26 4.3E-31 233.8 12.2 187 39-235 7-226 (362)
30 COG0410 LivF ABC-type branched 99.9 1.5E-26 3.2E-31 216.8 10.2 189 40-236 6-225 (237)
31 PRK09452 potA putrescine/sperm 99.9 2.1E-26 4.5E-31 234.7 11.3 188 40-235 17-232 (375)
32 COG0411 LivG ABC-type branched 99.9 2.5E-27 5.4E-32 223.6 3.9 188 40-235 7-237 (250)
33 PRK10851 sulfate/thiosulfate t 99.9 2.7E-26 5.8E-31 232.3 11.6 188 40-235 5-224 (353)
34 PRK13536 nodulation factor exp 99.9 3.9E-26 8.4E-31 230.0 12.5 189 39-235 43-259 (340)
35 PRK11607 potG putrescine trans 99.9 4.2E-26 9.2E-31 232.6 12.5 188 40-235 22-237 (377)
36 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.1E-26 6.8E-31 219.5 10.7 188 39-235 6-225 (254)
37 PRK15079 oligopeptide ABC tran 99.9 3.7E-26 8E-31 229.4 11.2 206 22-236 6-250 (331)
38 cd03261 ABC_Org_Solvent_Resist 99.9 4.8E-26 1E-30 217.3 11.2 188 40-235 3-224 (235)
39 COG4608 AppF ABC-type oligopep 99.9 5.8E-26 1.2E-30 218.1 10.8 184 23-236 3-198 (268)
40 PRK11000 maltose/maltodextrin 99.9 7.3E-26 1.6E-30 230.5 11.6 188 40-235 6-221 (369)
41 PRK11308 dppF dipeptide transp 99.9 1.2E-25 2.6E-30 225.4 12.8 202 24-236 5-243 (327)
42 TIGR01288 nodI ATP-binding ABC 99.9 9.9E-26 2.1E-30 223.6 11.5 188 40-235 7-222 (303)
43 cd03265 ABC_DrrA DrrA is the A 99.9 1.6E-25 3.5E-30 211.5 12.4 186 40-233 3-217 (220)
44 PRK09473 oppD oligopeptide tra 99.9 1.6E-25 3.5E-30 224.7 12.9 181 48-236 27-250 (330)
45 cd03219 ABC_Mj1267_LivG_branch 99.9 9.1E-26 2E-30 215.2 10.4 188 40-235 3-230 (236)
46 cd03259 ABC_Carb_Solutes_like 99.9 1.1E-25 2.4E-30 211.6 10.7 182 40-229 3-212 (213)
47 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.7E-26 1.5E-30 221.1 8.9 202 26-235 2-248 (269)
48 PRK11022 dppD dipeptide transp 99.9 2.1E-25 4.7E-30 223.5 12.7 179 50-236 20-242 (326)
49 cd03224 ABC_TM1139_LivF_branch 99.9 1.2E-25 2.6E-30 212.3 10.0 188 40-235 3-219 (222)
50 TIGR01186 proV glycine betaine 99.9 9.4E-26 2E-30 228.8 9.7 181 46-236 2-218 (363)
51 cd03296 ABC_CysA_sulfate_impor 99.9 2.5E-25 5.3E-30 213.0 11.9 188 40-235 5-224 (239)
52 TIGR00960 3a0501s02 Type II (G 99.9 1.3E-25 2.7E-30 211.6 9.4 177 40-226 4-216 (216)
53 PRK09536 btuD corrinoid ABC tr 99.9 2.1E-25 4.6E-30 228.9 11.5 189 40-236 6-227 (402)
54 TIGR01188 drrA daunorubicin re 99.9 1.6E-25 3.5E-30 222.0 10.1 182 46-235 2-211 (302)
55 cd03256 ABC_PhnC_transporter A 99.9 2.1E-25 4.5E-30 213.2 10.3 187 40-234 3-231 (241)
56 COG1123 ATPase components of v 99.9 1.3E-25 2.9E-30 233.9 9.5 191 24-236 5-243 (539)
57 PRK15093 antimicrobial peptide 99.9 2.8E-25 6E-30 223.1 11.4 181 48-236 18-247 (330)
58 cd03269 ABC_putative_ATPase Th 99.9 3.2E-25 7E-30 207.9 11.0 182 40-229 3-209 (210)
59 cd03268 ABC_BcrA_bacitracin_re 99.9 2.9E-25 6.3E-30 207.9 10.6 180 40-229 3-207 (208)
60 cd03218 ABC_YhbG The ABC trans 99.9 2.9E-25 6.3E-30 211.2 10.1 188 40-235 3-220 (232)
61 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.7E-25 8E-30 209.1 10.7 183 40-230 3-216 (220)
62 PRK11264 putative amino-acid A 99.9 5E-25 1.1E-29 212.0 11.8 188 40-235 6-231 (250)
63 cd03301 ABC_MalK_N The N-termi 99.9 7.3E-25 1.6E-29 205.8 12.2 182 40-229 3-212 (213)
64 TIGR03522 GldA_ABC_ATP gliding 99.9 4E-25 8.7E-30 219.1 10.9 188 40-236 5-220 (301)
65 cd03263 ABC_subfamily_A The AB 99.9 5.2E-25 1.1E-29 207.8 11.1 186 40-234 3-218 (220)
66 TIGR02315 ABC_phnC phosphonate 99.9 2.6E-25 5.6E-30 212.9 9.1 187 40-234 4-232 (243)
67 cd03226 ABC_cobalt_CbiO_domain 99.9 3.6E-25 7.8E-30 207.0 9.7 178 41-226 3-204 (205)
68 TIGR03410 urea_trans_UrtE urea 99.9 5.3E-25 1.1E-29 209.3 11.0 187 40-235 3-219 (230)
69 cd03258 ABC_MetN_methionine_tr 99.9 2.9E-25 6.2E-30 211.5 9.2 188 40-235 4-228 (233)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.9E-25 8.5E-30 208.3 9.4 178 40-226 3-218 (218)
71 cd03230 ABC_DR_subfamily_A Thi 99.9 8.2E-25 1.8E-29 199.7 11.2 155 40-226 3-173 (173)
72 PRK09493 glnQ glutamine ABC tr 99.9 5.4E-25 1.2E-29 210.6 10.3 188 40-235 4-223 (240)
73 cd03266 ABC_NatA_sodium_export 99.9 5.3E-25 1.1E-29 207.5 10.0 182 40-229 4-217 (218)
74 PRK11831 putative ABC transpor 99.9 6.9E-25 1.5E-29 213.9 10.9 188 40-235 10-231 (269)
75 PRK10070 glycine betaine trans 99.9 4.3E-25 9.4E-30 226.5 9.6 204 24-235 4-252 (400)
76 PRK13647 cbiO cobalt transport 99.9 5.8E-25 1.3E-29 215.1 9.9 185 40-234 7-224 (274)
77 PRK13637 cbiO cobalt transport 99.9 7.9E-25 1.7E-29 215.6 10.8 188 40-235 5-232 (287)
78 TIGR03415 ABC_choXWV_ATP choli 99.9 4.6E-25 1E-29 224.9 9.2 187 42-236 29-253 (382)
79 PRK14250 phosphate ABC transpo 99.9 9E-25 1.9E-29 209.6 10.7 187 40-235 6-219 (241)
80 PRK13634 cbiO cobalt transport 99.9 7E-25 1.5E-29 216.3 10.1 188 40-236 5-234 (290)
81 TIGR03411 urea_trans_UrtD urea 99.9 1E-24 2.2E-29 208.8 10.7 187 40-235 5-229 (242)
82 PRK10895 lipopolysaccharide AB 99.9 9.5E-25 2.1E-29 209.1 10.3 188 40-235 6-224 (241)
83 PRK11124 artP arginine transpo 99.9 1.1E-24 2.4E-29 208.7 10.7 188 40-235 5-228 (242)
84 PRK10619 histidine/lysine/argi 99.9 1.4E-24 3E-29 210.1 11.1 189 39-235 7-239 (257)
85 TIGR03005 ectoine_ehuA ectoine 99.9 1.8E-24 3.9E-29 208.6 11.6 188 40-235 3-234 (252)
86 PRK13651 cobalt transporter AT 99.9 9.6E-25 2.1E-29 216.9 9.8 189 40-236 5-253 (305)
87 PRK11614 livF leucine/isoleuci 99.9 8.6E-25 1.9E-29 208.9 9.1 188 40-235 8-224 (237)
88 PRK13643 cbiO cobalt transport 99.9 1.1E-24 2.5E-29 214.6 10.2 188 40-236 4-232 (288)
89 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.6E-24 3.5E-29 207.7 11.0 188 40-235 3-223 (242)
90 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-24 2.7E-29 204.1 9.9 179 40-226 3-213 (213)
91 TIGR02673 FtsE cell division A 99.9 1E-24 2.2E-29 205.0 9.3 178 40-225 4-214 (214)
92 PRK11247 ssuB aliphatic sulfon 99.9 1.9E-24 4.1E-29 209.8 11.4 184 40-231 15-217 (257)
93 TIGR00972 3a0107s01c2 phosphat 99.9 1.7E-24 3.7E-29 208.2 11.0 186 40-235 4-230 (247)
94 cd03260 ABC_PstB_phosphate_tra 99.9 1.3E-24 2.8E-29 206.2 9.9 183 40-234 3-226 (227)
95 cd03292 ABC_FtsE_transporter F 99.9 1.3E-24 2.8E-29 204.1 9.6 179 40-226 3-214 (214)
96 COG4175 ProV ABC-type proline/ 99.9 7.6E-25 1.7E-29 212.7 8.2 205 24-236 4-253 (386)
97 cd03235 ABC_Metallic_Cations A 99.9 1E-24 2.2E-29 205.0 8.7 178 41-226 3-210 (213)
98 COG1137 YhbG ABC-type (unclass 99.9 1.1E-25 2.3E-30 206.5 1.7 190 39-236 6-227 (243)
99 PRK10908 cell division protein 99.9 1.9E-24 4.1E-29 204.5 10.3 181 40-228 4-217 (222)
100 COG4152 ABC-type uncharacteriz 99.9 4.8E-25 1E-29 207.6 6.1 189 40-236 5-218 (300)
101 PRK13548 hmuV hemin importer A 99.9 2.3E-24 5E-29 209.0 11.0 188 40-235 5-228 (258)
102 PRK14268 phosphate ABC transpo 99.9 3.5E-24 7.5E-29 207.6 12.2 186 40-235 15-240 (258)
103 PRK13646 cbiO cobalt transport 99.9 1.6E-24 3.4E-29 213.3 10.0 188 40-236 5-234 (286)
104 COG4161 ArtP ABC-type arginine 99.9 1.2E-24 2.5E-29 193.8 8.1 185 40-234 5-227 (242)
105 PTZ00301 uridine kinase; Provi 99.9 4.1E-24 8.8E-29 201.5 12.2 175 66-241 3-190 (210)
106 PRK14247 phosphate ABC transpo 99.9 4.3E-24 9.4E-29 205.6 12.5 187 40-235 6-232 (250)
107 cd03229 ABC_Class3 This class 99.9 3E-24 6.6E-29 196.8 10.8 155 40-224 3-177 (178)
108 TIGR03873 F420-0_ABC_ATP propo 99.9 2.3E-24 4.9E-29 208.5 10.4 188 40-235 4-224 (256)
109 PRK11300 livG leucine/isoleuci 99.9 2.7E-24 5.8E-29 207.5 10.9 188 40-235 8-241 (255)
110 PRK11144 modC molybdate transp 99.9 2.7E-24 5.9E-29 217.7 11.2 184 42-235 5-216 (352)
111 PRK13650 cbiO cobalt transport 99.9 1.5E-24 3.2E-29 212.8 9.0 188 40-236 7-228 (279)
112 PRK10253 iron-enterobactin tra 99.9 2.7E-24 6E-29 209.2 10.6 189 39-235 9-231 (265)
113 PRK11231 fecE iron-dicitrate t 99.9 2.7E-24 5.9E-29 207.8 10.4 188 40-235 5-225 (255)
114 PRK10575 iron-hydroxamate tran 99.9 2.5E-24 5.5E-29 209.4 10.2 189 39-235 13-235 (265)
115 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.9E-24 6.3E-29 205.2 10.3 187 40-235 4-219 (236)
116 cd03225 ABC_cobalt_CbiO_domain 99.9 2E-24 4.4E-29 202.5 8.9 178 40-225 2-211 (211)
117 TIGR03740 galliderm_ABC gallid 99.9 6.4E-24 1.4E-28 201.1 12.3 184 40-232 3-208 (223)
118 PRK11248 tauB taurine transpor 99.9 7.1E-24 1.5E-28 205.4 12.8 184 40-231 4-214 (255)
119 PRK14242 phosphate transporter 99.9 6.5E-24 1.4E-28 204.7 12.5 186 40-235 9-235 (253)
120 PRK13636 cbiO cobalt transport 99.9 2.9E-24 6.4E-29 211.1 10.2 189 40-236 8-230 (283)
121 TIGR01978 sufC FeS assembly AT 99.9 5.4E-24 1.2E-28 203.7 11.7 188 40-235 3-232 (243)
122 PRK13641 cbiO cobalt transport 99.9 2.7E-24 5.8E-29 211.8 9.8 188 40-235 5-232 (287)
123 cd03257 ABC_NikE_OppD_transpor 99.9 4.8E-24 1E-28 201.9 11.2 182 40-229 4-227 (228)
124 PRK13631 cbiO cobalt transport 99.9 3.1E-24 6.7E-29 214.6 10.4 189 39-236 23-264 (320)
125 PRK13638 cbiO cobalt transport 99.9 3E-24 6.6E-29 209.5 9.9 188 40-235 4-223 (271)
126 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.9E-24 8.5E-29 200.7 10.2 180 40-229 3-210 (211)
127 PRK10261 glutathione transport 99.9 6E-24 1.3E-28 230.0 13.1 189 40-236 316-552 (623)
128 PRK09984 phosphonate/organopho 99.9 4E-24 8.7E-29 207.5 10.4 187 40-234 7-239 (262)
129 COG2274 SunT ABC-type bacterio 99.9 9.8E-25 2.1E-29 236.9 6.4 191 36-236 470-695 (709)
130 TIGR02769 nickel_nikE nickel i 99.9 8.2E-24 1.8E-28 205.8 12.2 189 40-236 5-239 (265)
131 COG4167 SapF ABC-type antimicr 99.9 8.5E-25 1.8E-29 198.2 4.8 218 25-271 5-256 (267)
132 PRK14273 phosphate ABC transpo 99.9 5.3E-24 1.2E-28 205.6 10.7 186 40-235 10-236 (254)
133 PRK13652 cbiO cobalt transport 99.9 7.4E-24 1.6E-28 207.6 11.7 189 40-236 6-226 (277)
134 TIGR02142 modC_ABC molybdenum 99.9 5.1E-24 1.1E-28 215.8 10.9 185 41-235 3-219 (354)
135 cd03246 ABCC_Protease_Secretio 99.9 4.3E-24 9.4E-29 194.9 9.3 152 40-226 3-173 (173)
136 PRK15439 autoinducer 2 ABC tra 99.9 6E-24 1.3E-28 224.9 11.8 188 40-235 14-227 (510)
137 PRK11629 lolD lipoprotein tran 99.9 8.4E-24 1.8E-28 201.7 11.6 182 40-230 8-227 (233)
138 PRK14267 phosphate ABC transpo 99.9 5.5E-24 1.2E-28 205.2 10.4 187 40-235 7-235 (253)
139 cd03233 ABC_PDR_domain1 The pl 99.9 1.2E-23 2.5E-28 196.9 12.2 171 40-229 6-201 (202)
140 TIGR02211 LolD_lipo_ex lipopro 99.9 5.6E-24 1.2E-28 200.9 10.1 179 40-227 4-220 (221)
141 cd03300 ABC_PotA_N PotA is an 99.9 6.5E-24 1.4E-28 202.4 10.6 188 40-235 3-218 (232)
142 PRK10762 D-ribose transporter 99.9 5.4E-24 1.2E-28 224.8 11.0 188 40-235 7-228 (501)
143 PRK13639 cbiO cobalt transport 99.9 5.3E-24 1.1E-28 208.4 9.9 189 40-236 4-225 (275)
144 PRK11701 phnK phosphonate C-P 99.9 1.3E-23 2.7E-28 203.6 12.4 188 40-235 9-239 (258)
145 cd03232 ABC_PDR_domain2 The pl 99.9 1.3E-23 2.8E-28 195.0 11.9 165 40-229 6-191 (192)
146 PRK14269 phosphate ABC transpo 99.9 5.2E-24 1.1E-28 204.8 9.6 187 40-235 5-228 (246)
147 COG3845 ABC-type uncharacteriz 99.9 1E-23 2.2E-28 215.2 11.9 183 39-230 6-222 (501)
148 PRK14270 phosphate ABC transpo 99.9 1.8E-23 3.8E-28 201.6 13.0 187 39-235 6-233 (251)
149 PRK10982 galactose/methyl gala 99.9 1.1E-23 2.3E-28 221.9 12.1 186 41-234 2-220 (491)
150 cd03264 ABC_drug_resistance_li 99.9 8.4E-24 1.8E-28 198.5 10.1 180 40-229 3-210 (211)
151 PRK14235 phosphate transporter 99.9 1.6E-23 3.4E-28 204.1 12.4 188 38-235 20-249 (267)
152 COG4172 ABC-type uncharacteriz 99.9 1E-23 2.2E-28 210.3 11.0 214 23-269 275-531 (534)
153 PRK10584 putative ABC transpor 99.9 1.1E-23 2.5E-28 199.8 11.0 179 41-228 10-226 (228)
154 COG4181 Predicted ABC-type tra 99.9 2.7E-24 5.8E-29 193.1 6.2 187 35-229 8-227 (228)
155 PRK09700 D-allose transporter 99.9 8.4E-24 1.8E-28 223.7 10.8 188 40-235 8-232 (510)
156 cd03213 ABCG_EPDR ABCG transpo 99.9 1.8E-23 3.8E-28 194.5 11.6 165 39-228 5-192 (194)
157 cd03297 ABC_ModC_molybdenum_tr 99.9 9.9E-24 2.2E-28 198.5 10.0 177 42-229 5-213 (214)
158 COG1129 MglA ABC-type sugar tr 99.9 5.2E-24 1.1E-28 220.6 8.8 183 40-231 11-228 (500)
159 TIGR00968 3a0106s01 sulfate AB 99.9 1.2E-23 2.5E-28 201.4 10.5 188 40-235 3-218 (237)
160 PRK14239 phosphate transporter 99.9 1.8E-23 3.8E-28 201.4 11.8 186 40-235 8-234 (252)
161 PRK13635 cbiO cobalt transport 99.9 7.6E-24 1.6E-28 207.8 9.4 188 40-236 8-228 (279)
162 TIGR01277 thiQ thiamine ABC tr 99.9 1.3E-23 2.8E-28 197.8 10.5 182 40-231 3-212 (213)
163 PRK13644 cbiO cobalt transport 99.9 6.6E-24 1.4E-28 207.7 8.9 188 40-236 4-223 (274)
164 PRK10744 pstB phosphate transp 99.9 9.9E-24 2.1E-28 204.6 10.0 186 40-235 16-242 (260)
165 cd03217 ABC_FeS_Assembly ABC-t 99.9 2E-23 4.4E-28 194.9 11.6 164 40-230 3-187 (200)
166 PRK13649 cbiO cobalt transport 99.9 1.4E-23 3E-28 205.7 11.0 187 40-235 5-232 (280)
167 cd03247 ABCC_cytochrome_bd The 99.9 1.3E-23 2.7E-28 192.6 10.0 158 40-229 3-177 (178)
168 PRK14256 phosphate ABC transpo 99.9 1.4E-23 3.1E-28 202.3 10.8 188 39-235 6-234 (252)
169 cd03215 ABC_Carb_Monos_II This 99.9 1.3E-23 2.8E-28 193.3 9.9 147 52-226 15-182 (182)
170 PRK14237 phosphate transporter 99.9 2.3E-23 5E-28 203.0 12.3 187 39-235 22-249 (267)
171 PRK14251 phosphate ABC transpo 99.9 2.5E-23 5.3E-28 200.5 12.3 187 40-235 7-233 (251)
172 COG4172 ABC-type uncharacteriz 99.9 1.2E-23 2.7E-28 209.7 10.4 189 48-266 21-259 (534)
173 PRK13549 xylose transporter AT 99.9 1.4E-23 3.1E-28 221.8 11.3 186 40-235 8-230 (506)
174 PRK14257 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 208.8 12.4 187 39-235 82-311 (329)
175 KOG0058 Peptide exporter, ABC 99.9 3.3E-24 7.2E-29 227.0 6.4 220 7-236 433-690 (716)
176 PRK14274 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 201.6 12.0 186 40-235 15-241 (259)
177 COG1132 MdlB ABC-type multidru 99.9 3.8E-24 8.3E-29 229.0 7.0 216 11-236 301-551 (567)
178 PRK14272 phosphate ABC transpo 99.9 2.4E-23 5.2E-28 200.5 11.6 187 40-235 7-234 (252)
179 PRK14275 phosphate ABC transpo 99.9 3.7E-23 8.1E-28 203.6 13.2 187 39-235 41-268 (286)
180 PRK14249 phosphate ABC transpo 99.9 2.6E-23 5.7E-28 200.4 11.8 186 40-235 7-233 (251)
181 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 8E-24 1.7E-28 231.3 8.9 190 37-236 451-672 (686)
182 PRK10261 glutathione transport 99.9 1.2E-23 2.6E-28 227.6 9.9 186 41-236 16-257 (623)
183 PRK14259 phosphate ABC transpo 99.9 1.8E-23 3.9E-28 204.0 10.2 186 40-235 16-251 (269)
184 PRK14248 phosphate ABC transpo 99.9 2.7E-23 5.8E-28 202.5 11.4 187 39-235 23-250 (268)
185 PRK14240 phosphate transporter 99.9 2.2E-23 4.8E-28 200.7 10.7 187 39-235 5-232 (250)
186 PRK14262 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 200.9 10.5 186 40-235 6-232 (250)
187 PRK13640 cbiO cobalt transport 99.9 1.3E-23 2.9E-28 206.4 9.0 188 40-236 8-231 (282)
188 PRK10771 thiQ thiamine transpo 99.9 2E-23 4.2E-28 199.0 9.8 186 40-235 4-217 (232)
189 PRK13547 hmuV hemin importer A 99.9 2.5E-23 5.4E-28 203.6 10.7 193 40-235 4-242 (272)
190 TIGR03608 L_ocin_972_ABC putat 99.9 1.5E-23 3.3E-28 195.7 8.8 172 41-221 2-206 (206)
191 PRK14253 phosphate ABC transpo 99.9 2.8E-23 6.1E-28 199.8 10.8 186 40-235 6-231 (249)
192 PRK14245 phosphate ABC transpo 99.9 2.8E-23 6E-28 200.1 10.7 187 40-236 6-233 (250)
193 PRK14265 phosphate ABC transpo 99.9 4.5E-23 9.7E-28 201.8 12.3 186 40-235 23-256 (274)
194 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.1E-23 2.4E-28 231.0 8.9 190 37-236 477-699 (710)
195 PRK14271 phosphate ABC transpo 99.9 4.9E-23 1.1E-27 201.8 12.5 187 39-235 23-249 (276)
196 PRK14261 phosphate ABC transpo 99.9 3.5E-23 7.6E-28 199.8 11.2 186 40-235 9-235 (253)
197 cd03267 ABC_NatA_like Similar 99.9 3.9E-23 8.5E-28 197.8 11.4 194 26-229 2-235 (236)
198 PRK14238 phosphate transporter 99.9 4E-23 8.7E-28 201.8 11.5 187 39-235 26-253 (271)
199 TIGR02323 CP_lyasePhnK phospho 99.9 5.1E-23 1.1E-27 198.5 11.9 188 40-235 6-236 (253)
200 cd03251 ABCC_MsbA MsbA is an e 99.9 2E-23 4.3E-28 198.8 8.9 186 40-235 3-223 (234)
201 TIGR02633 xylG D-xylose ABC tr 99.9 5.4E-23 1.2E-27 217.0 13.0 186 40-233 4-226 (500)
202 PRK14258 phosphate ABC transpo 99.9 3.3E-23 7.1E-28 201.2 10.4 188 39-235 9-243 (261)
203 PRK11288 araG L-arabinose tran 99.9 5.1E-23 1.1E-27 217.3 12.7 183 40-230 7-222 (501)
204 PRK14241 phosphate transporter 99.9 4.2E-23 9.2E-28 199.9 11.1 187 40-235 7-240 (258)
205 PRK13645 cbiO cobalt transport 99.9 2.9E-23 6.2E-28 204.5 9.9 189 39-235 8-238 (289)
206 PRK14243 phosphate transporter 99.9 5E-23 1.1E-27 200.3 11.4 186 40-235 13-246 (264)
207 PRK14244 phosphate ABC transpo 99.9 3.2E-23 7E-28 199.8 10.0 190 36-235 4-235 (251)
208 COG3840 ThiQ ABC-type thiamine 99.9 2.5E-23 5.4E-28 188.5 8.1 187 40-236 4-218 (231)
209 PRK13648 cbiO cobalt transport 99.9 2.4E-23 5.2E-28 203.0 8.6 187 40-235 10-229 (269)
210 PRK13632 cbiO cobalt transport 99.9 3.5E-23 7.6E-28 202.1 9.7 187 40-235 10-229 (271)
211 COG4559 ABC-type hemin transpo 99.9 3.1E-23 6.8E-28 191.9 8.7 194 40-236 4-229 (259)
212 PRK15112 antimicrobial peptide 99.9 3.1E-23 6.7E-28 202.1 9.1 178 50-235 26-237 (267)
213 cd03299 ABC_ModC_like Archeal 99.9 5.8E-23 1.3E-27 196.3 10.7 187 40-235 3-217 (235)
214 PRK14255 phosphate ABC transpo 99.9 7E-23 1.5E-27 197.4 11.2 186 40-235 8-234 (252)
215 PRK13642 cbiO cobalt transport 99.9 4.8E-23 1E-27 201.9 10.2 188 40-236 7-228 (277)
216 cd03216 ABC_Carb_Monos_I This 99.9 8.7E-23 1.9E-27 184.9 11.0 142 40-228 3-162 (163)
217 PRK10419 nikE nickel transport 99.9 6.4E-23 1.4E-27 200.0 10.9 189 40-236 6-240 (268)
218 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 8E-23 1.7E-27 194.2 11.2 191 26-229 2-223 (224)
219 PRK10418 nikD nickel transport 99.9 1.1E-22 2.3E-27 196.7 12.1 187 40-235 7-228 (254)
220 cd03252 ABCC_Hemolysin The ABC 99.9 3E-23 6.5E-28 198.1 7.9 186 40-235 3-223 (237)
221 PRK11174 cysteine/glutathione 99.9 4.7E-23 1E-27 221.4 10.2 189 38-236 350-571 (588)
222 PRK14236 phosphate transporter 99.9 9.1E-23 2E-27 199.3 11.3 186 40-235 28-254 (272)
223 cd03234 ABCG_White The White s 99.9 7.9E-23 1.7E-27 194.1 10.4 182 40-229 6-225 (226)
224 cd03369 ABCC_NFT1 Domain 2 of 99.9 5.9E-23 1.3E-27 192.3 9.2 179 40-230 9-205 (207)
225 TIGR02982 heterocyst_DevA ABC 99.9 9.4E-23 2E-27 192.8 10.4 178 40-226 4-219 (220)
226 PRK13633 cobalt transporter AT 99.9 4.4E-23 9.6E-28 202.4 8.4 188 40-236 7-232 (280)
227 TIGR01193 bacteriocin_ABC ABC- 99.9 2.3E-23 5E-28 228.4 7.1 189 38-236 474-696 (708)
228 cd03228 ABCC_MRP_Like The MRP 99.9 6.8E-23 1.5E-27 186.7 8.9 150 40-224 3-170 (171)
229 COG4148 ModC ABC-type molybdat 99.9 4.1E-23 9E-28 197.8 7.5 183 55-250 16-231 (352)
230 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.7E-23 5.8E-28 198.5 6.2 185 40-235 3-224 (238)
231 PRK15134 microcin C ABC transp 99.9 7E-23 1.5E-27 217.6 9.9 188 40-235 278-513 (529)
232 PRK13543 cytochrome c biogenes 99.9 1.2E-22 2.6E-27 191.6 10.4 175 40-222 14-211 (214)
233 cd03245 ABCC_bacteriocin_expor 99.9 6.4E-23 1.4E-27 193.5 8.6 179 40-228 5-218 (220)
234 cd03289 ABCC_CFTR2 The CFTR su 99.9 4.5E-23 9.8E-28 202.1 7.8 188 39-236 4-224 (275)
235 TIGR01184 ntrCD nitrate transp 99.9 6E-23 1.3E-27 195.7 8.2 175 53-235 1-202 (230)
236 PRK11176 lipid transporter ATP 99.9 3.8E-23 8.3E-28 221.7 7.6 189 38-236 342-566 (582)
237 cd03223 ABCD_peroxisomal_ALDP 99.9 1.5E-22 3.2E-27 183.9 10.0 153 40-224 3-163 (166)
238 PRK14263 phosphate ABC transpo 99.9 1.9E-22 4.2E-27 196.0 11.5 188 39-235 10-243 (261)
239 PRK14260 phosphate ABC transpo 99.9 1.5E-22 3.3E-27 196.2 10.6 187 39-235 9-241 (259)
240 cd03254 ABCC_Glucan_exporter_l 99.9 4.7E-23 1E-27 195.6 6.8 185 40-235 5-224 (229)
241 PRK14252 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 196.5 10.6 187 39-235 18-247 (265)
242 PRK14266 phosphate ABC transpo 99.9 1.9E-22 4.2E-27 194.1 10.5 186 40-235 6-232 (250)
243 cd03253 ABCC_ATM1_transporter 99.9 6.2E-23 1.3E-27 195.6 6.9 185 40-235 3-222 (236)
244 PRK10247 putative ABC transpor 99.9 1.4E-22 3E-27 192.6 9.2 171 40-222 10-211 (225)
245 TIGR03269 met_CoM_red_A2 methy 99.9 1.6E-22 3.6E-27 214.3 10.8 186 40-235 3-256 (520)
246 TIGR00958 3a01208 Conjugate Tr 99.9 9.9E-23 2.2E-27 223.6 9.0 189 38-236 479-701 (711)
247 CHL00131 ycf16 sulfate ABC tra 99.9 2.9E-22 6.2E-27 193.0 11.1 186 40-233 10-237 (252)
248 PRK10790 putative multidrug tr 99.9 1.4E-22 3E-27 218.0 9.7 189 38-236 341-562 (592)
249 PRK15064 ABC transporter ATP-b 99.9 2.6E-22 5.7E-27 213.3 11.8 184 40-235 4-240 (530)
250 PRK09544 znuC high-affinity zi 99.9 1.9E-22 4.2E-27 195.1 9.7 183 40-235 7-207 (251)
251 PRK14246 phosphate ABC transpo 99.9 3.3E-22 7.2E-27 193.9 11.1 188 39-235 12-239 (257)
252 cd03214 ABC_Iron-Siderophores_ 99.9 3.7E-22 8.1E-27 183.3 10.8 158 41-228 3-178 (180)
253 TIGR03375 type_I_sec_LssB type 99.9 1.6E-22 3.5E-27 221.4 9.8 189 38-236 464-687 (694)
254 PRK13549 xylose transporter AT 99.9 1.8E-22 3.9E-27 213.4 9.9 186 40-233 262-490 (506)
255 PRK15134 microcin C ABC transp 99.9 2E-22 4.3E-27 214.2 9.9 188 40-235 8-244 (529)
256 PRK14254 phosphate ABC transpo 99.9 3.1E-22 6.8E-27 197.0 10.5 186 40-235 42-267 (285)
257 PRK15056 manganese/iron transp 99.9 2.8E-22 6.1E-27 195.9 10.1 187 40-235 9-228 (272)
258 TIGR02770 nickel_nikD nickel i 99.9 2.2E-22 4.9E-27 191.6 9.0 176 52-235 1-213 (230)
259 PRK11160 cysteine/glutathione 99.9 2E-22 4.4E-27 216.2 9.6 189 38-236 339-561 (574)
260 KOG0055 Multidrug/pheromone ex 99.9 7.3E-23 1.6E-27 227.6 6.0 219 9-237 318-576 (1228)
261 KOG0057 Mitochondrial Fe/S clu 99.9 1.7E-22 3.6E-27 208.1 7.9 189 38-236 352-573 (591)
262 PRK03695 vitamin B12-transport 99.9 2.6E-22 5.6E-27 193.6 8.8 176 52-235 11-220 (248)
263 PRK13538 cytochrome c biogenes 99.9 4.1E-22 8.9E-27 186.4 9.8 171 40-218 4-199 (204)
264 TIGR03269 met_CoM_red_A2 methy 99.9 2E-22 4.4E-27 213.6 8.4 187 40-234 282-514 (520)
265 cd03231 ABC_CcmA_heme_exporter 99.9 3.7E-22 8E-27 186.5 9.1 174 40-221 3-198 (201)
266 PRK09580 sufC cysteine desulfu 99.9 3.7E-22 8.1E-27 191.7 9.3 185 40-232 4-230 (248)
267 PRK10938 putative molybdenum t 99.9 2.3E-22 4.9E-27 211.8 8.5 188 40-235 6-222 (490)
268 cd03250 ABCC_MRP_domain1 Domai 99.9 2E-22 4.3E-27 188.3 7.1 170 40-225 3-204 (204)
269 TIGR02324 CP_lyasePhnL phospho 99.9 6.5E-22 1.4E-26 187.3 10.0 171 41-221 5-222 (224)
270 PRK11819 putative ABC transpor 99.9 7.5E-22 1.6E-26 211.1 11.6 176 40-227 9-239 (556)
271 PF00485 PRK: Phosphoribulokin 99.9 1.6E-22 3.4E-27 188.0 5.6 170 68-239 1-187 (194)
272 cd03244 ABCC_MRP_domain2 Domai 99.9 4.7E-22 1E-26 187.8 8.8 181 40-230 5-219 (221)
273 TIGR01257 rim_protein retinal- 99.9 6.6E-22 1.4E-26 232.7 11.6 189 39-235 1939-2157(2272)
274 COG4525 TauB ABC-type taurine 99.9 7.7E-22 1.7E-26 180.7 9.4 182 39-228 5-215 (259)
275 TIGR02633 xylG D-xylose ABC tr 99.9 5.3E-22 1.1E-26 209.4 9.5 183 40-230 260-485 (500)
276 cd03288 ABCC_SUR2 The SUR doma 99.9 7.7E-22 1.7E-26 191.1 9.8 187 39-235 21-241 (257)
277 PRK13657 cyclic beta-1,2-gluca 99.9 6.5E-22 1.4E-26 212.7 10.2 189 38-236 335-557 (588)
278 PRK09700 D-allose transporter 99.9 7.7E-22 1.7E-26 208.8 10.5 182 40-231 268-492 (510)
279 cd03248 ABCC_TAP TAP, the Tran 99.9 6.8E-22 1.5E-26 187.4 9.0 177 39-226 13-226 (226)
280 TIGR01189 ccmA heme ABC export 99.9 7.5E-22 1.6E-26 183.7 8.6 160 40-207 3-180 (198)
281 PRK14264 phosphate ABC transpo 99.9 2.1E-21 4.5E-26 192.9 12.2 187 39-235 47-287 (305)
282 TIGR01842 type_I_sec_PrtD type 99.9 7E-22 1.5E-26 210.6 9.1 188 38-235 317-540 (544)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-21 3.3E-26 208.5 11.4 176 40-227 7-237 (552)
284 PRK10789 putative multidrug tr 99.9 7.8E-22 1.7E-26 211.4 9.0 188 39-236 315-537 (569)
285 cd02029 PRK_like Phosphoribulo 99.9 3.4E-21 7.4E-26 186.0 12.3 169 68-237 1-199 (277)
286 cd03290 ABCC_SUR1_N The SUR do 99.9 9.2E-22 2E-26 185.7 8.2 175 40-224 3-217 (218)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.8E-21 3.9E-26 172.9 9.5 135 40-225 3-144 (144)
288 PRK13546 teichoic acids export 99.9 1.4E-21 3.1E-26 190.4 9.6 199 23-235 3-230 (264)
289 KOG0056 Heavy metal exporter H 99.9 1.1E-22 2.3E-27 206.5 1.6 220 9-237 506-761 (790)
290 PRK13545 tagH teichoic acids e 99.9 3E-21 6.5E-26 202.1 12.5 198 24-235 4-230 (549)
291 TIGR02203 MsbA_lipidA lipid A 99.9 6.2E-22 1.3E-26 211.7 7.5 190 38-236 331-555 (571)
292 PRK13539 cytochrome c biogenes 99.9 1.5E-21 3.3E-26 183.1 9.0 158 40-207 5-180 (207)
293 TIGR01192 chvA glucan exporter 99.8 1.2E-21 2.7E-26 210.6 9.4 189 38-236 335-557 (585)
294 PRK13540 cytochrome c biogenes 99.8 1.7E-21 3.7E-26 181.7 9.0 160 40-207 4-180 (200)
295 TIGR01846 type_I_sec_HlyB type 99.8 1.2E-21 2.5E-26 214.6 9.2 189 37-236 455-679 (694)
296 PRK15064 ABC transporter ATP-b 99.8 1.7E-21 3.8E-26 207.0 10.1 183 39-233 321-521 (530)
297 COG4604 CeuD ABC-type enteroch 99.8 1.6E-21 3.5E-26 178.8 7.7 184 40-236 4-224 (252)
298 PLN03130 ABC transporter C fam 99.8 1.6E-21 3.5E-26 229.0 9.7 190 37-236 1237-1460(1622)
299 PLN03211 ABC transporter G-25; 99.8 3.3E-21 7.1E-26 209.5 11.2 188 41-236 72-295 (659)
300 PLN03232 ABC transporter C fam 99.8 1.2E-21 2.6E-26 229.4 8.4 190 37-236 1234-1457(1495)
301 TIGR02204 MsbA_rel ABC transpo 99.8 2.8E-21 6E-26 207.0 9.8 188 38-235 338-561 (576)
302 TIGR01257 rim_protein retinal- 99.8 4.4E-21 9.5E-26 225.8 11.9 188 39-235 930-1147(2272)
303 PRK10762 D-ribose transporter 99.8 4.6E-21 1E-25 202.5 9.8 176 51-234 266-481 (501)
304 COG4988 CydD ABC-type transpor 99.8 2.7E-21 5.9E-26 201.3 7.7 188 40-236 323-542 (559)
305 PRK11288 araG L-arabinose tran 99.8 4.7E-21 1E-25 202.4 9.6 174 51-232 267-480 (501)
306 COG4987 CydC ABC-type transpor 99.8 9.8E-22 2.1E-26 202.3 4.1 217 9-236 307-560 (573)
307 PTZ00265 multidrug resistance 99.8 3.3E-21 7E-26 224.7 8.9 190 37-236 1165-1451(1466)
308 KOG0055 Multidrug/pheromone ex 99.8 2.2E-21 4.8E-26 215.8 6.6 214 13-236 959-1212(1228)
309 PTZ00243 ABC transporter; Prov 99.8 3.7E-21 8.1E-26 225.6 8.2 190 37-236 1308-1532(1560)
310 PRK10535 macrolide transporter 99.8 1.4E-20 3.1E-25 204.5 12.2 188 40-236 7-231 (648)
311 COG4619 ABC-type uncharacteriz 99.8 1.5E-21 3.3E-26 174.9 3.7 174 43-226 9-212 (223)
312 cd02028 UMPK_like Uridine mono 99.8 2.3E-20 5E-25 171.8 11.5 169 68-238 1-178 (179)
313 cd03222 ABC_RNaseL_inhibitor T 99.8 1.1E-20 2.4E-25 173.7 9.2 135 41-225 4-149 (177)
314 TIGR01166 cbiO cobalt transpor 99.8 3.5E-21 7.6E-26 178.0 5.8 151 48-206 3-179 (190)
315 COG4586 ABC-type uncharacteriz 99.8 9.1E-22 2E-26 188.1 1.7 211 24-245 3-252 (325)
316 TIGR02868 CydC thiol reductant 99.8 6.3E-21 1.4E-25 202.5 8.1 156 38-202 335-515 (529)
317 PRK15439 autoinducer 2 ABC tra 99.8 1.3E-20 2.9E-25 199.5 10.5 173 52-232 278-487 (510)
318 PRK10982 galactose/methyl gala 99.8 1.3E-20 2.8E-25 198.5 10.1 178 41-228 254-471 (491)
319 TIGR02857 CydD thiol reductant 99.8 1.2E-20 2.6E-25 200.3 9.8 174 38-221 321-529 (529)
320 TIGR00957 MRP_assoc_pro multi 99.8 5.9E-21 1.3E-25 224.0 8.1 190 37-236 1284-1507(1522)
321 PRK10522 multidrug transporter 99.8 1.9E-20 4.2E-25 199.8 11.3 181 38-229 323-530 (547)
322 PLN02348 phosphoribulokinase 99.8 7.1E-20 1.5E-24 185.4 13.9 175 61-238 44-242 (395)
323 COG4674 Uncharacterized ABC-ty 99.8 2.1E-20 4.6E-25 171.2 9.0 187 40-235 8-233 (249)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.3E-20 7.3E-25 198.2 11.8 177 39-227 324-520 (552)
325 PRK11819 putative ABC transpor 99.8 3.5E-20 7.7E-25 198.2 12.0 177 39-227 326-522 (556)
326 COG4618 ArpD ABC-type protease 99.8 8.2E-21 1.8E-25 194.2 6.7 205 10-236 320-559 (580)
327 PRK15177 Vi polysaccharide exp 99.8 1.4E-20 3.1E-25 177.6 8.0 167 51-231 1-186 (213)
328 TIGR01194 cyc_pep_trnsptr cycl 99.8 2.7E-20 5.8E-25 199.1 10.9 184 38-231 338-553 (555)
329 cd02025 PanK Pantothenate kina 99.8 3E-20 6.4E-25 176.6 9.8 173 68-240 1-210 (220)
330 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.5E-20 3.1E-25 185.0 7.7 179 39-235 41-245 (282)
331 TIGR03771 anch_rpt_ABC anchore 99.8 1.6E-20 3.5E-25 178.2 7.4 169 58-235 1-199 (223)
332 PRK13541 cytochrome c biogenes 99.8 3E-20 6.5E-25 172.6 8.9 151 40-199 4-165 (195)
333 TIGR00235 udk uridine kinase. 99.8 7.5E-20 1.6E-24 171.7 11.5 177 61-241 4-189 (207)
334 TIGR01271 CFTR_protein cystic 99.8 1.8E-20 3.8E-25 219.5 8.9 190 37-236 1217-1439(1490)
335 PRK11147 ABC transporter ATPas 99.8 4.6E-20 9.9E-25 200.2 11.3 179 39-229 321-519 (635)
336 PTZ00265 multidrug resistance 99.8 2.2E-20 4.8E-25 217.8 8.4 178 38-225 383-656 (1466)
337 PRK10938 putative molybdenum t 99.8 3.4E-20 7.4E-25 195.3 8.9 183 39-229 262-484 (490)
338 PRK05480 uridine/cytidine kina 99.8 1.7E-19 3.7E-24 169.2 12.6 176 65-241 5-189 (209)
339 PRK10636 putative ABC transpor 99.8 6.2E-20 1.3E-24 199.2 10.9 185 39-235 314-515 (638)
340 cd03237 ABC_RNaseL_inhibitor_d 99.8 4.4E-20 9.5E-25 178.2 7.9 161 51-224 8-192 (246)
341 TIGR00955 3a01204 The Eye Pigm 99.8 9.3E-20 2E-24 197.2 10.8 182 47-236 35-255 (617)
342 cd03236 ABC_RNaseL_inhibitor_d 99.8 2.9E-20 6.2E-25 180.4 5.8 174 40-223 3-214 (255)
343 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1.6E-19 3.5E-24 161.9 9.9 137 41-224 3-156 (157)
344 PRK15453 phosphoribulokinase; 99.8 4.4E-19 9.5E-24 172.6 12.8 171 66-237 5-205 (290)
345 PRK13409 putative ATPase RIL; 99.8 1.5E-19 3.3E-24 194.2 10.7 167 40-223 343-529 (590)
346 TIGR01187 potA spermidine/putr 99.8 4E-20 8.7E-25 185.4 5.6 160 71-235 1-188 (325)
347 COG1134 TagH ABC-type polysacc 99.8 1.1E-19 2.4E-24 172.0 7.4 177 47-236 37-235 (249)
348 PRK10636 putative ABC transpor 99.8 3.7E-19 8E-24 193.2 12.1 174 40-228 4-226 (638)
349 TIGR00954 3a01203 Peroxysomal 99.8 1.8E-19 3.9E-24 196.3 8.2 170 39-222 453-652 (659)
350 COG0396 sufC Cysteine desulfur 99.8 2.8E-19 6E-24 167.7 8.3 185 40-232 6-229 (251)
351 TIGR00956 3a01205 Pleiotropic 99.8 5E-19 1.1E-23 206.0 12.0 186 40-233 762-989 (1394)
352 PLN03073 ABC transporter F fam 99.8 4.4E-19 9.5E-24 194.3 10.5 175 39-227 510-703 (718)
353 PLN03140 ABC transporter G fam 99.8 1.2E-18 2.7E-23 202.7 13.6 206 49-271 177-452 (1470)
354 COG5265 ATM1 ABC-type transpor 99.8 1E-19 2.2E-24 182.7 3.1 190 37-236 262-485 (497)
355 PRK11147 ABC transporter ATPas 99.8 1.6E-18 3.6E-23 188.1 12.3 175 40-228 6-233 (635)
356 TIGR00957 MRP_assoc_pro multi 99.8 9.6E-19 2.1E-23 205.5 9.4 183 38-236 637-849 (1522)
357 COG4778 PhnL ABC-type phosphon 99.8 1.9E-18 4.2E-23 155.3 9.1 179 24-222 4-226 (235)
358 cd02023 UMPK Uridine monophosp 99.8 7.1E-18 1.5E-22 156.9 12.8 174 68-242 1-183 (198)
359 TIGR00554 panK_bact pantothena 99.8 3.2E-18 7E-23 168.5 11.0 179 63-241 59-279 (290)
360 PLN03140 ABC transporter G fam 99.8 2.1E-18 4.5E-23 200.9 10.8 177 48-232 891-1105(1470)
361 COG1101 PhnK ABC-type uncharac 99.8 1.3E-18 2.9E-23 161.6 7.4 172 49-228 18-229 (263)
362 COG4107 PhnK ABC-type phosphon 99.7 2.6E-18 5.7E-23 155.0 8.5 189 42-244 11-247 (258)
363 cd02026 PRK Phosphoribulokinas 99.7 5.8E-18 1.3E-22 165.8 11.6 168 68-238 1-175 (273)
364 TIGR00956 3a01205 Pleiotropic 99.7 1.3E-18 2.9E-23 202.5 8.2 205 49-270 73-324 (1394)
365 PLN03130 ABC transporter C fam 99.7 2.3E-18 5E-23 202.6 9.4 183 38-236 615-827 (1622)
366 PRK13409 putative ATPase RIL; 99.7 1.3E-18 2.8E-23 187.1 5.4 174 40-224 76-287 (590)
367 PLN03232 ABC transporter C fam 99.7 3.1E-18 6.7E-23 200.9 8.6 184 38-236 615-827 (1495)
368 cd03238 ABC_UvrA The excision 99.7 5.7E-18 1.2E-22 155.6 8.3 147 49-226 7-166 (176)
369 PRK07429 phosphoribulokinase; 99.7 2.4E-17 5.3E-22 165.1 12.9 173 64-239 6-185 (327)
370 TIGR01271 CFTR_protein cystic 99.7 5.5E-18 1.2E-22 198.6 8.8 171 50-236 439-635 (1490)
371 PRK05439 pantothenate kinase; 99.7 3E-17 6.5E-22 162.9 12.6 180 62-241 82-299 (311)
372 COG0488 Uup ATPase components 99.7 1.8E-17 3.8E-22 175.3 11.1 173 39-229 5-231 (530)
373 PLN03073 ABC transporter F fam 99.7 1.5E-17 3.3E-22 182.2 8.9 183 38-228 178-421 (718)
374 KOG0054 Multidrug resistance-a 99.7 1.7E-17 3.6E-22 188.7 7.1 196 31-236 1130-1361(1381)
375 PTZ00243 ABC transporter; Prov 99.7 2.3E-17 5.1E-22 193.8 8.5 175 46-236 669-869 (1560)
376 COG4136 ABC-type uncharacteriz 99.7 2.9E-17 6.3E-22 145.1 5.8 145 40-194 5-171 (213)
377 KOG0059 Lipid exporter ABCA1 a 99.7 3.7E-17 8E-22 183.2 6.5 193 36-236 563-786 (885)
378 PF00005 ABC_tran: ABC transpo 99.7 1.6E-17 3.4E-22 144.8 2.7 125 53-186 1-137 (137)
379 COG4170 SapD ABC-type antimicr 99.7 7.7E-16 1.7E-20 142.8 12.3 190 39-236 9-247 (330)
380 KOG0061 Transporter, ABC super 99.7 1.6E-16 3.4E-21 171.5 9.0 180 49-236 42-259 (613)
381 COG1119 ModF ABC-type molybden 99.7 4.1E-16 8.9E-21 147.8 10.0 185 38-230 32-255 (257)
382 COG4133 CcmA ABC-type transpor 99.6 3.8E-16 8.1E-21 142.7 6.3 150 40-197 5-170 (209)
383 PRK09270 nucleoside triphospha 99.6 1.1E-15 2.4E-20 145.8 9.8 177 64-242 31-223 (229)
384 cd03270 ABC_UvrA_I The excisio 99.6 6.8E-16 1.5E-20 147.1 5.0 67 158-230 143-226 (226)
385 COG0488 Uup ATPase components 99.6 5.3E-15 1.1E-19 156.6 8.1 174 37-228 321-515 (530)
386 KOG4203 Armadillo/beta-Catenin 99.6 1.1E-15 2.5E-20 159.5 2.7 280 62-360 40-350 (473)
387 cd02024 NRK1 Nicotinamide ribo 99.5 7.4E-15 1.6E-19 136.2 6.6 152 68-223 1-177 (187)
388 PRK06696 uridine kinase; Valid 99.5 1.9E-14 4E-19 136.8 8.6 178 63-241 19-211 (223)
389 COG4615 PvdE ABC-type sideroph 99.5 2.9E-15 6.3E-20 149.7 2.7 179 39-230 324-530 (546)
390 COG4138 BtuD ABC-type cobalami 99.5 1.2E-14 2.7E-19 131.5 4.5 181 53-236 15-220 (248)
391 KOG0065 Pleiotropic drug resis 99.5 8.3E-14 1.8E-18 156.1 10.9 171 48-227 802-1011(1391)
392 COG1129 MglA ABC-type sugar tr 99.5 6E-14 1.3E-18 146.1 9.2 172 52-231 274-484 (500)
393 cd03272 ABC_SMC3_euk Eukaryoti 99.5 3.5E-14 7.7E-19 135.9 4.8 167 47-222 12-234 (243)
394 KOG0054 Multidrug resistance-a 99.5 1E-13 2.2E-18 158.2 8.7 181 40-236 521-730 (1381)
395 cd03278 ABC_SMC_barmotin Barmo 99.4 4.6E-14 9.9E-19 131.9 4.3 155 54-223 14-190 (197)
396 cd03271 ABC_UvrA_II The excisi 99.4 1.6E-13 3.5E-18 133.6 7.4 173 50-231 8-260 (261)
397 cd03274 ABC_SMC4_euk Eukaryoti 99.4 1.2E-13 2.7E-18 130.4 1.2 158 46-223 13-204 (212)
398 cd03279 ABC_sbcCD SbcCD and ot 99.3 7.8E-13 1.7E-17 124.8 4.1 161 54-225 18-210 (213)
399 COG3845 ABC-type uncharacteriz 99.3 1.7E-11 3.6E-16 126.2 14.1 184 40-233 260-488 (501)
400 cd03240 ABC_Rad50 The catalyti 99.3 4.9E-13 1.1E-17 125.6 0.6 150 57-223 17-197 (204)
401 COG1072 CoaA Panthothenate kin 99.3 2.8E-11 6.1E-16 116.9 12.2 160 61-221 77-253 (283)
402 PLN03046 D-glycerate 3-kinase; 99.3 1.6E-11 3.5E-16 125.4 10.5 163 64-226 210-429 (460)
403 COG4178 ABC-type uncharacteriz 99.3 8.5E-12 1.8E-16 132.5 7.7 157 38-207 393-567 (604)
404 PRK07667 uridine kinase; Provi 99.2 1.5E-11 3.2E-16 114.5 6.4 164 65-237 16-192 (193)
405 PLN02796 D-glycerate 3-kinase 99.2 3.4E-11 7.5E-16 120.8 8.8 120 52-171 81-231 (347)
406 KOG0927 Predicted transporter 99.2 9.2E-12 2E-16 129.0 4.8 177 38-226 390-584 (614)
407 KOG0062 ATPase component of AB 99.2 7.1E-12 1.5E-16 129.2 2.2 178 38-228 81-275 (582)
408 PRK00349 uvrA excinuclease ABC 99.2 7.8E-11 1.7E-15 132.3 10.2 72 158-235 836-925 (943)
409 KOG0927 Predicted transporter 99.2 2.1E-11 4.5E-16 126.4 5.1 177 40-232 78-304 (614)
410 cd03273 ABC_SMC2_euk Eukaryoti 99.1 5.1E-12 1.1E-16 122.1 -0.3 153 68-221 27-241 (251)
411 cd00820 PEPCK_HprK Phosphoenol 99.1 1.2E-10 2.6E-15 98.4 6.3 70 50-130 2-78 (107)
412 COG1245 Predicted ATPase, RNas 99.1 9.8E-11 2.1E-15 119.4 6.6 145 57-221 361-529 (591)
413 KOG0065 Pleiotropic drug resis 99.1 3.1E-10 6.8E-15 127.9 10.5 204 50-270 128-375 (1391)
414 cd03283 ABC_MutS-like MutS-lik 99.1 7.7E-11 1.7E-15 110.4 3.7 123 51-207 15-141 (199)
415 PRK06547 hypothetical protein; 99.1 4.2E-10 9.1E-15 103.1 8.2 152 63-237 12-170 (172)
416 KOG2355 Predicted ABC-type tra 99.1 7.6E-10 1.7E-14 102.9 9.7 181 41-235 17-235 (291)
417 PRK08233 hypothetical protein; 99.0 2.1E-09 4.5E-14 97.8 9.7 150 66-238 3-159 (182)
418 TIGR00630 uvra excinuclease AB 99.0 1.1E-09 2.3E-14 123.0 9.0 72 158-235 834-923 (924)
419 PRK00635 excinuclease ABC subu 99.0 9.1E-10 2E-14 129.3 8.0 76 158-236 815-905 (1809)
420 cd03280 ABC_MutS2 MutS2 homolo 99.0 4.6E-10 9.9E-15 104.9 4.3 56 174-229 107-171 (200)
421 KOG0060 Long-chain acyl-CoA tr 98.9 1.3E-09 2.8E-14 114.0 6.7 174 40-223 436-641 (659)
422 cd03276 ABC_SMC6_euk Eukaryoti 98.9 1.2E-09 2.7E-14 102.1 5.6 157 51-223 10-190 (198)
423 cd03275 ABC_SMC1_euk Eukaryoti 98.9 1E-09 2.3E-14 105.9 4.0 60 158-223 161-233 (247)
424 KOG0066 eIF2-interacting prote 98.9 8E-10 1.7E-14 112.2 2.9 146 40-202 589-749 (807)
425 COG2401 ABC-type ATPase fused 98.9 3.6E-09 7.9E-14 107.1 7.0 154 48-218 394-579 (593)
426 KOG0062 ATPase component of AB 98.9 2.5E-09 5.4E-14 110.6 5.9 171 41-228 366-559 (582)
427 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.6E-09 5.6E-14 111.0 3.2 62 50-116 19-88 (504)
428 cd03243 ABC_MutS_homologs The 98.8 3.3E-09 7.2E-14 99.2 3.4 63 173-235 106-177 (202)
429 cd03284 ABC_MutS1 MutS1 homolo 98.7 2.2E-08 4.8E-13 95.0 6.2 148 50-235 18-179 (216)
430 TIGR02858 spore_III_AA stage I 98.7 3.4E-08 7.4E-13 96.8 6.8 37 68-104 113-150 (270)
431 COG1245 Predicted ATPase, RNas 98.6 1.9E-08 4.2E-13 102.9 4.1 209 158-408 219-446 (591)
432 cd03277 ABC_SMC5_euk Eukaryoti 98.6 6.6E-08 1.4E-12 91.5 7.3 33 54-90 15-47 (213)
433 KOG0064 Peroxisomal long-chain 98.6 1.1E-08 2.3E-13 106.2 1.1 147 48-207 493-662 (728)
434 KOG2702 Predicted panthothenat 98.6 3.6E-08 7.8E-13 93.1 4.1 145 68-214 121-296 (323)
435 cd03282 ABC_MSH4_euk MutS4 hom 98.5 6.2E-08 1.4E-12 91.2 4.0 40 48-90 14-53 (204)
436 cd03239 ABC_SMC_head The struc 98.5 8.4E-08 1.8E-12 88.4 3.9 64 158-223 100-172 (178)
437 cd03285 ABC_MSH2_euk MutS2 hom 98.5 7.2E-08 1.6E-12 91.9 3.4 147 49-230 16-174 (222)
438 cd03241 ABC_RecN RecN ATPase i 98.4 5.7E-07 1.2E-11 88.3 7.5 64 159-224 177-248 (276)
439 PRK07721 fliI flagellum-specif 98.4 3.9E-07 8.4E-12 95.0 6.2 166 49-245 145-351 (438)
440 TIGR00318 cyaB adenylyl cyclas 98.4 1.4E-06 3E-11 80.1 8.8 105 279-384 32-138 (174)
441 cd03227 ABC_Class2 ABC-type Cl 98.3 3.5E-07 7.6E-12 82.6 3.9 130 57-223 15-155 (162)
442 KOG3308 Uncharacterized protei 98.3 7.5E-07 1.6E-11 82.7 6.0 163 65-232 3-177 (225)
443 PRK13477 bifunctional pantoate 98.3 1.2E-06 2.7E-11 92.8 8.0 185 43-238 265-484 (512)
444 KOG0066 eIF2-interacting prote 98.3 1.9E-07 4.1E-12 95.3 1.2 47 40-89 267-313 (807)
445 cd01130 VirB11-like_ATPase Typ 98.3 9.6E-07 2.1E-11 81.6 5.6 72 56-130 18-96 (186)
446 cd03242 ABC_RecF RecF is a rec 98.3 1.5E-06 3.2E-11 85.1 6.9 68 159-226 190-269 (270)
447 PRK07196 fliI flagellum-specif 98.2 2.1E-06 4.5E-11 89.3 6.9 78 49-130 142-236 (434)
448 PRK09825 idnK D-gluconate kina 98.2 1.5E-06 3.4E-11 79.8 4.9 62 62-129 2-69 (176)
449 PRK00635 excinuclease ABC subu 98.2 1.6E-06 3.5E-11 102.6 6.1 75 159-236 1706-1795(1809)
450 PRK06002 fliI flagellum-specif 98.0 9.8E-06 2.1E-10 84.5 7.4 70 42-115 144-229 (450)
451 cd02022 DPCK Dephospho-coenzym 98.0 6E-06 1.3E-10 75.8 4.7 74 160-243 104-177 (179)
452 cd03281 ABC_MSH5_euk MutS5 hom 98.0 3E-06 6.5E-11 80.2 2.7 29 68-96 31-61 (213)
453 TIGR01026 fliI_yscN ATPase Fli 98.0 9.2E-06 2E-10 84.9 6.0 178 49-248 150-359 (440)
454 PTZ00132 GTP-binding nuclear p 97.9 9.7E-06 2.1E-10 76.1 5.0 36 161-201 161-201 (215)
455 PRK06793 fliI flagellum-specif 97.9 5.3E-06 1.2E-10 86.2 2.8 154 50-227 144-301 (432)
456 COG0178 UvrA Excinuclease ATPa 97.9 6.3E-06 1.4E-10 89.8 3.3 32 49-83 613-644 (935)
457 COG4240 Predicted kinase [Gene 97.9 2.2E-05 4.7E-10 74.5 6.2 106 64-170 48-174 (300)
458 TIGR02322 phosphon_PhnN phosph 97.9 2.4E-05 5.1E-10 71.3 5.9 31 68-98 3-33 (179)
459 PF13555 AAA_29: P-loop contai 97.8 1.9E-05 4.1E-10 60.2 4.1 33 57-92 16-50 (62)
460 PRK14730 coaE dephospho-CoA ki 97.8 1.6E-05 3.4E-10 74.3 3.9 74 159-242 107-180 (195)
461 cd02020 CMPK Cytidine monophos 97.8 2.1E-05 4.6E-10 68.6 4.4 76 162-238 68-145 (147)
462 TIGR00017 cmk cytidylate kinas 97.8 2.5E-05 5.3E-10 74.3 4.9 73 162-236 123-197 (217)
463 PRK10078 ribose 1,5-bisphospho 97.8 3E-05 6.6E-10 71.5 5.4 35 68-104 4-38 (186)
464 PRK09518 bifunctional cytidyla 97.8 6.3E-05 1.4E-09 83.4 8.8 71 162-237 140-210 (712)
465 TIGR01069 mutS2 MutS2 family p 97.8 2E-05 4.4E-10 87.7 4.7 36 56-94 314-352 (771)
466 PRK14732 coaE dephospho-CoA ki 97.8 1.4E-05 3.1E-10 74.8 2.9 73 160-242 104-176 (196)
467 cd01136 ATPase_flagellum-secre 97.8 4E-05 8.8E-10 77.1 6.3 49 49-101 56-105 (326)
468 PRK08149 ATP synthase SpaL; Va 97.8 4.9E-05 1.1E-09 79.1 6.8 52 48-103 137-192 (428)
469 PRK03846 adenylylsulfate kinas 97.8 2.5E-05 5.5E-10 72.8 4.3 51 61-114 22-77 (198)
470 cd02019 NK Nucleoside/nucleoti 97.8 7.1E-05 1.5E-09 58.0 6.1 23 68-90 1-23 (69)
471 TIGR00767 rho transcription te 97.7 4.2E-05 9.1E-10 78.7 5.6 75 11-90 106-192 (415)
472 PF13207 AAA_17: AAA domain; P 97.7 2.3E-05 5.1E-10 66.4 3.1 32 68-100 1-32 (121)
473 PRK09862 putative ATP-dependen 97.7 2.3E-05 5E-10 83.2 3.7 60 41-103 188-248 (506)
474 PRK10416 signal recognition pa 97.7 4.2E-05 9.1E-10 76.9 5.3 66 61-129 112-191 (318)
475 TIGR02788 VirB11 P-type DNA tr 97.7 2.6E-05 5.6E-10 77.9 3.6 42 56-100 137-179 (308)
476 PRK07594 type III secretion sy 97.7 4.7E-05 1E-09 79.3 5.5 50 48-101 141-191 (433)
477 smart00534 MUTSac ATPase domai 97.7 1.6E-05 3.5E-10 73.4 1.9 44 174-217 77-130 (185)
478 PRK00300 gmk guanylate kinase; 97.7 3.4E-05 7.4E-10 71.8 3.8 28 61-91 3-30 (205)
479 PRK08118 topology modulation p 97.7 6.7E-05 1.5E-09 68.3 5.5 32 68-100 3-34 (167)
480 PRK11545 gntK gluconate kinase 97.6 2.9E-05 6.3E-10 70.4 2.8 55 72-129 1-61 (163)
481 PRK09099 type III secretion sy 97.6 7E-05 1.5E-09 78.2 6.0 50 48-101 149-199 (441)
482 cd03287 ABC_MSH3_euk MutS3 hom 97.6 6.7E-05 1.5E-09 71.6 5.0 46 50-98 18-65 (222)
483 PRK10751 molybdopterin-guanine 97.6 6E-05 1.3E-09 69.2 4.4 35 66-100 6-44 (173)
484 PRK01889 GTPase RsgA; Reviewed 97.6 4E-05 8.6E-10 78.2 3.4 64 53-119 185-253 (356)
485 TIGR03497 FliI_clade2 flagella 97.6 0.00011 2.4E-09 76.3 6.4 50 49-102 124-174 (413)
486 PRK14734 coaE dephospho-CoA ki 97.6 7.7E-05 1.7E-09 70.0 4.6 73 160-242 108-180 (200)
487 TIGR03498 FliI_clade3 flagella 97.6 0.00011 2.3E-09 76.4 6.0 50 49-102 127-177 (418)
488 TIGR02546 III_secr_ATP type II 97.6 8E-05 1.7E-09 77.6 5.1 49 49-101 132-181 (422)
489 COG3910 Predicted ATPase [Gene 97.6 0.00016 3.4E-09 67.0 6.3 40 165-204 134-178 (233)
490 KOG0063 RNAse L inhibitor, ABC 97.6 0.00013 2.9E-09 74.8 6.4 156 49-221 348-530 (592)
491 PRK07960 fliI flagellum-specif 97.5 9.2E-05 2E-09 77.3 4.9 50 50-103 163-216 (455)
492 TIGR03263 guanyl_kin guanylate 97.5 7.2E-05 1.6E-09 68.0 3.7 25 68-92 3-27 (180)
493 PRK00081 coaE dephospho-CoA ki 97.5 0.00014 3.1E-09 67.7 5.7 73 160-242 107-179 (194)
494 PRK03333 coaE dephospho-CoA ki 97.5 0.00015 3.3E-09 74.9 6.2 171 160-347 106-287 (395)
495 PRK05541 adenylylsulfate kinas 97.5 9.8E-05 2.1E-09 67.2 4.0 39 61-102 5-45 (176)
496 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00015 3.2E-09 71.8 5.4 59 55-117 154-223 (287)
497 TIGR03496 FliI_clade1 flagella 97.5 0.00019 4E-09 74.6 6.4 49 49-101 124-173 (411)
498 PRK06217 hypothetical protein; 97.5 0.00022 4.7E-09 65.6 6.2 34 68-102 3-36 (183)
499 KOG2878 Predicted kinase [Gene 97.5 0.00016 3.4E-09 67.5 5.1 109 61-169 25-162 (282)
500 cd00879 Sar1 Sar1 subfamily. 97.5 8E-05 1.7E-09 68.0 3.2 34 52-89 9-42 (190)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=8.1e-76 Score=611.10 Aligned_cols=396 Identities=87% Similarity=1.330 Sum_probs=379.4
Q ss_pred CCccCcCCCCCCCccccccccceeeeeecCcceecCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHH
Q 014621 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (421)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~y~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKS 80 (421)
|++++ +.++||+||.|||+||++|+.++++++|+++++++.++|+.|.+.+++.+++.-+..+++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 89999 77999999999999999999999999999999999999999999999999998887778999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCce
Q 014621 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (421)
Q Consensus 81 TL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qr 160 (421)
||+++|++++|.+|.|.+|||+...+.++++||+|.+++..++.+++..++.+..+..|.||+..+.+.+......++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999999899999999986666678899999999999999999999999999999999998877665556678899
Q ss_pred EEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeCC
Q 014621 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (421)
Q Consensus 161 VlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~ 240 (421)
|+|+||+|++++.+++.+|+++++++++|.++.+|+.||+.++|+++.+++++|...|.||+..+|+|++..||++|.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCeeeccCCCcchHHHHHHHhcccccccccccceeecCCCCCCchhhhhhhhcccCCceEEEEEeeecCCCC
Q 014621 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (421)
Q Consensus 241 ~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~p 320 (421)
|+|+.++.||+||+|+..++..++|++.|++...+.+++++|||++||..+.+++++|||+|+++|+|.|+|.+|++++|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred eEeeeeeeeceeeeEecccccccceeeeeeecccceeecCcEEEEeehhcccCcceEEEeecchhhhh----hcCCCCce
Q 014621 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVLFHLIQSFA----HLSLPTPF 396 (421)
Q Consensus 321 ~i~~~~~~f~v~~~il~g~~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 396 (421)
||++|+.+|||++++++||++|||+++++++|.+++|++|+|+|++||+|+|+++|+||||.+|+.|. .+||+++|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 57898887
Q ss_pred E
Q 014621 397 F 397 (421)
Q Consensus 397 ~ 397 (421)
-
T Consensus 400 i 400 (656)
T PLN02318 400 I 400 (656)
T ss_pred c
Confidence 3
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=362.59 Aligned_cols=257 Identities=19% Similarity=0.260 Sum_probs=209.6
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCccccccCCCCC
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRL 117 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ig~vfq~p~l 117 (421)
...||++|||+|++|+ |+||+|.||||||||+||++++. |++|.|.+||.++. |++|||+||||++
T Consensus 18 ~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 3789999999999999 99999999999999999999999 99999999998654 5789999999999
Q ss_pred CccchHHHHHHhhhcccc-----cccccccccccccccc-------ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 118 TDYDTLLENIRGLKEGKA-----VQVPIYDFKSSSRIGY-------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~~-----i~~p~~~~~~~~~~~~-------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+..+||++|++++++-.. ++.++..+........ +.....+|||.||||+ +.+|.+++|||+|
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL-----a~~P~iLL~DEaT 169 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-----ANNPKILLCDEAT 169 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH-----hcCCCEEEecCcc
Confidence 999999999999764211 1222222111111111 1112235999999999 9999999999999
Q ss_pred cCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCcccccCCeeecc
Q 014621 186 GGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p~~v~k 255 (421)
|+|||.+.+.|+ ++++++ |.|+ |++++++||||++|++|++++.+...|+ |.+|
T Consensus 170 SALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v-----------F~~P----- 233 (339)
T COG1135 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV-----------FANP----- 233 (339)
T ss_pred ccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh-----------hcCc-----
Confidence 999999988765 888876 9999 9999999999999999999999999998 7888
Q ss_pred CCCcchHHHHHHHhcccccccccccceeecCCCCCCchhhhhhhhcccCCceEEEEEeeecCCCCeEeeeeeeeceeeeE
Q 014621 256 STRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRL 335 (421)
Q Consensus 256 ~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~~~i 335 (421)
+++++++++....+.. .|+..... ++ ...+.+++|.|.|+.++.|++++..++|+|++||
T Consensus 234 -k~~~t~~fi~~~~~~~-------------~~~~~~~~-----l~-~~~~~~~rl~f~g~~~~~plis~~~~~~~v~~nI 293 (339)
T COG1135 234 -KHAITQEFIGETLEID-------------LPEELLER-----LE-SGDGPLLRLTFTGESADQPLLSEVARRFGVDVNI 293 (339)
T ss_pred -chHHHHHHHHhhcccc-------------CcHHHHhh-----hc-cCCceEEEEEecCccccchHHHHHHHHhCCceEE
Confidence 9999999998776542 22222111 11 2345889999999999999999999999999999
Q ss_pred eccc------ccccceeeee
Q 014621 336 LGGL------MALGYTIATI 349 (421)
Q Consensus 336 l~g~------~~~g~~~~~~ 349 (421)
|+|. .++|+++++.
T Consensus 294 l~G~I~~~~~~~~G~L~v~l 313 (339)
T COG1135 294 LSGNIDEIQGQPFGSLVVEL 313 (339)
T ss_pred EecchhhhCCCcceEEEEEe
Confidence 9998 6777777654
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-38 Score=291.21 Aligned_cols=204 Identities=21% Similarity=0.240 Sum_probs=166.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.++++.+||...+|++||+++++|| ++.|+||||||||||+|||+++. |++|.|.+||.... |+++||
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5678889999999999999999999 99999999999999999999999 99999999997543 567999
Q ss_pred ccCCCCCCccchHHHHHHhhhc---cc-ccccccccccccccccc--ccc-------cccCceEEEeehhhhhhhccCCc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKE---GK-AVQVPIYDFKSSSRIGY--RTL-------EVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~---~~-~i~~p~~~~~~~~~~~~--~~~-------~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
+||++++|+.+|+.+|+..... +. ..+..........++|. +.. ....|||+||||+ +.+|.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-----aM~P~ 156 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-----AMDPK 156 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-----cCCCC
Confidence 9999999999999999986421 11 01111111112222221 111 1224999999999 99999
Q ss_pred cceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCccccc
Q 014621 178 IDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQ 248 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~ 248 (421)
+.+.|||||+|||+....++ ++++++|.|+ |.++++.+|||+.|++|.+.+.++..++ |.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~-----------f~ 225 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF-----------FD 225 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH-----------hc
Confidence 99999999999999887654 8999999998 9999999999999999999888876666 78
Q ss_pred CCeeeccCCCcchHHHHHHH
Q 014621 249 NPTYILKSTRPVTVDEIKAV 268 (421)
Q Consensus 249 ~p~~v~k~~~~~~~~~i~~~ 268 (421)
+| +++.+++|+..+
T Consensus 226 ~p------~~~R~~~FL~~i 239 (240)
T COG1126 226 NP------KSERTRQFLSKI 239 (240)
T ss_pred CC------CCHHHHHHHHhh
Confidence 88 888888888654
No 4
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.4e-33 Score=284.02 Aligned_cols=257 Identities=17% Similarity=0.215 Sum_probs=191.3
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+ ...+|++|||++++|+ ++||+|+||||||||+|+|+|++ |++|.|.+||.++.
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 356666663 3579999999999999 99999999999999999999999 99999999998753
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d 172 (421)
++.++|+||++.+++..|+.+|+.+......... ........+..+. +......|||.||+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL----- 155 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL----- 155 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 3469999999999999999999987542110000 0000001111111 1111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCC
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
..+|.++++||||++||+.+...+ +++++++ |.|+ ++++.++||++++|++|++.+.+...++
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v------- 228 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI------- 228 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-------
Confidence 999999999999999999987655 4777665 8888 8999999999999999999998888877
Q ss_pred CcccccCCeeeccCCCcchHHHHHHHhcccccccccccceeecCCCCCCchhhhhhhhc-c--cCCceEEEEEeeecCCC
Q 014621 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM-R--NRDGKYNLMFEEWVTDS 319 (421)
Q Consensus 243 p~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~l~~-~--~~~~~~~l~~~~~~~~~ 319 (421)
+.+| +...+.+++....... .|+..... ++. . ..+..+++.|.|..+..
T Consensus 229 ----~~~p------~~~~~~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~ 280 (343)
T TIGR02314 229 ----FSHP------KTPLAQKFIRSTLHLS-------------IPEDYQER-----LQATPFADSVPMVRLEFTGQTVDA 280 (343)
T ss_pred ----HcCC------CcHHHHHHHhhccccc-------------CChhHHhh-----cccccCCCcceEEEEEEcCCCCCc
Confidence 3445 5566666665433210 12211110 111 0 11357899999999999
Q ss_pred CeEeeeeeeeceeeeEeccc
Q 014621 320 PFIISPRITFEVSVRLLGGL 339 (421)
Q Consensus 320 p~i~~~~~~f~v~~~il~g~ 339 (421)
|+++...++|+|+++||+|.
T Consensus 281 ~~~~~~~~~~~~~~~il~~~ 300 (343)
T TIGR02314 281 PLLSQTARRFNVDNSILSSQ 300 (343)
T ss_pred hHHHHHHHHhCCcEEEEEee
Confidence 99999999999999999988
No 5
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=245.37 Aligned_cols=183 Identities=17% Similarity=0.220 Sum_probs=146.4
Q ss_pred eeeEEEeCcE----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCc
Q 014621 41 DTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRI 107 (421)
Q Consensus 41 ~~ls~~~g~~----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ 107 (421)
+++++.|+.. .++++|||++.+|| ++||+|+||||||||+++|+|+. |++|.|.+||.... .+.
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 3444555444 49999999999999 99999999999999999999999 99999999997543 356
Q ss_pred cccccCCCC--CCccchHHHHHHhhhcccc--------------ccc--cccccccccccccccccccCceEEEeehhhh
Q 014621 108 IDGNFDDPR--LTDYDTLLENIRGLKEGKA--------------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~--l~~~~tv~enl~~l~~~~~--------------i~~--p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
+.|+||||. +.+..|+.+.|..+..... +.. ...+..+++.+|++ .|||+||||+
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ-----~QRiaIARAL-- 156 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQ-----RQRIAIARAL-- 156 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhH-----HHHHHHHHHh--
Confidence 899999995 6888999999887643211 001 11222333344433 4999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++|.++++||||++||+.....|+ .+++++ |.|. ..++..+|||+++|++|.+++..+.+|+.
T Consensus 157 ---~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 157 ---IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred ---ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 9999999999999999998766554 666554 7777 89999999999999999999999999995
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=260.11 Aligned_cols=188 Identities=21% Similarity=0.196 Sum_probs=150.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.++++..||...+++|+||+|++|| ++++.||||||||||+|+|+|+. |++|.|.+||.++. +|.+||+||
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 5678889999999999999999999 99999999999999999999999 99999999999765 578999999
Q ss_pred CCCCCccchHHHHHHhhhc-ccccc-----ccccccccc-------cccccccccccCceEEEeehhhhhhhccCCccce
Q 014621 114 DPRLTDYDTLLENIRGLKE-GKAVQ-----VPIYDFKSS-------SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~-~~~i~-----~p~~~~~~~-------~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
++.+|+++||.+|+++.+. ..... ..+.+.... .+...+......|||++||++ ..+|.++|
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL-----~~~P~vLL 159 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL-----VPEPKVLL 159 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh-----hcCcchhh
Confidence 9999999999999999765 21111 111111100 011111112234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHHH---HHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 181 RVSVTGGVHFDLVKRVFR---DIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIlr---dl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|||-++||..+..++.+ ++.++ |.|. .+.+-.++||+.+|++|+|+-.+...++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999998766654 44444 8776 6667889999999999999887777666
No 7
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.6e-31 Score=241.89 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=160.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.||.+.||++||+.|+++. +++++||||||||||+|+++.+. | ..|.|.++|.++.
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred EecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 45689999999999999999999999 99999999999999999999985 4 2699999999764
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccccc---------c-----cccccc--ccccccccccccCceEEEeehh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---------P-----IYDFKS--SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---------p-----~~~~~~--~~~~~~~~~~~~~qrVlIaegl 167 (421)
|+.+||+||.|+-|+ +++++|+++..+-..... . .++... ...++........||+.|||++
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 567999999999999 999999998643211110 0 000000 0011111112235999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
+..|.++|+|||||+|||.... .++.+++ +.+|+ |+-+.+++|+.+.++.|++++.+++..+
T Consensus 165 -----Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i--- 235 (253)
T COG1117 165 -----AVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI--- 235 (253)
T ss_pred -----hcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh---
Confidence 9999999999999999998655 4556666 46777 9999999999999999999999998888
Q ss_pred CCCCCcccccCCeeeccCCCcchHHHHH
Q 014621 239 NKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (421)
Q Consensus 239 ~~~~p~~~~~~p~~v~k~~~~~~~~~i~ 266 (421)
|.+| +++.|.+.|.
T Consensus 236 --------F~~P------~~~~TedYis 249 (253)
T COG1117 236 --------FTNP------KHKRTEDYIS 249 (253)
T ss_pred --------hcCc------cHHHHHHHhc
Confidence 7888 8888888774
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.1e-30 Score=245.53 Aligned_cols=191 Identities=14% Similarity=0.181 Sum_probs=154.6
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CC
Q 014621 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~ 106 (421)
.-.++++++||++.++++|+|++++|+ ++||+||||||||||+|+|.|++ |++|+|.++|.+.. ++
T Consensus 9 I~vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred EEEeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 345788899999999999999999999 99999999999999999999999 99999999999764 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc-cccccc-ccc--cccccccc--c--------cccccCceEEEeehhhhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI-YDF--KSSSRIGY--R--------TLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~-~i~~p~-~~~--~~~~~~~~--~--------~~~~~~qrVlIaegl~~L~d 172 (421)
++|++||+-.+|+.+||+||++++...+ ...... .+. ...+.+|. . .......|+.+|||+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi----- 160 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI----- 160 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH-----
Confidence 6899999999999999999999865322 111110 000 00111111 1 011123799999999
Q ss_pred ccCCccceEEEEecCccHHHH---HHHHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLV---KRVFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~---rrIlrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+++|.+.++||||++|||... ..+++++++. |.|. ++.+..+||+++++++|+|.-.++.+++.
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999864 5677999887 8877 78889999999999999999999999884
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-30 Score=243.26 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=149.2
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.++++..| +++.+|++|||+|++|| +++|+|+||||||||+|+|+|+. |+.|+|.++|.+.. ++.
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 45667777 88999999999999999 99999999999999999999998 99999999998653 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc-----------cccccccccccccc---------ccccccCceEEEeehh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-----------VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~-----------~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl 167 (421)
+||+||+|++.+..++.+|+...+.+..-. .....+...++++. .......|||.|||++
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 999999999999999999998765432110 00011112222221 1111235999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
...|.+.|.|||+++|||.+.+.++ ++++++ |.|+ .+.+.+||+|++-|.+|+|.-+++.++
T Consensus 163 -----~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 163 -----VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred -----hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999999999999999999988766 777665 8988 899999999999999999976665444
No 10
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.5e-30 Score=234.95 Aligned_cols=203 Identities=20% Similarity=0.248 Sum_probs=159.0
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------------- 104 (421)
..+++...||...+|++|||...+|+ +|.|+|.|||||||++|||+-+. |+.|.|.++|..+.
T Consensus 8 ~v~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 8 EVEDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ehhHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 34566777889999999999999999 99999999999999999999998 99999999998642
Q ss_pred -------CCccccccCCCCCCccchHHHHHHhhhc---cc-ccccccccccccccccc--c-------cccccCceEEEe
Q 014621 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE---GK-AVQVPIYDFKSSSRIGY--R-------TLEVPSSRIVII 164 (421)
Q Consensus 105 -------~~~ig~vfq~p~l~~~~tv~enl~~l~~---~~-~i~~p~~~~~~~~~~~~--~-------~~~~~~qrVlIa 164 (421)
|...+|+||++++|..+|+.+|+....- +. ..+..........++|. + ......||+.|+
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 2347999999999999999999865210 00 00000000001111111 1 111234999999
Q ss_pred ehhhhhhhccCCccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 165 egl~~L~d~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|++ +..|.+.+.||||++|||++.- +++++++++|+|+ |.++.+.+.+|..+++|.|++++++..+
T Consensus 165 RaL-----ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 165 RAL-----AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHH-----hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 999 9999999999999999999865 5569999999998 9999999999999999999999988887
Q ss_pred EEeCCCCCcccccCCeeeccCCCcchHHHHH
Q 014621 236 KIINKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (421)
Q Consensus 236 iI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~ 266 (421)
|.|| +.+..++|+.
T Consensus 240 -----------f~nP------~S~RlkqFls 253 (256)
T COG4598 240 -----------FGNP------QSPRLKQFLS 253 (256)
T ss_pred -----------hcCC------CCHHHHHHHH
Confidence 6777 6666666664
No 11
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=253.61 Aligned_cols=258 Identities=18% Similarity=0.222 Sum_probs=184.1
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+ .+.+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 456777776 4789999999999999 99999999999999999999999 99999999998753
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccccc---ccccccccccc---------ccccccCceEEEeehhhhhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d 172 (421)
++.++|+||++.+++..|+.+|+.+........... .-.......+. +......||+.|++++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL----- 155 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL----- 155 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 346899999999999899999998753211100000 00000011110 1111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCC
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
..+|.++++||||++||+.....+ +++++++ |.|+ ++.+.++||++++|++|++...+...++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~------ 229 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF------ 229 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH------
Confidence 999999999999999999876655 4666554 8887 78889999999999999998888776663
Q ss_pred CcccccCCeeeccCCCcchHHHHHHHhcccccccccccceeecCCCCCCchhhhhhhhc---ccCCceEEEEEeeecCCC
Q 014621 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRM---RNRDGKYNLMFEEWVTDS 319 (421)
Q Consensus 243 p~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~ 319 (421)
.+| ....+.+++.+..... .|... .. .++. ...+..+++.|.+..+..
T Consensus 230 -----~~~------~~~~~~~~~~~~~~~~-------------~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (343)
T PRK11153 230 -----SHP------KHPLTREFIQSTLHLD-------------LPEDY-LA----RLQAEPTTGSGPLLRLEFTGESVDA 280 (343)
T ss_pred -----hCC------CcHHHHHHHhcccccc-------------CchhH-hh----hcccccccCCCcEEEEEEeCCcccc
Confidence 223 2233333332211100 01000 00 0111 112457899999988999
Q ss_pred CeEeeeeeeeceeeeEecccc
Q 014621 320 PFIISPRITFEVSVRLLGGLM 340 (421)
Q Consensus 320 p~i~~~~~~f~v~~~il~g~~ 340 (421)
|+++...++|+|+++|+.|.+
T Consensus 281 ~~~~~~~~~~~~~~~i~~~~~ 301 (343)
T PRK11153 281 PLLSETARRFGVDFNILSGQI 301 (343)
T ss_pred HHHHHHHHHhCCcEEEEecce
Confidence 999999999999999998873
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.6e-29 Score=239.14 Aligned_cols=189 Identities=17% Similarity=0.148 Sum_probs=151.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+++.|++++||+|++|+ ++.++|||||||||++|+|++++ |++|.|.+||.+.. |+.|||+
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 4678888889999999999999999 99999999999999999999999 99999999999765 5789999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-----ccccccccccc---------ccccccccccccCceEEEeehhhhhhhccCCc
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGK-----AVQVPIYDFKS---------SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~-----~i~~p~~~~~~---------~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
-|.-.+|+.+|+.+||+....-. .++.+...... ..+...+......|||.++||+ +.+|.
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL-----AadP~ 155 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL-----AADPP 155 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH-----hcCCC
Confidence 99999999999999998743211 11111111000 0111111222345999999999 99999
Q ss_pred cceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 178 IDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++++|||.+++||.+..++. ++++++ |+|+ ++.+-+++|++.+|.+|++.-...++++.
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999877766 445555 9998 88899999999999999998888777774
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=250.27 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=150.8
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCcccccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vf 112 (421)
-.++++..||...+++++||++++|| ++.|+||||||||||+|+|+|++ |++|.|.+||.+.+ .|.++|+|
T Consensus 5 ~l~~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 5 ELKNVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEeeeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 46788888987779999999999999 99999999999999999999999 99999999999765 47899999
Q ss_pred CCCCCCccchHHHHHHhhhccccc-----cccccccc-------cccccccccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAV-----QVPIYDFK-------SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~~~-------~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+|+.+||++|+++.+..... +.++.+.. ..++...+......|||.++||+ .-+|.+.|
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl-----Vr~P~v~L 156 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL-----VRKPKVFL 156 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH-----hcCCCEEE
Confidence 999999999999999997653221 11111000 01111112222345999999999 99999999
Q ss_pred EEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 181 RVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|||.+.||.++...+ +++++++ |.|+ ...+..++|++.+|++|.|...+...++
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 9999999999875544 4556655 7776 5667789999999999999888877777
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=7.4e-30 Score=232.15 Aligned_cols=180 Identities=23% Similarity=0.278 Sum_probs=146.4
Q ss_pred eeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCcc
Q 014621 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (421)
Q Consensus 41 ~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~i 108 (421)
++++..|+ +..||+||||++++|| ++-|+||||||||||+|+|.+.+ |+.|.|.++|+++. |++|
T Consensus 5 ~~V~k~Y~~g~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 5 ENVSKAYPGGREALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred hhhhhhcCCCchhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 45666663 4679999999999999 99999999999999999999999 99999999999865 5789
Q ss_pred ccccCCCCCCccchHHHHHHhhhc--cc---ccccccccccccccccc---------ccccccCceEEEeehhhhhhhcc
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKE--GK---AVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~--~~---~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l 174 (421)
|++||++.+++..|+++|++++.. +. .+...+.. ..+.++. +....+.|||.||||+ ..
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~--~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi-----V~ 154 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE--VLDLVGLKHKARALPSQLSGGEQQRVAIARAI-----VN 154 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHH--HHHHhccchhhhcCccccCchHHHHHHHHHHH-----cc
Confidence 999999999999999999998753 11 11111111 1111111 1122345999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
+|.+++.||||..|||.+.++|+ .++++.|.|+ .+.+.++-.++..+.+|++....
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999988776 6788889999 88999999999999999996543
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=2.1e-29 Score=242.28 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=151.4
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
-.++++++|+.+.+++++||++++|+ +++|+||||||||||+|+|+|++ |.+|.|.+||.++. .+.++|
T Consensus 4 ~~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 4 EVENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred EEEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 35789999999999999999999999 99999999999999999999999 89999999998764 357899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccccc---cccccc----ccccc---------cccccccCceEEEeehhhhhhhcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKS----SSRIG---------YRTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~----~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l 174 (421)
++|.+......||+|.+...+....-... ..|... .+..+ .+......|||.||+++ +-
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL-----aQ 155 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL-----AQ 155 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH-----hc
Confidence 99999888889999999876532111000 000000 00000 01111235999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|.++++||||+.||...+-+++ +++++ +|.|+ .+.+.+|||+++.|.+|.+...|...+++
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999766554 78874 49988 78899999999999999999888776664
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=8.4e-29 Score=233.93 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=133.2
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCccccccCCCCC
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig~vfq~p~l 117 (421)
..+|++|||++++|| +++|+||||||||||+++|.++. |++|.|.++|.+.. ++.+|++||++++
T Consensus 18 ~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 689999999999999 99999999999999999999999 99999999998654 3569999999999
Q ss_pred CccchHHHHHHhhhccccccc---ccccccccccccc----------ccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 118 TDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
++..|+.||+..+..-..... ..........++. +......|||+||||+ ..+|.+.++|||
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL-----~~~P~iilADEP 169 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL-----INNPKIILADEP 169 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH-----hcCCCeEEeeCc
Confidence 999999999986432111110 0000000111111 1111234999999999 999999999999
Q ss_pred ecCccHHHHHHHH---HHHHHc-CCCH-----HHHHHHHhceEEEccCcEEe
Q 014621 185 TGGVHFDLVKRVF---RDIQRV-GQEP-----EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~~-G~ti-----~~vi~~~~d~V~~m~~g~I~ 227 (421)
|++||..+.+.++ ++++++ |.|+ ...+..+|||++.+.+|.+.
T Consensus 170 TgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred cccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999877655 777665 8888 66678899999999999853
No 17
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=3.8e-28 Score=227.45 Aligned_cols=176 Identities=37% Similarity=0.667 Sum_probs=162.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecCCC------ccccccCCCCCCccchHHHHHHhhhcccc
Q 014621 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gllp--~~G~I~~Dg~~~~~~------~ig~vfq~p~l~~~~tv~enl~~l~~~~~ 135 (421)
+++++|||+|+|||||||+++.|...++ ..+.|+.|+|+...+ ...+.|+||.+++...+.++|..++.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999994 578999999976532 35679999999999999999999999999
Q ss_pred ccccccccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014621 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (421)
Q Consensus 136 i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~ 214 (421)
+..|.|++..+.+.. +.....+++|+|+||+++|+| .+++.+|++.+++++.|.+.+||+.||+.++|+++..++.+|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998876 667788999999999999997 899999999999999999999999999999999999999999
Q ss_pred hceEEEccCcEEeecCCcccEEEeCC
Q 014621 215 SETVYPMYKAFIEPDLQTAHIKIINK 240 (421)
Q Consensus 215 ~d~V~~m~~g~I~p~~~~aDiiI~~~ 240 (421)
-+.|.||++.+|+|+++.||++|+.+
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecC
Confidence 99999999999999999999999643
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.9e-29 Score=242.85 Aligned_cols=189 Identities=17% Similarity=0.192 Sum_probs=148.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe---ecC-----CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---NDS-----SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~---~~~-----~~~ig~ 110 (421)
.++++..++.+.++++|+++|+.|| ++++.||||||||||+|+|+|++ |+.|.|.++|. +.+ .++||+
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ehhhhhhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 3455666788899999999999999 99999999999999999999999 99999999999 433 468999
Q ss_pred ccCCCCCCccchHHHHHHhhhccccc-------ccccccccccccc-------ccccccccCceEEEeehhhhhhhccCC
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAV-------QVPIYDFKSSSRI-------GYRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i-------~~p~~~~~~~~~~-------~~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
+|||+.+|+.+||.+||++....... ...+.+....... ..+......|||++|+++ +..|
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL-----A~eP 156 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL-----AVEP 156 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh-----hcCC
Confidence 99999999999999999997532210 0011110000000 001111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 177 LIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rr---Ilrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++++|||.++||....+. -++++.++ |.|. .+.+.++||||.+|++|+|+..++..|+-
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 9999999999999986544 45677666 7665 78889999999999999999999888883
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.9e-28 Score=229.69 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=138.4
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccCCC
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDP 115 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq~p 115 (421)
..++++..|+...||+||||++.+|| +++|+||||||||||+|.|+|+. |++|.|.++|.... ...++|+||++
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 35678888888999999999999999 99999999999999999999999 99999999998763 45789999999
Q ss_pred CCCccchHHHHHHhhhccccccc-----cc------------cccccccccccccccccCceEEEeehhhhhhhccCCcc
Q 014621 116 RLTDYDTLLENIRGLKEGKAVQV-----PI------------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~-----p~------------~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
.+++|.|+.+|+.+......... .. .+..+++.+| ...|||.|||++ ..+|.+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSG-----GMrQRVaiARAL-----~~~P~l 151 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARAL-----ATRPKL 151 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccCh-----HHHHHHHHHHHH-----hcCCCE
Confidence 99999999999998654221100 00 1111122222 224999999999 999999
Q ss_pred ceEEEEecCccHHHHHHHH----HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 179 DLRVSVTGGVHFDLVKRVF----RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl----rdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+++|||.++||..+...+. +-+.+.+.|+ .+.+-..+|||++|.++
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999998765544 3334458888 56677899999999885
No 20
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=234.43 Aligned_cols=193 Identities=21% Similarity=0.333 Sum_probs=150.8
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC-----------CCcccc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-----------SRIIDG 110 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp------~~G~I~~Dg~~~~-----------~~~ig~ 110 (421)
|...|++||||++++|| ++||+|.|||||||++++|+|++| .+|+|.++|.++. .+.|+|
T Consensus 16 g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 16 GVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred ccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 35789999999999999 999999999999999999999995 2589999998542 357999
Q ss_pred ccCCC--CCCccchHHHHHHhhhcc-ccc-----------------cc--c--ccccccccccccccccccCceEEEeeh
Q 014621 111 NFDDP--RLTDYDTLLENIRGLKEG-KAV-----------------QV--P--IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 111 vfq~p--~l~~~~tv~enl~~l~~~-~~i-----------------~~--p--~~~~~~~~~~~~~~~~~~~qrVlIaeg 166 (421)
+||+| .+.+..++.+.+...... ... .. + ..+..+++.+|+. .|||+||-|
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM-----rQRV~IAma 167 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM-----RQRVMIAMA 167 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH-----HHHHHHHHH
Confidence 99998 467788887777653221 100 00 1 1222233333322 399999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+ +.+|.++++||||++||+..+.+|+ +++++ .|.++ +.++.++||+|++||.|+|++.++..++
T Consensus 168 l-----a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i- 241 (316)
T COG0444 168 L-----ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI- 241 (316)
T ss_pred H-----hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH-
Confidence 9 9999999999999999999877665 67766 48888 9999999999999999999999999888
Q ss_pred EeCCCCCcccccCCeeeccCCCcchHHHHHHHhc
Q 014621 237 IINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 270 (421)
Q Consensus 237 I~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~ 270 (421)
|.+| .++-|+..+.+.-.
T Consensus 242 ----------~~~P------~HPYT~~Ll~s~P~ 259 (316)
T COG0444 242 ----------FKNP------KHPYTRGLLNSLPR 259 (316)
T ss_pred ----------hcCC------CChHHHHHHHhCcc
Confidence 5566 66667666655443
No 21
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=7.1e-28 Score=250.86 Aligned_cols=214 Identities=22% Similarity=0.307 Sum_probs=166.6
Q ss_pred cceeeeeecCcceecCeeeeeeeE-EEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE
Q 014621 21 DQVQLVKKKDSDRYEIVPIEDTLS-FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (421)
Q Consensus 21 ~~~~l~~~~~~~~y~~~~v~~~ls-~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~ 98 (421)
.++.|++++++|.|.... .+- ...+...|+++|||++.+|| ++||+|+||||||||+|+|+|++ |++|.|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~---~~~~~~~~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~ 350 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRK---GLFVRERGEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIF 350 (539)
T ss_pred cCceeEeeeeeeeecccc---ccccccccceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 566889999999997544 111 11356899999999999999 99999999999999999999999 99999999
Q ss_pred CCeec--C-------CCccccccCCCC--CCccchHHHHHHhhhcccc----cc-------------cc--ccccccccc
Q 014621 99 DNYND--S-------SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKA----VQ-------------VP--IYDFKSSSR 148 (421)
Q Consensus 99 Dg~~~--~-------~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~~----i~-------------~p--~~~~~~~~~ 148 (421)
+|.+. . ++.+-|+||||. +.+.+|+.+.+.....-.. .+ .+ ..+..+++.
T Consensus 351 ~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~el 430 (539)
T COG1123 351 DGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHEL 430 (539)
T ss_pred eCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhc
Confidence 99762 1 356889999985 6789999999987542110 00 00 112222333
Q ss_pred cccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceE
Q 014621 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETV 218 (421)
Q Consensus 149 ~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V 218 (421)
+| ...||+.||+++ +.+|.+++||||+++||+.....+ +++++++ |.|. +++++++||||
T Consensus 431 SG-----GQrQRvaIARAL-----a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 431 SG-----GQRQRVAIARAL-----ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred Cc-----chhHHHHHHHHH-----hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceE
Confidence 33 234999999999 999999999999999999987755 4777776 8887 99999999999
Q ss_pred EEccCcEEeecCCcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHH
Q 014621 219 YPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKA 267 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~ 267 (421)
++|++|+|++.++..++ |.+| +++-|+..+.+
T Consensus 501 ~vm~~G~iVE~G~~~~v-----------~~~p------~h~Ytr~L~~a 532 (539)
T COG1123 501 AVMYDGRIVEEGPTEKV-----------FENP------QHPYTRKLLAA 532 (539)
T ss_pred EEEECCeEEEeCCHHHH-----------hcCC------CChHHHHHHHh
Confidence 99999999999966666 5566 66666555543
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.6e-27 Score=238.11 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=147.1
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCcccccc
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vf 112 (421)
.+++++.| +.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|+|
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 46777777 67789999999999999 99999999999999999999999 99999999998753 35799999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccccc---ccccccccc---------cccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIY---DFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p~~---~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+|+.+|+.+|+.+............ -....+..+ .+......|||.|++++ ..+|.+++
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL-----~~~P~llL 157 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI-----VREPAVFL 157 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 99999999999999987543111000000 000001111 01112234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|||+++||+.....+. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999998766554 555554 8887 6778899999999999999988887776
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.8e-27 Score=236.88 Aligned_cols=188 Identities=21% Similarity=0.185 Sum_probs=147.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|+||
T Consensus 9 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 9 LKNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5677888888889999999999999 99999999999999999999999 99999999998753 367999999
Q ss_pred CCCCCccchHHHHHHhhhccccc-----ccccc------cccc-ccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAV-----QVPIY------DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i-----~~p~~------~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+|+.+|+.+|+.+....... ..... .... ..+...+......|||.|++++ ..+|.++++
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL-----~~~P~lLLL 160 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL-----ILKPKVLLF 160 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 99999999999999975421110 00000 0000 0010111112234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....++. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999866554 555554 7777 6778899999999999999988877766
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1e-26 Score=222.40 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=149.8
Q ss_pred eeeeeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCc
Q 014621 38 PIEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ 107 (421)
...++++|.|++. .+++++|+.+++|+ .++|+|+||||||||++.++|++ |++|.|.+||.+.. ++.
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 3567889999664 99999999999999 99999999999999999999999 99999999998743 577
Q ss_pred cccccCCCCC-CccchHHHHHHhhhcccccccc-----c------------cccccccccccccccccCceEEEeehhhh
Q 014621 108 IDGNFDDPRL-TDYDTLLENIRGLKEGKAVQVP-----I------------YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l-~~~~tv~enl~~l~~~~~i~~p-----~------------~~~~~~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
+|++||+|.. +-..||.+.+++...+...... . .++..+..+++ ..|||+||..+
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGG-----qkqRvaIA~vL-- 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGG-----QKQRVAIAGVL-- 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCc-----ceeeHHhhHHH--
Confidence 9999999964 4567899999986543222110 0 12222223332 34999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+.+|.++++||||++||+...+.++ +++++. |.|+ ++.+..+||++++|.+|++..++..+++
T Consensus 154 ---a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 154 ---AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred ---HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999877655 777766 6788 8999999999999999999888876555
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=8.3e-27 Score=236.00 Aligned_cols=188 Identities=17% Similarity=0.183 Sum_probs=147.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|+||
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 7 IDNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5678888888889999999999999 99999999999999999999999 99999999998764 367999999
Q ss_pred CCCCCccchHHHHHHhhhccccc-----cccc------ccccc-ccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAV-----QVPI------YDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i-----~~p~------~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+|+.+|+.+|+.+....... .... ..... ..+...+......|||.|++++ ..+|.++++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL-----~~~P~llLL 158 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARAL-----ATSPGLLLL 158 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99999999999999976432110 0000 00000 0011111112234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+...+++. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999998766555 555554 8777 7778899999999999999988877666
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=9.2e-27 Score=231.42 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=147.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~v 111 (421)
-.+++++.|+...+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|++.. ++.+||+
T Consensus 9 ~i~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 9 DFRNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred EEEeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 35677788888889999999999999 99999999999999999999999 99999999999754 3569999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc-----cccc---c-ccccccccc---ccccccCceEEEeehhhhhhhccCCccc
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIY---D-FKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~---~-~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+|++.+++..|+.+|+.+........ .... + +........ .......||+.||+++ ..+|.++
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL-----~~~P~ll 160 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL-----VNDPDVL 160 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH-----hCCCCEE
Confidence 99999999999999998643211100 0000 0 000000000 1111234999999999 9999999
Q ss_pred eEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++||||++||+...+. ++++++++|.|+ ++.+.++||++++|++|++...+...++
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999987654 456776678888 7889999999999999999888876665
No 27
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1e-26 Score=229.84 Aligned_cols=188 Identities=17% Similarity=0.186 Sum_probs=149.6
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~v 111 (421)
.++++..|| .+.+|++|||++++|+ ++|++||||||||||+|+|+|++ |++|.|.++|++.. ++.+||+
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 367888888 6999999999999999 99999999999999999999999 99999999998764 3569999
Q ss_pred cCCCCCCccchHHHHHHhhhcccccc-----ccc----cccccccccc---cccccccCceEEEeehhhhhhhccCCccc
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKAVQ-----VPI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~-----~p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+|++.+++..|+.+++.+...-.... ... ..+....... ........||+.||.++ ..+|.++
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL-----~~~P~ll 158 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL-----LHDPELL 158 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99999999999999998864321110 000 0000000000 01112234999999999 9999999
Q ss_pred eEEEEecCccHHHHH---HHHHHHHHcC-CCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVK---RVFRDIQRVG-QEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~r---rIlrdl~~~G-~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++||||++||+...+ +++++++++| .|+ ++.+.++||+|.++++|++...+...++
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999998654 5668888887 677 8888999999999999999998877774
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-27 Score=219.06 Aligned_cols=176 Identities=18% Similarity=0.279 Sum_probs=140.2
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccccCCCCCCccchH
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTL 123 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vfq~p~l~~~~tv 123 (421)
.+++||||++++|+ |+||.|+|||||||++|+|+.++ |++|.|.+||++.. +++||..|..-.+++.+|+
T Consensus 16 ~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 16 QAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred hhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 48999999999999 99999999999999999999999 99999999999764 5789999988899999999
Q ss_pred HHHHHhhhc-----ccccccccc----cccc----ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014621 124 LENIRGLKE-----GKAVQVPIY----DFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 124 ~enl~~l~~-----~~~i~~p~~----~~~~----~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
++||.+... +..++.+.. .+.. ..+.+ +......|+|.||+|+ ..+|.+.++|||+++||.
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~-~~S~G~kqkV~iARAl-----vh~P~i~vlDEP~sGLDi 166 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-EFSTGMKQKVAIARAL-----VHDPSILVLDEPTSGLDI 166 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh-hhchhhHHHHHHHHHH-----hcCCCeEEEcCCCCCccH
Confidence 999987532 121111111 1111 11111 3344567999999999 999999999999999999
Q ss_pred HHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 191 DLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 191 ~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...+.+ ++.+++.|+++ |+.++.+||+|+++++|.+...+..+.+
T Consensus 167 ~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 167 RTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 876654 46666678877 8999999999999999999776654433
No 29
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=2e-26 Score=233.85 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=148.3
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe--eEEEECCeecC-----CCcccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYNDS-----SRIIDG 110 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~--G~I~~Dg~~~~-----~~~ig~ 110 (421)
-.+++++.|+...+|+++||++++|+ +++|+||||||||||+++|+|++ |++ |.|.++|.+.. ++.++|
T Consensus 7 ~~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 7 RIDHLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 35678888888889999999999999 99999999999999999999999 899 99999998753 357999
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccc-----ccccccccccccc---------cccccccCceEEEeehhhhhhhccCC
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
+||++.+|+.+|+.+|+.+........ ..... ..+..+ .+......|||.|++++ ..+|
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~--~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL-----~~~P 156 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD--ALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI-----AIEP 156 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHhcCCCchhhCChhhCCHHHHHHHHHHHHH-----hcCC
Confidence 999999999999999998754311111 00000 001111 01111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHc--CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRV--GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~--G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++|||+++||+.....+. +++.++ |.|+ ++.+..+||++++|++|++...+...++
T Consensus 157 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999766554 566555 6777 7778899999999999999988877776
No 30
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.5e-26 Score=216.83 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=152.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.++++..||...+|++|||++++|| +++++|+||||||||+++|+|+. +.+|.|.++|.+++ +..++|
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 4678899999999999999999999 99999999999999999999999 78999999999876 345899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc---ccccc----cccccc--ccc---cccccccccCceEEEeehhhhhhhccCCcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK---AVQVP----IYDFKS--SSR---IGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~---~i~~p----~~~~~~--~~~---~~~~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
++|..+.|+.+||.||+....... ..... +|+.-+ .++ .++.......|.++|+||+ ..+|.+
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL-----m~~Pkl 157 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL-----MSRPKL 157 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH-----hcCCCE
Confidence 999999999999999998642211 11111 222111 111 1112222345889999999 999999
Q ss_pred ceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 179 DLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+++|||+.++-|....+|. ++++++ |.|| ...+.+++||.++|..|+|.-+++.+++.
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 9999999999999877654 778766 7788 67788899999999999999999888773
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=2.1e-26 Score=234.69 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=147.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|+||
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 5678888888889999999999999 99999999999999999999999 89999999999763 467999999
Q ss_pred CCCCCccchHHHHHHhhhcccccc-----cccc------cccc-ccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQ-----VPIY------DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~-----~p~~------~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+|+.+|+.+|+.+........ .... .... ..+...+......|||.|++++ ..+|.++++
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL-----~~~P~llLL 168 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV-----VNKPKVLLL 168 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999999999999998754211100 0000 0000 0000001112234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....++. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999998766554 555554 8877 6778889999999999999988877666
No 32
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.5e-27 Score=223.59 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=148.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC--------Ccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~--------~~ig~ 110 (421)
.++++..||+..|+++|||++++|+ ++||+||||||||||.++|.|.+ |++|.|.++|.+++. ..+.-
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 4678888899999999999999999 99999999999999999999999 999999999998752 34667
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-----ccccccc----------ccccccccccc--------cccccC-ceEEEeeh
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK-----AVQVPIY----------DFKSSSRIGYR--------TLEVPS-SRIVIIEG 166 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-----~i~~p~~----------~~~~~~~~~~~--------~~~~~~-qrVlIaeg 166 (421)
.||++.+|+.+|+.||+....... ....+.+ .+...+..+.. ...+.. .++=||++
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 899999999999999997642211 0001110 00111111110 112222 44558999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ +.+|.++++|||.+++.+....+ ++++++++ |.|+ |+++..+||||++|+.|++..+|.++++
T Consensus 164 L-----a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 164 L-----ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred H-----hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9 99999999999999999987665 45888875 6888 9999999999999999999999999888
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=2.7e-26 Score=232.29 Aligned_cols=188 Identities=16% Similarity=0.144 Sum_probs=146.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|+||
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4677777877889999999999999 99999999999999999999999 99999999998763 357999999
Q ss_pred CCCCCccchHHHHHHhhhccc----ccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCc
Q 014621 114 DPRLTDYDTLLENIRGLKEGK----AVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~----~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
++.+++.+|+.+|+.+..... ... .........+..+. +......|||.|++++ ..+|.
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL-----~~~P~ 156 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL-----AVEPQ 156 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 999999999999998753210 000 00000000111110 1111234999999999 99999
Q ss_pred cceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 178 IDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++++|||+++||+.....+. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999766554 555555 7777 7888999999999999999988877776
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=3.9e-26 Score=230.03 Aligned_cols=189 Identities=14% Similarity=0.056 Sum_probs=148.2
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~v 111 (421)
-.+++++.|+.+.+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 43 ~i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 43 DLAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 35788888888899999999999999 99999999999999999999999 99999999998753 3568999
Q ss_pred cCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
||++.+++..|+.+|+.+......... ...........+. .......||+.||+++ ..+|.++
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL-----~~~P~lL 194 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL-----INDPQLL 194 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 999999999999999986432111000 0000000011110 1111234999999999 9999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++||||++||+...+.+ +++++++|.|+ ++.+.++||+++++++|++...+...++
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999976654 46666678888 8889999999999999999988877666
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.2e-26 Score=232.61 Aligned_cols=188 Identities=18% Similarity=0.130 Sum_probs=146.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+|+++||++++|+ +++|+||||||||||+++|+|+. |+.|.|.+||.+.. ++.++|+||
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4566666777789999999999999 99999999999999999999999 99999999998753 467999999
Q ss_pred CCCCCccchHHHHHHhhhcccccccc---ccccccccccc---------cccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+|+.+|+.+|+.+.......... ..-....+..+ .+......|||.|++++ ..+|.++++
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL-----~~~P~lLLL 173 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL-----AKRPKLLLL 173 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99999999999999875431111000 00000001111 01112234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+.....+. +++.+ .|.|+ .+.+..+||++++|++|++...+...++
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999876554 55544 48777 7778899999999999999988877776
No 36
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.1e-26 Score=219.55 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=140.9
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccC
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq 113 (421)
-.+++++.|+...||+||||++++|+ +++|+||||||||||+|+|+|++ |.+|.|.+.|.... +..|||++|
T Consensus 6 ~v~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 6 EVENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEeeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46789999986589999999999999 99999999999999999999999 99999999998643 356999999
Q ss_pred CC--CCCccchHHHHHHhhhcccccccccc---c----ccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 114 DP--RLTDYDTLLENIRGLKEGKAVQVPIY---D----FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 114 ~p--~l~~~~tv~enl~~l~~~~~i~~p~~---~----~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
.. +.--..||++.+...+..+.-....+ + ....++++. +......|||+||||+ +.+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL-----~~~ 157 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL-----AQN 157 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh-----ccC
Confidence 65 33334689999987532221000000 0 001111111 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++|||++++|+.... +++++++++|+|| .+.+.+++|+|+.+... +...++..++
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~~~G~~~~~ 225 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LIASGPPEEV 225 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eEeccChhhc
Confidence 9999999999999998755 5668888889999 78889999999888554 4445555444
No 37
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=3.7e-26 Score=229.41 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=150.8
Q ss_pred ceeeeeecCcceecCeeeeeeeEE-EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC
Q 014621 22 QVQLVKKKDSDRYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD 99 (421)
Q Consensus 22 ~~~l~~~~~~~~y~~~~v~~~ls~-~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~D 99 (421)
+++|+.+++++.|.... -..+.+ ..+...++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+|
T Consensus 6 ~~~l~v~~l~~~~~~~~-~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHFDIKD-GKQWFWQPPKTLKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEECCCC-ccccccccCCceEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 34678888888874210 000001 1124679999999999999 99999999999999999999999 899999999
Q ss_pred CeecC----------CCccccccCCC--CCCccchHHHHHHhhhccc--ccccc---cccccccccccc----------c
Q 014621 100 NYNDS----------SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK--AVQVP---IYDFKSSSRIGY----------R 152 (421)
Q Consensus 100 g~~~~----------~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~--~i~~p---~~~~~~~~~~~~----------~ 152 (421)
|.++. ++.++|+||+| .+++..++.+|+.+..... ..... .......+..+. +
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 98753 24689999998 5777899999997642110 00000 000000111111 1
Q ss_pred cccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEcc
Q 014621 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 153 ~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~ 222 (421)
......|||.||+++ ..+|.++++||||++||+.....++ ++++++ |.|+ ++.+.++||++++|+
T Consensus 162 LSgG~~QRv~iArAL-----~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 162 FSGGQCQRIGIARAL-----ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCHHHHHHHHHHHHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 111234999999999 9999999999999999998776554 666654 8888 888999999999999
Q ss_pred CcEEeecCCcccEE
Q 014621 223 KAFIEPDLQTAHIK 236 (421)
Q Consensus 223 ~g~I~p~~~~aDii 236 (421)
+|++.+.++..++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (331)
T PRK15079 237 LGHAVELGTYDEVY 250 (331)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999998877763
No 38
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.8e-26 Score=217.26 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=144.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~i 108 (421)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4678888888889999999999999 99999999999999999999999 89999999998642 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc-cccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK-AVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~-~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|++|++.+++..|+.+|+.+..... .... ...........+. +......||+.|++++ ...
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al-----~~~ 154 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL-----ALD 154 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999999999899999997642110 0000 0000000011110 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++||||+++|+.....+. +++.+ .|.|+ .+.+..+||++++|++|++...++..++
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999998766554 55555 38887 6778899999999999999887766655
No 39
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=5.8e-26 Score=218.05 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=139.8
Q ss_pred eeeeeecCcceecCeeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 014621 23 VQLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (421)
Q Consensus 23 ~~l~~~~~~~~y~~~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg 100 (421)
++|++++++|.|....- +... ...|+++|||++++|| ++||+|.||||||||.|+|.+++ |++|.|.++|
T Consensus 3 ~ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred ceEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 46888888888854322 3333 4789999999999999 99999999999999999999999 9999999999
Q ss_pred eecCCCccccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccce
Q 014621 101 YNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 101 ~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
.+..... .....+-+..+...-......+...+++.+|++ .||+.|||++ +++|.+.+
T Consensus 75 ~~i~~~~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ-----rQRi~IARAL-----al~P~liV 132 (268)
T COG4608 75 KDITKLS------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ-----RQRIGIARAL-----ALNPKLIV 132 (268)
T ss_pred cchhhcc------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh-----hhhHHHHHHH-----hhCCcEEE
Confidence 8754221 111112222221111111112333445556644 4899999999 99999999
Q ss_pred EEEEecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 181 RVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 181 ~DEpts~LD~~~~rr---Ilrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|||++++|.....+ ++++++++ |.|. ..+++.+||++++||.|+|++.++..+++
T Consensus 133 ~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 133 ADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred ecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999999976554 55888766 8887 89999999999999999999999998884
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7.3e-26 Score=230.47 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=146.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.+.+|+++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 6 i~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 5678888888889999999999999 99999999999999999999999 99999999998753 356999999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---ccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++.+|+.+|+.+........... .-....+..+. +......||+.|++++ ..+|.++++
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL-----~~~P~lLLL 157 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL-----VAEPSVFLL 157 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999999999999998753211100000 00000011110 1111234999999999 999999999
Q ss_pred EEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||+++||+....++ ++++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999976655 4666554 8777 6778899999999999999888776666
No 41
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=225.39 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=146.2
Q ss_pred eeeeecCcceecCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014621 24 QLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
+|+.+++++.|.... ......+...+|++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+
T Consensus 5 ~l~v~nl~~~~~~~~---~~~~~~~~~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~ 78 (327)
T PRK11308 5 LLQAIDLKKHYPVKR---GLFKPERLVKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78 (327)
T ss_pred eEEEeeeEEEEcCCC---CccccCCceeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 566666666663210 00001123679999999999999 99999999999999999999999 899999999987
Q ss_pred cC----------CCccccccCCC--CCCccchHHHHHHhhhccc-cccc---ccccccccccccc----------ccccc
Q 014621 103 DS----------SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK-AVQV---PIYDFKSSSRIGY----------RTLEV 156 (421)
Q Consensus 103 ~~----------~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~-~i~~---p~~~~~~~~~~~~----------~~~~~ 156 (421)
+. ++.++|+||+| .+.+.+++.+++....... .... ........+..+. +....
T Consensus 79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 53 34689999998 4677789988886432110 0000 0000000111110 11112
Q ss_pred cCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEE
Q 014621 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 157 ~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..||+.||+++ ..+|.++++||||++||+.....++ ++++++ |.|+ +..+.++||++++|++|++
T Consensus 159 q~QRv~iArAL-----~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 159 QRQRIAIARAL-----MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred HHHHHHHHHHH-----HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 34999999999 9999999999999999998776554 666554 8887 7888999999999999999
Q ss_pred eecCCcccEE
Q 014621 227 EPDLQTAHIK 236 (421)
Q Consensus 227 ~p~~~~aDii 236 (421)
.+.++..+++
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999877773
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=9.9e-26 Score=223.60 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=144.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4677788888889999999999999 99999999999999999999999 99999999998653 35689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++..|+.+|+............ ..-....+..+. .......||+.|++++ ..+|.+++
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lll 158 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL-----INDPQLLI 158 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999889999999753211000000 000000011110 1111234999999999 89999999
Q ss_pred EEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 181 RVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+||||++||+...+.+ +++++++|.|+ .+.+.++||+++.|.+|++...+...++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999976654 46666668887 7888999999999999999887776665
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-25 Score=211.54 Aligned_cols=186 Identities=19% Similarity=0.159 Sum_probs=141.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+|
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4678888888889999999999999 99999999999999999999998 89999999998653 24689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++..++.+|+.+........ ....-.......+. +......||+.|++++ ..+|.+++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al-----~~~p~lll 154 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL-----VHRPEVLF 154 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9999988899999997642110000 00000000011110 1111234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
+|||++++|+...+.+. +++.++ |.|+ .+.+..+||+++++++|++...+...
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChH
Confidence 99999999999766554 555555 7777 77888999999999999997765443
No 44
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=1.6e-25 Score=224.71 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=137.8
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC-----------CCcccccc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS-----------SRIIDGNF 112 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~-----------~~~ig~vf 112 (421)
|...++++|||++.+|+ ++||+|+||||||||+++|+|++ |+ +|.|.+||.++. ++.++|+|
T Consensus 27 ~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~ 103 (330)
T PRK09473 27 GDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIF 103 (330)
T ss_pred CCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEE
Confidence 34679999999999999 99999999999999999999999 65 999999999753 13699999
Q ss_pred CCC--CCCccchHHHHHHhhhccc-ccccc---ccccccccccc------------cccccccCceEEEeehhhhhhhcc
Q 014621 113 DDP--RLTDYDTLLENIRGLKEGK-AVQVP---IYDFKSSSRIG------------YRTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 113 q~p--~l~~~~tv~enl~~l~~~~-~i~~p---~~~~~~~~~~~------------~~~~~~~~qrVlIaegl~~L~d~l 174 (421)
|++ .+++.+++.+++....... ..... .......+..+ .+......|||.||+++ ..
T Consensus 104 Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL-----~~ 178 (330)
T PRK09473 104 QDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL-----LC 178 (330)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH-----Hc
Confidence 998 5677788888876432110 00000 00000001111 01111224999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|.++++||||++||+.....++ ++++++ |.|+ .+.+.++||++++|++|+|.+.++..+++
T Consensus 179 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 179 RPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999877554 666665 8888 78888999999999999999999888874
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=9.1e-26 Score=215.17 Aligned_cols=188 Identities=17% Similarity=0.247 Sum_probs=143.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc-c------------ccccccccccccccc---------ccccccCceEEEeehhh
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA-V------------QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~-i------------~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~ 168 (421)
++|++.+++..|+.+|+.+...... . .............+. +......||+.|++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al- 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL- 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH-
Confidence 9999999999999999976432110 0 000000000011110 0111234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+...+.+. +++.++|.|+ .+.+..+||+++++++|++...+...++
T Consensus 159 ----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ----ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred ----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 8999999999999999998766544 5665568877 7778899999999999999877766555
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.1e-25 Score=211.58 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=138.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4678888887889999999999999 99999999999999999999999 89999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---ccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..|+.+|+............. .........+. +......||+.|++++ ..+|.++++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al-----~~~p~~lll 154 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL-----AREPSLLLL 154 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999988899999997542110000000 00000011110 1111234999999999 899999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
||||+++|+....++. +++.++ |.|+ .+.+.++||+++.+++|++...
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999766554 555543 8887 6778899999999999998654
No 47
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6.7e-26 Score=221.11 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=151.8
Q ss_pred eeecCcceecCee-----------eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe
Q 014621 26 VKKKDSDRYEIVP-----------IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (421)
Q Consensus 26 ~~~~~~~~y~~~~-----------v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~ 93 (421)
+.++.+++|...+ ..+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~ 78 (269)
T cd03294 2 KIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred ccccchhhcCCchhHHHHHHhhhhhhhhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4455677775433 35578888999999999999999999 99999999999999999999999 899
Q ss_pred eEEEECCeecC-----------CCccccccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc--------
Q 014621 94 AVITMDNYNDS-----------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY-------- 151 (421)
Q Consensus 94 G~I~~Dg~~~~-----------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~-------- 151 (421)
|.|.++|.+.. ++.++|++|++.+++..|+.+|+........... ...-....+..+.
T Consensus 79 G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 79 GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred eEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc
Confidence 99999998643 2468999999999988999999976421100000 0000000011110
Q ss_pred -ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEE
Q 014621 152 -RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYP 220 (421)
Q Consensus 152 -~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~ 220 (421)
+......||+.|++++ ..+|.++++|||++++|+...+.+. +++.++ |.|+ ++.+.++||++++
T Consensus 159 ~~LS~Gq~qrv~lAral-----~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~ 233 (269)
T cd03294 159 DELSGGMQQRVGLARAL-----AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI 233 (269)
T ss_pred ccCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 1111234999999999 9999999999999999999766554 566544 7787 6778899999999
Q ss_pred ccCcEEeecCCcccE
Q 014621 221 MYKAFIEPDLQTAHI 235 (421)
Q Consensus 221 m~~g~I~p~~~~aDi 235 (421)
|++|.+...+...++
T Consensus 234 l~~G~i~~~g~~~~~ 248 (269)
T cd03294 234 MKDGRLVQVGTPEEI 248 (269)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999877766555
No 48
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-25 Score=223.49 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=135.0
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-----------CCccccccC
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----------SRIIDGNFD 113 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p----~~G~I~~Dg~~~~-----------~~~ig~vfq 113 (421)
..+|+||||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++. ++.++|+||
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 20 FRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred EEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 679999999999999 99999999999999999999998 3 7899999998753 135899999
Q ss_pred CCC--CCccchHHHHHHhhhc---ccc-cccccccccccccccc------------ccccccCceEEEeehhhhhhhccC
Q 014621 114 DPR--LTDYDTLLENIRGLKE---GKA-VQVPIYDFKSSSRIGY------------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 114 ~p~--l~~~~tv~enl~~l~~---~~~-i~~p~~~~~~~~~~~~------------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++. +++.+++.+++..... +.. .+.........+..+. +......|||.|++++ ..+
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL-----~~~ 171 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI-----ACR 171 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHH-----HhC
Confidence 984 6777788777654321 100 0000000000111110 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++||||++||+.....++ +++++ .|.|+ ++.+.++||++++|++|+|.+.++..+++
T Consensus 172 P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999776554 66665 48887 78889999999999999999999888773
No 49
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=1.2e-25 Score=212.25 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=143.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.+||.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc-cc--ccc---cc-cc-ccccccc---ccccccCceEEEeehhhhhhhccCCccc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA-VQ--VPI---YD-FK-SSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~-i~--~p~---~~-~~-~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+||++.+++..|+.+|+.+...... .. ... .+ +. ....... +......||+.|++++ ..+|.++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~ll 154 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL-----MSRPKLL 154 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 9999999998999999976432110 00 000 00 00 0000000 1111234999999999 8999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++|||++++|+.....++ +++.++|.|+ .+.+.++||++++|++|++...++..++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 999999999999766554 5555567777 7778899999999999999876655443
No 50
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=9.4e-26 Score=228.76 Aligned_cols=181 Identities=16% Similarity=0.089 Sum_probs=143.2
Q ss_pred EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCccccccC
Q 014621 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFD 113 (421)
Q Consensus 46 ~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig~vfq 113 (421)
.||.+.+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++|+||
T Consensus 2 ~~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 3577889999999999999 99999999999999999999999 99999999998754 457999999
Q ss_pred CCCCCccchHHHHHHhhhccccc-----ccccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAV-----QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
++.+++.+|+.+|+.+....... .....+ ..+..+. +......|||.|++++ ..+|.++
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~--~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL-----~~~p~iL 151 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALE--LLKLVGLEEYEHRYPDELSGGMQQRVGLARAL-----AAEPDIL 151 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH--HHHhcCCchhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 99999999999999875321100 000000 0111111 1111234999999999 9999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 180 LRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++|||++++|+...+.+. ++++++ |+|+ ++.+.++||++++|.+|++...+...++.
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999877665 555544 8887 77789999999999999999888777763
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.5e-25 Score=213.02 Aligned_cols=188 Identities=18% Similarity=0.183 Sum_probs=143.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 5677888887889999999999999 99999999999999999999999 89999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccc----ccc---cccccccccccc---------ccccccCceEEEeehhhhhhhccCCc
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAV----QVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i----~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
++.+++..|+.+|+.+....... ... ..-.......+. +......||+.|++++ ..+|.
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~ 156 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL-----AVEPK 156 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 99998889999999764211000 000 000000011110 1111234999999999 89999
Q ss_pred cceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 178 IDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++++|||++++|+...+.+ +++++++ |.|+ .+.+..+||++++|.+|.+...+...++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999976655 4666554 7887 6778899999999999999887766555
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=1.3e-25 Score=211.58 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=135.1
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CC
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~ 106 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4677777743 579999999999999 99999999999999999999999 89999999998652 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccc-----cccccccccccccc---------cccccccCceEEEeehhhhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAV-----QVPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d 172 (421)
.++|++|++.+++..|+.+|+.+....... .....+ ..+..+ .+......||+.|++++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LSgG~~qrv~laral----- 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSA--ALEKVGLEGKAHALPMQLSGGEQQRVAIARAI----- 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHH--HHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 689999999999889999999864211000 000000 001111 01111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..+|.++++||||+++|+...+.+. ++++++|.|+ .+.+.++||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999776554 5555557777 7788899999999998864
No 53
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=2.1e-25 Score=228.92 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=148.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+++.+|+++||++++|+ ++||+||||||||||+|+|+|++ |++|.|.++|.+.. ++.++++
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4678888888899999999999999 99999999999999999999999 99999999998753 3568999
Q ss_pred cCCCCCCccchHHHHHHhhhccc--ccc-ccccc----ccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGK--AVQ-VPIYD----FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~--~i~-~p~~~----~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|++.++..+++.+|+...+... ... ....+ ....+..+. +......||+.|++++ ..+
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL-----~~~ 157 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL-----AQA 157 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 99999988899999997643210 000 00000 000111111 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++||||++||+.... +++++++++|.|+ .+.+.++||+++.|++|++...+...+++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999998654 5557777678887 88899999999999999999888877764
No 54
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=1.6e-25 Score=221.96 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=140.5
Q ss_pred EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccccccCCCCCC
Q 014621 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLT 118 (421)
Q Consensus 46 ~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vfq~p~l~ 118 (421)
.|+.+.+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++.++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 4567789999999999999 99999999999999999999999 99999999998753 34689999999999
Q ss_pred ccchHHHHHHhhhcccccc-----cccc----ccccccccc---cccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 119 DYDTLLENIRGLKEGKAVQ-----VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~-----~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
+..|+.+|+.+........ .... .+....... ........||+.||+++ ...|.++++||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASL-----IHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCc
Confidence 9999999998643211000 0000 000000000 01111234999999999 99999999999999
Q ss_pred CccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 187 GVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 187 ~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+||+...+.+ +++++++|.|+ ++.+.++||++++|++|++...+...++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999876554 46666668887 7888999999999999999887766654
No 55
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.1e-25 Score=213.19 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=141.5
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.+++++.|+. ..+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4678888876 789999999999999 99999999999999999999999 89999999998653 235
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc--------cc-cccccc--ccccccccc---------ccccccCceEEEeehh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK--------AV-QVPIYD--FKSSSRIGY---------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~--------~i-~~p~~~--~~~~~~~~~---------~~~~~~~qrVlIaegl 167 (421)
++|++|++.+++..|+.+|+....... .. ...... .......+. +......||+.|++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 899999999988899999997532110 00 000000 000001110 1111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
..+|.++++|||++++|+...+.+ ++++.++ |.|+ .+.+..+||++++|.+|++...+...+
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 160 -----MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred -----hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 999999999999999999976655 4666544 8887 777889999999999999977665544
No 56
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1.3e-25 Score=233.91 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=148.2
Q ss_pred eeeeecCcceecCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC----eeEEEE
Q 014621 24 QLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS----IAVITM 98 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~----~G~I~~ 98 (421)
.|++++++..|... .+...+++||||++.+|| ++||+|.|||||||++++|.|++ +. .|.|.+
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~ 72 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVIL 72 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEE
Confidence 56666666666321 233689999999999999 99999999999999999999999 33 799999
Q ss_pred CCeecC-----------CCccccccCCCC--CCccchHHHHHHhhhc-cc----------------ccccc--cc-cccc
Q 014621 99 DNYNDS-----------SRIIDGNFDDPR--LTDYDTLLENIRGLKE-GK----------------AVQVP--IY-DFKS 145 (421)
Q Consensus 99 Dg~~~~-----------~~~ig~vfq~p~--l~~~~tv~enl~~l~~-~~----------------~i~~p--~~-~~~~ 145 (421)
+|.++. .+.|+|+||+|. +.+.+++.+.+..... .. .+..| .. +..+
T Consensus 73 ~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 73 DGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred CCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 998542 256999999984 4555788777765321 10 01111 11 1233
Q ss_pred ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHh
Q 014621 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQIS 215 (421)
Q Consensus 146 ~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~ 215 (421)
++.+|++ .|||+||.|+ +.+|.++++||||++||+.+...|+ +++.++ |.++ ++++.++|
T Consensus 153 heLSGG~-----rQRv~iAmAL-----a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 153 HQLSGGM-----RQRVMIAMAL-----ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA 222 (539)
T ss_pred cccCchH-----HHHHHHHHHH-----hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc
Confidence 3444433 3999999999 9999999999999999999887765 777654 8888 99999999
Q ss_pred ceEEEccCcEEeecCCcccEE
Q 014621 216 ETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 216 d~V~~m~~g~I~p~~~~aDii 236 (421)
|+|.+|++|.++++++..+++
T Consensus 223 Drv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 223 DRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred CeEEEEECCEEEEecCHHHHH
Confidence 999999999999999999994
No 57
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-25 Score=223.06 Aligned_cols=181 Identities=12% Similarity=0.197 Sum_probs=137.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-----CeeEEEECCeecC-----------CCccccc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDS-----------SRIIDGN 111 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-----~~G~I~~Dg~~~~-----------~~~ig~v 111 (421)
+...++++|||++.+|+ ++||+|+||||||||+++|+|+++ ++|.|.+||.++. ++.++|+
T Consensus 18 ~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 18 GWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred CCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 45789999999999999 999999999999999999999982 6899999998753 1368999
Q ss_pred cCCCC--CCccchHHHHHHhhhcccc-----c----ccccccccccccccc------------ccccccCceEEEeehhh
Q 014621 112 FDDPR--LTDYDTLLENIRGLKEGKA-----V----QVPIYDFKSSSRIGY------------RTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 112 fq~p~--l~~~~tv~enl~~l~~~~~-----i----~~p~~~~~~~~~~~~------------~~~~~~~qrVlIaegl~ 168 (421)
||++. +++..++.+++........ . +.........+..+. +......|||.|++++
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL- 173 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIAL- 173 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHH-
Confidence 99986 5677889888864221100 0 000000001111111 1111234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||++||+...+.++ ++++++ |.|+ ++.+.++||++++|++|+|.+.+...++.
T Consensus 174 ----~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 174 ----ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred ----HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999998766554 666654 8888 88899999999999999999999887763
No 58
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.2e-25 Score=207.94 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=139.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---CCccccccCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---~~~ig~vfq~p 115 (421)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4678888888889999999999999 99999999999999999999998 89999999998653 45689999999
Q ss_pred CCCccchHHHHHHhhhcccccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 116 RLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
.+++..|+.+|+............ ..-.......+. +......||+.|++++ ..+|.+.++||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~~lllDE 154 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV-----IHDPELLILDE 154 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 999889999999764321100000 000000000110 1111234899999999 89999999999
Q ss_pred EecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 184 VTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 184 pts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
|++++|+...+.+. +++.++|.|+ .+.+.++||++++|.+|++...
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 99999998766554 5555567777 6778889999999999998653
No 59
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=2.9e-25 Score=207.92 Aligned_cols=180 Identities=21% Similarity=0.211 Sum_probs=139.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4678888888899999999999999 99999999999999999999999 89999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccc-cccccccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~-p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
++.+++..|+.+|+........... .... ..+..+ .+......||+.+++++ ..+|.++++||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~llllDE 152 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDE--VLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL-----LGNPDLLILDE 152 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHH--HHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH-----hcCCCEEEECC
Confidence 9999989999999976432110000 0000 001111 01112234899999999 89999999999
Q ss_pred EecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 184 VTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 184 pts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
||+++|+.....+. ++++++|.|+ .+.+..+||+++.|++|++...
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999876554 5555567776 6778899999999999998653
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=2.9e-25 Score=211.15 Aligned_cols=188 Identities=19% Similarity=0.181 Sum_probs=143.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998642 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccc---ccccccccc---------ccccccCceEEEeehhhhhhhccCCcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~---~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
++|++.+++..|+.+|+............... .......+. .......||+.|++++ ...|.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~l 154 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL-----ATNPKF 154 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hcCCCE
Confidence 99999999989999999764321110000000 000001110 1111234999999999 999999
Q ss_pred ceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 179 DLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++|||++++|+...+.+ ++++.++|.|+ .+.+.++||++++|++|++...++..++
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999976654 45666668777 6788999999999999999766655444
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.7e-25 Score=209.10 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=139.1
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCcccccc
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vf 112 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 4677788876 789999999999999 99999999999999999999998 89999999998764 35689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc---ccccccccccc---------cccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++..|+.+|+............ ..-.......+ .+......||+.|++++ ..+|.+.+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al-----~~~p~lll 154 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL-----AVDPDVLL 154 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEEE
Confidence 999988889999999764221100000 00000001111 01111234999999999 89999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEcc--CcEEeecC
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMY--KAFIEPDL 230 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~--~g~I~p~~ 230 (421)
+||||+++|+.....+. +++.+ .|.|+ .+.+..+||++++|+ +|++.+..
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 99999999999776554 55544 47777 677889999999999 79987654
No 62
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=5e-25 Score=212.01 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=142.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.+..
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4567777777789999999999999 99999999999999999999999 89999999997542
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhc---cccc-ccccccccccccccc---------ccccccCceEEEeehhhhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE---GKAV-QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~---~~~i-~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L 170 (421)
++.++|++|++.+++..|+.+|+..... +... .............+. +......||+.|++++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al--- 159 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARAL--- 159 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHH---
Confidence 2358999999999988999999975321 1000 000000000011110 1111234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+...+.+. +++.++|.|+ .+.+.++||++++|++|++...+...++
T Consensus 160 --~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 160 --AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred --hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998766554 5666668777 6778899999999999999877766555
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=7.3e-25 Score=205.80 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=139.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+++++|
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 245899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccc---ccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..|+.+|+............. .-.......+. +......||+.|++++ ...|.+.++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral-----~~~p~llll 154 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI-----VREPKVFLM 154 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999888889999997642110000000 00000111110 1111234899999999 889999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
|||++++|+...+.+. ++++++ |.|+ .+.+.++||+++.+++|++...
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999776554 565554 7777 6778899999999999998654
No 64
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=4e-25 Score=219.09 Aligned_cols=188 Identities=15% Similarity=0.138 Sum_probs=146.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 5678888888899999999999999 99999999999999999999999 99999999998753 24689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc-----ccc------cccccc-cccccccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQ-----VPI------YDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~-----~p~------~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++..|+.+|+.+........ ... ...... .+..........||+.+++++ ..+|.+++
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~lli 156 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL-----IHDPKVLI 156 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9999999999999998643211000 000 010000 000001112234999999999 99999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+||||+++|+...+.+. ++++ ++.|+ ++.+.++||+++++++|++...+...++.
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999766555 5554 36776 78899999999999999999888877763
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=5.2e-25 Score=207.81 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=141.1
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~ 110 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4677888876 789999999999999 99999999999999999999999 89999999998753 346899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccc-----ccccc----cccccccc---cccccccCceEEEeehhhhhhhccCCcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
++|++.+++..|+.+|+.+........ ..... +....... .+......||+.|++++ ..+|.+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL-----IGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHH-----hcCCCE
Confidence 999999998899999997643211000 00000 00000000 01111234999999999 899999
Q ss_pred ceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 179 DLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
+++|||++++|+...+.+. +++++ +.|+ .+.+.++||+++.+++|.+...+...+
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999877665 44443 5666 777889999999999999987765443
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=2.6e-25 Score=212.93 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=140.6
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.+++++.|+ ...+++++||++.+|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 467777776 6789999999999999 99999999999999999999999 89999999998643 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc-----------ccccccccccccccccc---------ccccccCceEEEeehh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK-----------AVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~-----------~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl 167 (421)
++|++|++.+++..|+.+|+....... ...............+. +......||+.|++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999998899999997532110 00000000000011110 1111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
..+|.++++|||++++|+...+.+ ++++.++ |.|+ .+.+.++||++++|.+|++...+...+
T Consensus 161 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 161 -----AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 999999999999999999876554 4566544 7777 677889999999999999987665544
No 67
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=3.6e-25 Score=206.99 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=133.8
Q ss_pred eeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccCC
Q 014621 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (421)
Q Consensus 41 ~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq~ 114 (421)
+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|+
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 567788876 789999999999999 99999999999999999999999 89999999998753 3468999999
Q ss_pred CC-CCccchHHHHHHhhhcccccc-cccc----ccccccccc---cccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 115 PR-LTDYDTLLENIRGLKEGKAVQ-VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 115 p~-l~~~~tv~enl~~l~~~~~i~-~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+. .+...|+.+|+.......... .... .+....... ........||+.|++++ ..+|.++++|||+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEPt 154 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL-----LSGKDLLIFDEPT 154 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCC
Confidence 74 334569999997643211100 0000 000000000 01111234999999999 8899999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 186 GGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
+++|+...+.+. ++++++|.|+ .+.+..+||++++|++|++
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999998766554 5665568777 6778899999999999986
No 68
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=5.3e-25 Score=209.28 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=143.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|+|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccccc-cccccccccccc-------cc---ccccccCceEEEeehhhhhhhccCCccc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRI-------GY---RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~-~p~~~~~~~~~~-------~~---~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
++|++.+++..++.+|+.+........ ..... ...... .. .......||+.|++++ ..+|.+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~il 153 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPD-EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL-----VTRPKLL 153 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHH-HHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 999999999889999997643211000 00000 000000 00 1111234899999999 9999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++|||++++|+.....+. +++.++ |.|+ .+.+..+||+++++++|++...++..++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999766554 555554 7777 7778899999999999999877655443
No 69
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.9e-25 Score=211.50 Aligned_cols=188 Identities=20% Similarity=0.222 Sum_probs=142.0
Q ss_pred eeeeEEEeCcE----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+.. .+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.+..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 45677777654 89999999999999 99999999999999999999999 89999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d 172 (421)
++.++|++|++.+++..|+.+|+.+......... ........+..+. .......||+.|++++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al----- 155 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL----- 155 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHH-----
Confidence 2458999999999988999999976421110000 0000000111110 1111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.+.++|||++++|+.....+ ++++.++ |.|+ .+.+.++||+++.|++|++...+...++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 899999999999999999876654 4666554 8887 7778899999999999999877765554
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=3.9e-25 Score=208.34 Aligned_cols=178 Identities=22% Similarity=0.235 Sum_probs=134.0
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 4677888875 789999999999999 99999999999999999999999 89999999998643
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|++|++.+++..|+.+|+.+........ ....-.......+. +......||+.|++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al---- 155 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL---- 155 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH----
Confidence 245899999999998889999998643211000 00000000011110 1111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEccCcEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..+|.++++|||++++|+.....+ ++++.+ +|.|+ .+.+. +||++++|++|++
T Consensus 156 -~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 -ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred -ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999876655 466655 47777 55566 9999999998863
No 71
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.2e-25 Score=199.68 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=132.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.+.. ++.++|+|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4677888877789999999999999 99999999999999999999999 89999999998653 34689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~ 192 (421)
|++.+++..++.+|+. .+++ ..||+.|++++ ..+|.+.++|||++++|+..
T Consensus 80 q~~~~~~~~tv~~~~~-------------------LS~G-----~~qrv~laral-----~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 80 EEPSLYENLTVRENLK-------------------LSGG-----MKQRLALAQAL-----LHDPELLILDEPTSGLDPES 130 (173)
T ss_pred cCCccccCCcHHHHhh-------------------cCHH-----HHHHHHHHHHH-----HcCCCEEEEeCCccCCCHHH
Confidence 9999988889999985 2232 23789999999 99999999999999999997
Q ss_pred HHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 193 VKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 193 ~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..++. +++.++|.|+ .+.+.++||+++.|++|++
T Consensus 131 ~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 131 RREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 66554 5665567776 6778889999999998853
No 72
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=5.4e-25 Score=210.63 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=143.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig 109 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 4677888887889999999999999 99999999999999999999999 89999999998753 23589
Q ss_pred cccCCCCCCccchHHHHHHhhhcc-ccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEG-KAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~-~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++.+++..|+.+|+.+.... ..... ........+..+. .......||+.|++++ ..+|
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al-----~~~p 155 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL-----AVKP 155 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH-----hcCC
Confidence 999999988889999999763210 00000 0000000111111 1111234899999999 8999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.+.++|||++++|+.....+ ++++.++|.|+ .+.+..+||++++|++|++...++..++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999976654 45666568887 7778899999999999999887766655
No 73
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=5.3e-25 Score=207.48 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=138.4
Q ss_pred eeeeEEEeCcE----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcc
Q 014621 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~i 108 (421)
.+++++.|+.. .+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 46778888765 79999999999999 99999999999999999999999 89999999998653 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccCC
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
+|++|++.+++..++.+|+........... ...-....+..+. +......||+.|++++ ..+|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL-----VHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH-----hcCC
Confidence 999999999988999999976422110000 0000000011110 1111234899999999 9999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
.++++|||++++|+...+.+. +++.++|.|+ .+.+..+||+++.|.+|++...
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 999999999999998766554 5555568787 6778899999999999998653
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.92 E-value=6.9e-25 Score=213.91 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=142.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~i 108 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.++. ++.+
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 4567777777889999999999999 99999999999999999999999 89999999998653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc-cccccc-cc--ccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI-YD--FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~-~i~~p~-~~--~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||++.+++..|+.+|+....... ...... .. .......+. +......||+.|++++ ...
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral-----~~~ 161 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI-----ALE 161 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999999998889999997642110 000000 00 000011110 1111234999999999 889
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++||||++||+...+.+ +++++++ |.|+ .+.+.++||+++.|++|++...++..++
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999977654 4666554 7777 6788999999999999999887766655
No 75
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.3e-25 Score=226.48 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=153.8
Q ss_pred eeeeecCcceecCee-----------eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C
Q 014621 24 QLVKKKDSDRYEIVP-----------IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P 91 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~-----------v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p 91 (421)
+|+.++++|.|+-.+ -...+...||...+|+++||++++|+ +++|+||||||||||+++|+|++ |
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p 80 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEP 80 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCC
Confidence 678888888886533 12234455677789999999999999 99999999999999999999999 9
Q ss_pred CeeEEEECCeecC-----------CCccccccCCCCCCccchHHHHHHhhhc--cccc-cccccccccccccc-------
Q 014621 92 SIAVITMDNYNDS-----------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAV-QVPIYDFKSSSRIG------- 150 (421)
Q Consensus 92 ~~G~I~~Dg~~~~-----------~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~i-~~p~~~~~~~~~~~------- 150 (421)
++|.|.++|.++. ++.++|+||++.+++..|+.+|+.+... +... +.........+..+
T Consensus 81 ~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~ 160 (400)
T PRK10070 81 TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160 (400)
T ss_pred CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc
Confidence 9999999998753 2368999999999999999999986432 1000 00000000001111
Q ss_pred --cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceE
Q 014621 151 --YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETV 218 (421)
Q Consensus 151 --~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V 218 (421)
.+......||+.|++++ ..+|.++++|||+++||+...+.+. +++.+ .|.|+ ++.+.++||++
T Consensus 161 ~~~~LSgGq~QRv~LArAL-----~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 161 YPDELSGGMRQRVGLARAL-----AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred CcccCCHHHHHHHHHHHHH-----hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence 01111234999999999 9999999999999999999766554 55554 48887 77788999999
Q ss_pred EEccCcEEeecCCcccE
Q 014621 219 YPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDi 235 (421)
++|.+|++...+...++
T Consensus 236 ~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEI 252 (400)
T ss_pred EEEECCEEEecCCHHHH
Confidence 99999999887776665
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.8e-25 Score=215.15 Aligned_cols=185 Identities=10% Similarity=0.107 Sum_probs=140.7
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 566777774 4679999999999999 99999999999999999999999 89999999998753 245899
Q ss_pred ccCCCC-CCccchHHHHHHhhhcccccc-----cccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 111 NFDDPR-LTDYDTLLENIRGLKEGKAVQ-----VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 111 vfq~p~-l~~~~tv~enl~~l~~~~~i~-----~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+||+|. .+...|+.+|+.+........ ..... ..+..+. +......||+.|++++ ...
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL-----~~~ 156 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE--ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL-----AMD 156 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHH--HHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH-----HcC
Confidence 999984 445579999998643211000 00000 0011110 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
|.++++||||+++|+.....+ +++++++|.|+ ++.+.++||++++|++|.+...+...+
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999976655 46666668887 778889999999999999998887644
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7.9e-25 Score=215.59 Aligned_cols=188 Identities=13% Similarity=0.155 Sum_probs=140.5
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. +.+|++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+||++..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4566666643 479999999999999 99999999999999999999999 99999999998753
Q ss_pred CCccccccCCCC-CCccchHHHHHHhhhcccccccc---cccccccccccc-----------ccccccCceEEEeehhhh
Q 014621 105 SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY-----------RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ~~~ig~vfq~p~-l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~-----------~~~~~~~qrVlIaegl~~ 169 (421)
++.++|+||+|. .+...|+.+|+.+.......... .......+..+. +......||+.|++++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL-- 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV-- 159 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH--
Confidence 246899999984 33357999999864321100000 000000011110 1111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++||||++||+....++ +++++++ |.|+ ++.+.++||++++|++|++...+...++
T Consensus 160 ---~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 160 ---AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred ---HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999876655 4666655 8887 6778899999999999999988877766
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=4.6e-25 Score=224.91 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=144.1
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe----ecC-----------C
Q 014621 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------S 105 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~----~~~-----------~ 105 (421)
.+...||...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||. +.. +
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 34567888999999999999999 99999999999999999999999 99999999985 221 1
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhc
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~ 173 (421)
+.++|+||++.+++..|+.+|+.+.......... .......+..+. +......||+.|++++ .
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL-----a 180 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF-----A 180 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----h
Confidence 4699999999999999999999875321100000 000000111111 1111234999999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+|.++++|||+++||+...+.+. +++.++ |.|+ ++.+.++||++++|.+|++...+...+++
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999876655 555554 8887 77888999999999999999888877774
No 79
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9e-25 Score=209.62 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=141.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 5677788877889999999999999 99999999999999999999999 89999999998653 3468999
Q ss_pred cCCCCCCccchHHHHHHhhhccccc-ccc------ccccc--cccccccccccccCceEEEeehhhhhhhccCCccceEE
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKAV-QVP------IYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i-~~p------~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~D 182 (421)
+|++.+++ .++.+|+......... ... ..... .......+......||+.|++++ ..+|.++++|
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllD 156 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL-----ANNPEVLLLD 156 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 99998886 6999998753211100 000 00110 00000001111234999999999 8999999999
Q ss_pred EEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 183 SVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 183 Epts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
||++++|+...+.+. ++++++ |.|+ .+.+.++||++++|++|.+...+...++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 157 EPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999998766544 555554 8887 6778899999999999999877766665
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7e-25 Score=216.29 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=141.3
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. ..+|++|||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4567777753 569999999999999 99999999999999999999999 99999999998652
Q ss_pred --CCccccccCCCC--CCccchHHHHHHhhhcccccc-----cc------ccccc-c-ccccccccccccCceEEEeehh
Q 014621 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQ-----VP------IYDFK-S-SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 --~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~~i~-----~p------~~~~~-~-~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||+|. ++ ..|+.+|+.+........ .. ..... . .............||+.|++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 245899999983 44 469999998643211000 00 00110 0 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||++||+.....+ +++++++ |.|+ ++.+.++||++++|++|++...+...++.
T Consensus 161 -----~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 161 -----AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred -----HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999976654 4666654 8887 78889999999999999999888777663
No 81
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=1e-24 Score=208.82 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=142.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4677888877789999999999999 99999999999999999999999 99999999998653 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc-c----------ccccccccccccccc---------ccccccCceEEEeehhhhh
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA-V----------QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~-i----------~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L 170 (421)
++|++.+++..|+.+|+........ . .............+. .......||+.|++++
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral--- 158 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL--- 158 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH---
Confidence 9999999999999999976422100 0 000000000111111 0111134899999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++||||+++|+...+.+. +++.+ +.|+ .+.+.++||+++++++|++...+...++
T Consensus 159 --~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 --MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred --hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 8999999999999999999776554 55544 6676 7778899999999999999877766554
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.5e-25 Score=209.09 Aligned_cols=188 Identities=16% Similarity=0.127 Sum_probs=143.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+.+.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 4567777777789999999999999 99999999999999999999999 89999999998653 246899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-ccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhccCCc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK-AVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
++|++.+++..|+.+|+....... ..... ..........+. +......||+.|++++ ...|.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~ 157 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL-----AANPK 157 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 999999998899999997642110 00000 000000000010 1111234899999999 99999
Q ss_pred cceEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 178 IDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++++||||+++|+..... ++++++++|.|+ .+.+..+||+++.|++|++...++..++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999999999987654 456666668887 6778899999999999999877766554
No 83
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=208.69 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=141.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------C
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------S 105 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------~ 105 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. +
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4577778877789999999999999 99999999999999999999999 89999999998641 2
Q ss_pred CccccccCCCCCCccchHHHHHHhhh-c--cccc-ccccccccccccccc---------ccccccCceEEEeehhhhhhh
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E--GKAV-QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~-~--~~~i-~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d 172 (421)
+.++|++|++.+++..|+.+|+.... . +... .............+. +......||+.|++++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral----- 156 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL----- 156 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----
Confidence 45899999999999899999996421 1 1000 000000000001110 1111234899999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. +++.++|.|+ .+.+.++||++++|.+|++...++..++
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 8999999999999999999766554 5665568887 6777889999999999999877765543
No 84
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.91 E-value=1.4e-24 Score=210.14 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=144.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------------- 104 (421)
-.+++++.|+++.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|....
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 7 NVIDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 46678888877889999999999999 99999999999999999999999 89999999997642
Q ss_pred -------CCccccccCCCCCCccchHHHHHHhhhc---c-cccccccccccccccccc----------ccccccCceEEE
Q 014621 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE---G-KAVQVPIYDFKSSSRIGY----------RTLEVPSSRIVI 163 (421)
Q Consensus 105 -------~~~ig~vfq~p~l~~~~tv~enl~~l~~---~-~~i~~p~~~~~~~~~~~~----------~~~~~~~qrVlI 163 (421)
++.++|++|++.+++..++.+|+.+... + .............+..+. +......||+.|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 2458999999999988999999975211 1 000000000000111110 111123499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
++++ ..+|.+.++|||++++|+...+.+. +++++.|.|+ .+.+..+||+++++++|++...++..+
T Consensus 164 aral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 164 ARAL-----AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999 9999999999999999999766554 5565568887 777889999999999999987776655
Q ss_pred E
Q 014621 235 I 235 (421)
Q Consensus 235 i 235 (421)
+
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
No 85
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=1.8e-24 Score=208.61 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=143.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4678888888889999999999999 99999999999999999999999 89999999998642
Q ss_pred ------CCccccccCCCCCCccchHHHHHHhhhc-ccccccc---cccccccccccc---------ccccccCceEEEee
Q 014621 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLKE-GKAVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIE 165 (421)
Q Consensus 105 ------~~~ig~vfq~p~l~~~~tv~enl~~l~~-~~~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIae 165 (421)
++.+++++|++.+++..|+.+|+..... ....... ..........+. +......||+.|++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 3468999999999988999999976321 0000000 000000111110 11112348999999
Q ss_pred hhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 166 gl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++ ..+|.+.++|||+++||+.....+ ++++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 160 al-----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 160 AL-----AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HH-----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99 899999999999999999876654 4666554 8777 6778889999999999999887766655
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.6e-25 Score=216.92 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=140.5
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. ..+|+++||++.+|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4567777753 369999999999999 99999999999999999999999 89999999876420
Q ss_pred ----------------------CCccccccCCCC-CCccchHHHHHHhhhccccc-----cccc------cccc--cccc
Q 014621 105 ----------------------SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAV-----QVPI------YDFK--SSSR 148 (421)
Q Consensus 105 ----------------------~~~ig~vfq~p~-l~~~~tv~enl~~l~~~~~i-----~~p~------~~~~--~~~~ 148 (421)
++.+||+||+|. .+...|+.+|+.+....... .... ..+. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 345899999873 33456999999864321110 0000 0110 0000
Q ss_pred cccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEE
Q 014621 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVY 219 (421)
Q Consensus 149 ~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~ 219 (421)
..........||+.||+++ ...|.++++||||+++|+.....+ +++++++|.|+ ++.+.++||+++
T Consensus 162 ~~~~LSgGqkqrvalA~aL-----~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 162 SPFELSGGQKRRVALAGIL-----AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred ChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 0001111234999999999 999999999999999999876654 46666668887 778889999999
Q ss_pred EccCcEEeecCCcccEE
Q 014621 220 PMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 220 ~m~~g~I~p~~~~aDii 236 (421)
+|++|++...+...++.
T Consensus 237 vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 237 FFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999888877763
No 87
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.6e-25 Score=208.87 Aligned_cols=188 Identities=14% Similarity=0.093 Sum_probs=143.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 4667777777789999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc---ccccccc----cc-ccccccc---ccccccCceEEEeehhhhhhhccCCccc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA---VQVPIYD----FK-SSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~---i~~p~~~----~~-~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
++|++.+++..|+.+|+........ ....... +. ....... .......||+.|++++ ..+|.++
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~il 159 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL-----MSQPRLL 159 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH-----HhCCCEE
Confidence 9999999988899999976321100 0000000 00 0000000 1111234899999999 8999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++|||++++|+...+.+ ++++.++|.|+ .+.+.++||+++++++|++...+...++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999976655 46666668887 6778899999999999999888776666
No 88
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=214.56 Aligned_cols=188 Identities=14% Similarity=0.180 Sum_probs=141.6
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. ..+|+++||++.+|+ +++|+|+||||||||+++|+|++ |++|.|.+||.+..
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4567777752 359999999999999 99999999999999999999999 99999999998752
Q ss_pred --CCccccccCCC--CCCccchHHHHHHhhhccccc-----cccc------ccccc--ccccccccccccCceEEEeehh
Q 014621 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAV-----QVPI------YDFKS--SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 --~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~~i-----~~p~------~~~~~--~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||+| .++. .|+.+|+.+....... .... ..... ..+..........||+.|++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 24589999998 4554 5999999875321110 0000 00000 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+...+.+. ++++++|.|+ ++.+.++||++++|.+|.+...+...++.
T Consensus 160 -----~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 160 -----AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred -----HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999766554 5666568888 78888999999999999999988877763
No 89
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.6e-24 Score=207.74 Aligned_cols=188 Identities=16% Similarity=0.100 Sum_probs=142.4
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |+.|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4678888877 789999999999999 99999999999999999999999 89999999998653 246899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc-----------ccccccCceEEEeehhhhhhhccCC
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY-----------RTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~-----------~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
++|++.+++..|+.+|+.+......... ...........+. +......||+.|++++ ..+|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral-----~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-----AADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH-----hcCC
Confidence 9999999988999999976421100000 0000000011110 1111234999999999 8999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++|||++++|+.....+. +++.++ |.|+ .+.+..+||+++++++|++...++..++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999766554 555544 7877 6677899999999999999876655444
No 90
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=1.2e-24 Score=204.08 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=136.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig 109 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4678888888889999999999999 99999999999999999999999 89999999998652 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhc---cccc-ccccccccccccccc---------ccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKE---GKAV-QVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~---~~~i-~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++.+++..++.+|+..... +... .............+. +......||+.+++++ ..+|
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p 154 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-----AMNP 154 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH-----hcCC
Confidence 99999999988999999976421 1000 000000000011110 1111234899999999 9999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
.++++|||++++|+.....+ ++++.++|.|+ .+.+.++||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999876554 46666668777 7778899999999998863
No 91
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=1e-24 Score=205.02 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=134.1
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.+++++.| +...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 45677777 45789999999999999 99999999999999999999999 89999999998653 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|++|++.+++..|+.+|+.......... ....-....+..+. +......||+.|++++ ..+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~ 155 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI-----VNS 155 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH-----hCC
Confidence 899999999998899999997642110000 00000000001110 1111234999999999 899
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
|.++++||||+++|+.....+. +++.++|.|+ .+.+..+||++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999766554 5655568777 677889999999998873
No 92
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=1.9e-24 Score=209.80 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=139.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq~p~ 116 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.... ++.++|++|++.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 5677888877889999999999999 99999999999999999999999 89999999987643 456899999999
Q ss_pred CCccchHHHHHHhhhccc---cccc--cccccccc-cccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014621 117 LTDYDTLLENIRGLKEGK---AVQV--PIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~---~i~~--p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
+++..|+.+|+.+..... .+.. ........ ............||+.|++++ ...|.++++||||++||+
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL-----~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL-----IHRPGLLLLDEPLGALDA 166 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCH
Confidence 998889999997642110 0000 00000000 000001111234899999999 899999999999999999
Q ss_pred HHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 191 DLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 191 ~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
...+.+. +++.+ .|.|+ .+.+..+||+++++++|.+...+.
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 9776554 55544 47776 677889999999999999976554
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=1.7e-24 Score=208.17 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=141.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 4678888887889999999999999 99999999999999999999999 77 999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccc-c---c--ccccc----cccc----cccc---cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-V---Q--VPIYD----FKSS----SRIG---YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~-i---~--~p~~~----~~~~----~~~~---~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++ .++.+|+.+...... . . ..... +... .... .+......||+.|++++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 245899999999888 999999976421110 0 0 00000 0000 0000 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+.....+. +++.+ +.|+ .+.+.++||++++|++|++...+...++
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 160 -----AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998766554 55544 4666 7778899999999999999877766655
No 94
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.3e-24 Score=206.18 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=139.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |.+|.|.++|.+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4678888888889999999999999 99999999999999999999997 57999999998643
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccccccccccccc-----------cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYDFKSSSRIG-----------YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~~~~~~~~~-----------~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.++ ..|+.+|+.+....... ...... ..+..+ .+......||+.|++++
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEE--ALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHH--HHHHcCCChHHhccCCcccCCHHHHHHHHHHHHH
Confidence 24589999999888 78999999764221100 000000 001111 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
..+|.++++||||+++|+.....+. ++++++ .|+ .+.+..+||++++|.+|++...++..+
T Consensus 157 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 157 -----ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 8999999999999999999776655 555544 565 677888999999999999987765544
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=1.3e-24 Score=204.09 Aligned_cols=179 Identities=19% Similarity=0.197 Sum_probs=135.5
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4678888853 689999999999999 99999999999999999999999 89999999998653 235
Q ss_pred cccccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|++|++.+++..|+.+|+........... ...-....+..+. .......||+.|++++ ..+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI-----VNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH-----HcC
Confidence 8999999999998999999976432110000 0000000011110 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
|.+.++||||+++|+...+.+. +++.++|.|+ .+.+..+||++++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999766554 5665567777 6778889999999998863
No 96
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=7.6e-25 Score=212.72 Aligned_cols=205 Identities=15% Similarity=0.125 Sum_probs=154.4
Q ss_pred eeeeecCcceecCee------eeeee-----EEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C
Q 014621 24 QLVKKKDSDRYEIVP------IEDTL-----SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P 91 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~------v~~~l-----s~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p 91 (421)
.+..++.+|.|+..+ +.+.. ....|....++++||++++|| |+.|.|-||||||||+|+|+++. |
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiep 80 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEP 80 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCC
Confidence 456667777775322 11111 123466788999999999999 99999999999999999999999 9
Q ss_pred CeeEEEECCeecC-----------CCccccccCCCCCCccchHHHHHHhhhcccccccc---cccccccccccc------
Q 014621 92 SIAVITMDNYNDS-----------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY------ 151 (421)
Q Consensus 92 ~~G~I~~Dg~~~~-----------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~------ 151 (421)
++|.|.+||.++. +++++|+||++.++++.|+.+|+.+.++-..+... .......+.++.
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~ 160 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc
Confidence 9999999999754 46799999999999999999999987542221110 000011111111
Q ss_pred ---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceE
Q 014621 152 ---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETV 218 (421)
Q Consensus 152 ---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V 218 (421)
+......|||.+|||+ +.+|.+++.||+.|+|||-...++. .++.++ ++|| .+.+-++.||+
T Consensus 161 yp~eLSGGMqQRVGLARAl-----a~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 161 YPNELSGGMQQRVGLARAL-----ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred CcccccchHHHHHHHHHHH-----ccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE
Confidence 1111234999999999 9999999999999999997655554 333344 8888 78888999999
Q ss_pred EEccCcEEeecCCcccEE
Q 014621 219 YPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDii 236 (421)
+.|.+|+|+..|...+|+
T Consensus 236 aimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 236 AIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred EEecCCeEEEeCCHHHHH
Confidence 999999999999888885
No 97
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=1e-24 Score=205.02 Aligned_cols=178 Identities=14% Similarity=0.194 Sum_probs=133.0
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccCCCCC
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRL 117 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq~p~l 117 (421)
+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++.+
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 577888887889999999999999 99999999999999999999999 89999999997642 4568999999876
Q ss_pred Cc--cchHHHHHHhhhccc-c-----cc-cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 118 TD--YDTLLENIRGLKEGK-A-----VQ-VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 118 ~~--~~tv~enl~~l~~~~-~-----i~-~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
.. ..|+.+|+....... . .. ............+. +......||+.|++++ ..+|.++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~ll 154 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL-----VQDPDLL 154 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 32 379999997642210 0 00 00000000001110 1111234999999999 8999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 180 LRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
++||||++||+...+.+. ++++++|.|+ .+.+.++||++++|++|.+
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 999999999999776554 5555567776 6778899999999988643
No 98
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.1e-25 Score=206.52 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=148.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig 109 (421)
..+++..+|+.+.++++|||.+++|| ++|+.|||||||||..-++.|++ |++|.|.+||.+++ +..+|
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 45567777788899999999999999 99999999999999999999999 99999999999876 34589
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccc-----------ccccccc--ccc-ccccccccCceEEEeehhhhhhhccC
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVP-----------IYDFKSS--SRI-GYRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p-----------~~~~~~~--~~~-~~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
|.+|++..|...||.+||....+-...... ..+|... ... +......+..|+=|||++ +.+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL-----a~~ 157 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL-----AAN 157 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH-----hcC
Confidence 999999999999999999865432110000 0111111 000 111112234788899999 999
Q ss_pred CccceEEEEecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~---~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.+.++|||.++.||.. ++++++.++++|..+ ....-.+|||.+++++|++...|...+++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999999999985 556778888888776 33445699999999999999999888885
No 99
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=1.9e-24 Score=204.52 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=136.9
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------CCc
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------~~~ 107 (421)
.+++++.| +...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 46677777 56789999999999999 99999999999999999999999 89999999998652 245
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccccc-cc--cccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP-IY--DFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p-~~--~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|++|++.+++..++.+|+............ .. .....+..+. +......||+.|++++ ...
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV-----VNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH-----HcC
Confidence 89999999888889999999764211100000 00 0000011110 1111234999999999 899
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
|.++++||||+++|+...+.+ +++++++|.|+ .+.+.++||++++|++|++..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999876554 46665567776 788889999999999998854
No 100
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=4.8e-25 Score=207.62 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=150.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---CCccccccCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---~~~ig~vfq~p 115 (421)
.++++.+||.+.|++|+||++++|+ ++|++|+|||||||++|+|.|++ |+.|.|.++|..++ ...|||.+...
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 4567777889999999999999999 99999999999999999999999 99999999998776 35799999999
Q ss_pred CCCccchHHHHHHhhhc--ccc---cccccccccc-ccccc---c---ccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 116 RLTDYDTLLENIRGLKE--GKA---VQVPIYDFKS-SSRIG---Y---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~--~~~---i~~p~~~~~~-~~~~~---~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
.+++.+|+.+.+.++.. +.+ +......|.. ....+ . +......|++-++-++ ...|.+.++||
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav-----iHePeLlILDE 156 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV-----IHEPELLILDE 156 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH-----hcCCCEEEecC
Confidence 99999999999988643 211 1111101100 00001 0 1112233676666677 88999999999
Q ss_pred EecCccHHHH---HHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 184 VTGGVHFDLV---KRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 184 pts~LD~~~~---rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.|+|||... +..+.+++++|.|| |+.++++||++..+.+|..+-.|...++.
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence 9999999754 56678899999999 99999999999999999999999888873
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=209.00 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=141.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 5678888888889999999999999 99999999999999999999999 89999999998653 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccccc--c-cccccccccccccc---------ccccccCceEEEeehhhhhhhc------
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKAV--Q-VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEK------ 173 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~i--~-~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~------ 173 (421)
+|++.++...|+.+|+......... . ............+. +......||+.|++++ .
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al-----~~~~~~~ 156 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL-----AQLWEPD 156 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-----hcccccC
Confidence 9999887778999999764221100 0 00000000011110 1111234999999999 6
Q ss_pred cCCccceEEEEecCccHHHHHHH---HHHHH-HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRV---FRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrI---lrdl~-~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..|.++++||||+++|+.....+ ++++. ++|.|+ .+.+..+||++++|++|.+...+...++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 58999999999999999976554 46665 558777 6778899999999999999766654444
No 102
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.5e-24 Score=207.56 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=140.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 4677777777789999999999999 99999999999999999999998 4 6999999998642
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccc-----cc---cc-cccc----cccc---cccccccCceEEEeehhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV-----PI---YD-FKSS----SRIG---YRTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~-----p~---~~-~~~~----~~~~---~~~~~~~~qrVlIaegl~ 168 (421)
++.++|+||++.+++ .|+.+|+.+......... .. .+ +... .... ........||+.|++++
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral- 169 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL- 169 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH-
Confidence 245899999999888 899999986421100000 00 00 0000 0000 01111234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+.....+. +++. +|.|+ .+.+.++||++++|++|++...+...++
T Consensus 170 ----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 170 ----AVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred ----HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999999776555 4544 36776 6778899999999999999888776665
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=213.32 Aligned_cols=188 Identities=16% Similarity=0.230 Sum_probs=140.2
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. ..+|++|||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.+||.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4566666642 469999999999999 99999999999999999999999 99999999998752
Q ss_pred --CCccccccCCCC--CCccchHHHHHHhhhcccccc---cccccccccccccc----------ccccccCceEEEeehh
Q 014621 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY----------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 --~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl 167 (421)
++.++|+||+|. ++. .|+.+|+.+........ ............+. .......||+.|++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999973 444 59999998643211000 00000000111111 1111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++|||++++|+....++ +++++++ |.|+ ++.+.++||++++|.+|++...+...++.
T Consensus 161 -----~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 161 -----AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred -----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999977655 4666554 8887 77788999999999999999888776653
No 104
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=193.82 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=145.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee--cC-----------C
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN--DS-----------S 105 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~--~~-----------~ 105 (421)
.+++++.||...+|-||+|+.++|+ .+.+.||||||||||+|.|+-+. |.+|.+.+-|.. .+ |
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred EcccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 5678899999999999999999999 99999999999999999999998 999999997753 22 4
Q ss_pred CccccccCCCCCCccchHHHHHHhhh-c--cc---ccc---------ccccccccccccccccccccCceEEEeehhhhh
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E--GK---AVQ---------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~-~--~~---~i~---------~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L 170 (421)
+.+||+||...+|+.+|+.+|+.... + +. ... .+..++ .++..........|||.|+|++
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~--adr~plhlsggqqqrvaiaral--- 156 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPY--ADRYPLHLSGGQQQRVAIARAL--- 156 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccc--cccCceecccchhhhHHHHHHH---
Confidence 67899999999999999999986521 1 10 000 000000 0111111122345999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHH---HHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
...|.+++.||||++|||+...+ |++++.+.|.|- .+++++.+.+|.-|++|+|++.|..+.
T Consensus 157 --mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 157 --MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred --hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999997654 568888778775 788999999999999999999986543
No 105
>PTZ00301 uridine kinase; Provisional
Probab=99.91 E-value=4.1e-24 Score=201.53 Aligned_cols=175 Identities=31% Similarity=0.528 Sum_probs=152.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC-----CC-eeEEEECCeecCCCc------cccccCCCCCCccchHHHHHHhhhcc
Q 014621 66 IILVGVAGPSGAGKTVFTEKVLNFM-----PS-IAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEG 133 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-----p~-~G~I~~Dg~~~~~~~------ig~vfq~p~l~~~~tv~enl~~l~~~ 133 (421)
.++|||.|+||||||||++.|...+ |. ...+++|+|+..... -.+.|++|.+++...+.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4699999999999999998876442 33 457888999765422 13589999999999999999999988
Q ss_pred ccccccccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 014621 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (421)
Q Consensus 134 ~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~ 212 (421)
+.+..|.|++..+.+.. +...+.+.+|+|+||+|+++ +++++.+|++.+++++.|.+..|++.|++.++|+++.++++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 89999999999877764 44566778999999999986 68999999999999999999999999999999999999999
Q ss_pred HHhceEEEccCcEEeecCCcccEEEeCCC
Q 014621 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 213 ~~~d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
+|.+++.+++..+|.|++..||++|++..
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 99999999999999999999999996444
No 106
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=205.60 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=141.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC-------CC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------SR 106 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------~~ 106 (421)
.+++++.|++..+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+.. ++
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4667777877789999999999999 99999999999999999999998 4 5999999998653 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccc--ccccc---ccccccccc-------------cccccccCceEEEeehhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPIY---DFKSSSRIG-------------YRTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~i--~~p~~---~~~~~~~~~-------------~~~~~~~~qrVlIaegl~ 168 (421)
.++|+||++.++...|+.+|+......... ..... .....+..+ .+......||+.+++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral- 161 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL- 161 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH-
Confidence 689999999988889999999764211000 00000 000000001 01111234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+....++. +++. +|.|+ .+.+.++||++++|.+|++...+...++
T Consensus 162 ----~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 162 ----AFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred ----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 8999999999999999999876655 4443 36776 6778899999999999999887777665
No 107
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3e-24 Score=196.80 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=131.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig 109 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4678888888889999999999999 99999999999999999999999 89999999998642 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
|++|++.+++..++.+|+... .+++ ..||+.|++++ ..+|.+.++|||++++|
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-----------------lS~G-----~~qr~~la~al-----~~~p~llilDEP~~~LD 132 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-----------------LSGG-----QQQRVALARAL-----AMDPDVLLLDEPTSALD 132 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------CCHH-----HHHHHHHHHHH-----HCCCCEEEEeCCcccCC
Confidence 999999988888999887542 2232 24789999999 99999999999999999
Q ss_pred HHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 014621 190 FDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 190 ~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+.....+ +++++++ |.|+ .+.+..+||+++.|.+|
T Consensus 133 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 133 PITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9976655 4666665 7777 67788899999999876
No 108
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=2.3e-24 Score=208.51 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=143.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 4678888888899999999999999 99999999999999999999999 89999999998653 2358999
Q ss_pred cCCCCCCccchHHHHHHhhhcc-cc---ccccc---ccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 112 FDDPRLTDYDTLLENIRGLKEG-KA---VQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~-~~---i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|++.++...|+.+|+.+.... .. ..... .........+. +......||+.|++++ ..+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~ 155 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL-----AQE 155 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 9999877788999999763210 00 00000 00000111110 1111234899999999 999
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.+.++|||++++|+.....+ +++++++|.|+ ++.+.++||++++|.+|++...+...++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999876654 46666568777 7888999999999999999877665554
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.7e-24 Score=207.49 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=141.4
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. +..++|
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5677777777889999999999999 99999999999999999999998 89999999998753 124778
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-------cc-ccc----------cccccccccccc---------ccccccCceEEE
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK-------AV-QVP----------IYDFKSSSRIGY---------RTLEVPSSRIVI 163 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-------~i-~~p----------~~~~~~~~~~~~---------~~~~~~~qrVlI 163 (421)
+||++.+++..|+.+|+....... .. ..+ .......+..+. +......||+.|
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 999999999899999998642100 00 000 000000011111 011122499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++++ ..+|.++++|||++++|+...+.+ +++++++ |.|+ ++.+..+||+++++.+|++...+...
T Consensus 165 a~al-----~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 165 ARCM-----VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHH-----hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 9999 999999999999999999876655 4555554 7787 77888999999999999997666544
Q ss_pred cE
Q 014621 234 HI 235 (421)
Q Consensus 234 Di 235 (421)
++
T Consensus 240 ~~ 241 (255)
T PRK11300 240 EI 241 (255)
T ss_pred HH
Confidence 43
No 110
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=217.65 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=140.2
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCccc
Q 014621 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig 109 (421)
++++.|+.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 66777776543 8999999999 99999999999999999999999 99999999997642 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc--ccccccc-ccccccccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV--PIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~---i~~--p~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
|+||++.+++..|+.+|+.+...... +.. ....... ..+...+......||+.|++++ ..+|.++++||
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL-----~~~p~llLLDE 154 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL-----LTAPELLLMDE 154 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEEEEcC
Confidence 99999999999999999986432110 000 0000000 0000001111234999999999 99999999999
Q ss_pred EecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 184 VTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 184 pts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|+++||+.....++ +++.++ |.|+ ++.+..+||++++|.+|++...++..++
T Consensus 155 Pts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999998766544 566555 7777 6778899999999999999988877776
No 111
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=212.78 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=140.2
Q ss_pred eeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
.+++++.|+. ..+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4566666642 469999999999999 99999999999999999999999 99999999998763 2468
Q ss_pred ccccCCCC-CCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~-l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||+|. ++...|+.+|+.+......... ........+..+. +......||+.|++++ ..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral-----~~~ 158 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV-----AMR 158 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999984 6777899999986432110000 0000000011110 1111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++||||++||+...+.++ ++++++ |.|+ ++.+ .+||+++++++|++...++..++.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999998766554 666654 8887 5666 479999999999999888776663
No 112
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=209.16 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=143.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 9 ~i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 9 RGEQLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 35778888888889999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-c-c-cccc----ccccccccccc---------ccccccCceEEEeehhhhhhhcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK-A-V-QVPI----YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-~-i-~~p~----~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l 174 (421)
+||++.+++..++.+|+....... . . ..+. .-.......+. .......||+.|++++ ..
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral-----~~ 160 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL-----AQ 160 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH-----hc
Confidence 999999888889999997632110 0 0 0000 00000011110 1111134999999999 89
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|.++++|||++++|+.....+. +++.++ |.|+ .+.+..+||+++.|++|++...+..+++
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999766554 565553 7777 7788999999999999999877765554
No 113
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.7e-24 Score=207.83 Aligned_cols=188 Identities=10% Similarity=0.069 Sum_probs=141.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 5677888888889999999999999 99999999999999999999999 89999999998642 2458999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-------ccccccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGK-------AVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~-------~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
||++.+++..++.+|+.+..... .......-.......+. +......||+.|++++ ..+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~ 156 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL-----AQD 156 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 99998888889999987632100 00000000000000110 1111234899999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++|||++++|+.....+. +++.++|.|+ .+.+.++||+++++++|++...+...++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999766554 5555568787 7788899999999999999776655444
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=209.40 Aligned_cols=189 Identities=13% Similarity=0.034 Sum_probs=143.2
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
-.+++++.|++..+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 13 ~i~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred EEeeEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 46678888887889999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc-c----ccccccc--ccccccccc---------ccccccCceEEEeehhhhhhhcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK-A----VQVPIYD--FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~-~----i~~p~~~--~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l 174 (421)
++|++.+++..++.+|+....... . ......+ .......+. +......||+.+++++ ..
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~ 164 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV-----AQ 164 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH-----hc
Confidence 999998888889999997632100 0 0000000 000011110 1111234899999999 99
Q ss_pred CCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|.++++|||++++|+...+.+ ++++.++ |.|+ ++.+.++||++++|.+|++...+...++
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999986654 4666554 7777 7788899999999999999876655554
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=2.9e-24 Score=205.22 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=139.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. .+.++|++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 14689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.++...++.+|+.......... ............+. +......||+.|++++ ...|.+.+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral-----~~~p~lll 155 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARAL-----LHRPALLL 155 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9998888899999997643211000 00000000011110 1111234999999999 89999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|||++++|+.....+. +++.+ +|.|+ .+.+.. ||++++|++|++...+...++
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999776554 55553 47777 555654 999999999999776654443
No 116
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2e-24 Score=202.48 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=132.5
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce
Confidence 3577888876 789999999999999 99999999999999999999999 89999999998653 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhccccc-----ccccc----ccccccccc---cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPR-LTDYDTLLENIRGLKEGKAV-----QVPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~-l~~~~tv~enl~~l~~~~~i-----~~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++. .+...|+.+|+......... ..... .+....... .+......||+.|++++ ..+|
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral-----~~~p 153 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL-----AMDP 153 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH-----hcCC
Confidence 9999985 35567999998763211000 00000 000000000 01111234999999999 8999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
.++++||||+++|+.....+. +++.++|.|+ .+.+..+||++++|.+|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999776554 5555567777 677889999999998773
No 117
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.90 E-value=6.4e-24 Score=201.05 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=141.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---CCccccccCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---~~~ig~vfq~p 115 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.... .+.++++||++
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4678888888889999999999999 99999999999999999999999 89999999998653 24689999999
Q ss_pred CCCccchHHHHHHhhhcccccccccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 116 RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
.+++..++.+|+............. .....+..+. .......+|+.+++++ ..+|.++++|||++
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-----~~~p~llllDEP~~ 153 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSR-IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL-----LNHPKLLILDEPTN 153 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHH-HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH-----hcCCCEEEECCCcc
Confidence 9888889999997532110000000 0000011110 1111234899999999 89999999999999
Q ss_pred CccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCc
Q 014621 187 GVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 187 ~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~ 232 (421)
++|+...+.+. +++.++|.|+ .+.+.++||+++.+.+|.+...++.
T Consensus 154 ~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 154 GLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecCh
Confidence 99999766554 5665567777 7778899999999999999776643
No 118
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.1e-24 Score=205.38 Aligned_cols=184 Identities=16% Similarity=0.129 Sum_probs=139.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq~p~ 116 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ...++|++|++.
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 4677888877889999999999999 99999999999999999999999 89999999998763 245899999999
Q ss_pred CCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 117 LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
+++..|+.+|+........... ...-.......+. .......||+.+++++ ...|.++++|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral-----~~~p~lllLDEP 155 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL-----AANPQLLLLDEP 155 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 9988999999976421100000 0000000011110 1111234899999999 899999999999
Q ss_pred ecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEcc--CcEEeecCC
Q 014621 185 TGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMY--KAFIEPDLQ 231 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~--~g~I~p~~~ 231 (421)
|++||+...+.+. +++.+ +|.|+ .+.+..+||++++|. +|++.....
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999776554 55533 47777 778899999999998 588876543
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.5e-24 Score=204.71 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=138.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.+||.+..
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 4567777777789999999999999 99999999999999999999985 37899999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----cccc-------cccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----FKSS-------SRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~~~~-------~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++ .|+.+|+.+....... ...... +... ............||+.|++++
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 246899999998887 5999999764211100 000000 0000 000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. +++. +|.|+ .+.+.++||+++.+++|.+...+...++
T Consensus 165 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 165 -----AVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998766554 5553 36776 6778899999999999999877665544
No 120
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-24 Score=211.09 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=142.2
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCcc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~i 108 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 567777774 5679999999999999 99999999999999999999999 89999999998752 2458
Q ss_pred ccccCCCC-CCccchHHHHHHhhhcccccccc---ccccccccccc---------cccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~-l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||++. .+...|+.+|+.+.......... .......+..+ ........||+.|++++ ..+
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL-----~~~ 159 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL-----VME 159 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999984 33457999999764221100000 00000001111 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++|||++++|+.....+ ++++.++ |.|+ ++.+.++||++++|++|++...+...++.
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999976654 5666655 8887 77788999999999999999888777763
No 121
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=5.4e-24 Score=203.67 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=141.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~--------~~~i 108 (421)
.+++++.|++..+++++||++++|+ +++|+|+||||||||+++|+|+ + |++|.|.++|.+.. +..+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4678888888889999999999999 9999999999999999999999 4 78999999998653 1237
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc-------ccc-----cc------ccccc--cccccc-ccccccCceEEEeehh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKA-------VQV-----PI------YDFKS--SSRIGY-RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~-------i~~-----p~------~~~~~--~~~~~~-~~~~~~~qrVlIaegl 167 (421)
+|++|++.+++..++.+++........ ... .. ..... ...... .......||+.|++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 899999999999999999876421100 000 00 00000 000000 0111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+.....+. +++.++|.|+ .+.+..+ ||+++.|++|++...+...++
T Consensus 160 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 160 -----LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred -----hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 8999999999999999998766554 5665567777 6777888 899999999999876655433
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.7e-24 Score=211.79 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=140.2
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. +.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+..
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4677777753 569999999999999 99999999999999999999999 99999999998652
Q ss_pred --CCccccccCCCC-CCccchHHHHHHhhhcccccc---cccccccccccccc----------ccccccCceEEEeehhh
Q 014621 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 105 --~~~ig~vfq~p~-l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~ 168 (421)
++.++|+||++. .+...|+.+|+.+........ ............+. .......||+.|++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral- 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM- 160 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH-
Confidence 235899999973 233579999997642211000 00000000011111 1111234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||+++|+...+.+ +++++++|.|+ ++.+.++||+++++++|++...+...++
T Consensus 161 ----~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 161 ----AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred ----HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999876554 46665568887 7888999999999999999888876665
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=4.8e-24 Score=201.93 Aligned_cols=182 Identities=19% Similarity=0.253 Sum_probs=135.4
Q ss_pred eeeeEEEeCcE----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+.. .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 46777777654 79999999999999 99999999999999999999999 89999999998643
Q ss_pred CCccccccCCC--CCCccchHHHHHHhhhccc--ccc-ccccc--ccccccccc----------ccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDP--RLTDYDTLLENIRGLKEGK--AVQ-VPIYD--FKSSSRIGY----------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~--~i~-~p~~~--~~~~~~~~~----------~~~~~~~qrVlIaegl 167 (421)
++.++|++|++ .+++..|+.+|+.+..... ... ..... .......+. .......||+.|++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 24689999998 4566789999997532110 000 00000 000011110 1111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
..+|.++++|||++++|+...+.+. +++.++ |.|+ .+.+.++||+++++++|++...
T Consensus 161 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 161 -----ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred -----hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 8899999999999999998766554 555554 7887 7778889999999999998643
No 124
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.1e-24 Score=214.59 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=141.8
Q ss_pred eeeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+. ..+|++|||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 23 RVKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred EEEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 35677777753 469999999999999 99999999999999999999999 99999999987532
Q ss_pred ---------------CCccccccCCCC--CCccchHHHHHHhhhcccc-----ccccccc----ccc----ccccccccc
Q 014621 105 ---------------SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKA-----VQVPIYD----FKS----SSRIGYRTL 154 (421)
Q Consensus 105 ---------------~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~~-----i~~p~~~----~~~----~~~~~~~~~ 154 (421)
++.++|+||+|. +++ .|+.+|+.+...... ....... +.. ..+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 245899999983 554 599999976432110 0000000 000 000000111
Q ss_pred cccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 155 ~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
....||+.|++++ ..+|.++++||||++||+...+.++ ++++++|.|+ ++.+.++||++++|.+|.
T Consensus 179 gGqkqRvaiAraL-----~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 179 GGQKRRVAIAGIL-----AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred HHHHHHHHHHHHH-----HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 1234999999999 9999999999999999999876655 5555668887 777889999999999999
Q ss_pred EeecCCcccEE
Q 014621 226 IEPDLQTAHIK 236 (421)
Q Consensus 226 I~p~~~~aDii 236 (421)
+...+...++.
T Consensus 254 i~~~g~~~~~~ 264 (320)
T PRK13631 254 ILKTGTPYEIF 264 (320)
T ss_pred EEEeCCHHHHh
Confidence 99988887763
No 125
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-24 Score=209.51 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=140.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig 109 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 4678888877789999999999999 99999999999999999999999 89999999998752 23589
Q ss_pred cccCCCCC-CccchHHHHHHhhhccccccc-cccc--cccccccc---------cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPRL-TDYDTLLENIRGLKEGKAVQV-PIYD--FKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~l-~~~~tv~enl~~l~~~~~i~~-p~~~--~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++.. +...++.+|+.+......... .... .......+ ........||+.|++++ ..+|
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL-----~~~p 155 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL-----VLQA 155 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH-----HcCC
Confidence 99999863 334568888875321110000 0000 00000111 01111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++||||+++|+.....+ +++++++|.|+ .+.+..+||++++|.+|++...+...++
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999976654 45665568777 7778899999999999999888876665
No 126
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.9e-24 Score=200.70 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=134.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+... .++||++.+|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 467777777654 39999999999 99999999999999999999999 89999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccc-ccc-c-ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGK-AVQ-V-PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~-~i~-~-p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..|+.+|+....... ... . ........+..+. .......||+.|++++ ..+|.++++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al-----~~~p~llll 152 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL-----VRDKPVLLL 152 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998899999997542210 000 0 0000000011110 1111234999999999 899999999
Q ss_pred EEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
|||++++|+.....+. +++.+ +|.|+ .+.+.++||++++|++|.+...
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999766554 55554 48887 7778899999999999998653
No 127
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6e-24 Score=229.98 Aligned_cols=189 Identities=18% Similarity=0.163 Sum_probs=143.2
Q ss_pred eeeeEEEeC-----------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---
Q 014621 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--- 104 (421)
Q Consensus 40 ~~~ls~~~g-----------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--- 104 (421)
.+++++.|+ ...++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 346666664 2579999999999999 99999999999999999999999 89999999998652
Q ss_pred -------CCccccccCCC--CCCccchHHHHHHhhhc--cc--ccccccccccccccccc----------ccccccCceE
Q 014621 105 -------SRIIDGNFDDP--RLTDYDTLLENIRGLKE--GK--AVQVPIYDFKSSSRIGY----------RTLEVPSSRI 161 (421)
Q Consensus 105 -------~~~ig~vfq~p--~l~~~~tv~enl~~l~~--~~--~i~~p~~~~~~~~~~~~----------~~~~~~~qrV 161 (421)
++.++|+||++ .+++..++.+++.+... +. ...............+. +......|||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 24689999998 47788899999976421 10 00000000000111111 1111234999
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
.||+++ ...|.++++||||++||+.....++ ++++++ |.|+ ++.+.++||++++|++|++...++
T Consensus 473 ~iAraL-----~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 473 CIARAL-----ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999 9999999999999999999776554 666554 8887 788899999999999999998888
Q ss_pred cccEE
Q 014621 232 TAHIK 236 (421)
Q Consensus 232 ~aDii 236 (421)
..+++
T Consensus 548 ~~~i~ 552 (623)
T PRK10261 548 RRAVF 552 (623)
T ss_pred HHHHh
Confidence 87773
No 128
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.90 E-value=4e-24 Score=207.46 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=140.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC-----------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~----------- 104 (421)
.+++++.|++..+++++||++.+|+ +++|+|+||||||||+++|+|++ |+ +|.|.++|....
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 4567777777889999999999999 99999999999999999999998 65 499999998652
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccc-cc-----c--ccc---ccccccccccc---------ccccccCceEEE
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AV-----Q--VPI---YDFKSSSRIGY---------RTLEVPSSRIVI 163 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~-~i-----~--~p~---~~~~~~~~~~~---------~~~~~~~qrVlI 163 (421)
++.++|+||++.+++..|+.+|+....... .. . .+. .........+. .......||+.|
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 235899999999998899999997542110 00 0 000 00000001110 111123499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++++ ..+|.++++|||++++|+...+.+. +++.+ +|.|+ .+.+.++||+++++++|++...+..+
T Consensus 164 aral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 164 ARAL-----MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHH-----hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999 8999999999999999999766554 56654 37887 67788999999999999998777655
Q ss_pred c
Q 014621 234 H 234 (421)
Q Consensus 234 D 234 (421)
+
T Consensus 239 ~ 239 (262)
T PRK09984 239 Q 239 (262)
T ss_pred H
Confidence 5
No 129
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.90 E-value=9.8e-25 Score=236.93 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=151.6
Q ss_pred CeeeeeeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------C
Q 014621 36 IVPIEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------S 105 (421)
Q Consensus 36 ~~~v~~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~ 105 (421)
.+.-.++++|.|+.. .+|+|+||+|++|| .+||+|+||||||||+|.|.|+. |+.|.|.+||+++. |
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 345678999999755 79999999999999 99999999999999999999999 99999999999865 6
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccc---c--------------ccc-ccccccccccccccccccCceEEEeehh
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA---V--------------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i--------------~~p-~~~~~~~~~~~~~~~~~~~qrVlIaegl 167 (421)
+.+||+.|++.+|. .|+.||+........ + ..| -|+....+. |.......+||++|||++
T Consensus 547 ~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~-G~~LSGGQrQrlalARaL 624 (709)
T COG2274 547 RQVGYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG-GANLSGGQRQRLALARAL 624 (709)
T ss_pred hheeEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHh
Confidence 78999999998875 689999987532211 0 011 011111110 001112235999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHHHHHHHc--CCCH-----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~--G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||+|+++|+.+.+.+...+.+- |+|. ..-.-+.||++++|++|+|.+++.+.++.
T Consensus 625 -----l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 625 -----LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred -----ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 9999999999999999999999999888764 6877 23344679999999999999999988875
No 130
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.90 E-value=8.2e-24 Score=205.81 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=140.0
Q ss_pred eeeeEEEeC---------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----
Q 014621 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (421)
Q Consensus 40 ~~~ls~~~g---------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----- 104 (421)
.+++++.|+ .+.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+..
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 345666663 4689999999999999 99999999999999999999999 99999999998653
Q ss_pred -----CCccccccCCCC--CCccchHHHHHHhhhccc-ccc---cccccccccccccc----------ccccccCceEEE
Q 014621 105 -----SRIIDGNFDDPR--LTDYDTLLENIRGLKEGK-AVQ---VPIYDFKSSSRIGY----------RTLEVPSSRIVI 163 (421)
Q Consensus 105 -----~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~-~i~---~p~~~~~~~~~~~~----------~~~~~~~qrVlI 163 (421)
++.++|++|++. +++..++.+|+....... ... .........+..+. +......||+.|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 235899999973 556789999986532110 000 00000000011110 111123499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++++ ...|.++++|||+++||+.....+ ++++.++ |.|+ .+.+..+||+++++++|.+...+...
T Consensus 162 aral-----~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 162 ARAL-----AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999 899999999999999999876544 4666554 8887 77888999999999999999888777
Q ss_pred cEE
Q 014621 234 HIK 236 (421)
Q Consensus 234 Dii 236 (421)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
No 131
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=8.5e-25 Score=198.16 Aligned_cols=218 Identities=15% Similarity=0.210 Sum_probs=161.0
Q ss_pred eeeecCcceecCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014621 25 LVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 25 l~~~~~~~~y~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
|++++++|.|.... =-|....+.|++.|||++++|+ .+||+|.||||||||+|+|+|.+ |++|+|.+||..+
T Consensus 5 LeV~nLsKtF~~~~----~lf~r~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L 77 (267)
T COG4167 5 LEVRNLSKTFRYRT----GLFRRQTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77 (267)
T ss_pred hhhhhhhhhhhhhh----hhhhhhhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence 45666666653211 1134456789999999999999 99999999999999999999999 9999999999864
Q ss_pred C-------CCccccccCCCCC--CccchHHHHHHhhhcc-ccccc---ccccccccccccc--c--------cccccCce
Q 014621 104 S-------SRIIDGNFDDPRL--TDYDTLLENIRGLKEG-KAVQV---PIYDFKSSSRIGY--R--------TLEVPSSR 160 (421)
Q Consensus 104 ~-------~~~ig~vfq~p~l--~~~~tv~enl~~l~~~-~~i~~---p~~~~~~~~~~~~--~--------~~~~~~qr 160 (421)
. .+.|.|+||+|+. .+...+-.-+..+... ..... ...-+.....+|. + .....+||
T Consensus 78 ~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQR 157 (267)
T COG4167 78 HFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR 157 (267)
T ss_pred cccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHH
Confidence 3 3579999999973 4444445545443321 11000 0011111222221 0 11123499
Q ss_pred EEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 161 VlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
|++|||+ .++|.+.+.||.-++||.....+++ -++.++ |.+- ..++..++|.|++|++|.+++.|
T Consensus 158 VaLARAL-----IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 158 VALARAL-----ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHHHHH-----hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999 9999999999999999988655554 566665 7765 78999999999999999999999
Q ss_pred CcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHHHhcc
Q 014621 231 QTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (421)
Q Consensus 231 ~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~~ 271 (421)
.++++ +.+| .+++|+..|.+.+.+
T Consensus 233 ~t~~v-----------~a~P------~~~~TkRlieShFg~ 256 (267)
T COG4167 233 STADV-----------LASP------LHELTKRLIESHFGE 256 (267)
T ss_pred Chhhh-----------hcCC------ccHHHHHHHHHHhcc
Confidence 99998 6778 999999999988876
No 132
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.3e-24 Score=205.59 Aligned_cols=186 Identities=15% Similarity=0.118 Sum_probs=139.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 5667777777779999999999999 99999999999999999999998 5 4899999997642
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------ccccccc----cc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYDF----KS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~~----~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.++. .|+.+|+.+....... ....... .. .............||+.|++++
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 345899999998885 8999999764321100 0000000 00 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. ++++ ++.|+ .+.+.++||++++|.+|++...+...++
T Consensus 166 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 166 -----AIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred -----HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999999766554 5554 36666 6778899999999999999888877666
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.4e-24 Score=207.58 Aligned_cols=189 Identities=16% Similarity=0.223 Sum_probs=141.4
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Ccccc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~ 110 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|+.... +.++|
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 467777874 4569999999999999 99999999999999999999999 999999999987532 35899
Q ss_pred ccCCCC-CCccchHHHHHHhhhccccccc-----ccc------cccc-ccccccccccccCceEEEeehhhhhhhccCCc
Q 014621 111 NFDDPR-LTDYDTLLENIRGLKEGKAVQV-----PIY------DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 111 vfq~p~-l~~~~tv~enl~~l~~~~~i~~-----p~~------~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
+||++. .+...|+.+|+........... ... .... ..+..........||+.|++++ ..+|.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL-----~~~p~ 157 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI-----AMEPQ 157 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH-----HcCCC
Confidence 999984 2335799999975432111000 000 0000 0000001111234899999999 99999
Q ss_pred cceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 178 IDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++++||||+++|+.....+ +++++++ |.|+ ++.+.++||++++|++|++...++..+++
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999876554 5666655 8887 77888999999999999999888777664
No 134
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=5.1e-24 Score=215.84 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=141.0
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCcc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~i 108 (421)
-++++.|+.+.+ ++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 3 ~~l~~~~~~~~~--~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 3 ARFSKRLGDFSL--DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEEECCEEE--EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 367788877654 8999999999 99999999999999999999999 89999999998642 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc-ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCcc
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~-p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
+|+||++.+++..|+.+|+.+......... ........+..+. +......||+.|++++ ..+|.+
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL-----~~~p~l 152 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRAL-----LSSPRL 152 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-----HcCCCE
Confidence 999999999999999999986432110000 0000000011110 1111234999999999 999999
Q ss_pred ceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 179 DLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++|||+++||+.....+ ++++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999976655 4566555 7777 6778899999999999999888876665
No 135
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=4.3e-24 Score=194.91 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=126.3
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. ..+++++|+++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 3567777754 569999999999999 99999999999999999999999 89999999998653 34689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
|++|++.+++ .|+.+|+ .+++ ..||+.|++++ ...|.++++|||++++|
T Consensus 80 ~~~q~~~~~~-~tv~~~l--------------------LS~G-----~~qrv~la~al-----~~~p~~lllDEPt~~LD 128 (173)
T cd03246 80 YLPQDDELFS-GSIAENI--------------------LSGG-----QRQRLGLARAL-----YGNPRILVLDEPNSHLD 128 (173)
T ss_pred EECCCCcccc-CcHHHHC--------------------cCHH-----HHHHHHHHHHH-----hcCCCEEEEECCccccC
Confidence 9999998877 4898887 2232 24789999999 99999999999999999
Q ss_pred HHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 190 FDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 190 ~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
+.....+ +++++++|.|+ .+.+ .+||++++|++|++
T Consensus 129 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 129 VEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 9876654 46666568777 5556 47999999998853
No 136
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=6e-24 Score=224.94 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=144.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC--------Ccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~--------~~ig~ 110 (421)
.+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+... +.++|
T Consensus 14 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 5678888888889999999999999 99999999999999999999999 899999999986531 35899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc-ccccc------cccccc-cccccccccccCceEEEeehhhhhhhccCCccceEE
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA-VQVPI------YDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~-i~~p~------~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~D 182 (421)
++|++.+++..|+.+|+.+...... ..... ...... .+...+......||+.|++++ ..+|.++++|
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL-----~~~p~lllLD 165 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL-----MRDSRILILD 165 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEE
Confidence 9999999999999999976432110 00000 000000 000001111234999999999 8999999999
Q ss_pred EEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 183 SVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 183 Epts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++||+.....+ +++++++|.|+ .+.+.++||++++|++|++...+...++
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999876655 46666668887 7788899999999999999877766554
No 137
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.4e-24 Score=201.68 Aligned_cols=182 Identities=15% Similarity=0.172 Sum_probs=133.9
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 4566666643 579999999999999 99999999999999999999999 89999999998653
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhc--ccc-cccccccccccccccc---------ccccccCceEEEeehhhhhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA-VQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~-i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|++|++.+++..|+.+|+.+... +.. ......-....+..+. +......||+.|++++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al---- 160 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL---- 160 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH----
Confidence 1458999999999988899999976321 100 0000000000011110 1111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
...|.++++|||++++|+.....+. +++++ +|.|+ .+.+..+ +++++|++|++...+
T Consensus 161 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 161 -VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAEL 227 (233)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEe
Confidence 8999999999999999999766554 66654 48877 6666665 699999999987554
No 138
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.5e-24 Score=205.21 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=141.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |+ +|.|.+||.++.
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 5678888877889999999999999 99999999999999999999998 63 999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc--ccccc--c-cccccccc-------------cccccccCceEEEeeh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QVPIY--D-FKSSSRIG-------------YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i--~~p~~--~-~~~~~~~~-------------~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++..|+.+|+......... ..... . ....+..+ ........||+.|+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 24689999999999889999999764211000 00000 0 00000000 0111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+.++||++++|.+|++...++..++
T Consensus 164 l-----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 164 L-----AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred H-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8999999999999999999776655 44433 5676 7778899999999999999887766554
No 139
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.2e-23 Score=196.95 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=134.2
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecC------C
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS------S 105 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~Dg~~~~------~ 105 (421)
.++++|.|+ ++.+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. +
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 456667663 5789999999999999 99999999999999999999997 36999999998653 3
Q ss_pred CccccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+.++|++|++.+++..|+.+|+.+..... .+......++ ...||+.|++++ ..+|.++++|||+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~-----Ge~qrl~laral-----~~~p~llllDEPt 146 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISG-----GERKRVSIAEAL-----VSRASVLCWDNST 146 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCH-----HHHHHHHHHHHH-----hhCCCEEEEcCCC
Confidence 46899999998888899999997643211 1111111222 235899999999 8999999999999
Q ss_pred cCccHHHHHHHH---HHHHHc-CCCH-------HHHHHHHhceEEEccCcEEeec
Q 014621 186 GGVHFDLVKRVF---RDIQRV-GQEP-------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~-G~ti-------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
+++|+...+.+. +++.++ +.++ .+.+.++||++++|++|++...
T Consensus 147 ~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 999999766554 555554 5553 4677889999999999998643
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.90 E-value=5.6e-24 Score=200.89 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=132.6
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4567777753 579999999999999 99999999999999999999999 89999999998653
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccccc---cccccccccccc---------cccccccCceEEEeehhhhhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|++|++.+++..++.+|+........... ...........+ ........||+.|++++
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral---- 156 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL---- 156 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH----
Confidence 1458999999999988999999976321000000 000000000011 01111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEe
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~ 227 (421)
..+|.++++||||+++|+.....+. +++.++ |.|+ .+.+.. +|++++|++|++.
T Consensus 157 -~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 -VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred -hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999998766554 555543 7777 566654 7999999999874
No 141
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.5e-24 Score=202.44 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=143.4
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.+.+++++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.+.. ++.+++++|
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 5678888888889999999999999 99999999999999999999999 89999999998653 356899999
Q ss_pred CCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..++.+|+.+........ .........+..+. .......||+.|++++ ..+|.+.++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral-----~~~p~llll 154 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL-----VNEPKVLLL 154 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998889999987532110000 00000000011110 1111234899999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+.....+. ++++++ |.|+ .+.+.++||+++.+++|++...+...++
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999998766554 666554 8887 6778899999999999999777654444
No 142
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=5.4e-24 Score=224.77 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=143.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|++..+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4567777777789999999999999 99999999999999999999999 99999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc----ccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK----AVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~----~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l 174 (421)
+||++.+++..|+.+|+.+..... ..... .......+..+. +......||+.|++++ ..
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~ 158 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL-----SF 158 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH-----hc
Confidence 999999999999999997642110 00000 000000111111 1111234999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|.++++||||++||+.....+ +++++++|.|+ .+.+.++||+++++++|++...+...++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999876655 46666668777 7788999999999999999876655543
No 143
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.3e-24 Score=208.41 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=141.1
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCcc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~i 108 (421)
.+++++.|+ ...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 567888885 4679999999999999 99999999999999999999999 89999999998752 2458
Q ss_pred ccccCCCC-CCccchHHHHHHhhhcccccc---ccccccccccccc---------cccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~-l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||++. .+...++.+|+.+........ .........+..+ .+......||+.|++++ ..+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral-----~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL-----AMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH-----hcC
Confidence 99999974 333469999997532110000 0000000001111 01111234899999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++||||+++|+.....+. ++++++|.|+ .+.+.++||++++|++|.+...++..++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999776554 5665568887 77788999999999999999888777663
No 144
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.90 E-value=1.3e-23 Score=203.55 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=138.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee-----cC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~-----~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.+ ..
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 4567777766789999999999999 99999999999999999999999 899999999976 32
Q ss_pred --CCccccccCCCC--CCccchHHHHHHhhhc--cc----ccccc------cccccc--ccccccccccccCceEEEeeh
Q 014621 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK----AVQVP------IYDFKS--SSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 --~~~ig~vfq~p~--l~~~~tv~enl~~l~~--~~----~i~~p------~~~~~~--~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++. ++...++.+|+..... +. ..... ...... ......+......||+.|+++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 235899999984 4555677777754211 10 00000 000000 000000111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ...|.++++|||++++|+...+.+. ++++++ |.|+ .+.+.++||+++.+++|++...+...++
T Consensus 166 l-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 166 L-----VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred H-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9 8999999999999999999876654 555544 7777 7788899999999999999888776665
No 145
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=195.01 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=134.1
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC---CCccc
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I~~Dg~~~~---~~~ig 109 (421)
.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|+. |+.|.|.+||.+.. ++.++
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5667777753 679999999999999 99999999999999999999974 68999999998752 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
|++|++.+++..|+.+|+.+..... ..+++ ..||+.+++++ ..+|.++++|||++++|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~------------~LSgG-----e~qrv~la~al-----~~~p~vlllDEP~~~LD 140 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALLR------------GLSVE-----QRKRLTIGVEL-----AAKPSILFLDEPTSGLD 140 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHHh------------cCCHH-----HhHHHHHHHHH-----hcCCcEEEEeCCCcCCC
Confidence 9999999998899999998642100 22332 34899999999 89999999999999999
Q ss_pred HHHHHHHH---HHHHHcCCCH------HH-HHHHHhceEEEccC-cEEeec
Q 014621 190 FDLVKRVF---RDIQRVGQEP------EE-IIHQISETVYPMYK-AFIEPD 229 (421)
Q Consensus 190 ~~~~rrIl---rdl~~~G~ti------~~-vi~~~~d~V~~m~~-g~I~p~ 229 (421)
+...+.+. +++.++|.|+ .+ .+..+||+++.|++ |++...
T Consensus 141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 98766554 5555567777 33 46789999999998 888653
No 146
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.2e-24 Score=204.83 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=141.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecC-------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~Dg~~~~-------~~~i 108 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678888887889999999999999 99999999999999999999996 47999999998753 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccc-c-cc-c--cccccccccc-------------cccccccCceEEEeehhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAV-Q-VP-I--YDFKSSSRIG-------------YRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i-~-~p-~--~~~~~~~~~~-------------~~~~~~~~qrVlIaegl~~L 170 (421)
+|+||++.+++ .|+.+|+.+....... . .. . .-....+..+ ........||+.+++++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral--- 157 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL--- 157 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH---
Confidence 99999999987 6999999764211000 0 00 0 0000001101 01112234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+.....+.+-+.+ +|.|+ .+.+.++||+++++++|++...+...++
T Consensus 158 --~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 158 --AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred --hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 999999999999999999987766544433 47776 7778899999999999999887766665
No 147
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1e-23 Score=215.19 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=146.9
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig 109 (421)
..++++..|+...|+++|||++.+|| |.+|.|.||||||||+++|.|++ |++|+|.+||+... +..||
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 35677888899999999999999999 99999999999999999999999 99999999999754 34699
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc-----------cccccc--cccccccccccccCceEEEeehhhhhhhc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----------PIYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~---i~~-----------p~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
|++|||.+++..|+.|||........ ... ..|.+. +...+. .......|||=|+.++ .
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-dLsVG~qQRVEIlKaL-----y 156 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-DLSVGEQQRVEILKAL-----Y 156 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-cCCcchhHHHHHHHHH-----h
Confidence 99999999999999999987543211 000 011111 111111 1122245999999999 7
Q ss_pred cCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
..+.++++||||+-|-|..+.+++ +.+.+.|.|+ .+.+.++|||+-++..|++..+.
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 899999999999999999877654 8888899999 78889999999999999985443
No 148
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=201.59 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=140.6
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ++|.|.+||.+..
T Consensus 6 ~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 6 ESKNLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 35677777777789999999999999 99999999999999999999997 4 6899999998753
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc-cc---cccccccccccc-------------cccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QV---PIYDFKSSSRIG-------------YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-~~---p~~~~~~~~~~~-------------~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++ .|+.+|+.+....... .. ........+..+ ........||+.|+++
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 245899999999887 8999999764321100 00 000000000100 0111123489999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.+.++|||++++|+...+.+. +++.+ +.|+ .+.+.++||+++++++|.+...+...++
T Consensus 162 l-----~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 162 I-----AVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred H-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9 8899999999999999999776554 55544 5666 7788899999999999999887776665
No 149
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=221.88 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=143.3
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~v 111 (421)
+++++.|++..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578888888889999999999999 99999999999999999999999 89999999998653 2468999
Q ss_pred cCCCCCCccchHHHHHHhhhccc-c--ccccc-cc--ccccccccc---------ccccccCceEEEeehhhhhhhccCC
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGK-A--VQVPI-YD--FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~-~--i~~p~-~~--~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
+|++.+++..|+.+|+.+..... . ..... .. .......+. +......||+.|++++ ..+|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al-----~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF-----SYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH-----HhCC
Confidence 99999888899999997642110 0 00000 00 000000110 1111234999999999 8999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
.++++||||+++|+...+++ ++++.++|.|+ .+.+.++||++++|++|++...++..+
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 99999999999999977665 56666678887 778889999999999999987665544
No 150
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.4e-24 Score=198.48 Aligned_cols=180 Identities=17% Similarity=0.101 Sum_probs=135.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++++| +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 467888888888999999999994 79999999999999999999999 89999999997653 35689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccc---ccccccccccccc---------cccccccCceEEEeehhhhhhhccCCccce
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
|++.+++..++.+|+.+........ ....-.......+ .+......||+.|++++ ..+|.+++
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~lll 153 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL-----VGDPSILI 153 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 9999998889999997632110000 0000000000111 01111234899999999 99999999
Q ss_pred EEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 181 RVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
+||||+++|+.....+. +++++ +.|+ .+.+.++||++++|++|.+...
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999776655 55543 5666 6778899999999999988643
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=204.14 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=141.6
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC-------
Q 014621 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS------- 104 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~------- 104 (421)
-..+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 346788888888889999999999999 99999999999999999999998 4 7999999998653
Q ss_pred --CCccccccCCCCCCccchHHHHHHhhhccccc-----cccccccccccccc-------------cccccccCceEEEe
Q 014621 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-----QVPIYDFKSSSRIG-------------YRTLEVPSSRIVII 164 (421)
Q Consensus 105 --~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~~~~~~~~~-------------~~~~~~~~qrVlIa 164 (421)
++.++|++|++.+++. ++.+|+.+....... .............+ ........||+.|+
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 2458999999998874 999999764311000 00000000000001 01111234999999
Q ss_pred ehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 165 egl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++ ..+|.++++|||++++|+...+.+. +++.+ +.|+ .+.+.++||+++++++|++...+...++
T Consensus 176 ral-----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 176 RAI-----AVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHH-----HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999 9999999999999999999766554 55543 6676 7788899999999999999877766555
No 152
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1e-23 Score=210.33 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=163.0
Q ss_pred eeeeeecCcceecCeeeeeeeEE-EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCe
Q 014621 23 VQLVKKKDSDRYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (421)
Q Consensus 23 ~~l~~~~~~~~y~~~~v~~~ls~-~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~ 101 (421)
+.|+.++.+-.|-++ ..+-. ......|+++|||++.+|+ .+||+|.||||||||-++|.++++..|.|.++|.
T Consensus 275 ~ll~~~~v~v~f~i~---~g~~~r~~~~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~ 348 (534)
T COG4172 275 VLLEVEDLRVWFPIK---GGFLRRTVDHLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQ 348 (534)
T ss_pred ceEEecceEEEEecC---CccccccchheEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCc
Confidence 355555555566332 22211 2345789999999999999 9999999999999999999999977799999999
Q ss_pred ecC----------CCccccccCCCC--CCccchHHHHHHhhhcccc--c------------------ccccccccccccc
Q 014621 102 NDS----------SRIIDGNFDDPR--LTDYDTLLENIRGLKEGKA--V------------------QVPIYDFKSSSRI 149 (421)
Q Consensus 102 ~~~----------~~~ig~vfq~p~--l~~~~tv~enl~~l~~~~~--i------------------~~p~~~~~~~~~~ 149 (421)
++. ++.+-.+||||. +.+.+++.+.|...+.-+. . +-...+..+++.+
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS 428 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence 764 456889999995 6788999999887542111 0 0001112223333
Q ss_pred ccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEE
Q 014621 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVY 219 (421)
Q Consensus 150 ~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~ 219 (421)
| ...||+.|||++ .+.|.+.++|||||+||.....++ +|+++++ |.+- ..|+..+||+|+
T Consensus 429 G-----GQRQRIAIARAl-----iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi 498 (534)
T COG4172 429 G-----GQRQRIAIARAL-----ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498 (534)
T ss_pred c-----chhhHHHHHHHH-----hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE
Confidence 3 234999999999 999999999999999999876654 5888765 7665 899999999999
Q ss_pred EccCcEEeecCCcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHHHh
Q 014621 220 PMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVM 269 (421)
Q Consensus 220 ~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l 269 (421)
+|.+|+|++.|+..++ |.+| +++-|++.+.+.+
T Consensus 499 Vm~~GkiVE~G~~~~i-----------f~~P------~~~YT~~L~~aa~ 531 (534)
T COG4172 499 VMRDGKIVEQGPTEAV-----------FANP------QHEYTRALLAAAF 531 (534)
T ss_pred EEeCCEEeeeCCHHHH-----------hcCC------CcHHHHHHHHhhc
Confidence 9999999999999888 7778 7777777666544
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=1.1e-23 Score=199.84 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=130.8
Q ss_pred eeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------
Q 014621 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------- 104 (421)
Q Consensus 41 ~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----------- 104 (421)
+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|....
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 86 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR 86 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence 445555543 368999999999999 99999999999999999999999 89999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccccccc---ccccccccccc---------cccccccCceEEEeehhhhhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d 172 (421)
++.++|++|++.+++..++.+|+.+.........+ ..........+ ........||+.|++++
T Consensus 87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al----- 161 (228)
T PRK10584 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF----- 161 (228)
T ss_pred hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH-----
Confidence 13589999999998888999999763211000000 00000000011 01111234899999999
Q ss_pred ccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEee
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
..+|.++++|||++++|+.....+ +++++++ |.|+ .+.+. .||+++++++|++.+
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 899999999999999999876654 4666544 7777 55564 599999999998854
No 154
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=2.7e-24 Score=193.08 Aligned_cols=187 Identities=16% Similarity=0.189 Sum_probs=144.0
Q ss_pred cCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 35 ~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
+.+.+.+.+.-.-+...+|++|+|.+++|| .++|+||||||||||+-.++|+. |++|+|.+.|..+.
T Consensus 8 ~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 8 EVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ehhhhhhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 344555666666677899999999999999 99999999999999999999999 99999999998653
Q ss_pred --CCccccccCCCCCCccchHHHHHHhhhc--cccccccc-cccccccccc--c-------ccccccCceEEEeehhhhh
Q 014621 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQVPI-YDFKSSSRIG--Y-------RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 105 --~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~i~~p~-~~~~~~~~~~--~-------~~~~~~~qrVlIaegl~~L 170 (421)
.+.+|++||.+.+++.+|..+|++.+.. ++....+. .......++| . +....+.|||.|+|++
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAf--- 161 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAF--- 161 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHh---
Confidence 3679999999999999999999987643 32111111 0111111121 1 1111234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH---HHHH-HcCCCH-----HHHHHHHhceEEEccCcEEeec
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQ-RVGQEP-----EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~-~~G~ti-----~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
+.+|.+++.||||..||..+-++|. -.++ ++|.|+ ...+..-|+|.+.|..|++++.
T Consensus 162 --a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 162 --AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred --cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999877654 4444 459888 5667778999999999998653
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.4e-24 Score=223.67 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=143.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 4567777777789999999999999 99999999999999999999999 89999999998653 235899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc----cc---ccc-ccc--ccccccccc---------ccccccCceEEEeehhhhhh
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK----AV---QVP-IYD--FKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~----~i---~~p-~~~--~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
+||++.+++..++.+|+....... .. ... ... .......+. .......|||.|++++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al---- 160 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL---- 160 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH----
Confidence 999999999899999997532100 00 000 000 000011110 1111134999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+...+.+ +++++++|.|+ .+.+..+||+++++++|++...+...++
T Consensus 161 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 161 -MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999977655 46666668887 7888999999999999999776665554
No 156
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=1.8e-23 Score=194.52 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=135.3
Q ss_pred eeeeeEEEeCc------EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC----C
Q 014621 39 IEDTLSFEKGF------FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS----S 105 (421)
Q Consensus 39 v~~~ls~~~g~------~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I~~Dg~~~~----~ 105 (421)
-.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|++ |.+|.|.+||.+.. +
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35677777764 679999999999999 99999999999999999999997 57999999998753 4
Q ss_pred CccccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+.++|++|++.+++..|+.+|+...... . ..+++ ..||+.|++++ ..+|.+.++|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------~-----~LS~G-----~~qrv~laral-----~~~p~illlDEP~ 139 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKL-------R-----GLSGG-----ERKRVSIALEL-----VSNPSLLFLDEPT 139 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHh-------c-----cCCHH-----HHHHHHHHHHH-----HcCCCEEEEeCCC
Confidence 5689999999999889999999764310 0 22332 34889999999 8999999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH------H-HHHHHHhceEEEccCcEEee
Q 014621 186 GGVHFDLVKRVF---RDIQRVGQEP------E-EIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~G~ti------~-~vi~~~~d~V~~m~~g~I~p 228 (421)
+++|+...+.+. +++.++|.|+ . ..+.++||++++|++|++..
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 999998766554 5555568777 3 36788999999999998854
No 157
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.9e-24 Score=198.53 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=133.6
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCccc
Q 014621 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~ig 109 (421)
++++.|+++.+ ++||++++ + ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 67788888765 99999999 9 99999999999999999999999 89999999997642 24589
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccc-cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~-~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
|++|++.+++..|+.+|+.......... .........+..+. .......||+.|++++ ..+|.++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~ll 153 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL-----AAQPELL 153 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH-----hcCCCEE
Confidence 9999999998899999997542210000 00000000011110 1111234899999999 9999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 180 LRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
++||||+++|+...+.+ ++++.++ |.|+ .+.+.++||+++++++|++...
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999876655 4666555 7777 6778899999999999998654
No 158
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=5.2e-24 Score=220.65 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=146.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.++++++||...||++|||++.+|| +.+++|.||||||||+|.|+|.. |++|+|.+||.... ...|..
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 5788889999999999999999999 99999999999999999999999 99999999999654 245889
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccc--------ccccccc---------ccccccCceEEEeehhhhhhhc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK--------SSSRIGY---------RTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~--------~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~ 173 (421)
++|++++.+.+|+.+|+......... ....++. ...+.+. .......|-|-||+|+ .
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~-~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl-----~ 161 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRR-FGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL-----S 161 (500)
T ss_pred EeechhccCCccHHHHhhcccccccC-CCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH-----h
Confidence 99999999999999999764321110 0011111 1111111 0111123889999999 8
Q ss_pred cCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
..+.++++||||++|+.....++ +|+++++|.++ ++.+.++|||+.+|.+|+...+.+
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 89999999999999999877654 58888899998 899999999999999999977765
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.90 E-value=1.2e-23 Score=201.41 Aligned_cols=188 Identities=17% Similarity=0.172 Sum_probs=144.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |+.|.|.+||.+.. ++.++|++|
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998753 346899999
Q ss_pred CCCCCccchHHHHHHhhhcccccc---cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..++.+|+.+........ ....-.......+. .......||+.|++++ ..+|.+.++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral-----~~~p~llll 154 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARAL-----AVEPQVLLL 154 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998889999997543211000 00000000011110 1111234899999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+.....+. +++.++ |.|+ .+.+..+||+++.+.+|++.+.++..++
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999776554 555544 7777 6778899999999999999887766555
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=201.45 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=139.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.+..
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 4677777777789999999999999 99999999999999999999983 5 4899999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----ccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----FKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++ .|+.+|+......... ...... ... .............||+.|++++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 346899999999887 7999999764211000 000000 000 0000001112234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+.++||++++|++|.+...+...++
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 164 -----ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred -----hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999999776655 44433 5666 6778899999999999999888776665
No 161
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.6e-24 Score=207.83 Aligned_cols=188 Identities=17% Similarity=0.153 Sum_probs=139.9
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. +.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5667777753 569999999999999 99999999999999999999999 99999999998753 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhccccccc-----ccc---c-cccccccc---cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQV-----PIY---D-FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~-l~~~~tv~enl~~l~~~~~i~~-----p~~---~-~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|+||++. ++...|+.+|+.+......... ... + +....... ........||+.|++++ ..+|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral-----~~~p 159 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL-----ALQP 159 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999984 6667899999976422110000 000 0 00000000 01111234899999999 9999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++++||||++||+.....+ +++++++ |.|+ ++.+. .||+++++++|++...++..++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999976655 4666655 8887 56665 59999999999998888766653
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=1.3e-23 Score=197.80 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=135.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+. .+.++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++|++|
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 3566777753 4679999999999 99999999999999999999999 89999999998653 356899999
Q ss_pred CCCCCccchHHHHHHhhhccccc-c--cccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAV-Q--VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i-~--~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..|+.+|+......... . ....-....+..+. .......||+.|++++ ..+|.+.++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llll 152 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCL-----VRPNPILLL 152 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 99999889999999753211000 0 00000000011110 1111234999999999 889999999
Q ss_pred EEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
|||++++|+.....+. +++.++ |.|+ .+.+.++||+++.|++|++...++
T Consensus 153 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 153 DEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999766554 555544 7777 677788999999999999977653
No 163
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.6e-24 Score=207.68 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=139.7
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig 109 (421)
.+++++.|+ ...+|+++||++++|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... ++.++
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 467777774 5679999999999999 99999999999999999999999 89999999998653 24589
Q ss_pred cccCCCCC-CccchHHHHHHhhhccccccc---cccccccccccc---------cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPRL-TDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~l-~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|+|.. +...++.+|+.+......... ...-.......+ ........||+.|++++ ..+|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral-----~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL-----TMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 99999863 556799999976432110000 000000001111 01111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++++||||+++|+.....+. ++++++|.|+ ++.+. +||+++++++|++...+...++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999998766554 5566668887 56664 69999999999998888776653
No 164
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.9e-24 Score=204.61 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=139.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 16 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 16 VRNLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 4677778877789999999999999 99999999999999999999997 26899999998752
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccc-ccc-----cccc----cccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQ-----VPIY----DFKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~-~i~-----~p~~----~~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++ .|+.+|+....... ... .... .+.. ......+......||+.|++++
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346899999998887 79999997642210 000 0000 0000 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+...+.+. +++. ++.|+ .+.+.++||+++++++|++...+...++
T Consensus 172 -----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 172 -----AIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred -----HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999776555 4443 36666 7778899999999999999887776665
No 165
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=2e-23 Score=194.90 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=134.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~--------~~~i 108 (421)
.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+ . |++|.|.+||.+.. +..+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4678888887889999999999999 9999999999999999999999 4 89999999998653 2248
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCc
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~L 188 (421)
+|++|++.+++..++.+++... ....+++ ..||+.+++++ ..+|.+.++|||++++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~~--------------~~~LS~G-----~~qrv~laral-----~~~p~illlDEPt~~L 135 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRYV--------------NEGFSGG-----EKKRNEILQLL-----LLEPDLAILDEPDSGL 135 (200)
T ss_pred EEeecChhhccCccHHHHHhhc--------------cccCCHH-----HHHHHHHHHHH-----hcCCCEEEEeCCCccC
Confidence 9999999988888888776110 0122222 34889999999 8999999999999999
Q ss_pred cHHHHHHH---HHHHHHcCCCH------HHHHHH-HhceEEEccCcEEeecC
Q 014621 189 HFDLVKRV---FRDIQRVGQEP------EEIIHQ-ISETVYPMYKAFIEPDL 230 (421)
Q Consensus 189 D~~~~rrI---lrdl~~~G~ti------~~vi~~-~~d~V~~m~~g~I~p~~ 230 (421)
|+.....+ +++++++|.|+ .+.+.. +||++++|++|++...+
T Consensus 136 D~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 136 DIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 99876554 45666567777 677777 79999999999998766
No 166
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=205.68 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=138.0
Q ss_pred eeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4566666653 469999999999999 99999999999999999999999 99999999998643
Q ss_pred --CCccccccCCC--CCCccchHHHHHHhhhccccc-----cccc------ccccc--ccccccccccccCceEEEeehh
Q 014621 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKEGKAV-----QVPI------YDFKS--SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 --~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~~i-----~~p~------~~~~~--~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++ .+++ .|+.+|+.+....... .... ..... ......+......||+.|++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 24589999997 3454 6999999764211000 0000 01100 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+...+.+. ++++++|.|+ .+.+..+||+++++++|++...+...++
T Consensus 161 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 161 -----AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred -----HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999766554 5555557787 6778899999999999999877766555
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=1.3e-23 Score=192.62 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=128.4
Q ss_pred eeeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccc
Q 014621 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~ 110 (421)
.+++++.|+.. .+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 35677777653 79999999999999 99999999999999999999999 89999999998643 356899
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
++|++.+++ .++.+|+ ....++ ...||+.|++++ ..+|.++++|||++++|+
T Consensus 80 ~~q~~~~~~-~tv~~~i-----------------~~~LS~-----G~~qrv~laral-----~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 80 LNQRPYLFD-TTLRNNL-----------------GRRFSG-----GERQRLALARIL-----LQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred EccCCeeec-ccHHHhh-----------------cccCCH-----HHHHHHHHHHHH-----hcCCCEEEEECCcccCCH
Confidence 999998876 6888887 112222 234889999999 999999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 191 DLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 191 ~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
...+.+.+.+.+ +|.|+ .+.+. .||+++.|.+|.+...
T Consensus 132 ~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 132 ITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQ 177 (178)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 987766544432 47776 55565 6999999999998653
No 168
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=202.33 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=142.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp------~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+++ ++|.|.++|.++.
T Consensus 6 ~~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45778888887889999999999999 999999999999999999999972 5899999998752
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhc--cc-c-ccccccccccccccc-------------cccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-A-VQVPIYDFKSSSRIG-------------YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~-~-i~~p~~~~~~~~~~~-------------~~~~~~~~qrVlIaeg 166 (421)
++.++|+||++.+++..|+.+|+..... +. . ..............+ ........||+.|+++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 162 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIART 162 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHH
Confidence 3458999999999998999999975321 10 0 000000000000111 0111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+...+.+. +++.+ +.|+ .+.+.++||++++|++|++...++..++
T Consensus 163 l-----~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 163 I-----AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred H-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8899999999999999999766554 55543 5666 7778899999999999999888776665
No 169
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.3e-23 Score=193.33 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=123.6
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccccCCC---CCCc
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~vfq~p---~l~~ 119 (421)
+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++ .+++
T Consensus 15 ~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 8999999999999 99999999999999999999999 89999999997653 24689999985 4677
Q ss_pred cchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH--
Q 014621 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF-- 197 (421)
Q Consensus 120 ~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl-- 197 (421)
..++.+|+..... .+++ ..||+.|++++ ..+|.++++|||++++|+...+.+.
T Consensus 92 ~~t~~e~l~~~~~---------------LS~G-----~~qrl~la~al-----~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 92 DLSVAENIALSSL---------------LSGG-----NQQKVVLARWL-----ARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred CCcHHHHHHHHhh---------------cCHH-----HHHHHHHHHHH-----ccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 7899999976421 2332 24789999999 9999999999999999999766554
Q ss_pred -HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 198 -RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 198 -rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
+++.++|.|+ ++.+.++||++++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 5665567777 6788899999999998863
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=202.99 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=140.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+.+.+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 22 ~~~nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEeeEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 35667777777889999999999999 99999999999999999999998 3 6999999998753
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc----cccc------ccccc-------ccccccccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPI------YDFKS-------SSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~p~------~~~~~-------~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|+||++.+++ .++.+|+......... .... ..... ......+......||+.|+++
T Consensus 99 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 99 MRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 345899999998887 5999999864221100 0000 00000 000000111123489999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+.....+. +++. ++.|+ .+.+..+||++++|++|.+...+...++
T Consensus 178 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 178 I-----AVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred H-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999998766554 5553 36666 6778899999999999999988877766
No 171
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=200.47 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=140.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC------CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp------~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+++ ++|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5788888888889999999999999 999999999999999999999982 6999999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccc------cccc-----cccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPI------YDFK-----SSSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~------~~~~-----~~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.+++++|++.+++ .++.+|+......... .... .... ..............||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 345899999998886 6999999764221000 0000 0000 00000001111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+...+.+.+-+.+ ++.|+ .+.+.++||++++|++|++...+...++
T Consensus 163 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 163 -----AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred -----hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 889999999999999999987665533332 36676 7778899999999999999888776665
No 172
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=209.65 Aligned_cols=189 Identities=20% Similarity=0.307 Sum_probs=149.7
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCC------eeEEEECCeecC-----------CCcccc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS------IAVITMDNYNDS-----------SRIIDG 110 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~------~G~I~~Dg~~~~-----------~~~ig~ 110 (421)
|...++++|||++.+|| .++|+|.||||||-.++.+++++|. +|.|.++|.++- ..+|+|
T Consensus 21 ~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 21 GTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred cceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 47899999999999999 9999999999999999999999953 789999998753 247999
Q ss_pred ccCCC--CCCccchHHHHHHhhhc---c---cc-------------cccc--ccccccccccccccccccCceEEEeehh
Q 014621 111 NFDDP--RLTDYDTLLENIRGLKE---G---KA-------------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 111 vfq~p--~l~~~~tv~enl~~l~~---~---~~-------------i~~p--~~~~~~~~~~~~~~~~~~~qrVlIaegl 167 (421)
+||+| .+.+..|+.+.+..... + .. +..| ..+..+++.+|++ .|||+||.|+
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq-----RQRVMIAMAL 172 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ-----RQRVMIAMAL 172 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch-----hhHHHHHHHH
Confidence 99999 46777788777765321 1 00 1111 1233334444433 4999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
+.+|.+++.||||++||+....+| ++++..+ |+++ ..++.+++|+|++|..|.+.+++..+++
T Consensus 173 -----an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~l-- 245 (534)
T COG4172 173 -----ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL-- 245 (534)
T ss_pred -----cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHH--
Confidence 999999999999999999876655 4888766 9888 8999999999999999999999999888
Q ss_pred eCCCCCcccccCCeeeccCCCcchHHHHH
Q 014621 238 INKFNPFTGFQNPTYILKSTRPVTVDEIK 266 (421)
Q Consensus 238 ~~~~~p~~~~~~p~~v~k~~~~~~~~~i~ 266 (421)
|.+| +++-|+..+.
T Consensus 246 ---------F~~P------qHpYTr~Ll~ 259 (534)
T COG4172 246 ---------FAAP------QHPYTRKLLA 259 (534)
T ss_pred ---------hhCC------CChHHHHHHh
Confidence 5666 6666654443
No 173
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-23 Score=221.78 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=143.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC--------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--~~G~I~~Dg~~~~--------~~~i 108 (421)
.+++++.|++..++++|||++++|+ ++||+||||||||||+|+|+|++ | ++|.|.++|.+.. ++.+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 4567777777789999999999999 99999999999999999999998 5 6999999998653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc---ccc-----cccccccccccccc---------ccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK---AVQ-----VPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~---~i~-----~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
+|+||++.+++..|+.+|+.+..... ... ..... .....+. .......||+.||+++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al---- 158 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK--LLAQLKLDINPATPVGNLGLGQQQLVEIAKAL---- 158 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHH--HHHHcCCCCCcccchhhCCHHHHHHHHHHHHH----
Confidence 99999999999999999997643210 000 00000 0111110 1111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++||||++||+.....+. +++.++|.|+ .+.+.++||+++++++|++...+...++
T Consensus 159 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 159 -NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred -hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 8999999999999999998766554 5665568777 7888999999999999999877665544
No 174
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=208.83 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=142.7
Q ss_pred eeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC------
Q 014621 39 IEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS------ 104 (421)
Q Consensus 39 v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~------ 104 (421)
..+++++.|. ...+|+++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.+||.++.
T Consensus 82 ~~~nls~~y~~~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEEeeEEEecCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4678888883 4679999999999999 99999999999999999999997 35899999999763
Q ss_pred ---CCccccccCCCCCCccchHHHHHHhhhccccc-ccc---------cccccc----ccccc---cccccccCceEEEe
Q 014621 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-QVP---------IYDFKS----SSRIG---YRTLEVPSSRIVII 164 (421)
Q Consensus 105 ---~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-~~p---------~~~~~~----~~~~~---~~~~~~~~qrVlIa 164 (421)
++.++|+||+|.+++ .|+++|+.+....... ... ...... ....+ ........||+.||
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 356899999999885 7999999864211000 000 000000 00011 11112234999999
Q ss_pred ehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 165 egl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++ ..+|.++++|||++++|+...+.+. +++.+ +.|+ ++.+.++||++++|++|++.+.+...++
T Consensus 238 RAl-----~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 238 RAI-----ALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHH-----HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 8899999999999999999876654 44433 6776 7888899999999999999999888887
No 175
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.3e-24 Score=227.03 Aligned_cols=220 Identities=19% Similarity=0.224 Sum_probs=169.7
Q ss_pred CCCCCCCccccccccceeeeeecC--cceecCeeeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHH
Q 014621 7 SGADSPRRRPGLLRDQVQLVKKKD--SDRYEIVPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (421)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~y~~~~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKST 81 (421)
++.++.+|..+++.+++.+...-. ....+.+.-.++++|.|.. ..+|+|+||+|++|+ +++++|||||||||
T Consensus 433 kgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKST 509 (716)
T KOG0058|consen 433 KGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKST 509 (716)
T ss_pred HhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHH
Confidence 567888999999999998877732 2245556778999999964 579999999999999 99999999999999
Q ss_pred HHHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---cc-------------
Q 014621 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ------------- 137 (421)
Q Consensus 82 L~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~------------- 137 (421)
++..|..+. |++|.|.+||.++. +++||++-|+|-+|. .|+.|||.+...... +.
T Consensus 510 iasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~ 588 (716)
T KOG0058|consen 510 IASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFIT 588 (716)
T ss_pred HHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH
Confidence 999999999 99999999999764 578999999999986 689999998654211 00
Q ss_pred -cc-ccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCHHHHHH-
Q 014621 138 -VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIH- 212 (421)
Q Consensus 138 -~p-~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti~~vi~- 212 (421)
.| -|+-..+++ |.+.....+||++||||+ .-+|.++++||+|++||.+...-+..-+.+ +++|+.-+++
T Consensus 589 ~~p~gY~T~VGEk-G~qLSGGQKQRIAIARAL-----lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHR 662 (716)
T KOG0058|consen 589 NFPDGYNTVVGEK-GSQLSGGQKQRIAIARAL-----LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHR 662 (716)
T ss_pred hCccccccccCCc-cccccchHHHHHHHHHHH-----hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehh
Confidence 01 011111111 111222345999999999 899999999999999999876555544432 4688722222
Q ss_pred ----HHhceEEEccCcEEeecCCcccEE
Q 014621 213 ----QISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 213 ----~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+-+|++.++++|++.+.|.+.++.
T Consensus 663 LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 663 LSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred hhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 347999999999999999998885
No 176
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=201.60 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=139.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 5677777777789999999999999 99999999999999999999998 3 5899999998753
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc-c-----cccc----ccccc-------cccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-Q-----VPIY----DFKSS-------SRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-~-----~p~~----~~~~~-------~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++. ++.+|+.+....... . .... ..... ............||+.|++++
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2458999999998874 999999764221100 0 0000 00000 000001111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+.....+. +++.+ +.|+ .+.+.++||+++.|.+|++...+...++
T Consensus 171 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 171 -----ATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred -----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 8999999999999999998766554 45443 6666 6778899999999999999988877776
No 177
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=3.8e-24 Score=228.96 Aligned_cols=216 Identities=17% Similarity=0.186 Sum_probs=163.5
Q ss_pred CCCccccccccceeeeeecCc-ceecCeeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHh
Q 014621 11 SPRRRPGLLRDQVQLVKKKDS-DRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (421)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~-~~y~~~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~g 88 (421)
+-+|..+++..+..++..... ......--.++++|.|+ +.++++++||.+++|+ .+||+|||||||||+++.|.+
T Consensus 301 a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred HHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHhc
Confidence 334566666665444444432 23333467899999998 6899999999999999 999999999999999999999
Q ss_pred cC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcc---cccccc-----ccccc------cc
Q 014621 89 FM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG---KAVQVP-----IYDFK------SS 146 (421)
Q Consensus 89 ll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~---~~i~~p-----~~~~~------~~ 146 (421)
+. |+.|.|.+||.++. ++.+++++|++.+|+ .|+.+||...... +.+... ..++- ..
T Consensus 378 ~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~d 456 (567)
T COG1132 378 LYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYD 456 (567)
T ss_pred cCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccc
Confidence 99 89999999999765 578999999999998 8999999987532 111000 01100 01
Q ss_pred cccc--c-ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHh
Q 014621 147 SRIG--Y-RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQIS 215 (421)
Q Consensus 147 ~~~~--~-~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~ 215 (421)
...+ + .......||+.|||++ .-+|.++++||+|+++|..+.+.+.+.+.+ +|+|+ ...+.. |
T Consensus 457 t~vge~G~~LSgGQrQrlaiARal-----l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-a 530 (567)
T COG1132 457 TIVGERGVNLSGGQRQRLAIARAL-----LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-A 530 (567)
T ss_pred ceecCCCccCCHHHHHHHHHHHHH-----hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-C
Confidence 1111 1 1122345999999999 889999999999999999998888866642 46665 444555 9
Q ss_pred ceEEEccCcEEeecCCcccEE
Q 014621 216 ETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 216 d~V~~m~~g~I~p~~~~aDii 236 (421)
|++.+|++|++.+.|.+.+++
T Consensus 531 D~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 531 DRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CEEEEEECCEEEEecCHHHHH
Confidence 999999999999999998885
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=200.55 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=140.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 4677777877789999999999999 99999999999999999999998 53 799999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc--c----cccc----cccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--Q----VPIY----DFKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i--~----~p~~----~~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++..|+.+|+......... . .... .... .............||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 23589999999999888999999753211000 0 0000 0000 0000001111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+...+.+. ++++ ++.|+ .+.+..+||+++.|.+|++...+...++
T Consensus 164 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 164 -----AVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998766554 5554 36666 7778899999999999999887776665
No 179
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=203.61 Aligned_cols=187 Identities=15% Similarity=0.212 Sum_probs=140.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ++|.|.+||.+..
T Consensus 41 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 41 VAKNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 46788888888889999999999999 99999999999999999999974 3 8999999998642
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----ccc----ccccc---cccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----FKS----SSRIG---YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~~~----~~~~~---~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++. ++.+|+.+....... ...... +.. ..... ........||+.|+++
T Consensus 118 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 196 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVART 196 (286)
T ss_pred hhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHH
Confidence 2468999999998874 999999864321000 000000 000 00000 0111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||+++||+...+.+. +++.. +.|+ .+.+..+||++++|++|++...+...++
T Consensus 197 L-----~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 197 L-----AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred H-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999999776665 44433 5666 6778899999999999999888776665
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.6e-23 Score=200.40 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=140.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |+ .|.|.++|.+..
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 5678888887889999999999999 99999999999999999999998 65 699999998642
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhc--cccc----cccccc----ccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAV----QVPIYD----FKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~i----~~p~~~----~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++. ++.+|+.+... +... ...... ... .............||+.|++++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3468999999998875 99999976432 1000 000000 000 0000001112234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+ ++++. +|.|+ .+.+.++||+++++++|.+...++..++
T Consensus 163 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 163 -----AIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 899999999999999999876644 45553 47777 7778899999999999999887776665
No 181
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.89 E-value=8e-24 Score=231.30 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=149.3
Q ss_pred eeeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
.-..++++|.|+ ...+|+|+||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 346789999994 4689999999999999 99999999999999999999999 99999999999764 46
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcc--ccc----cc-cccc----cc--ccccccc---ccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEG--KAV----QV-PIYD----FK--SSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~--~~i----~~-p~~~----~~--~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
.+++++|++.+|+ .|+++|+...... ..+ +. ...+ +. .....+. .......||+.|||++
T Consensus 528 ~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl--- 603 (686)
T TIGR03797 528 QLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL--- 603 (686)
T ss_pred ccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH---
Confidence 7999999999986 6999999875320 000 00 0000 00 0011111 1112245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+.++|+ .+.+. .+|+|++|++|++.+.|++.+++
T Consensus 604 --l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 604 --VRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred --hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 88999999999999999999999988887767777 55554 49999999999999999888874
No 182
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=227.64 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=140.0
Q ss_pred eeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec------------
Q 014621 41 DTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND------------ 103 (421)
Q Consensus 41 ~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~------------ 103 (421)
+++++.|+ ...++++|||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|..+
T Consensus 16 ~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~ 92 (623)
T PRK10261 16 ENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92 (623)
T ss_pred eceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence 34444443 3579999999999999 99999999999999999999999 8999999987521
Q ss_pred ---------CCCccccccCCC--CCCccchHHHHHHhhhccc-ccc-----cccccccccccccc------------ccc
Q 014621 104 ---------SSRIIDGNFDDP--RLTDYDTLLENIRGLKEGK-AVQ-----VPIYDFKSSSRIGY------------RTL 154 (421)
Q Consensus 104 ---------~~~~ig~vfq~p--~l~~~~tv~enl~~l~~~~-~i~-----~p~~~~~~~~~~~~------------~~~ 154 (421)
.++.++|+||+| .+++..|+.+|+.+..... ... ..... .....+. +..
T Consensus 93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~l~~~gL~~~~~~~~~~~~~LS 170 (623)
T PRK10261 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR--MLDQVRIPEAQTILSRYPHQLS 170 (623)
T ss_pred CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHHCCCCChhhHHhCCCccCC
Confidence 013689999998 5778889999998643210 000 00000 0111111 111
Q ss_pred cccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHH---HHHHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 014621 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 155 ~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~-G~ti------~~vi~~~~d~V~~m~~g 224 (421)
....|||.||+++ ..+|.++++||||++||+.... +++++++++ |.|+ ++.+.++||++++|++|
T Consensus 171 gGq~QRv~iA~AL-----~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G 245 (623)
T PRK10261 171 GGMRQRVMIAMAL-----SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 (623)
T ss_pred HHHHHHHHHHHHH-----hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCC
Confidence 1234999999999 9999999999999999999854 556777655 8887 78889999999999999
Q ss_pred EEeecCCcccEE
Q 014621 225 FIEPDLQTAHIK 236 (421)
Q Consensus 225 ~I~p~~~~aDii 236 (421)
++...+...++.
T Consensus 246 ~i~~~g~~~~~~ 257 (623)
T PRK10261 246 EAVETGSVEQIF 257 (623)
T ss_pred eecccCCHHHhh
Confidence 999888777763
No 183
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-23 Score=204.05 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=136.4
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 5677777877889999999999999 99999999999999999999997 37999999998642
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc----cccccc----ccc----ccccc---cccccccCceEEEeehhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPIYD----FKS----SSRIG---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~p~~~----~~~----~~~~~---~~~~~~~~qrVlIaegl~~ 169 (421)
++.++|+||++.+++ .|+.+|+.+....... ...... +.. ..... .+......||+.|++++
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral-- 169 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI-- 169 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH--
Confidence 245899999999887 4999999764321100 000000 000 00000 01111234899999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccC-----------cEEeec
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYK-----------AFIEPD 229 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~-----------g~I~p~ 229 (421)
..+|.++++|||+++||+...+++. +++. ++.|+ .+.+.++||++++|++ |++.+.
T Consensus 170 ---~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 170 ---AIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred ---hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 8999999999999999998776655 4443 36666 7888999999999997 445555
Q ss_pred CCcccE
Q 014621 230 LQTAHI 235 (421)
Q Consensus 230 ~~~aDi 235 (421)
+...++
T Consensus 246 ~~~~~~ 251 (269)
T PRK14259 246 NETKKI 251 (269)
T ss_pred CCHHHH
Confidence 555444
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-23 Score=202.46 Aligned_cols=187 Identities=15% Similarity=0.103 Sum_probs=139.7
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+..
T Consensus 23 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred EEEEEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 46788888887889999999999999 99999999999999999999974 47999999998652
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc------ccccc----cccc-------ccccccccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIY----DFKS-------SSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~----~~~~-------~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++. ++.+|+......... ..... .+.. ......+......||+.|+++
T Consensus 100 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara 178 (268)
T PRK14248 100 LRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART 178 (268)
T ss_pred HhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence 2458999999988874 999999754211000 00000 0000 000000111223499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+.++||++++|++|.+...+...++
T Consensus 179 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 179 L-----AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred H-----hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8999999999999999998766554 55543 5666 6778899999999999999877765554
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=200.66 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=140.7
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 5 SVKDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred EEEEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 35788888887789999999999999 99999999999999999999986 3 5899999998653
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc------ccccc----cccc-------ccccccccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIY----DFKS-------SSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~----~~~~-------~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++ .++.+|+.+....... ..... .+.. .............||+.|+++
T Consensus 82 ~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 82 LRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 345899999998887 8999999764311100 00000 0000 000000111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+...+.+. +++. +|.|+ .+.+.++||+++.+++|++...+...++
T Consensus 161 l-----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 161 L-----AVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred H-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9 9999999999999999999776554 4553 36776 7778899999999999999877766655
No 186
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=200.89 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=139.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 5677788877789999999999999 99999999999999999999998 3 7899999998643
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----ccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----FKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++ .++.+|+.+....... ...... +.. .............||+.|++++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 246899999999887 7999999764211100 000000 000 0000001111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+..+||+++++++|++...+...++
T Consensus 162 -----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 162 -----AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred -----hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 8999999999999999999766554 44443 6676 6778899999999999999877765554
No 187
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-23 Score=206.38 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=138.8
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCeecC-------CC
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDS-------SR 106 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~---G~I~~Dg~~~~-------~~ 106 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |+. |.|.++|.+.. ++
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4456666642 469999999999999 99999999999999999999999 776 89999998764 24
Q ss_pred ccccccCCCC-CCccchHHHHHHhhhcccccc-----ccccc----cccccccc---cccccccCceEEEeehhhhhhhc
Q 014621 107 IIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQ-----VPIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 107 ~ig~vfq~p~-l~~~~tv~enl~~l~~~~~i~-----~p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
.++|+||++. ++...|+.+|+.+........ ..... +....... ........||+.|++++ .
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral-----~ 159 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL-----A 159 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH-----H
Confidence 6899999985 567789999997642211100 00000 00000000 01111234899999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+|.++++|||++++|+...+.+. +++.++ |.|+ ++.+ .+||++++|++|++...++..++.
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999776554 566554 8887 5566 479999999999999988877764
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2e-23 Score=199.03 Aligned_cols=186 Identities=15% Similarity=0.137 Sum_probs=138.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+... .++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 456667776433 38999999999 99999999999999999999999 89999999998653 246899999
Q ss_pred CCCCCccchHHHHHHhhhccc-ccc-c-ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGK-AVQ-V-PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~-~i~-~-p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..++.+|+.+..... ... . ...-....+..+. .......||+.|++++ ...|.+.++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~lllL 153 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL-----VREQPILLL 153 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 999998899999997532110 000 0 0000000111111 1111124899999999 999999999
Q ss_pred EEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+...+.+ ++++.++ |.|+ .+.+.++||+++.+.+|++...++..++
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999876554 4565543 7777 7778899999999999999877766555
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=2.5e-23 Score=203.60 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=140.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC--------eeEEEECCeecC------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYNDS------ 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~--------~G~I~~Dg~~~~------ 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+ +|.|.++|.+..
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4677888888889999999999999 99999999999999999999999 76 899999998653
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccc--ccc-ccc----ccccccccccc---------ccccccCceEEEeehh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQ-VPI----YDFKSSSRIGY---------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~-~p~----~~~~~~~~~~~---------~~~~~~~qrVlIaegl 167 (421)
++.++|++|++..+...|+.+|+....... ... ... .........+. +......||+.|++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 234789999987655689999997642110 000 000 00000001110 1111124899999999
Q ss_pred hhh---h-hccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 168 YAL---S-EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 168 ~~L---~-d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
... + .+..|.++++|||++++|+....++. +++.++ |.|+ .+.+..+||+++++.+|++...+...
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 210 0 12589999999999999999776554 566555 7877 67788899999999999998776655
Q ss_pred cE
Q 014621 234 HI 235 (421)
Q Consensus 234 Di 235 (421)
++
T Consensus 241 ~~ 242 (272)
T PRK13547 241 DV 242 (272)
T ss_pred HH
Confidence 54
No 190
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=1.5e-23 Score=195.74 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=127.9
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CCcc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~~i 108 (421)
+++++.|++..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 578888888889999999999999 99999999999999999999999 89999999998731 2468
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccc---------cccccccCceEEEeehhhhhhhccCC
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
+|++|++.+++..|+.+|+.+........... .-.......+ .+......||+.|++++ ..+|
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral-----~~~p 153 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI-----LKDP 153 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH-----HcCC
Confidence 99999999998899999998642211000000 0000000111 01111234899999999 8999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM 221 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m 221 (421)
.++++|||++++|+...+.+. +++.++|.|+ .+.+ .+||++++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999876655 5555557776 4544 478888764
No 191
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=199.83 Aligned_cols=186 Identities=14% Similarity=0.120 Sum_probs=139.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------C
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------S 105 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------~ 105 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.+.. +
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 4677777777789999999999999 99999999999999999999998 5 4899999998652 2
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccccc-ccc-----cc----ccc-------ccccccccccccCceEEEeehhh
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPI-----YD----FKS-------SSRIGYRTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~-~p~-----~~----~~~-------~~~~~~~~~~~~~qrVlIaegl~ 168 (421)
+.++|++|++.+++ .|+.+|+.......... ... .. ... .............||+.|++++
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral- 160 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI- 160 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH-
Confidence 45899999999887 79999997642111000 000 00 000 0000001111234899999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+..+||+++++.+|++...++..++
T Consensus 161 ----~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 161 ----AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred ----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999998766544 55543 5666 7788999999999999999887766554
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=200.11 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=139.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc---CC---CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl---lp---~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+ .| ++|.|.+||.+..
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 4677778877889999999999999 9999999999999999999997 33 4899999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccccc----ccccccccccccc-------------cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ----VPIYDFKSSSRIG-------------YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~----~p~~~~~~~~~~~-------------~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++ .|+.+|+.+........ ............+ ........||+.|++++
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 235899999998887 59999997642110000 0000000001011 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++|||++++|+.....+. +++. +|.|+ .+.+.++||+++.+++|++...+..+++.
T Consensus 162 -----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 162 -----AVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred -----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999999999999766554 5553 46776 67788999999999999999888877773
No 193
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=201.82 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=138.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ | ..|.|.++|.++.
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 4567777777789999999999999 99999999999999999999997 3 4899999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc----cccc---cc-ccc----ccccc---cccccccCceEEEeehhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPI---YD-FKS----SSRIG---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~p~---~~-~~~----~~~~~---~~~~~~~~qrVlIaegl~~ 169 (421)
++.++|+||++.+++. ++.+|+......... .... .. ... ..... .+......||+.|++++
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL-- 176 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI-- 176 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH--
Confidence 2468999999988874 999999764211000 0000 00 000 00000 01111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc---------CcEEeecCC
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY---------KAFIEPDLQ 231 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~---------~g~I~p~~~ 231 (421)
..+|.++++|||+++||+.....+. +++.+ +.|+ .+.+.++||++++|+ +|++...++
T Consensus 177 ---~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 177 ---AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred ---hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 8999999999999999999776655 44443 5666 778899999999998 799988887
Q ss_pred cccE
Q 014621 232 TAHI 235 (421)
Q Consensus 232 ~aDi 235 (421)
..++
T Consensus 253 ~~~~ 256 (274)
T PRK14265 253 TEQM 256 (274)
T ss_pred HHHH
Confidence 7776
No 194
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.89 E-value=1.1e-23 Score=231.03 Aligned_cols=190 Identities=15% Similarity=0.098 Sum_probs=149.6
Q ss_pred eeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
.--.++++|.|+. ..+|+++||++++|+ .++|+|+||||||||+++|+|+. |+.|.|.+||.++. ++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHh
Confidence 3457899999963 679999999999999 99999999999999999999999 99999999998754 56
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc---cccc-----c----ccccc--cccccc---cccccccCceEEEeehhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----P----IYDFK--SSSRIG---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~~-----p----~~~~~--~~~~~~---~~~~~~~~qrVlIaegl~~ 169 (421)
.++|++|++.+|+ .|+++||....... .+.. . ...+. .....+ ........||+.|||++
T Consensus 554 ~i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal-- 630 (710)
T TIGR03796 554 SVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL-- 630 (710)
T ss_pred heeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH--
Confidence 7999999999986 69999997642110 0000 0 00000 001111 11112235999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+.++|+ .+.+. .||++++|++|++.+.+.+.+++
T Consensus 631 ---l~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 631 ---VRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred ---hhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEeCCEEEEecCHHHHH
Confidence 88999999999999999999999998888778887 55554 49999999999999999888874
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.9e-23 Score=201.79 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=141.0
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 45678888887889999999999999 99999999999999999999998 5 5999999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccc-cc---c--------cccccccc--cccc---cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-VQ---V--------PIYDFKSS--SRIG---YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~-i~---~--------p~~~~~~~--~~~~---~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++ .++.+|+........ .. . ........ .... ........||+.|++++
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 346899999999887 799999976421100 00 0 00000000 0000 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+...+.+. +++++ +.|+ .+.+.++||++++|.+|++...+...++
T Consensus 179 -----~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 179 -----AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred -----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999999877665 44443 4666 7778899999999999999888776666
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.5e-23 Score=199.78 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=139.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ + ++|.|.++|.++.
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 4677788877889999999999999 99999999999999999999986 2 3899999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----cccc----cccc---cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----FKSS----SRIG---YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~~~~----~~~~---~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++. |+.+|+.+....... ...... +... .... ........||+.+++++
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 2458999999998874 999999864321100 000000 0000 0000 01111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+.....+. +++.+ +.|+ .+.+.++||+++++++|++...+...++
T Consensus 165 -----~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 165 -----AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred -----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 8999999999999999999776554 45443 5676 6778899999999999999888877666
No 197
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=3.9e-23 Score=197.77 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=140.4
Q ss_pred eeecCcceecCee-------eeee-eEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEE
Q 014621 26 VKKKDSDRYEIVP-------IEDT-LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI 96 (421)
Q Consensus 26 ~~~~~~~~y~~~~-------v~~~-ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I 96 (421)
...+.++.|+... .+++ +...||.+.+|+++||++++|+ +++|+|+||||||||+++|+|++ |++|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i 78 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 3456677775422 1112 2356788899999999999999 99999999999999999999998 999999
Q ss_pred EECCeecC------CCcccccc-CCCCCCccchHHHHHHhhhccccc-----ccccccccccccccc---------cccc
Q 014621 97 TMDNYNDS------SRIIDGNF-DDPRLTDYDTLLENIRGLKEGKAV-----QVPIYDFKSSSRIGY---------RTLE 155 (421)
Q Consensus 97 ~~Dg~~~~------~~~ig~vf-q~p~l~~~~tv~enl~~l~~~~~i-----~~p~~~~~~~~~~~~---------~~~~ 155 (421)
.++|.+.. ++.++|++ |++.+++..++.+|+......... ...... ..+..+. ....
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~~gl~~~~~~~~~~LS~ 156 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE--LSELLDLEELLDTPVRQLSL 156 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHcCChhHhcCChhhCCH
Confidence 99998642 34688988 566777788999998764321000 000000 0000010 1111
Q ss_pred ccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcE
Q 014621 156 VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 156 ~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
...||+.+++++ ..+|.++++|||++++|+...+.+. ++++++ |.|+ .+.+..+||+++.+++|+
T Consensus 157 G~~qrl~la~al-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 157 GQRMRAEIAAAL-----LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred HHHHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 234899999999 8999999999999999999876655 555444 7777 677899999999999999
Q ss_pred Eeec
Q 014621 226 IEPD 229 (421)
Q Consensus 226 I~p~ 229 (421)
+...
T Consensus 232 i~~~ 235 (236)
T cd03267 232 LLYD 235 (236)
T ss_pred EEec
Confidence 8643
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4e-23 Score=201.77 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=141.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 46778888887789999999999999 99999999999999999999997 38999999998652
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc------cccccc----c----ccccccc---cccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV------QVPIYD----F----KSSSRIG---YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i------~~p~~~----~----~~~~~~~---~~~~~~~~qrVlIaeg 166 (421)
++.++|+||++.+++ .++.+|+.+....... ...... + ....... ........||+.|+++
T Consensus 103 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 103 LRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 345899999999887 4999999764211000 000000 0 0000000 0111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+....++. +++.+ +.|+ .+.+.++||++++|++|++...+...++
T Consensus 182 L-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 182 L-----AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred H-----HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 8899999999999999999876655 45543 6676 7778899999999999999888776665
No 199
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.89 E-value=5.1e-23 Score=198.47 Aligned_cols=188 Identities=16% Similarity=0.125 Sum_probs=136.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee-----cC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~-----~~--------- 104 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+ ..
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 5677788877789999999999999 99999999999999999999999 899999999865 32
Q ss_pred --CCccccccCCCC--CCccchHHHHHHhhhc--c-ccc-ccccccccccccccc----------ccccccCceEEEeeh
Q 014621 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLKE--G-KAV-QVPIYDFKSSSRIGY----------RTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 --~~~ig~vfq~p~--l~~~~tv~enl~~l~~--~-~~i-~~p~~~~~~~~~~~~----------~~~~~~~qrVlIaeg 166 (421)
++.++|++|++. ++...++.+|+..... . ... .....-....+..+. .......||+.|+++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 135899999975 3344567777753210 0 000 000000000011110 111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ...|.++++|||++++|+...+.+. +++.++ |.|+ .+.+..+||++++|++|++...+...++
T Consensus 163 l-----~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 163 L-----VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred H-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 9 9999999999999999998776554 555443 7777 7778889999999999999888776666
No 200
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2e-23 Score=198.81 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=136.5
Q ss_pred eeeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+.. .+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 46777777654 79999999999999 99999999999999999999999 89999999998653 34589
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc-c-------ccc----c--ccccccc---cccccccCceEEEeehhhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV-P-------IYD----F--KSSSRIG---YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~-p-------~~~----~--~~~~~~~---~~~~~~~~qrVlIaegl~~L~d 172 (421)
|++|++.+++ .++.+|+........... . ... + ....... ........||+.|++++
T Consensus 80 ~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al----- 153 (234)
T cd03251 80 LVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL----- 153 (234)
T ss_pred EeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH-----
Confidence 9999998886 699999976432110000 0 000 0 0000000 01111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++|||++++|+.....+.+-+.+ +|.|+ .+.+.. ||+++++++|++...+...++
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 999999999999999999987766544432 47776 556665 999999999999776654444
No 201
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=5.4e-23 Score=217.00 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=142.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC--------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--~~G~I~~Dg~~~~--------~~~i 108 (421)
.+++++.|+...++++|||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+.. ++.+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 4678888888889999999999999 99999999999999999999998 5 6999999998653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc----ccccc---cccccccccccc----------ccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK----AVQVP---IYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~----~i~~p---~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~ 171 (421)
+|+||++.+++..++.+|+.+..... ..... .......+..+. +......||+.||+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al---- 156 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL---- 156 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH----
Confidence 99999999999999999997642110 00000 000000011110 1111234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
..+|.++++||||++||+.....+ +++++++|.|+ .+.+.++||++++|++|++...+...
T Consensus 157 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 157 -NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred -hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 889999999999999999977665 46666678887 78889999999999999997665443
No 202
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=201.18 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=141.0
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC-----eeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~-----~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |+ .|.|.++|.+..
T Consensus 9 ~~~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 9 KVNNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred EEeeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 35677788877789999999999999 99999999999999999999999 54 799999997642
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccccc----ccccccccccccc----------c---cccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPIYDFKSSSRI----------G---YRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~p~~~~~~~~~~----------~---~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++ .|+.+|+......... ............. . ........||+.|+++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 245899999998887 8999999754211000 0000000000000 0 0111123489999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccC-----cEEeecCC
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYK-----AFIEPDLQ 231 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~-----g~I~p~~~ 231 (421)
+ ..+|.++++|||++++|+.....+. +++++ +|.|+ .+.+.++||++++|++ |++...++
T Consensus 165 l-----~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 165 L-----AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred H-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 9 8999999999999999999876654 55443 47877 7888999999999999 99988877
Q ss_pred cccE
Q 014621 232 TAHI 235 (421)
Q Consensus 232 ~aDi 235 (421)
..++
T Consensus 240 ~~~~ 243 (261)
T PRK14258 240 TKKI 243 (261)
T ss_pred HHHH
Confidence 7776
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.1e-23 Score=217.34 Aligned_cols=183 Identities=12% Similarity=0.079 Sum_probs=140.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.|++..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 4577778877789999999999999 99999999999999999999999 89999999998653 346899
Q ss_pred ccCCCCCCccchHHHHHHhhhccc--c-ccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK--A-VQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~--~-i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++|++.+++..|+.+|+.+..... . ... ...-....+..+. +......||+.|++++ ..+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral-----~~~ 158 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKAL-----ARN 158 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHH-----HhC
Confidence 999999999899999998642100 0 000 0000000001110 1111234999999999 899
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
|.++++||||++||+...+++. +++.++|.|+ .+.+.++||++++|++|++....
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999999999776655 5665668887 77888999999999999986543
No 204
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-23 Score=199.86 Aligned_cols=187 Identities=14% Similarity=0.084 Sum_probs=140.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 5778888877889999999999999 99999999999999999999998 4 5999999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc----cccccccccccccc-------------cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QVPIYDFKSSSRIG-------------YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~p~~~~~~~~~~~-------------~~~~~~~~qrVlIaegl 167 (421)
++.++|+||++.+++..|+.+|+......... ..........+..+ ........||+.|++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 24589999999999889999999764211000 00000000000011 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc------CcEEeecCCc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY------KAFIEPDLQT 232 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~------~g~I~p~~~~ 232 (421)
..+|.++++|||++++|+.....+. +++. ++.|+ .+.+.++||+++++. +|++...+..
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 164 -----AVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred -----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 8999999999999999998766554 5553 35676 677889999999996 7888877766
Q ss_pred ccE
Q 014621 233 AHI 235 (421)
Q Consensus 233 aDi 235 (421)
.++
T Consensus 238 ~~~ 240 (258)
T PRK14241 238 EKI 240 (258)
T ss_pred HHH
Confidence 665
No 205
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.9e-23 Score=204.52 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=137.6
Q ss_pred eeeeeEEEeCcE-----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~-----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.|+.. .+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 8 ~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 8 ILDNVSYTYAKKTPFEFKALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred EEEEEEEEeCCCCccccceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 356677777543 59999999999999 99999999999999999999999 89999999997642
Q ss_pred ----CCccccccCCCCC-CccchHHHHHHhhhcccccc-----ccc------cccc--cccccccccccccCceEEEeeh
Q 014621 105 ----SRIIDGNFDDPRL-TDYDTLLENIRGLKEGKAVQ-----VPI------YDFK--SSSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 ----~~~ig~vfq~p~l-~~~~tv~enl~~l~~~~~i~-----~p~------~~~~--~~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.. +...|+.+|+.+........ ... .... .......+......||+.|+++
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 2358999999742 22358999997643211000 000 0000 0000000111123499999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+ ..+|.++++|||++++|+...+.+ ++++.++ |.|+ .+.+.++||++++|++|++...+...++
T Consensus 165 l-----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 165 I-----AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred H-----HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9 899999999999999999976655 4555543 7777 6778899999999999999877766554
No 206
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5e-23 Score=200.28 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=138.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.++.
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 5677777877789999999999999 99999999999999999999986 2 6899999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc--cc--ccc---c-ccc-------ccccccccccccCceEEEeehhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--QV--PIY---D-FKS-------SSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i--~~--p~~---~-~~~-------~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
++.++|++|++.+++ .++.+|+......... .. ... . ... ......+......||+.|++++
T Consensus 90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral-- 166 (264)
T PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI-- 166 (264)
T ss_pred hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH--
Confidence 345899999998887 4999999764321100 00 000 0 000 0000001111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc---------CcEEeecCC
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY---------KAFIEPDLQ 231 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~---------~g~I~p~~~ 231 (421)
..+|.++++|||++++|+.....+. +++.+ +.|+ .+.+.++||+++.|+ +|++...+.
T Consensus 167 ---~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 167 ---AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred ---hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 8899999999999999999876655 44443 4666 788899999999998 788888777
Q ss_pred cccE
Q 014621 232 TAHI 235 (421)
Q Consensus 232 ~aDi 235 (421)
..|+
T Consensus 243 ~~~~ 246 (264)
T PRK14243 243 TEKI 246 (264)
T ss_pred HHHH
Confidence 7666
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=199.77 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=142.2
Q ss_pred CeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC-----
Q 014621 36 IVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS----- 104 (421)
Q Consensus 36 ~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~----- 104 (421)
++.-.+++++.|+...+++++||++.+|+ +++|+|+||||||||+++|+|+. |+.|.|.++|.+..
T Consensus 4 ~~~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 4 IHASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred eEEEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 45567888999988899999999999999 99999999999999999999997 25899999998642
Q ss_pred ----CCccccccCCCCCCccchHHHHHHhhhccccc--c---cccccccccccccc-------------ccccccCceEE
Q 014621 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV--Q---VPIYDFKSSSRIGY-------------RTLEVPSSRIV 162 (421)
Q Consensus 105 ----~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i--~---~p~~~~~~~~~~~~-------------~~~~~~~qrVl 162 (421)
++.++|+||++.+++. ++.+|+.+....... . .........+..+. .......||+.
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHH
Confidence 3458999999998875 999999764211000 0 00000000011110 11112348999
Q ss_pred EeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 163 Iaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
|++++ ..+|.++++|||++++|+.....+. +++. +|.|+ .+.+.++||++++|++|++...+...
T Consensus 160 laral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 160 IARAI-----AVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHHHH-----hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 99999 8899999999999999998766555 4443 47777 67788999999999999998777665
Q ss_pred cE
Q 014621 234 HI 235 (421)
Q Consensus 234 Di 235 (421)
++
T Consensus 234 ~~ 235 (251)
T PRK14244 234 EI 235 (251)
T ss_pred HH
Confidence 55
No 208
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=2.5e-23 Score=188.52 Aligned_cols=187 Identities=17% Similarity=0.164 Sum_probs=142.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
++++.+.|+..+. ..++.++.|+ +++|+||||||||||++.|+|++ |.+|.|.++|.+.+ ++-++|+||
T Consensus 4 L~~V~~~y~~~~~--~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 4 LDDVRFSYGHLPM--RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccceEEeeCcceE--EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 4556677765433 3567789999 99999999999999999999999 99999999999764 467899999
Q ss_pred CCCCCccchHHHHHHhhhc-ccccc----cccccc-------ccccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKE-GKAVQ----VPIYDF-------KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~-~~~i~----~p~~~~-------~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
+.++|...||.+|+..... +-+.. ..+.+- ...++...+......|||.++|.+ .-...++++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl-----vR~~PilLL 153 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL-----VREQPILLL 153 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH-----hccCCeEEe
Confidence 9999999999999987532 11100 000000 011222222223345999999999 767789999
Q ss_pred EEEecCccHHHHHHHH---HHHH-HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 182 VSVTGGVHFDLVKRVF---RDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl~-~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|||.++|||.+...++ .++. +++.|+ .+.+.++++++.++.+|+|..++...|.+
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999866544 6665 458998 67789999999999999999999888874
No 209
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-23 Score=202.98 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=136.9
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. ..+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 4566666653 458999999999999 99999999999999999999999 89999999998753 24689
Q ss_pred cccCCCC-CCccchHHHHHHhhhcccccc-----ccc----cccccccccc---cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQ-----VPI----YDFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~-l~~~~tv~enl~~l~~~~~i~-----~p~----~~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++. .++..++.+|+.+........ ... ..+....... ........||+.|++++ ..+|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL-----ALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999985 566678888886642211000 000 0000000000 01111234899999999 9999
Q ss_pred ccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++|||++++|+...+.+ ++++.++ |.|+ .+.+.. ||+++++.+|++...++.+++
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 99999999999999977655 4666554 7787 455555 999999999999888776665
No 210
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.5e-23 Score=202.10 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=136.3
Q ss_pred eeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 456666663 4679999999999999 99999999999999999999999 89999999998753 34589
Q ss_pred cccCCCC-CCccchHHHHHHhhhcccccc---ccccccccccccc---------cccccccCceEEEeehhhhhhhccCC
Q 014621 110 GNFDDPR-LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 110 ~vfq~p~-l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|++|++. .+...|+.+|+.+........ .........+..+ .+......||+.|++++ ..+|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL-----ALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH-----HcCC
Confidence 9999984 566789999997642111000 0000000001111 01111234999999999 9999
Q ss_pred ccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++++|||+++||+...+.+. +++.++ |.|+ .+.+. +||++++|.+|++...+...++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 999999999999998766554 555554 4776 45554 7999999999999877665554
No 211
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.1e-23 Score=191.90 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=148.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Cccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~v 111 (421)
.+|++++..++.++++|||++.+|| +.+|+||||||||||+|.|+|.+ |++|++.++|.+... +.-+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 3678899899999999999999999 99999999999999999999999 999999999987642 345778
Q ss_pred cCCCCCCccchHHHHHHhhhcccc-cccccccc-------cccccccc------ccccccCceEEEeehhhhhhh-ccCC
Q 014621 112 FDDPRLTDYDTLLENIRGLKEGKA-VQVPIYDF-------KSSSRIGY------RTLEVPSSRIVIIEGIYALSE-KLRP 176 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~~~~-i~~p~~~~-------~~~~~~~~------~~~~~~~qrVlIaegl~~L~d-~l~p 176 (421)
+|+..+-...++.+.+.+.+.... -..|..+. ..-+..+. .....+.|||-++|.+--+.. ...+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 998876556789999988643211 01111111 00011110 011123589989998877774 5566
Q ss_pred ccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 177 LIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++++||||++||..... ++.|++.++|..+ .+...+|||+++.|++|++...+...|+.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 799999999999998654 5568998888766 78889999999999999999999887775
No 212
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.88 E-value=3.1e-23 Score=202.08 Aligned_cols=178 Identities=14% Similarity=0.228 Sum_probs=132.6
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCC--CCc
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR--LTD 119 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~--l~~ 119 (421)
..+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 579999999999999 99999999999999999999999 89999999998653 235899999985 456
Q ss_pred cchHHHHHHhhhc-cccccccc---ccccccccccc----------ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 120 YDTLLENIRGLKE-GKAVQVPI---YDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 120 ~~tv~enl~~l~~-~~~i~~p~---~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
..++.+++..... ........ .-....+..+. +......||+.|++++ ..+|.++++|||+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral-----~~~p~lllLDEPt 177 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL-----ILRPKVIIADEAL 177 (267)
T ss_pred chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHH-----HhCCCEEEEcCCc
Confidence 6788888765321 10000000 00000111110 1111234899999999 8999999999999
Q ss_pred cCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 186 GGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 186 s~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++|+...+.+ ++++.++ |.|+ .+.+..+||+++++.+|.+...+...++
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999876654 4566554 8777 7788899999999999999887766665
No 213
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.8e-23 Score=196.35 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=141.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq 113 (421)
.+++++.|+.. +++++||++.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.+.. ++.+++++|
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46777888654 8999999999999 99999999999999999999999 99999999998653 346899999
Q ss_pred CCCCCccchHHHHHHhhhccccccccccc---ccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYD---FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p~~~---~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++..++.+|+............... ....+..+. .......||+.|++++ ..+|.+.++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llll 153 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL-----VVNPKILLL 153 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHH-----HcCCCEEEE
Confidence 99999889999999754211100000000 000111110 1111234999999999 999999999
Q ss_pred EEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+.....+ ++++..+ |.|+ ++.+.++||++++|++|.+.+.+...++
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999876655 4565554 8887 6778899999999999999876654443
No 214
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7e-23 Score=197.44 Aligned_cols=186 Identities=13% Similarity=0.122 Sum_probs=138.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|+. | ++|.|.++|.+..
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 5678888887889999999999999 99999999999999999999985 3 4899999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccccc------cccc---c-ccc-------ccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ------VPIY---D-FKS-------SSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~------~p~~---~-~~~-------~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++ .++.+|+.......... .... + ... ......+......||+.|++++
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 246899999999888 69999997642110000 0000 0 000 0000001111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+...+.+. +++.+ +.|+ .+.+.++||+++.|.+|++...+...++
T Consensus 164 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 164 -----AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred -----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999776654 45543 4566 7788899999999999999877655554
No 215
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.8e-23 Score=201.85 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=139.8
Q ss_pred eeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
.+++++.|+. +.+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4567777752 469999999999999 99999999999999999999999 89999999998753 3458
Q ss_pred ccccCCCC-CCccchHHHHHHhhhccccccccc-cc--cccccccc---------cccccccCceEEEeehhhhhhhccC
Q 014621 109 DGNFDDPR-LTDYDTLLENIRGLKEGKAVQVPI-YD--FKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 109 g~vfq~p~-l~~~~tv~enl~~l~~~~~i~~p~-~~--~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
+|+||++. .+...++.+|+.+........... .. .......+ .+......||+.|++++ ..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL-----~~~ 158 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII-----ALR 158 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 99999985 566789999997642211100000 00 00000011 01111234999999999 999
Q ss_pred CccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|.++++|||++++|+...+.+. +++.++ |.|+ .+.+. .||++++|++|++...+...++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999776554 556554 8887 56665 59999999999999888776663
No 216
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.88 E-value=8.7e-23 Score=184.88 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=117.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC--------Ccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~--------~~ig~ 110 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.+... +.++|
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 4678888888889999999999999 99999999999999999999999 899999999976431 12333
Q ss_pred ccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~ 190 (421)
+|| .+++ ..||+.+++++ ...|.+.++|||++++|+
T Consensus 80 ~~q----------------------------------LS~G-----~~qrl~laral-----~~~p~illlDEP~~~LD~ 115 (163)
T cd03216 80 VYQ----------------------------------LSVG-----ERQMVEIARAL-----ARNARLLILDEPTAALTP 115 (163)
T ss_pred EEe----------------------------------cCHH-----HHHHHHHHHHH-----hcCCCEEEEECCCcCCCH
Confidence 332 2222 24789999999 899999999999999999
Q ss_pred HHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 191 DLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 191 ~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
...+.+. ++++++|.|+ .+.+.++||+++.+++|++..
T Consensus 116 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 116 AEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 8766554 6665567777 677889999999999998864
No 217
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.88 E-value=6.4e-23 Score=200.03 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=139.3
Q ss_pred eeeeEEEeC---------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----
Q 014621 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (421)
Q Consensus 40 ~~~ls~~~g---------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----- 104 (421)
.+++++.|+ +..+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|....
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 355666664 4789999999999999 99999999999999999999998 89999999998642
Q ss_pred -----CCccccccCCCC--CCccchHHHHHHhhhcc-cccc---c--cc------cccc--cccccccccccccCceEEE
Q 014621 105 -----SRIIDGNFDDPR--LTDYDTLLENIRGLKEG-KAVQ---V--PI------YDFK--SSSRIGYRTLEVPSSRIVI 163 (421)
Q Consensus 105 -----~~~ig~vfq~p~--l~~~~tv~enl~~l~~~-~~i~---~--p~------~~~~--~~~~~~~~~~~~~~qrVlI 163 (421)
++.++|++|++. +++..++.+++...... .... . .. ..+. ..............||+.|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 346899999983 45667888887542110 0000 0 00 0000 0000001111223489999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++++ ..+|.++++|||+++||+..... +++++.++ |.|+ .+.+..+||+++.+.+|++...++..
T Consensus 163 aral-----~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 163 ARAL-----AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHH-----hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 9999 99999999999999999986554 45666554 7777 77888999999999999999888877
Q ss_pred cEE
Q 014621 234 HIK 236 (421)
Q Consensus 234 Dii 236 (421)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 763
No 218
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=8e-23 Score=194.22 Aligned_cols=191 Identities=16% Similarity=0.044 Sum_probs=136.1
Q ss_pred eeecCcceecCe---------eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeE
Q 014621 26 VKKKDSDRYEIV---------PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV 95 (421)
Q Consensus 26 ~~~~~~~~y~~~---------~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~ 95 (421)
+.++.++.|..- -..++++..|+.+.+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 78 (224)
T cd03220 2 ELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78 (224)
T ss_pred ceeecceeccccccCcchhhhhhhhhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 456667777421 135678889999999999999999999 99999999999999999999999 89999
Q ss_pred EEECCeecCCCccccccCCCCCCccchHHHHHHhhhccccccccc---cccccccccc---------cccccccCceEEE
Q 014621 96 ITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI---YDFKSSSRIG---------YRTLEVPSSRIVI 163 (421)
Q Consensus 96 I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~---~~~~~~~~~~---------~~~~~~~~qrVlI 163 (421)
|.++|.+..... ....+.+..|+.+|+............. ......+..+ ........||+.|
T Consensus 79 i~~~g~~~~~~~-----~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 153 (224)
T cd03220 79 VTVRGRVSSLLG-----LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAF 153 (224)
T ss_pred EEECCEEchhhc-----ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 999998643111 1223445678999987643211000000 0000000001 0111123489999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
++++ ...|.+.++|||++++|+...+.+. +++.++|.|+ .+.+..+||+++++.+|++...
T Consensus 154 aral-----~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 154 AIAT-----ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999 8899999999999999998766554 5555567777 6778899999999999998653
No 219
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.88 E-value=1.1e-22 Score=196.74 Aligned_cols=187 Identities=13% Similarity=0.174 Sum_probs=136.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-----CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p----~~G~I~~Dg~~~~-----~~~ig 109 (421)
.+++++.| +..+++++||++.+|+ +++|+|+||||||||+++|+|++ | +.|.|.++|.+.. ++.++
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 45667777 4579999999999999 99999999999999999999999 7 8999999998653 24689
Q ss_pred cccCCCC--CCccchHHHHHHhhhc--cccccc-c------cccccc----ccccccccccccCceEEEeehhhhhhhcc
Q 014621 110 GNFDDPR--LTDYDTLLENIRGLKE--GKAVQV-P------IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 110 ~vfq~p~--l~~~~tv~enl~~l~~--~~~i~~-p------~~~~~~----~~~~~~~~~~~~~qrVlIaegl~~L~d~l 174 (421)
|++|++. +.+..++.+++..... +..... . ...... .............||+.|++++ ..
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral-----~~ 157 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL-----LC 157 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH-----hc
Confidence 9999985 3344677777654211 110000 0 001000 0000001112234999999999 99
Q ss_pred CCccceEEEEecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+|.++++|||++++|+...+.+ ++++.++ |.|+ .+.+..+||+++++.+|++...++..++
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999876554 4666544 7787 6778889999999999999887776665
No 220
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.88 E-value=3e-23 Score=198.07 Aligned_cols=186 Identities=17% Similarity=0.236 Sum_probs=136.6
Q ss_pred eeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 356777775 3679999999999999 99999999999999999999999 89999999998643 34689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc--cc---cccc-ccccc-----------ccccccccCceEEEeehhhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV--PI---YDFK-SSSRI-----------GYRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~--p~---~~~~-~~~~~-----------~~~~~~~~~qrVlIaegl~~L~d 172 (421)
|++|++.+++ .|+.+|+........... .. .... ..... .........||+.|++++
T Consensus 80 ~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral----- 153 (237)
T cd03252 80 VVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL----- 153 (237)
T ss_pred EEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH-----
Confidence 9999998775 699999976422110000 00 0000 00000 001111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++|||++++|+.....+.+.+.+ +|.|+ .+.+. .||+++++++|++...++..++
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence 899999999999999999987766543332 47777 55565 5999999999999877766555
No 221
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=4.7e-23 Score=221.38 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=146.4
Q ss_pred eeeeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccc
Q 014621 38 PIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 38 ~v~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig 109 (421)
-..++++|.| ++..+|+++||++++|+ .++|+|+||||||||++.|+|+.|++|.|.+||.++. ++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE
Confidence 4577888654 56789999999999999 9999999999999999999999999999999998764 46799
Q ss_pred cccCCCCCCccchHHHHHHhhhccc---ccccc---------ccccc--ccccccc---ccccccCceEEEeehhhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGK---AVQVP---------IYDFK--SSSRIGY---RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~---~i~~p---------~~~~~--~~~~~~~---~~~~~~~qrVlIaegl~~L~d 172 (421)
|++|+|.+|+ .|+++||....... .+... ...+. ....++. .......||+.|||++
T Consensus 427 ~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl----- 500 (588)
T PRK11174 427 WVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL----- 500 (588)
T ss_pred EecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH-----
Confidence 9999999987 59999998753211 00000 00000 0111111 1122245999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|..+.+++.+.+.+ +++|+ .+.+. .+|+++++++|++.+.|.+.++.
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHH
Confidence 889999999999999999999988876654 46776 45444 59999999999999999888875
No 222
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.1e-23 Score=199.29 Aligned_cols=186 Identities=16% Similarity=0.116 Sum_probs=140.0
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 5678888877789999999999999 99999999999999999999997 3 6999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccc------ccc----ccccc----cccc---cccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV------PIY----DFKSS----SRIG---YRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~------p~~----~~~~~----~~~~---~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++. |+.+|+........... ... .+... .... ........||+.|++++
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 3468999999998875 99999975321100000 000 00000 0000 01111234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+.....+. +++++ +.|+ .+.+.++||++++|++|++...+...++
T Consensus 184 -----~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 184 -----AIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred -----HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999999766554 55544 6666 6778899999999999999887776665
No 223
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.88 E-value=7.9e-23 Score=194.11 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=136.7
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC----CCc
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRI 107 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~----~~~ 107 (421)
.+++++.+.. +.+++++||++++|+ +++|+||||||||||+++|+|+++ ++|.|.++|.+.. ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 5677777743 689999999999999 999999999999999999999974 7999999998653 456
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc--c-cccc---ccccc-ccccccc---------ccccccCceEEEeehhhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK--A-VQVP---IYDFK-SSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~--~-i~~p---~~~~~-~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
+++++|++.+++..|+.+|+.+..... . .... ..... .....+. .......||+.|++++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral---- 158 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL---- 158 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH----
Confidence 899999999999899999998642110 0 0000 00000 0111110 1111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------H-HHHHHHhceEEEccCcEEeec
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------E-EIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~-~vi~~~~d~V~~m~~g~I~p~ 229 (421)
..+|.++++|||++++|+.....+ ++++.++|.|+ . +.+.++||++++|++|++...
T Consensus 159 -~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 159 -LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred -HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 889999999999999999876655 45665567776 3 578899999999999998754
No 224
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=5.9e-23 Score=192.30 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. ..+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4667777753 479999999999999 99999999999999999999999 89999999998652 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
|++|++.+++ .++.+|+........ .....................||+.+++++ ..+|.++++|||++++|
T Consensus 86 ~v~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~l~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEP~~~LD 157 (207)
T cd03369 86 IIPQDPTLFS-GTIRSNLDPFDEYSD--EEIYGALRVSEGGLNLSQGQRQLLCLARAL-----LKRPRVLVLDEATASID 157 (207)
T ss_pred EEecCCcccC-ccHHHHhcccCCCCH--HHHHHHhhccCCCCcCCHHHHHHHHHHHHH-----hhCCCEEEEeCCcccCC
Confidence 9999998886 599999965321000 000000000000011111234899999999 88999999999999999
Q ss_pred HHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 190 FDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 190 ~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
+....++.+-+.+ +|.|+ .+.+.. ||++++|++|.+...+
T Consensus 158 ~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 158 YATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 9987665543332 37776 555655 8999999999987654
No 225
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.88 E-value=9.4e-23 Score=192.82 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=133.3
Q ss_pred eeeeEEEeCc----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g~----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+. ..+++++||.+.+|+ +++|+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 4567777753 789999999999999 99999999999999999999999 89999999998653
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccc-cccccc---ccccccccccc---------ccccccCceEEEeehhhhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI---YDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~-~i~~p~---~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|++|++.+++..|+.+|+.+..... ...... .-....+..+. +......||+.+++++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral---- 156 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL---- 156 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH----
Confidence 246899999999998889999998643211 100000 00000111111 1111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..+|.++++|||++++|+.....+. +++.+ .|.|+ ++. ..+||+++.|++|++
T Consensus 157 -~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 -VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred -hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 9999999999999999999866554 55554 37777 554 479999999999875
No 226
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.4e-23 Score=202.38 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=137.3
Q ss_pred eeeeEEEeC------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------
Q 014621 40 EDTLSFEKG------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 40 ~~~ls~~~g------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------- 104 (421)
.+++++.|+ .+.+|+++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||.+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 456666664 2569999999999999 99999999999999999999999 89999999998653
Q ss_pred CCccccccCCCC-CCccchHHHHHHhhhcccccc---ccccccccccccc---------cccccccCceEEEeehhhhhh
Q 014621 105 SRIIDGNFDDPR-LTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 ~~~ig~vfq~p~-l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|+||+|. .+...++.+|+.+........ ....-....+..+ .+......||+.|++++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral---- 159 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL---- 159 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH----
Confidence 345899999985 233468899987642211000 0000000000111 01111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
...|.++++|||+++||+.....+. +++++ +|.|+ ++.+.. ||+++++++|.+...++..++.
T Consensus 160 -~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 160 -AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred -HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999766554 66655 48887 566665 9999999999998888777663
No 227
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.88 E-value=2.3e-23 Score=228.44 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=147.1
Q ss_pred eeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
--.++++|.|+ +..+|+|+||++++|+ .+||+|+||||||||++.|+|+. |++|.|.+||.++. ++.+
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 45689999996 4689999999999999 99999999999999999999999 99999999998753 4679
Q ss_pred ccccCCCCCCccchHHHHHHhhh-ccc---cccc-----cccc----cc--cccccc---cccccccCceEEEeehhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLK-EGK---AVQV-----PIYD----FK--SSSRIG---YRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~-~~~---~i~~-----p~~~----~~--~~~~~~---~~~~~~~~qrVlIaegl~~L 170 (421)
+|++|++.+|+ .|+++||.... ... .+.. ...+ +. .....+ ........||+.|||++
T Consensus 551 ~~v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal--- 626 (708)
T TIGR01193 551 NYLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL--- 626 (708)
T ss_pred EEEecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH---
Confidence 99999999986 49999998752 110 0000 0000 00 001111 11122245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH-cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+..++.+.+.+ +|+|+ .+.+ +.||++++|++|++.+.+.+++++
T Consensus 627 --l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 627 --LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred --hhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999998888766654 47776 4544 569999999999999999888874
No 228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.8e-23 Score=186.68 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=122.8
Q ss_pred eeeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+.. .+++++||++++|+ +++|+||||||||||+++|+|++ |..|.|.++|.... ++.++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 35677777654 79999999999999 99999999999999999999999 89999999998653 24589
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
++||++.+++ .++.+|+ .+++ ..||+.+++++ ..+|.++++|||++++|
T Consensus 80 ~~~~~~~~~~-~t~~e~l--------------------LS~G-----~~~rl~la~al-----~~~p~llllDEP~~gLD 128 (171)
T cd03228 80 YVPQDPFLFS-GTIRENI--------------------LSGG-----QRQRIAIARAL-----LRDPPILILDEATSALD 128 (171)
T ss_pred EEcCCchhcc-chHHHHh--------------------hCHH-----HHHHHHHHHHH-----hcCCCEEEEECCCcCCC
Confidence 9999998776 5888887 2222 24788999999 89999999999999999
Q ss_pred HHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCc
Q 014621 190 FDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 190 ~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+.....+.+-+.+ ++.|+ ++.+.. ||+++.+++|
T Consensus 129 ~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 129 PETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 9877665543332 36666 566666 9999999876
No 229
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.1e-23 Score=197.78 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=145.0
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-----------CCCccccccCCCCCCccch
Q 014621 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDPRLTDYDT 122 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~-----------~~~~ig~vfq~p~l~~~~t 122 (421)
+++|..+... +++|-|+||||||||+|+|+|+. |+.|.|.+||.-+ .++++||+||+..+|+.+|
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 5677777767 99999999999999999999999 9999999999843 1577999999999999999
Q ss_pred HHHHHHhhhccccc-cc----------cccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014621 123 LLENIRGLKEGKAV-QV----------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 123 v~enl~~l~~~~~i-~~----------p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
|+.|+.+....... +. +..+..+...+| .++|||.|.||+ ...|.++++|||-++||..
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSG-----GEkQRVAIGRAL-----Lt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSG-----GEKQRVAIGRAL-----LTAPELLLMDEPLASLDLP 162 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCc-----chhhHHHHHHHH-----hcCCCeeeecCchhhcccc
Confidence 99999986532210 00 111222223333 345999999999 8899999999999999998
Q ss_pred HHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCcccccCC
Q 014621 192 LVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNP 250 (421)
Q Consensus 192 ~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p 250 (421)
..++++ .++.++ ..-| ++.+.+.+|+|.+|++|++...++.+++.-...+.|+....+.
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~p~~~~~e~ 231 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQ 231 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccCcccCcccc
Confidence 877776 556554 4444 7888999999999999999999999999754457777666544
No 230
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=2.7e-23 Score=198.54 Aligned_cols=185 Identities=21% Similarity=0.207 Sum_probs=135.4
Q ss_pred eeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 3567777752 569999999999999 99999999999999999999999 89999999997653 2458
Q ss_pred ccccCCCCCCccchHHHHHHhhhccccccc--------ccccccc------ccccc---cccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQV--------PIYDFKS------SSRIG---YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~i~~--------p~~~~~~------~~~~~---~~~~~~~~qrVlIaegl~~L~ 171 (421)
+|++|++.+++ .|+.+|+........... ...++.. ..... .+......||+.|++++
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al---- 154 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL---- 154 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH----
Confidence 99999998776 699999976422110000 0000000 00000 01111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++|||++++|+....++. +++. +|.++ .+.+. +||+++++.+|.+...++.+++
T Consensus 155 -~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 155 -LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred -hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999999999776655 4444 57776 55666 8999999999999776655444
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=7e-23 Score=217.65 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=141.0
Q ss_pred eeeeEEEeC-----------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC----
Q 014621 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---- 104 (421)
Q Consensus 40 ~~~ls~~~g-----------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~---- 104 (421)
.+++++.|+ .+.+|+++||++++|+ ++||+|+||||||||+++|+|++|++|.|.++|.++.
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 456666663 3679999999999999 9999999999999999999999988999999997642
Q ss_pred ------CCccccccCCCC--CCccchHHHHHHhhhc-c-cccc---cccccccccccccc----------ccccccCceE
Q 014621 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLKE-G-KAVQ---VPIYDFKSSSRIGY----------RTLEVPSSRI 161 (421)
Q Consensus 105 ------~~~ig~vfq~p~--l~~~~tv~enl~~l~~-~-~~i~---~p~~~~~~~~~~~~----------~~~~~~~qrV 161 (421)
++.++|+||++. +++..++.+|+.+... . .... .........+..+. +......||+
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 245899999983 7777899999976421 0 0000 00000000011110 1111234999
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
.|++++ ...|.++++||||+++|+...+.+. ++++++ |.|+ ++.+.++||++++|++|++...+.
T Consensus 435 ~la~al-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 435 AIARAL-----ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHH-----hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 999999 8999999999999999999776554 666554 8887 788889999999999999988877
Q ss_pred cccE
Q 014621 232 TAHI 235 (421)
Q Consensus 232 ~aDi 235 (421)
..++
T Consensus 510 ~~~~ 513 (529)
T PRK15134 510 CERV 513 (529)
T ss_pred HHHH
Confidence 6666
No 232
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.2e-22 Score=191.58 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=131.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq~ 114 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.... ++.++|++|+
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 4667777777789999999999999 99999999999999999999999 89999999998654 2358999999
Q ss_pred CCCCccchHHHHHHhhhc--cccccccccc----ccccccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 115 PRLTDYDTLLENIRGLKE--GKAVQVPIYD----FKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~--~~~i~~p~~~----~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+.+++..++.+|+..... +......... +........ .......||+.+++++ ..+|.++++|||+
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEPt 165 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW-----LSPAPLWLLDEPY 165 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCc
Confidence 988888899999876432 1100000000 000000000 1111234899999999 9999999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc
Q 014621 186 GGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~ 222 (421)
+++|+...+.+. +++.++|.|+ .+.+.++|++++.+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999766554 5555567777 788899999988774
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=6.4e-23 Score=193.54 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=130.6
Q ss_pred eeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+. +.+++++||++++|+ ++||+||||||||||+++|+|+. |++|.|.++|.... ++.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 4667777754 579999999999999 99999999999999999999999 89999999998642 24689
Q ss_pred cccCCCCCCccchHHHHHHhhhccc---ccccc--cccccc-cccc-----------ccccccccCceEEEeehhhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGK---AVQVP--IYDFKS-SSRI-----------GYRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~---~i~~p--~~~~~~-~~~~-----------~~~~~~~~~qrVlIaegl~~L~d 172 (421)
|++|++.+++ .++.+|+....... .+... ...... .... .........||+.|++++
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al----- 155 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL----- 155 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH-----
Confidence 9999998886 69999987532110 00000 000000 0000 001111234999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
...|.++++||||++||+.....+.+-+.+ ++.|+ .+.+ ++||+++.+++|.+..
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 899999999999999999987766544432 23555 5555 6999999999998854
No 234
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=4.5e-23 Score=202.08 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=140.9
Q ss_pred eeeeeEEEe--CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccc
Q 014621 39 IEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~--g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig 109 (421)
-.+++++.| +...+|+++||+|++|+ ++||+|+||||||||+++|+|+++..|.|.+||.+.. ++.++
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence 367888888 45679999999999999 9999999999999999999999977899999998753 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhcc--cccccc--cccccc--cccc----------ccccccccCceEEEeehhhhhhhc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEG--KAVQVP--IYDFKS--SSRI----------GYRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~--~~i~~p--~~~~~~--~~~~----------~~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
|++|++.+++ .|+.+|+...... ..+... ...... .... +........||+.+++++ .
T Consensus 81 ~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal-----l 154 (275)
T cd03289 81 VIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV-----L 154 (275)
T ss_pred EECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH-----h
Confidence 9999999987 5999999642110 000000 000000 0000 000111234999999999 8
Q ss_pred cCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+|.++++|||++++|+...+.+.+.+.+ .|.|+ .+.+.. ||++++|++|++.+.+...+++
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHh
Confidence 99999999999999999987766655543 37777 555554 9999999999999999888874
No 235
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=6e-23 Score=195.74 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=131.6
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC--CccccccCCCCCCccchHHHHHHh
Q 014621 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~--~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+... ...+|++|++.+++..|+.+|+..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 478999999999 99999999999999999999999 899999999987642 235899999999988999999976
Q ss_pred hhcc--ccccc-cccc--cccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHH
Q 014621 130 LKEG--KAVQV-PIYD--FKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR 195 (421)
Q Consensus 130 l~~~--~~i~~-p~~~--~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rr 195 (421)
.... ..... .... .......+ .+......||+.|++++ ..+|.++++||||+++|+...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL-----SIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH-----HcCCCEEEEcCCCcCCCHHHHHH
Confidence 4210 00000 0000 00001111 01111234999999999 99999999999999999997766
Q ss_pred HH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 196 VF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 196 Il---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+. +++.++ |.|+ ++.+.++||++++|.+|.+...++..++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 54 555544 7777 7778999999999999999887765544
No 236
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.88 E-value=3.8e-23 Score=221.68 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=146.2
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|++ ..+|+++||++++|+ .++|+|+||||||||+++|+|++ |++|.|.+||.+.. ++.
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 457789999853 679999999999999 99999999999999999999999 99999999998754 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc----ccccc---------ccccc--ccccccc---ccccccCceEEEeehhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK----AVQVP---------IYDFK--SSSRIGY---RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~----~i~~p---------~~~~~--~~~~~~~---~~~~~~~qrVlIaegl~~ 169 (421)
++|++|++.+|+ .|+++||....... .+... ...+. .....+. .......||+.|||++
T Consensus 419 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal-- 495 (582)
T PRK11176 419 VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL-- 495 (582)
T ss_pred ceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH--
Confidence 999999999987 69999998743210 00000 00000 0111111 1122245999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+..++.+.+.+ +++|+ .+.+ +.||+|+++++|++.+.+.+++++
T Consensus 496 ---l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 496 ---LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred ---HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 889999999999999999999888877655 36776 4444 459999999999999999888774
No 237
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.88 E-value=1.5e-22 Score=183.88 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=124.6
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+++. +.++|++|++.+
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~ 75 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYL 75 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCcc
Confidence 467777774 4679999999999999 99999999999999999999998 89999999874 578999999876
Q ss_pred CccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH
Q 014621 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF 197 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl 197 (421)
+ ..|+.+|+... .....++ ...||+.+++++ ..+|.++++|||++++|+...+++.
T Consensus 76 ~-~~tv~~nl~~~-------------~~~~LS~-----G~~~rv~laral-----~~~p~~lllDEPt~~LD~~~~~~l~ 131 (166)
T cd03223 76 P-LGTLREQLIYP-------------WDDVLSG-----GEQQRLAFARLL-----LHKPKFVFLDEATSALDEESEDRLY 131 (166)
T ss_pred c-cccHHHHhhcc-------------CCCCCCH-----HHHHHHHHHHHH-----HcCCCEEEEECCccccCHHHHHHHH
Confidence 5 56999998752 1122223 234899999999 8999999999999999999888777
Q ss_pred HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 198 RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 198 rdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+-+.+.+.|+ .+.. .+||+++.++++
T Consensus 132 ~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 132 QLLKELGITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred HHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 6665556666 4444 589999888765
No 238
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=195.98 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=139.9
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
..+..++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 10 ~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred EEEeEEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 34556777888899999999999999 99999999999999999999998 5 6999999998652
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhcccccc----ccc------ccccc--ccccc---cccccccCceEEEeehhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ----VPI------YDFKS--SSRIG---YRTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~----~p~------~~~~~--~~~~~---~~~~~~~~qrVlIaegl~ 168 (421)
++.++|+||++.++ ..++.+|+.+........ ... ..... ..... ........||+.|++++
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral- 164 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI- 164 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH-
Confidence 24589999999888 489999997643210000 000 00000 00000 01111234899999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEcc--------CcEEeecCCc
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMY--------KAFIEPDLQT 232 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~--------~g~I~p~~~~ 232 (421)
..+|.++++|||++++|+....++.+-+.+ ++.|+ .+.+.++||++++|+ +|++...+..
T Consensus 165 ----~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 165 ----ATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred ----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 889999999999999999987666543332 36676 777889999999996 8999888877
Q ss_pred ccE
Q 014621 233 AHI 235 (421)
Q Consensus 233 aDi 235 (421)
.++
T Consensus 241 ~~~ 243 (261)
T PRK14263 241 AQI 243 (261)
T ss_pred HHH
Confidence 765
No 239
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=196.16 Aligned_cols=187 Identities=15% Similarity=0.089 Sum_probs=139.8
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.+..
T Consensus 9 ~~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 9 KVKDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 35778888887889999999999999 99999999999999999999998 4 4899999998652
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccc------cccccccc----ccc-------ccccccccccccCceEEEeeh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK------AVQVPIYD----FKS-------SSRIGYRTLEVPSSRIVIIEG 166 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~------~i~~p~~~----~~~-------~~~~~~~~~~~~~qrVlIaeg 166 (421)
++.++|++|++.+++ .|+.+|+....... ........ ... .............||+.|+++
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 235899999999887 89999997542100 00000000 000 000000111223489999999
Q ss_pred hhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc-----CcEEeecCCc
Q 014621 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY-----KAFIEPDLQT 232 (421)
Q Consensus 167 l~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~-----~g~I~p~~~~ 232 (421)
+ ...|.++++||||+++|+.....+. +++.+ +.|+ ++.+.++||++++|+ +|++...++.
T Consensus 165 l-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 165 L-----AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred H-----hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 9 8999999999999999998766555 44433 5676 788899999999997 5999888777
Q ss_pred ccE
Q 014621 233 AHI 235 (421)
Q Consensus 233 aDi 235 (421)
.++
T Consensus 239 ~~~ 241 (259)
T PRK14260 239 TQI 241 (259)
T ss_pred HHH
Confidence 765
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.7e-23 Score=195.62 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=135.5
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.|+. ..+++++||++++|+ +++|+||||||||||+++|+|++ |.+|.|.++|.+.. ++.++|
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 5677888864 579999999999999 99999999999999999999999 89999999998653 345899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc---ccc--cccccc-ccccc-----------ccccccccCceEEEeehhhhhhhc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA---VQV--PIYDFK-SSSRI-----------GYRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~---i~~--p~~~~~-~~~~~-----------~~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
++|++.+++. ++.+|+........ ... ...... ..+.. ..+......||+.|++++ .
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al-----~ 155 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM-----L 155 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH-----h
Confidence 9999988775 99999976432110 000 000000 00000 001111234999999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.+|.++++|||+++||+.....+. +++. +|.|+ .+.+. .||+++.|.+|.+...+...++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999998776555 4443 47777 55555 4999999999999766554443
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=196.47 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=139.3
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ | ++|.|.++|....
T Consensus 18 ~~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 18 EVNKLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 45788888887889999999999999 99999999999999999999998 4 6899999986431
Q ss_pred ---CCccccccCCCCCCccchHHHHHHhhhcccccc------ccccc----cccc----cccc---cccccccCceEEEe
Q 014621 105 ---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ------VPIYD----FKSS----SRIG---YRTLEVPSSRIVII 164 (421)
Q Consensus 105 ---~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~------~p~~~----~~~~----~~~~---~~~~~~~~qrVlIa 164 (421)
++.++|++|++.+++. ++.+|+.......... ..... .... .... ........||+.|+
T Consensus 95 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 3458999999998885 9999997542110000 00000 0000 0000 01111234899999
Q ss_pred ehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 165 egl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+++ ..+|.+.++|||++++|+.....+. +++++ +.|+ .+.+.++||+++++.+|++...+...++
T Consensus 174 ral-----~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 174 RAL-----ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHH-----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999 8999999999999999999766554 44443 5666 7778899999999999999887766555
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.9e-22 Score=194.14 Aligned_cols=186 Identities=14% Similarity=0.123 Sum_probs=139.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.+||.++.
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5677888877889999999999999 99999999999999999999985 3 7899999998753
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccc------ccccc------cccc-----cccccccccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------VQVPI------YDFK-----SSSRIGYRTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~------i~~p~------~~~~-----~~~~~~~~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++. ++.+|+........ ..... .... ..............||+.|++++
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 2458999999998874 99999975421110 00000 0000 00000011112234999999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||++++|+.....+. ++++ +|.|+ .+.+.++||++.+|++|.+...+...++
T Consensus 162 -----~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 162 -----AVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred -----HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 8999999999999999998766554 4553 36676 7788999999999999999887766555
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.2e-23 Score=195.65 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=136.2
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 467778884 5679999999999999 99999999999999999999999 89999999998653 245899
Q ss_pred ccCCCCCCccchHHHHHHhhhcccc---ccc--cccccc-ccccc--c---------cccccccCceEEEeehhhhhhhc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGKA---VQV--PIYDFK-SSSRI--G---------YRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~~---i~~--p~~~~~-~~~~~--~---------~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
++|++.+++ .|+.+|+.+...... ... ...... ..... + ........||+.|++++ .
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL-----~ 153 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI-----L 153 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH-----h
Confidence 999998885 699999976432110 000 000000 00000 0 01111234899999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.+|.++++|||++++|+.....+. +++++ |.|+ .+.+.. ||+++.|++|.+...+...++
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence 999999999999999999876655 44444 7776 555654 999999999999776655444
No 244
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.87 E-value=1.4e-22 Score=192.57 Aligned_cols=171 Identities=15% Similarity=0.208 Sum_probs=127.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+++++||++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 4566677777789999999999999 99999999999999999999998 89999999998653 2468999
Q ss_pred cCCCCCCccchHHHHHHhhhc--ccc-cccccccccccccccc----------ccccccCceEEEeehhhhhhhccCCcc
Q 014621 112 FDDPRLTDYDTLLENIRGLKE--GKA-VQVPIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~--~~~-i~~p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
||++.+++ .++.+|+.+... +.. ...... ...+..+. +......||+.|++++ ..+|.+
T Consensus 87 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral-----~~~p~l 158 (225)
T PRK10247 87 AQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFL--DDLERFALPDTILTKNIAELSGGEKQRISLIRNL-----QFMPKV 158 (225)
T ss_pred eccccccc-ccHHHHHHhHHhhcCCChHHHHHH--HHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH-----hcCCCE
Confidence 99998887 499999975321 100 000000 00111110 1111234899999999 899999
Q ss_pred ceEEEEecCccHHHHHHH---HHHHHH-cCCCH------HHHHHHHhceEEEcc
Q 014621 179 DLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrI---lrdl~~-~G~ti------~~vi~~~~d~V~~m~ 222 (421)
+++|||++++|+...+.+ ++++.+ +|.|+ .+.+. +||+++.+.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 999999999999876654 456654 37776 55665 699999994
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=1.6e-22 Score=214.33 Aligned_cols=186 Identities=18% Similarity=0.177 Sum_probs=139.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEEC-----------------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMD----------------- 99 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I~~D----------------- 99 (421)
.+++++.|+.+.+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4678888888889999999999999 99999999999999999999995 889999987
Q ss_pred ------Ceec-----------------CCCccccccCC-CCCCccchHHHHHHhhhcccccc-----ccccccccccccc
Q 014621 100 ------NYND-----------------SSRIIDGNFDD-PRLTDYDTLLENIRGLKEGKAVQ-----VPIYDFKSSSRIG 150 (421)
Q Consensus 100 ------g~~~-----------------~~~~ig~vfq~-p~l~~~~tv~enl~~l~~~~~i~-----~p~~~~~~~~~~~ 150 (421)
|.+. .++.++|+||+ +.+++..++.+|+.+........ ..... .....+
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~g 157 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD--LIEMVQ 157 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHcC
Confidence 2111 12458999997 67888889999997643211000 00000 001111
Q ss_pred c---------ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHH-cCCCH------HHHH
Q 014621 151 Y---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQR-VGQEP------EEII 211 (421)
Q Consensus 151 ~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~-~G~ti------~~vi 211 (421)
. +......|||.||+++ ..+|.++++||||++||+....++ ++++.+ .|.|+ .+.+
T Consensus 158 l~~~~~~~~~~LSgGq~qrv~iA~al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQL-----AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred ChhhhhcCcccCCHHHHHHHHHHHHH-----hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 0 1111234999999999 999999999999999999987766 466654 48887 7788
Q ss_pred HHHhceEEEccCcEEeecCCcccE
Q 014621 212 HQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 212 ~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.++||+++.|++|++...+...++
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHH
Confidence 899999999999999776655444
No 246
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.87 E-value=9.9e-23 Score=223.59 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=145.9
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
.-.++++|.|+. ..+|+|+||++++|+ .++|+|+||||||||++.|.|+. |++|.|.+||.++. ++
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 467889999953 579999999999999 99999999999999999999999 99999999998754 45
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc---cccc-----ccc----ccc--ccccccc---ccccccCceEEEeehhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----PIY----DFK--SSSRIGY---RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~~-----p~~----~~~--~~~~~~~---~~~~~~~qrVlIaegl~~ 169 (421)
.+++++|+|.+|+ .|+++||....... .+.. ... .+. .....+. .......||+.|||++
T Consensus 556 ~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL-- 632 (711)
T TIGR00958 556 QVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL-- 632 (711)
T ss_pred hceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH--
Confidence 7999999999886 79999998753211 0000 000 000 0011111 1122345999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+...+.+....+++|+ .+.+ +.+|+|+++++|+|.+.|.+.++.
T Consensus 633 ---l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 633 ---VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred ---hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEeeCHHHHH
Confidence 88999999999999999998888776333357787 5554 459999999999999999888874
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.87 E-value=2.9e-22 Score=193.04 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=137.4
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecCC------C--cc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS------R--II 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~~------~--~i 108 (421)
.+++++.|++..+|+++||++++|+ ++||+|+||||||||+++|+|+ + |+.|.|.++|.+... . .+
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 5667777777789999999999999 9999999999999999999998 4 789999999986531 1 36
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc----ccc-ccc--c-c--ccccccccc-------c----cccccCceEEEeehh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK----AVQ-VPI--Y-D--FKSSSRIGY-------R----TLEVPSSRIVIIEGI 167 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~----~i~-~p~--~-~--~~~~~~~~~-------~----~~~~~~qrVlIaegl 167 (421)
++++|++.+++..++.+++....... ... ... + . .......+. . ......||+.|++++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 78999999988888888886532110 000 000 0 0 000010010 0 111224899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEeecCCcc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~~~a 233 (421)
..+|.+.++|||++++|+...+.+. +++.++|.|+ .+.+..+ ||+++.|++|++...+...
T Consensus 167 -----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 167 -----LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred -----HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 8999999999999999999776554 5665568887 6667776 8999999999998776554
No 248
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=1.4e-22 Score=218.00 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=145.4
Q ss_pred eeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
--.++++|.|+. ..+|+++||++++|+ .+||+|+||||||||+++|+|+. |++|.|.+||.++. ++.+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 346789999853 679999999999999 99999999999999999999999 99999999998764 4679
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc--ccccc---------ccccc--cccccc---cccccccCceEEEeehhhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK--AVQVP---------IYDFK--SSSRIG---YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~--~i~~p---------~~~~~--~~~~~~---~~~~~~~~qrVlIaegl~~L~d 172 (421)
+|++|+|.+|+. |+++||....... .+... ...+. .....+ ........||+.|||++
T Consensus 418 ~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaL----- 491 (592)
T PRK10790 418 AMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVL----- 491 (592)
T ss_pred EEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH-----
Confidence 999999999984 9999998753110 00000 00000 000111 11112245999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +++|+ .+.+. .||+|++|++|++.+.|.+.++.
T Consensus 492 l~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 789999999999999999998888766654 35666 44444 59999999999999999988874
No 249
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.6e-22 Score=213.32 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=140.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+++. ..++|++|++.++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~~ 76 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFAF 76 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCcC
Confidence 4678888888889999999999999 99999999999999999999999 89999999873 4589999999888
Q ss_pred ccchHHHHHHhhhccc--------c-ccccc---------------------ccc-----cccccccc----------cc
Q 014621 119 DYDTLLENIRGLKEGK--------A-VQVPI---------------------YDF-----KSSSRIGY----------RT 153 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~--------~-i~~p~---------------------~~~-----~~~~~~~~----------~~ 153 (421)
+..|+.+++....... . ...+. ++. ......+. +.
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 8899999987531000 0 00000 000 00011111 11
Q ss_pred ccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEe
Q 014621 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 154 ~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~ 227 (421)
.....||+.|++++ ..+|.++++||||++||+....++.+-+.+.|.|+ .+.+.++||+++.+++|++.
T Consensus 157 SgGq~qrv~lA~aL-----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 157 APGWKLRVLLAQAL-----FSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred CHHHHHHHHHHHHH-----hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 11234899999999 88999999999999999999888887777778887 78889999999999999984
Q ss_pred -ecCCcccE
Q 014621 228 -PDLQTAHI 235 (421)
Q Consensus 228 -p~~~~aDi 235 (421)
..+...++
T Consensus 232 ~~~g~~~~~ 240 (530)
T PRK15064 232 VYPGNYDEY 240 (530)
T ss_pred EecCCHHHH
Confidence 45544433
No 250
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.87 E-value=1.9e-22 Score=195.05 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=131.9
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+++ +..++|++|++.++
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----~~~i~~v~q~~~~~ 79 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----KLRIGYVPQKLYLD 79 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----ccCEEEeccccccc
Confidence 4567777777789999999999999 99999999999999999999999 9999999987 34699999998776
Q ss_pred cc--chHHHHHHhhhcc--ccccc--ccccccc-ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014621 119 DY--DTLLENIRGLKEG--KAVQV--PIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 119 ~~--~tv~enl~~l~~~--~~i~~--p~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
+. .++.+++...... ..+.. ....... .............||+.|++++ ...|.++++|||++++|+.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral-----~~~p~lllLDEPt~~LD~~ 154 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARAL-----LNRPQLLVLDEPTQGVDVN 154 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCcCCCHH
Confidence 54 3666665431100 00000 0000000 0000001111234899999999 8999999999999999998
Q ss_pred HHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 192 LVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 192 ~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
....+ ++++.++ |.|+ .+.+.++||++++|.+ .+...+...++
T Consensus 155 ~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 155 GQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 76654 4555555 7777 7788899999999965 67666665554
No 251
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.3e-22 Score=193.92 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=139.4
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe------ecC-------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY------NDS------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~------~~~------- 104 (421)
-.+++++.||...+++++||++.+|+ +++|+|+||||||||+++|+|+. |++|.|.++|. +..
T Consensus 12 ~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 12 NISRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred eeeeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 34677888888889999999999999 99999999999999999999998 88877766653 321
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccc----cc--ccc---c-cccc----ccccc---ccccccCceEEEeehh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV----QV--PIY---D-FKSS----SRIGY---RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i----~~--p~~---~-~~~~----~~~~~---~~~~~~~qrVlIaegl 167 (421)
++.++|++|++.+++..|+.+|+......... .. ... + +... ..... .......||+.|++++
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34689999999998888999999864221100 00 000 0 0000 00000 1111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
..+|.+.++|||++++|+...+.+. +++.+ +.|+ .+.+..+||++++|++|++...+...++
T Consensus 169 -----~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 169 -----ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred -----HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999766554 44433 5666 7888899999999999999888776665
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=3.7e-22 Score=183.29 Aligned_cols=158 Identities=21% Similarity=0.254 Sum_probs=120.5
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Ccccccc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~vf 112 (421)
+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.+... +.++|+|
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 577888887889999999999999 99999999999999999999999 899999999987532 2467777
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~ 192 (421)
| + +..+.-.... +......++ ...||+.|++++ ..+|.+.++|||++++|+..
T Consensus 80 q---------~---l~~~gl~~~~-----~~~~~~LS~-----G~~qrl~laral-----~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 80 Q---------A---LELLGLAHLA-----DRPFNELSG-----GERQRVLLARAL-----AQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred H---------H---HHHcCCHhHh-----cCCcccCCH-----HHHHHHHHHHHH-----hcCCCEEEEeCCccCCCHHH
Confidence 6 1 1111000000 011112222 234889999999 89999999999999999987
Q ss_pred HHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEee
Q 014621 193 VKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 193 ~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
...+ +++++++ |.|+ .+.+.++||+++++++|.+..
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 6654 4566555 7776 677789999999999998864
No 253
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=1.6e-22 Score=221.36 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=146.2
Q ss_pred eeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|+ ...+|+++||++++|+ .++|+|+||||||||++.|+|+. |++|.|.+||.++. ++.
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 45789999995 3579999999999999 99999999999999999999999 99999999998764 467
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc---ccc----c-ccccc----c--ccccccc---ccccccCceEEEeehhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK---AVQ----V-PIYDF----K--SSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~----~-p~~~~----~--~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
+++++|++.+|+ .|+++|+....... .+. . ...++ . .....+. .......||+.|||++
T Consensus 541 i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal--- 616 (694)
T TIGR03375 541 IGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL--- 616 (694)
T ss_pred cEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH---
Confidence 999999999887 59999998753211 000 0 00000 0 0011111 1112245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +++|+ .+.+ +.||++++|++|++.+.|.+.+++
T Consensus 617 --l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 617 --LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred --hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeCCHHHHH
Confidence 889999999999999999998888766654 36676 5554 579999999999999998877763
No 254
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=213.42 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=137.1
Q ss_pred eeeeEEEe---CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecC--------CC
Q 014621 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SR 106 (421)
Q Consensus 40 ~~~ls~~~---g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-~~G~I~~Dg~~~~--------~~ 106 (421)
.+++++.| +...+++++||++++|+ ++||+|+||||||||+|+|+|++ | ++|.|.++|.++. ++
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred EecCccccccccccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 45566666 34579999999999999 99999999999999999999998 4 8999999998653 23
Q ss_pred ccccccCCC---CCCccchHHHHHHhhhcc--cc---cccc---cccccccccccc----------ccccccCceEEEee
Q 014621 107 IIDGNFDDP---RLTDYDTLLENIRGLKEG--KA---VQVP---IYDFKSSSRIGY----------RTLEVPSSRIVIIE 165 (421)
Q Consensus 107 ~ig~vfq~p---~l~~~~tv~enl~~l~~~--~~---i~~p---~~~~~~~~~~~~----------~~~~~~~qrVlIae 165 (421)
.++|++|++ .+++..++.+|+...... .. .... .......+..+. .......||+.||+
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 589999996 467788999999753210 00 0000 000000011110 11112349999999
Q ss_pred hhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 166 gl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++ ...|.++++||||++||+...+.+ +++++++|.|+ ++.+.++||++++|++|++...+...
T Consensus 419 al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 419 CL-----LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HH-----hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccc
Confidence 99 899999999999999999976654 56676678888 78889999999999999987655433
No 255
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=2e-22 Score=214.16 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=137.9
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecC-----
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS----- 104 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~----- 104 (421)
.+++++.|+ .+.+++++||++.+|+ ++||+||||||||||+++|+|++ | ++|.|.++|.+..
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 345556664 2679999999999999 99999999999999999999999 5 6899999998642
Q ss_pred ------CCccccccCCCC--CCccchHHHHHHhhhc---cccc-ccccccccccccccc------------ccccccCce
Q 014621 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLKE---GKAV-QVPIYDFKSSSRIGY------------RTLEVPSSR 160 (421)
Q Consensus 105 ------~~~ig~vfq~p~--l~~~~tv~enl~~l~~---~~~i-~~p~~~~~~~~~~~~------------~~~~~~~qr 160 (421)
++.++|+||++. +++..++.+++..... +... .....-....+..+. +......||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 136899999985 5666788888764321 1000 000000000011110 111123499
Q ss_pred EEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 161 VlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
|.||+++ ..+|.++++||||++||+...+.++ ++++++ |.|+ .+.+..+||++++|++|++...+
T Consensus 165 v~iAraL-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 165 VMIAMAL-----LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHH-----hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999 9999999999999999999876554 666554 8887 77788999999999999998887
Q ss_pred CcccE
Q 014621 231 QTAHI 235 (421)
Q Consensus 231 ~~aDi 235 (421)
...++
T Consensus 240 ~~~~~ 244 (529)
T PRK15134 240 RAATL 244 (529)
T ss_pred CHHHH
Confidence 76665
No 256
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=197.03 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=137.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC---------
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~--------- 104 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+..
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 5678888877889999999999999 99999999999999999999997 37999999998652
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhcccccc--cccccccccccc----------c---cccccccCceEEEeehhhh
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ--VPIYDFKSSSRI----------G---YRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~--~p~~~~~~~~~~----------~---~~~~~~~~qrVlIaegl~~ 169 (421)
++.++|++|++.+++. ++.+|+.......... ....-....+.. . .+......||+.|++++
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL-- 195 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI-- 195 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH--
Confidence 3468999999988875 9999997642110000 000000000000 0 01111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEE-EccCcEEeecCCcccE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVY-PMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~-~m~~g~I~p~~~~aDi 235 (421)
..+|.++++|||+++||+.....+. +++.+ +.|+ .+.+.++||+++ .|++|++...+...++
T Consensus 196 ---~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 196 ---APDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred ---HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 8999999999999999999776554 55543 3565 778889999975 5699999877665554
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.8e-22 Score=195.86 Aligned_cols=187 Identities=11% Similarity=0.106 Sum_probs=132.6
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccC
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq 113 (421)
.+++++.|+ ...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++|++|
T Consensus 9 ~~~l~~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred EEeEEEEecCCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 456677774 4679999999999999 99999999999999999999999 99999999998653 235899999
Q ss_pred CCCCC--ccchHHHHHHhhhcc------cc-cccccccccccccccc---------ccccccCceEEEeehhhhhhhccC
Q 014621 114 DPRLT--DYDTLLENIRGLKEG------KA-VQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 114 ~p~l~--~~~tv~enl~~l~~~------~~-i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++.+. ...++.+++...... .. ..............+. .......||+.|++++ ..+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL-----~~~ 160 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI-----AQQ 160 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH-----hcC
Confidence 98652 223566666431100 00 0000000000011110 1111134899999999 889
Q ss_pred CccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 176 PLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|.++++|||++++|+...+.+ +++++++|.|+ .+.+.++||+++.+ +|++...+...++
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999999999999876655 45666568777 67788999999766 8999777766555
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=2.2e-22 Score=191.60 Aligned_cols=176 Identities=18% Similarity=0.245 Sum_probs=129.5
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C----CeeEEEECCeecC-----CCccccccCCCC--CCc
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p----~~G~I~~Dg~~~~-----~~~ig~vfq~p~--l~~ 119 (421)
+++++||++++|+ +++|+|+||||||||+++|+|++ | ++|.|.++|.+.. ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999999 7 8999999998653 246899999985 445
Q ss_pred cchHHHHHHhhhc--cccccc-c--c------ccccc----ccccccccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 120 YDTLLENIRGLKE--GKAVQV-P--I------YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 120 ~~tv~enl~~l~~--~~~i~~-p--~------~~~~~----~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
..++.+++.+... +..... . . ..... .............||+.|++++ ..+|.++++|||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral-----~~~p~vllLDEP 152 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL-----LLEPPFLIADEP 152 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEcCC
Confidence 6788888764321 100000 0 0 00000 0000001111234899999999 899999999999
Q ss_pred ecCccHHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 185 TGGVHFDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 185 ts~LD~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++++|+.....+ ++++.++ |.|+ .+.+..+||++++|.+|.+...+...++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999876544 4666554 7777 7778899999999999999877765555
No 259
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=2e-22 Score=216.15 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=146.3
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|++ ..+|+++||++++|+ .++|+||||||||||+++|+|+. |++|.|.+||.++. ++.
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 467889999953 579999999999999 99999999999999999999999 99999999998754 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc---cccc-----cccccccc-----ccccc---ccccccCceEEEeehhhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----PIYDFKSS-----SRIGY---RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~~-----p~~~~~~~-----~~~~~---~~~~~~~qrVlIaegl~~L~ 171 (421)
+++++|++.+|+ .|+++|+....... .+.. ...++-.. ...+. .......||+.|||++
T Consensus 416 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal---- 490 (574)
T PRK11160 416 ISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL---- 490 (574)
T ss_pred eeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH----
Confidence 999999999887 59999998753210 0000 00111000 11111 1112245999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +|+|+ .+.+. .||++++|++|++.+.+.+++++
T Consensus 491 -l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 491 -LHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 889999999999999999998888766654 37776 45454 49999999999999999888774
No 260
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=7.3e-23 Score=227.55 Aligned_cols=219 Identities=17% Similarity=0.166 Sum_probs=161.5
Q ss_pred CCCCCccccccccceeeeeecC----cceecCeeeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHH
Q 014621 9 ADSPRRRPGLLRDQVQLVKKKD----SDRYEIVPIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (421)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~----~~~y~~~~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKST 81 (421)
..+..+.++++.+...+..... ........-.+++.|+|.. ..+|+++||.+++|+ .++|+|+|||||||
T Consensus 318 ~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~---~valVG~SGsGKST 394 (1228)
T KOG0055|consen 318 RAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ---TVALVGPSGSGKST 394 (1228)
T ss_pred ccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCC---EEEEECCCCCCHHH
Confidence 3444566666666655444331 1112234567899999864 479999999999999 99999999999999
Q ss_pred HHHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---ccc-----ccccccc
Q 014621 82 FTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQV-----PIYDFKS 145 (421)
Q Consensus 82 L~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~~-----p~~~~~~ 145 (421)
+++.|.++. |++|.|.+||.+.. +.+||.++|+|.+|+ .|+.|||.+.+.+.. +.. ...++-.
T Consensus 395 ~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 395 LIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred HHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 999999999 99999999999764 567999999997664 799999998763311 100 0011100
Q ss_pred ------cccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHH--HcCCCH------H
Q 014621 146 ------SSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEP------E 208 (421)
Q Consensus 146 ------~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~--~~G~ti------~ 208 (421)
....+. +.....+||++|||++ .-+|.++++||+|++||+...+.+..-+. ..|+|. +
T Consensus 474 ~lp~g~~T~vge~g~qLSGGQKQRIAIARal-----v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL 548 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQLSGGQKQRIAIARAL-----VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL 548 (1228)
T ss_pred hhHHhhcccccCCCCCCChHHHHHHHHHHHH-----HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence 011111 1222245999999999 99999999999999999998776664443 347765 6
Q ss_pred HHHHHHhceEEEccCcEEeecCCcccEEE
Q 014621 209 EIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 209 ~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
..++. +|++++|++|+|++.|.+.+++-
T Consensus 549 StIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 549 STIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 66666 99999999999999999999973
No 261
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.7e-22 Score=208.11 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=149.9
Q ss_pred eeeeeeEEEeCcEE-EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccc
Q 014621 38 PIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 38 ~v~~~ls~~~g~~~-~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig 109 (421)
...++++|.||.+. +|+++||+|++|+ -+||+|+|||||||++|+|.++.-.+|.|.+||.++. |+.||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 57889999999766 9999999999999 9999999999999999999999988999999999875 56799
Q ss_pred cccCCCCCCccchHHHHHHhhhcccc---ccc--------------c-ccccccccccccccccccCceEEEeehhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKA---VQV--------------P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~---i~~--------------p-~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~ 171 (421)
++||+..+|+ .|+..||.+...... +.. | -|.-..+++ |......+.|||.++|++
T Consensus 429 ~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~---- 502 (591)
T KOG0057|consen 429 VVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAF---- 502 (591)
T ss_pred EeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchHHHHHHHHHH----
Confidence 9999998886 799999987532111 000 0 011111111 111222346999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.+.++||+|++||..+.+++++-+.. .|+|+ .--...-||+++++++|.+.+.+.+.++.
T Consensus 503 -lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 503 -LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred -hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHh
Confidence 899999999999999999999999877765 48888 22234457999999999999999887775
No 262
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.87 E-value=2.6e-22 Score=193.57 Aligned_cols=176 Identities=9% Similarity=0.054 Sum_probs=131.0
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccccccCCCCCCccchHH
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~ 124 (421)
+|+++||++++|+ ++||+|+||||||||+++|+|++|.+|.|.+||.+.. ++.++|+||++.++...|+.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999 9999999999999999999999976999999998753 23579999999888888999
Q ss_pred HHHHhhhccc-cccc-ccccccccccccc---------ccccccCceEEEeehhhhhhhcc-------CCccceEEEEec
Q 014621 125 ENIRGLKEGK-AVQV-PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKL-------RPLIDLRVSVTG 186 (421)
Q Consensus 125 enl~~l~~~~-~i~~-p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l-------~p~ldL~DEpts 186 (421)
+|+....... .... ...........+. .......||+.|++++ .. .|.++++|||++
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV-----LQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-----hccccccCCCCCEEEEcCCcc
Confidence 9998642110 0000 0000000011110 1111234899999999 54 679999999999
Q ss_pred CccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 187 GVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 187 ~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++|+...+.+. +++.++|.|+ .+.+.++||++++|++|++...+...++
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 163 SLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999766544 5665568787 6778899999999999999877765554
No 263
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=4.1e-22 Score=186.44 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=124.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.+++++
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 4677888887889999999999999 99999999999999999999999 89999999998653 34588999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccccccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
|++.+++..|+.+|+..............-....+..+. .......||+.|++++ ..+|.+.++||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllDE 155 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW-----LTRAPLWILDE 155 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 999888888999999765321100000000000000110 1111234899999999 99999999999
Q ss_pred EecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceE
Q 014621 184 VTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETV 218 (421)
Q Consensus 184 pts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V 218 (421)
||+++|+.....+. ++++++|.|+ .+.+.++.+|+
T Consensus 156 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceE
Confidence 99999998766554 5555557676 44444444444
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.86 E-value=2e-22 Score=213.64 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=136.9
Q ss_pred eeeeEEEeC-----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC-Cee---c------
Q 014621 40 EDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYN---D------ 103 (421)
Q Consensus 40 ~~~ls~~~g-----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~D-g~~---~------ 103 (421)
.+++++.|+ .+.+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++ |.. .
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 456666663 3579999999999999 99999999999999999999999 899999995 521 1
Q ss_pred ----CCCccccccCCCCCCccchHHHHHHhhhc-ccc---cccc------cccccc------ccccccccccccCceEEE
Q 014621 104 ----SSRIIDGNFDDPRLTDYDTLLENIRGLKE-GKA---VQVP------IYDFKS------SSRIGYRTLEVPSSRIVI 163 (421)
Q Consensus 104 ----~~~~ig~vfq~p~l~~~~tv~enl~~l~~-~~~---i~~p------~~~~~~------~~~~~~~~~~~~~qrVlI 163 (421)
.++.++|++|++.+++..++.+|+..... ... .... ...+.. ......+......||+.|
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 12458999999999998999999975321 000 0000 001100 000000111123499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
++++ ..+|.++++||||++||+...+.++ ++++++ |.|+ ++.+.++||++++|++|++...+...
T Consensus 439 aral-----~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 439 AQVL-----IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999 8999999999999999999877655 555544 8887 78889999999999999987665443
Q ss_pred c
Q 014621 234 H 234 (421)
Q Consensus 234 D 234 (421)
+
T Consensus 514 ~ 514 (520)
T TIGR03269 514 E 514 (520)
T ss_pred H
Confidence 3
No 265
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.86 E-value=3.7e-22 Score=186.46 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=127.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4678888888889999999999999 99999999999999999999999 89999999998643 24689999
Q ss_pred CCCCCCccchHHHHHHhhhcccc---ccc--cccccccc-cccccccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKA---VQV--PIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~---i~~--p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
|++.+++..|+.+|+........ +.. ........ ............||+.+++++ ..+|.+.++||||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral-----~~~p~llllDEPt~ 154 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL-----LSGRPLWILDEPTT 154 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCC
Confidence 99998888999999977532110 000 00000000 000001111234899999999 89999999999999
Q ss_pred CccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc
Q 014621 187 GVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM 221 (421)
Q Consensus 187 ~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m 221 (421)
++|+...+.+. +++.++|.|+ ...+..+|++++..
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999876655 4444557766 34455577777554
No 266
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=3.7e-22 Score=191.67 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=132.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc--C-CCeeEEEECCeecC--------CCcc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl--l-p~~G~I~~Dg~~~~--------~~~i 108 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|+ + |++|.|.++|.+.. ++.+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 4678888887889999999999999 9999999999999999999999 4 78999999997643 1358
Q ss_pred ccccCCCCCCccchHHHHHHhhhcc----cccc-ccccccc-----ccccccc-----------ccccccCceEEEeehh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEG----KAVQ-VPIYDFK-----SSSRIGY-----------RTLEVPSSRIVIIEGI 167 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~----~~i~-~p~~~~~-----~~~~~~~-----------~~~~~~~qrVlIaegl 167 (421)
+|++|++.+++..+...++...... .... ....... ..+..+. .......||+.|++++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 8999998877665554443321100 0000 0000000 0000000 1111234899999999
Q ss_pred hhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHH-hceEEEccCcEEeecCCc
Q 014621 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 168 ~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~~~ 232 (421)
...|.++++||||+++|+.....+. +++++.|.|+ .+.+..+ +|+++.|++|.+...+..
T Consensus 161 -----~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 161 -----VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred -----HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 8999999999999999999776655 5666667777 5667776 899999999998765543
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=2.3e-22 Score=211.76 Aligned_cols=188 Identities=8% Similarity=0.040 Sum_probs=135.7
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~v 111 (421)
.+++++.|+...+|+++||++++|+ ++||+|+||||||||+|+|+|++ |++|.|.++|.... ++.++++
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 5677888877789999999999999 99999999999999999999999 89999999886542 2348899
Q ss_pred cCCCCC--Cc------cchHHHHHHhhhc-cccccc--ccccccc-ccccccccccccCceEEEeehhhhhhhccCCccc
Q 014621 112 FDDPRL--TD------YDTLLENIRGLKE-GKAVQV--PIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 112 fq~p~l--~~------~~tv~enl~~l~~-~~~i~~--p~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+|++.. +. ..++.+++..... ...+.. ....... ..+...+......||+.|++++ ..+|.++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~ll 157 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL-----MSEPDLL 157 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH-----HcCCCEE
Confidence 998653 11 3567776542110 000000 0000000 0000011112234999999999 8999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++||||++||+...+.+ +++++++|.|+ .+.+.++||++++|++|++...+...++
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999976655 46666668887 7888899999999999999877665544
No 268
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2e-22 Score=188.34 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=126.3
Q ss_pred eeeeEEEeCcE-----EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccC
Q 014621 40 EDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (421)
Q Consensus 40 ~~~ls~~~g~~-----~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq 113 (421)
.+++++.|+.. .+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++| .++|++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q 73 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQ 73 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEec
Confidence 46778888653 69999999999999 99999999999999999999999 9999999998 6899999
Q ss_pred CCCCCccchHHHHHHhhhcccc--ccc-----cc---ccccc------ccccccccccccCceEEEeehhhhhhhccCCc
Q 014621 114 DPRLTDYDTLLENIRGLKEGKA--VQV-----PI---YDFKS------SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~--i~~-----p~---~~~~~------~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
++.+++ .|+.+|+........ ... .. .+... .............||+.|++++ ..+|.
T Consensus 74 ~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral-----~~~p~ 147 (204)
T cd03250 74 EPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV-----YSDAD 147 (204)
T ss_pred Cchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH-----hcCCC
Confidence 999885 699999976422100 000 00 00000 0000001112234999999999 99999
Q ss_pred cceEEEEecCccHHHHHHHHH----HHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 178 IDLRVSVTGGVHFDLVKRVFR----DIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIlr----dl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
+.++|||++++|+...+.+.+ +..+.|.|+ .+.+.. ||+++.|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999998776554 333447776 566666 99999998873
No 269
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.86 E-value=6.5e-22 Score=187.30 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=125.6
Q ss_pred eeeEEEeC-------cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC--Ce--ecC----
Q 014621 41 DTLSFEKG-------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD--NY--NDS---- 104 (421)
Q Consensus 41 ~~ls~~~g-------~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~D--g~--~~~---- 104 (421)
+++++.|+ ...+++++||++.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++ |. +..
T Consensus 5 ~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EeeEEEeecccCCCcceEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 55666664 2579999999999999 99999999999999999999999 899999998 42 221
Q ss_pred -------CCccccccCCCCCCccchHHHHHHhhhc--ccc---ccccccccccccccc----------cccccccCceEE
Q 014621 105 -------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA---VQVPIYDFKSSSRIG----------YRTLEVPSSRIV 162 (421)
Q Consensus 105 -------~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~---i~~p~~~~~~~~~~~----------~~~~~~~~qrVl 162 (421)
++.++|++|++.+++..++.+++.+... +.. ....... .....+ .+......||+.
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARE--LLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 2458999999999999999999875321 100 0000000 000011 011112349999
Q ss_pred EeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc
Q 014621 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM 221 (421)
Q Consensus 163 Iaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m 221 (421)
|++++ ..+|.++++|||++++|+...+.+. ++++++|.|+ .+.+..+||+++.+
T Consensus 160 laral-----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGF-----IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHH-----hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999 8899999999999999999776654 5555568887 67788899998765
No 270
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=7.5e-22 Score=211.07 Aligned_cols=176 Identities=12% Similarity=0.039 Sum_probs=134.1
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
.+++++.|+ .+.+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++ ...++|++|++.+
T Consensus 9 i~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 81 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----GIKVGYLPQEPQL 81 (556)
T ss_pred EeeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEecCCCC
Confidence 456777776 6789999999999999 99999999999999999999999 8999999875 2468999999999
Q ss_pred CccchHHHHHHhhhcc--------------cccccc--------------------ccccc-----ccccccc-------
Q 014621 118 TDYDTLLENIRGLKEG--------------KAVQVP--------------------IYDFK-----SSSRIGY------- 151 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~--------------~~i~~p--------------------~~~~~-----~~~~~~~------- 151 (421)
++..|+.+|+.+.... .....+ .++.. .....+.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 161 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV 161 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCch
Confidence 9889999998753110 000000 00000 0000000
Q ss_pred -ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 152 -RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 152 -~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
.......||+.|++++ ..+|.++++||||++||+.....+..-+.+.+.|+ .+.+.++||+++.|++|
T Consensus 162 ~~LSgGqkqrv~la~al-----~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 162 TKLSGGERRRVALCRLL-----LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred hhcCHHHHHHHHHHHHH-----hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 1111234999999999 89999999999999999998888776666554566 78889999999999999
Q ss_pred EEe
Q 014621 225 FIE 227 (421)
Q Consensus 225 ~I~ 227 (421)
.+.
T Consensus 237 ~i~ 239 (556)
T PRK11819 237 RGI 239 (556)
T ss_pred EEE
Confidence 875
No 271
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.86 E-value=1.6e-22 Score=188.03 Aligned_cols=170 Identities=36% Similarity=0.676 Sum_probs=141.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC--------CeeEEEECCeecCC--------CccccccCCCCCCccchHHHHHHhhh
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp--------~~G~I~~Dg~~~~~--------~~ig~vfq~p~l~~~~tv~enl~~l~ 131 (421)
||||.|+||||||||++.|...+. ..+.+.+|+++... ..-.+.|++|..++...+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999873 14567778875321 11245788999999999999999999
Q ss_pred ccccccccccccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHH
Q 014621 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (421)
Q Consensus 132 ~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~v 210 (421)
.+..+..|.|++......+ ......+.+|+|+||+|++++ .+++.+|++++++++.|.+..|++.||+.++|++..++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 8889999999999877665 334456789999999999984 78999999999999999999999999999999999999
Q ss_pred HHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 211 IHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 211 i~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
+++|. ++.+++..+|.|.+..||++|++
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~ 187 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPS 187 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEES
T ss_pred EEEee-cCChhhhhheeccccccEEEECC
Confidence 99998 99999999999999999999964
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=4.7e-22 Score=187.79 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=131.3
Q ss_pred eeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccc
Q 014621 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig 109 (421)
.+++++.|+ .+.+++++||++++|+ +++|+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 467777775 3579999999999999 99999999999999999999999 89999999998653 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccc--cccc-----ccccccc------c---cccccccccccCceEEEeehhhhhhhc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGK--AVQV-----PIYDFKS------S---SRIGYRTLEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~--~i~~-----p~~~~~~------~---~~~~~~~~~~~~qrVlIaegl~~L~d~ 173 (421)
|++|++.+++ .|+.+|+....... .+.. ...++.. . ............||+.|++++ .
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral-----~ 155 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL-----L 155 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH-----h
Confidence 9999998776 59999986432100 0000 0000000 0 000001111234899999999 9
Q ss_pred cCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
.+|.++++|||++++|+.....+.+-+.+ ++.|+ .+.+.. ||++++|.+|.+...+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecC
Confidence 99999999999999999987766544432 35565 455554 8999999999987654
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=6.6e-22 Score=232.65 Aligned_cols=189 Identities=13% Similarity=-0.029 Sum_probs=147.4
Q ss_pred eeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccc
Q 014621 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig 109 (421)
..+++++.|+. +.||++|||.+++|| ++||+|+||||||||+|+|+|++ |++|.|.++|++.. ++.+|
T Consensus 1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1939 RLNELTKVYSGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred EEEEEEEEECCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 46678888874 689999999999999 99999999999999999999999 99999999998763 34699
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccc-----cccc----ccccccccc---cccccccCceEEEeehhhhhhhccCCc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQ-----VPIY----DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~-----~p~~----~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
|++|++.+++.+|+++++.+...-.... .... .+....... .+......||+.+|.|+ ..+|.
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL-----i~~P~ 2090 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL-----IGCPP 2090 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH-----hcCCC
Confidence 9999999999999999998643211110 0000 000000000 01111234899999999 99999
Q ss_pred cceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 178 IDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
++++|||++++|+...+.+ ++++.++|+|+ ++.++.+||++++|.+|++...+...++
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999976654 46666668887 8889999999999999999988877766
No 274
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.7e-22 Score=180.65 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=136.2
Q ss_pred eeeeeEEEeCcEE--EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccC
Q 014621 39 IEDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFD 113 (421)
Q Consensus 39 v~~~ls~~~g~~~--~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq 113 (421)
..++++.+|+++. +++++|++|.+|+ .+.+.||||||||||++.++|+. |..|+|.+||..+. ...-|.+||
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4567777787665 9999999999999 99999999999999999999999 99999999999765 234689999
Q ss_pred CCCCCccchHHHHHHhhhcccccccc---cccccccccccc---------ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++.+++++++.+|+++...-..+.+. .........++. +......|||.|++|+ +..|.++++
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARAL-----a~eP~~LlL 156 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL-----AVEPQLLLL 156 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHh-----hcCcceEee
Confidence 99999999999999986532221110 111111111111 1112234999999999 999999999
Q ss_pred EEEecCccHHHHHHHH---HHH-HHcCCCH------HHHHHHHhceEEEccC--cEEee
Q 014621 182 VSVTGGVHFDLVKRVF---RDI-QRVGQEP------EEIIHQISETVYPMYK--AFIEP 228 (421)
Q Consensus 182 DEpts~LD~~~~rrIl---rdl-~~~G~ti------~~vi~~~~d~V~~m~~--g~I~p 228 (421)
|||.+++|.-+.+++. -++ .+.|+.+ .+.+--.+++.++|.- |+|..
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 9999999987665543 444 4457766 5556678899999865 45543
No 275
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=5.3e-22 Score=209.44 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=135.7
Q ss_pred eeeeEEEe---CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecC--------CC
Q 014621 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SR 106 (421)
Q Consensus 40 ~~~ls~~~---g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-~~G~I~~Dg~~~~--------~~ 106 (421)
.+++++.| +...+++++||++.+|+ ++||+|+||||||||+++|+|++ | ++|.|.++|.+.. ++
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 44566655 34579999999999999 99999999999999999999999 5 7999999998653 24
Q ss_pred ccccccCCC---CCCccchHHHHHHhhhcc-c----ccccc---cccccccccccc----------ccccccCceEEEee
Q 014621 107 IIDGNFDDP---RLTDYDTLLENIRGLKEG-K----AVQVP---IYDFKSSSRIGY----------RTLEVPSSRIVIIE 165 (421)
Q Consensus 107 ~ig~vfq~p---~l~~~~tv~enl~~l~~~-~----~i~~p---~~~~~~~~~~~~----------~~~~~~~qrVlIae 165 (421)
.++|++|++ .+++..|+.+|+...... . ..... ..-....+..+. .......||+.||+
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 589999996 478888999998753210 0 00000 000000011111 11112349999999
Q ss_pred hhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 166 gl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
++ ...|.++++||||++||+...+.+ +++++++|.|+ ++.+.++||+++++++|++....
T Consensus 417 al-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 417 ML-----LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HH-----hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99 889999999999999999977654 47777678887 78889999999999999986433
No 276
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=7.7e-22 Score=191.13 Aligned_cols=187 Identities=10% Similarity=0.075 Sum_probs=134.9
Q ss_pred eeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
-.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |.+|.|.++|.+.. ++.+
T Consensus 21 ~~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 21 KIHDLCVRYENNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred EEEEEEEEeCCCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 45566676654 579999999999999 99999999999999999999998 89999999998653 3468
Q ss_pred ccccCCCCCCccchHHHHHHhhhcccc--cc-------c-cccccc---cccccc---cccccccCceEEEeehhhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGKA--VQ-------V-PIYDFK---SSSRIG---YRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~~--i~-------~-p~~~~~---~~~~~~---~~~~~~~~qrVlIaegl~~L~d 172 (421)
+|++|++.+++ .|+.+|+........ .. . ...+.. ...... ........||+.+++++
T Consensus 98 ~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral----- 171 (257)
T cd03288 98 SIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF----- 171 (257)
T ss_pred EEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH-----
Confidence 99999998876 488888753211000 00 0 000000 000000 01111234899999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.++++|||++++|+.....+.+-+.+ +|.|+ ++.+.. ||++++|++|++...+..+++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 899999999999999999987665544432 36776 555554 999999999999887766555
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=6.5e-22 Score=212.69 Aligned_cols=189 Identities=16% Similarity=0.195 Sum_probs=145.8
Q ss_pred eeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
--.++++|.|+. ..+|+++|+++++|+ .++|+|+||||||||++.|+|+. |+.|.|.+||.++. ++.+
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 457789999964 679999999999999 99999999999999999999999 99999999998754 4679
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc---ccccc-----ccc----c--cccccccc---ccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK---AVQVP-----IYD----F--KSSSRIGY---RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~---~i~~p-----~~~----~--~~~~~~~~---~~~~~~~qrVlIaegl~~L~ 171 (421)
+|++|+|.+|+ .|+++|+....... .+... ..+ + ......+. .......||+.|||++
T Consensus 412 ~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal---- 486 (588)
T PRK13657 412 AVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL---- 486 (588)
T ss_pred EEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH----
Confidence 99999999986 69999998753211 00000 000 0 00011111 1112235999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +++|+ .+.+ +.||+++.|.+|++.+.+.++++.
T Consensus 487 -l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 487 -LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred -hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 889999999999999999999988866654 36776 4444 569999999999999988877774
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.7e-22 Score=208.78 Aligned_cols=182 Identities=10% Similarity=0.079 Sum_probs=133.4
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~ 110 (421)
.+++++.++ .+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|
T Consensus 268 ~~~l~~~~~--~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 268 VRNVTSRDR--KKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EeCccccCC--CcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 344554433 38999999999999 99999999999999999999999 89999999997653 245899
Q ss_pred ccCC---CCCCccchHHHHHHhhhcc----c----cc-cccc-cc--ccccccccc----------ccccccCceEEEee
Q 014621 111 NFDD---PRLTDYDTLLENIRGLKEG----K----AV-QVPI-YD--FKSSSRIGY----------RTLEVPSSRIVIIE 165 (421)
Q Consensus 111 vfq~---p~l~~~~tv~enl~~l~~~----~----~i-~~p~-~~--~~~~~~~~~----------~~~~~~~qrVlIae 165 (421)
+||+ +.+++..|+.+|+...... . .. .... .. ....+..+. +......|||.||+
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 9998 4578888999998753210 0 00 0000 00 000011111 11112349999999
Q ss_pred hhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 166 gl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
++ ..+|.++++||||++||+.....+. ++++++|.|+ ++.+.++||+++++++|++....+
T Consensus 423 al-----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 423 WL-----CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HH-----hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99 8899999999999999999766554 5665668887 788899999999999999875443
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=6.8e-22 Score=187.43 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=128.2
Q ss_pred eeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 39 IEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 39 v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
-.+++++.|+. ..+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.
T Consensus 13 ~~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 13 KFQNVTFAYPTRPDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 45677777753 469999999999999 99999999999999999999999 89999999997542 346
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccccc---cc-----ccc----c--cccccccc---ccccccCceEEEeehhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQ---VP-----IYD----F--KSSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~i~---~p-----~~~----~--~~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
++|++|++.+++ .|+.+|+.......... .. ... + ........ +......||+.|++++
T Consensus 90 i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral--- 165 (226)
T cd03248 90 VSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL--- 165 (226)
T ss_pred EEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH---
Confidence 899999998776 59999997532211000 00 000 0 00000010 1111234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
..+|.++++|||++++|+...+.+. +++++ +.|+ ++.+. .||+++.+++|.+
T Consensus 166 --~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 166 --IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred --hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 8999999999999999999877655 44433 5565 56665 4999999998853
No 280
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.86 E-value=7.5e-22 Score=183.72 Aligned_cols=160 Identities=16% Similarity=0.067 Sum_probs=118.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|+...+++++||++.+|+ ++||+||||||||||+++|+|++ |+.|.|.++|.+.. ++.++|++
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 4677888888899999999999999 99999999999999999999998 89999999998643 24689999
Q ss_pred CCCCCCccchHHHHHHhhhccccccc-cccc----cccccccc---cccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQV-PIYD----FKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~-p~~~----~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
|++.+++..|+.+|+........... .... +....... ........||+.|++++ ..+|.+.++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-----~~~p~llllDEP 154 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLW-----LSRAPLWILDEP 154 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 99888888899999976432111000 0000 00000000 01111234899999999 899999999999
Q ss_pred ecCccHHHHHHHH---HHHHHcCCCH
Q 014621 185 TGGVHFDLVKRVF---RDIQRVGQEP 207 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~~G~ti 207 (421)
++++|+.....+. +++.++|.|+
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 9999998766554 4444446554
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=192.95 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=138.3
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC------CCeeEEEECCeecC--------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll------p~~G~I~~Dg~~~~-------- 104 (421)
..+++++.|+...+|+++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++.
T Consensus 47 ~i~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 47 SVEDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred EEEEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 46789999988899999999999999 99999999999999999999997 37999999998653
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhccc-c-----------cccccc-c---cccccccc-------------cccc
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGK-A-----------VQVPIY-D---FKSSSRIG-------------YRTL 154 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~-~-----------i~~p~~-~---~~~~~~~~-------------~~~~ 154 (421)
++.++|++|++.+++ .++.+|+.+..... . ...... . .......+ ....
T Consensus 124 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 124 LRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 245899999998887 49999998642110 0 000000 0 00000000 0111
Q ss_pred cccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceE-EEccCc
Q 014621 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETV-YPMYKA 224 (421)
Q Consensus 155 ~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V-~~m~~g 224 (421)
....||+.|++++ ..+|.++++|||+++||+.....+. +++++ +.|+ .+.+.++||++ +++++|
T Consensus 203 gGq~qrv~LAraL-----~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 203 GGQQQRLCIARCL-----AVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred HHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 1124999999999 9999999999999999998766554 45544 4565 77888999997 567999
Q ss_pred EEeecCCcccE
Q 014621 225 FIEPDLQTAHI 235 (421)
Q Consensus 225 ~I~p~~~~aDi 235 (421)
++...+...++
T Consensus 277 ~i~~~g~~~~~ 287 (305)
T PRK14264 277 ELVEYDDTDKI 287 (305)
T ss_pred EEEEeCCHHHH
Confidence 99877765544
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=7e-22 Score=210.63 Aligned_cols=188 Identities=14% Similarity=0.156 Sum_probs=141.9
Q ss_pred eeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
--.++++|.|+ ...+++++|+++++|+ .++|+|+||||||||+++|+|++ |++|.|.+||.+.. ++.
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 45678999985 3689999999999999 99999999999999999999999 99999999998653 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhccc---cccc-----cccc----cc--ccccccc---ccccccCceEEEeehhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----PIYD----FK--SSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~~-----p~~~----~~--~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
+++++|+|.+++ .|+++|+....... .+.. ...+ +. .....+. .......||+.|||++
T Consensus 394 i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal--- 469 (544)
T TIGR01842 394 IGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL--- 469 (544)
T ss_pred eEEecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH---
Confidence 899999999987 49999997432110 0000 0000 00 0011111 1112234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHH---HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ---RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~---~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.-+|.++++||||+++|+.+.+++.+.+. .+|+|+ .+.+ ..||+++++++|++.+.+.+.++
T Consensus 470 --l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 470 --YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred --hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHH
Confidence 88999999999999999998887765443 346776 4444 57999999999999988876554
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=1.5e-21 Score=208.49 Aligned_cols=176 Identities=13% Similarity=0.060 Sum_probs=134.1
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
.+++++.|+ .+.+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.+++ ...++|++|++.+
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 79 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIKVGYLPQEPQL 79 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEeccCCC
Confidence 456777776 6789999999999999 99999999999999999999999 9999999875 3469999999999
Q ss_pred CccchHHHHHHhhhcc-c-----------cccccccc--------------------cc-------cccccc--------
Q 014621 118 TDYDTLLENIRGLKEG-K-----------AVQVPIYD--------------------FK-------SSSRIG-------- 150 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~-~-----------~i~~p~~~--------------------~~-------~~~~~~-------- 150 (421)
++..|+.+|+.+.... . ....+..+ +. .....+
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 9889999999753110 0 00000000 00 000000
Q ss_pred cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 151 ~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
........||+.|++++ ...|.++++||||++||+.....+..-+.+.+.|+ .+.+..+||+++.+++|
T Consensus 160 ~~LSgGqkqrv~la~al-----~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 160 TKLSGGERRRVALCRLL-----LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred hhcCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 01111234899999999 89999999999999999999888777766655566 78889999999999999
Q ss_pred EEe
Q 014621 225 FIE 227 (421)
Q Consensus 225 ~I~ 227 (421)
.+.
T Consensus 235 ~i~ 237 (552)
T TIGR03719 235 RGI 237 (552)
T ss_pred EEE
Confidence 875
No 284
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=7.8e-22 Score=211.42 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=143.5
Q ss_pred eeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
..++++|.|+. ..+|+++||++++|+ .++|+||||||||||+++|+|+. |++|.|.+||.+.. ++.+
T Consensus 315 ~~~~v~~~y~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 315 DVNIRQFTYPQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred EEEEEEEECCCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 46788888853 579999999999999 99999999999999999999999 99999999998753 3568
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc---ccccc-----ccc----cc--ccccccc---ccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK---AVQVP-----IYD----FK--SSSRIGY---RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~---~i~~p-----~~~----~~--~~~~~~~---~~~~~~~qrVlIaegl~~L~ 171 (421)
++++|+|.+++ .|+++|+....... .+... ..+ +. .....+. .......||+.|||++
T Consensus 392 ~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal---- 466 (569)
T PRK10789 392 AVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL---- 466 (569)
T ss_pred EEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH----
Confidence 99999999987 59999998653211 00000 000 00 0001111 1112234999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+...+++.+.+.+ +|+|+ .+.+ ..||++++|++|++.+.+.+.++.
T Consensus 467 -l~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 467 -LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred -hcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcCCEEEEEeCCEEEEecCHHHHH
Confidence 899999999999999999998888766544 47777 4444 459999999999999999877764
No 285
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.85 E-value=3.4e-21 Score=185.97 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=142.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecCCC-----------ccccccCC--CCCCccchHHHHHHhh
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~~~-----------~ig~vfq~--p~l~~~~tv~enl~~l 130 (421)
+|||.|+|||||||+++.+...+. ....|..|+|+...+ .-+.+|+| |++++...+.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999997762 367889999876321 14578999 9999999999999999
Q ss_pred hcccccccccccccc-----ccccccc----cccccCceEEEeehhhhhh----hccCCccceEEEEecCccHHHHHHHH
Q 014621 131 KEGKAVQVPIYDFKS-----SSRIGYR----TLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVF 197 (421)
Q Consensus 131 ~~~~~i~~p~~~~~~-----~~~~~~~----~~~~~~qrVlIaegl~~L~----d~l~p~ldL~DEpts~LD~~~~rrIl 197 (421)
+.+..++.|.|++.. +.+..+. .....+..++|+||++.++ ..++..+|++++++++.|.+.+|||.
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI~ 160 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIH 160 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHHH
Confidence 999999999997632 2221111 1124679999999998543 37899999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEE
Q 014621 198 RDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 198 rdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
||.++||++.++++.+|..++ ++|..+|.|+...||+++
T Consensus 161 RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~f 199 (277)
T cd02029 161 RDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINF 199 (277)
T ss_pred hhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEE
Confidence 999999999999999999999 999999999999999997
No 286
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.85 E-value=9.2e-22 Score=185.66 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=127.3
Q ss_pred eeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----------CC
Q 014621 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SR 106 (421)
Q Consensus 40 ~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----------~~ 106 (421)
..++.+.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.++|.... ++
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 346778885 5679999999999999 99999999999999999999999 89999999997531 24
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc--ccccc--cccccc-cc--------ccc---cccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQVP--IYDFKS-SS--------RIG---YRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~~p--~~~~~~-~~--------~~~---~~~~~~~~qrVlIaegl~~L 170 (421)
.++|++|++.++ ..++.+|+....... ..... ...... .. ... ........||+.|++++
T Consensus 80 ~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral--- 155 (218)
T cd03290 80 SVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL--- 155 (218)
T ss_pred eEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH---
Confidence 589999999887 469999997642110 00000 000000 00 000 01111234999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHH-----HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVF-----RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIl-----rdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
..+|.++++|||++++|+.....++ +.+++.|.|+ .+.+. .||+++.|++|
T Consensus 156 --~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 156 --YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred --hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 9999999999999999999766544 3444557776 55554 69999999876
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=1.8e-21 Score=172.93 Aligned_cols=135 Identities=14% Similarity=0.171 Sum_probs=114.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|+...+++++||++++|+ +++|+|+||||||||+++|+|++ |++|.|.+||. +.++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~----- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ----- 70 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-----
Confidence 4677888877789999999999999 99999999999999999999999 89999999984 35777777
Q ss_pred ccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHH
Q 014621 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlr 198 (421)
.+++ ..||+.|++++ ..+|.+.++|||++++|+.....+.+
T Consensus 71 -----------------------------lS~G-----~~~rv~laral-----~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 -----------------------------LSGG-----EKMRLALAKLL-----LENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred -----------------------------CCHH-----HHHHHHHHHHH-----hcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1222 23788899999 89999999999999999998877766
Q ss_pred HHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 199 DIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 199 dl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
-+.+.+.|+ .+.+..+||++++|++|+
T Consensus 112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 665556666 677889999999998874
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=190.45 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=138.9
Q ss_pred eeeeeecCcceecCe-----eeeee-eEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 014621 23 VQLVKKKDSDRYEIV-----PIEDT-LSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (421)
Q Consensus 23 ~~l~~~~~~~~y~~~-----~v~~~-ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G 94 (421)
+.+.+++.++.|..- ++-+. .++.+ +.+.+++++||++++|+ ++||+|+||||||||+++|+|++ |+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 456777777877541 22111 12222 45789999999999999 99999999999999999999999 8999
Q ss_pred EEEECCeecCCCccccccCCCCCCccchHHHHHHhhhcccccccc--------cccc-ccccccc---cccccccCceEE
Q 014621 95 VITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP--------IYDF-KSSSRIG---YRTLEVPSSRIV 162 (421)
Q Consensus 95 ~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p--------~~~~-~~~~~~~---~~~~~~~~qrVl 162 (421)
.|.++|. +++.+|++.+.+..|+.+|+............ ..+. ....... ........+|+.
T Consensus 80 ~I~~~g~------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 80 KVDRNGE------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEEECCE------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 9999984 34456666666677899998653211000000 0000 0000000 011112348999
Q ss_pred EeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 163 Iaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
+++++ ...|.++++|||++++|+...+.+ ++++.++|.|+ .+.+.++||+++++++|.+...+...
T Consensus 154 Laral-----~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 154 FSINI-----TVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHH-----hhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999 889999999999999999865544 45665568777 67788999999999999998766544
Q ss_pred cE
Q 014621 234 HI 235 (421)
Q Consensus 234 Di 235 (421)
++
T Consensus 229 ~~ 230 (264)
T PRK13546 229 DV 230 (264)
T ss_pred HH
Confidence 44
No 289
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.1e-22 Score=206.48 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=170.6
Q ss_pred CCCCCccccccccceeeeeecCccee---cCeeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHH
Q 014621 9 ADSPRRRPGLLRDQVQLVKKKDSDRY---EIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (421)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~y---~~~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r 84 (421)
-.++++-..|+|++.+++..-+.--+ +.+...+|++|.|. ++++|+||||.+++|+ .++++|||||||||++|
T Consensus 506 fiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 506 FIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCc---EEEEECCCCCchhHHHH
Confidence 34567788899999888776663333 45678899999995 7899999999999999 99999999999999999
Q ss_pred HHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc------------ccccccccc
Q 014621 85 KVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------VQVPIYDFK 144 (421)
Q Consensus 85 ~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~------------i~~p~~~~~ 144 (421)
.|-.+. .++|.|.+||+++. |+.||.++||.-+|+ .|+..||.+.+.+.. +..+...+.
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 999998 78999999999874 567999999998886 688888887543211 111111222
Q ss_pred cc--ccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCHHHHHHH----
Q 014621 145 SS--SRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQ---- 213 (421)
Q Consensus 145 ~~--~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti~~vi~~---- 213 (421)
.+ .++|. +....++|||+|||.+ .-.|.+.++||.|++||..+.|.|...+++ .++|-.-++++
T Consensus 662 egY~t~VGERGLkLSGGEKQRVAiARti-----LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi 736 (790)
T KOG0056|consen 662 EGYNTRVGERGLKLSGGEKQRVAIARTI-----LKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTI 736 (790)
T ss_pred hhhhhhhhhcccccCCcchhhHHHHHHH-----hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe
Confidence 11 22222 2233456999999999 889999999999999999999998877765 36655222222
Q ss_pred -HhceEEEccCcEEeecCCcccEEE
Q 014621 214 -ISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 214 -~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
-+|.+.++.+|.|.+.|.+.+++-
T Consensus 737 vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 737 VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred ecccEEEEEeCCeEeecCcHHHHHh
Confidence 268999999999999999999873
No 290
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=3e-21 Score=202.13 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=142.3
Q ss_pred eeeeecCcceecCe----eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeE
Q 014621 24 QLVKKKDSDRYEIV----PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV 95 (421)
Q Consensus 24 ~l~~~~~~~~y~~~----~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~ 95 (421)
.++.++++|+|..- --.+++++.++. +.+|+++||++++|+ ++||+|+||||||||+++|+|++ |++|.
T Consensus 4 ~i~~~n~tk~y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGe 80 (549)
T PRK13545 4 KVKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80 (549)
T ss_pred eEEEEeeeeeccccccceeEEEEEEEecCCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence 46677788888622 235678888765 579999999999999 99999999999999999999999 89999
Q ss_pred EEECCeecCCCccccccCCCCCCccchHHHHHHhhhc--ccc---cccc------cccccc-ccccccccccccCceEEE
Q 014621 96 ITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA---VQVP------IYDFKS-SSRIGYRTLEVPSSRIVI 163 (421)
Q Consensus 96 I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~--~~~---i~~p------~~~~~~-~~~~~~~~~~~~~qrVlI 163 (421)
|.++|.... + .+.+.+.+..|+.+|+.+... +.. .... ...... .............||+.|
T Consensus 81 I~I~G~~~~---i---~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 81 VDIKGSAAL---I---AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred EEECCEeee---E---EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHH
Confidence 999996521 1 123345566789999875321 100 0000 000000 000000111123499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
|+++ ..+|.++++|||+++||+...+.++ +++.++|.|+ ++.+.++||+++.+++|.+...+...+
T Consensus 155 ArAL-----~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 155 AISV-----HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred HHHH-----HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999 8999999999999999998766544 5555568787 788899999999999999988776665
Q ss_pred E
Q 014621 235 I 235 (421)
Q Consensus 235 i 235 (421)
+
T Consensus 230 l 230 (549)
T PRK13545 230 V 230 (549)
T ss_pred H
Confidence 5
No 291
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=6.2e-22 Score=211.69 Aligned_cols=190 Identities=16% Similarity=0.138 Sum_probs=145.2
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
-..++++|.|.. ..+|+++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.+.. ++.
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 457889999853 679999999999999 99999999999999999999999 99999999998653 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhc-cc---cccc-----c----ccccc--ccccccc---ccccccCceEEEeehhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKE-GK---AVQV-----P----IYDFK--SSSRIGY---RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~-~~---~i~~-----p----~~~~~--~~~~~~~---~~~~~~~qrVlIaegl~~ 169 (421)
++|++|+|.+|+ .|+++||..... .. .+.. . ..++. .....+. .......||+.|||++
T Consensus 408 i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal-- 484 (571)
T TIGR02203 408 VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL-- 484 (571)
T ss_pred ceEEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH--
Confidence 999999999886 599999986532 10 0000 0 00000 0011111 1112245999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.+.++||||+++|..+.+++.+.+.+ +++|+ .......||+|+.+.+|++.+.+.++++.
T Consensus 485 ---l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 485 ---LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred ---hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 889999999999999999999888766654 36776 23345679999999999999888887763
No 292
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.5e-21 Score=183.09 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=116.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq~ 114 (421)
.+++++.|+...+++++||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. ++.++|++|.
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4566777777789999999999999 99999999999999999999998 89999999998642 3457899988
Q ss_pred CCCCccchHHHHHHhhhccccc-cccccccccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 115 PRLTDYDTLLENIRGLKEGKAV-QVPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~~~~i-~~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
+.+++..++.+|+......... ...... .....+ ........||+.|++++ ..+|.++++|||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al-----~~~p~llllDEP 154 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAA--ALEAVGLAPLAHLPFGYLSAGQKRRVALARLL-----VSNRPIWILDEP 154 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHH--HHHHcCCHHHHcCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeCC
Confidence 8888888999998764321100 000000 000011 01111234899999999 899999999999
Q ss_pred ecCccHHHHHHHH---HHHHHcCCCH
Q 014621 185 TGGVHFDLVKRVF---RDIQRVGQEP 207 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~~G~ti 207 (421)
++++|+...+.+. ++++++|.|+
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999999776655 4444457665
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.85 E-value=1.2e-21 Score=210.59 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=144.4
Q ss_pred eeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
--.++++|.|++ ..+++++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.+.. ++.+
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 346789999964 578999999999999 99999999999999999999999 99999999998653 3578
Q ss_pred ccccCCCCCCccchHHHHHHhhhccc---cccc-----cccc----ccc--cccccc---ccccccCceEEEeehhhhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEGK---AVQV-----PIYD----FKS--SSRIGY---RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~~---~i~~-----p~~~----~~~--~~~~~~---~~~~~~~qrVlIaegl~~L~ 171 (421)
++++|++.+++ .|+++|+....... .... ...+ ... ....+. .......||+.|||++
T Consensus 412 ~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal---- 486 (585)
T TIGR01192 412 ATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI---- 486 (585)
T ss_pred EEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH----
Confidence 99999999886 69999998753211 0000 0000 000 001111 1112245999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++||||+++|+.+.+.+.+.+.+ +|+|+ .+.+ ..||+++++++|++.+.+.+.++.
T Consensus 487 -l~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 487 -LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV-RNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred -hcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 889999999999999999998887765543 37776 5555 459999999999999888877764
No 294
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.7e-21 Score=181.73 Aligned_cols=160 Identities=12% Similarity=0.037 Sum_probs=117.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCcccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig~vf 112 (421)
.+++++.|++..+++++||++++|+ ++||+|+||||||||+++|+|+. |+.|.|.+||.+.. ++.++|++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 4678888877889999999999999 99999999999999999999999 99999999998653 34689999
Q ss_pred CCCCCCccchHHHHHHhhhcccccccc------cccccc-ccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVP------IYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p------~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
|++.+++..|+.+|+.+.......... ...... .............||+.|++++ ..+|.++++|||+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-----~~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW-----MSKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH-----hcCCCEEEEeCCC
Confidence 999888889999999864211000000 000000 0000001111234899999999 9999999999999
Q ss_pred cCccHHHHHHHH---HHHHHcCCCH
Q 014621 186 GGVHFDLVKRVF---RDIQRVGQEP 207 (421)
Q Consensus 186 s~LD~~~~rrIl---rdl~~~G~ti 207 (421)
+++|+.....+. ++++++|.|+
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEE
Confidence 999999776655 4443445443
No 295
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.2e-21 Score=214.60 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=146.0
Q ss_pred eeeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
.--.++++|.|+ ...+|+++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.++. ++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHH
Confidence 345788999985 3569999999999999 99999999999999999999999 99999999999764 45
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcccc---cc--------------cc-ccccccccccccccccccCceEEEeehhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKA---VQ--------------VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i~--------------~p-~~~~~~~~~~~~~~~~~~~qrVlIaegl~ 168 (421)
.+++++|++.+++ .|+++|+........ +. .| -++....+ .+........||+.|||++
T Consensus 532 ~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARal- 608 (694)
T TIGR01846 532 QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARAL- 608 (694)
T ss_pred hCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHH-
Confidence 7999999999886 699999986422110 00 00 00100000 0111122234999999999
Q ss_pred hhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 169 ~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +|+|+ .+.+. .||++++|++|++.+.+++.+++
T Consensus 609 ----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 609 ----VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred ----HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeCCHHHHH
Confidence 889999999999999999998888766654 46776 55555 49999999999999999887774
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=207.04 Aligned_cols=183 Identities=10% Similarity=0.076 Sum_probs=138.0
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC-
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR- 116 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~- 116 (421)
-.+++++.|+...+++++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++. +.++|++|++.
T Consensus 321 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~~~ 393 (530)
T PRK15064 321 EVENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDHAY 393 (530)
T ss_pred EEEeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEcccccc
Confidence 46788888988889999999999999 99999999999999999999999 89999999873 46899999974
Q ss_pred -CCccchHHHHHHhhhcccccccc------ccccc--cccccccccccccCceEEEeehhhhhhhccCCccceEEEEecC
Q 014621 117 -LTDYDTLLENIRGLKEGKAVQVP------IYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (421)
Q Consensus 117 -l~~~~tv~enl~~l~~~~~i~~p------~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~ 187 (421)
+++..++.+++............ ...+. ..............||+.|++++ ...|.++++||||++
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al-----~~~p~lllLDEPt~~ 468 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM-----MQKPNVLVMDEPTNH 468 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCC
Confidence 45567899988653211100000 00100 00000011111234899999999 889999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEe-ecCCcc
Q 014621 188 VHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTA 233 (421)
Q Consensus 188 LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~-p~~~~a 233 (421)
||+.....+...+.+.+.|+ .+.+.++||+++++++|.+. ..+...
T Consensus 469 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 469 MDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 99999888877776655566 78889999999999999886 444433
No 297
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.6e-21 Score=178.80 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=145.1
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Cccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~v 111 (421)
.++++..||...+++++|+++++|+ +.+|+||||||||||+.+++.++ +++|.|.+||+++.. +++...
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 4567788899999999999999999 99999999999999999999999 899999999998752 456777
Q ss_pred cCCCCCCccchHHHHHHhhhc----cccccc---------------cccccccccccccccccccCceEEEeehhhhhhh
Q 014621 112 FDDPRLTDYDTLLENIRGLKE----GKAVQV---------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l~~----~~~i~~---------------p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d 172 (421)
-|........||++-+.|.+- |+.... ...+....+.+| ...||+.||.-+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSG-----GQrQRAfIAMVl----- 150 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSG-----GQRQRAFIAMVL----- 150 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhccc-----chhhhhhhheee-----
Confidence 787777778899999988642 211100 001111112222 234888888877
Q ss_pred ccCCccceEEEEecCccHHHHHH---HHHHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKR---VFRDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rr---Ilrdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+-...+.++|||-..||...... ++|++.++ |+|+ ...+..|+|++..|.+|+++.+|.+.+++
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 88889999999999999986554 45777666 9998 78889999999999999999999888886
No 298
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=1.6e-21 Score=229.03 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=147.8
Q ss_pred eeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
....++++|.|.. .++|+|+||+|++|+ .+||+|+||||||||+++|.+++ |++|.|.+||.++. |+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 4567899999953 479999999999999 99999999999999999999999 99999999999864 56
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc--ccc----c-ccccc------cccccccc---ccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQ----V-PIYDF------KSSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~----~-p~~~~------~~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
.+++++|+|.+|+. |+++||....... .+. . ...++ .....++. .......||+.||||+
T Consensus 1314 ~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL--- 1389 (1622)
T PLN03130 1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL--- 1389 (1622)
T ss_pred ccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH---
Confidence 79999999999974 9999997542110 000 0 00000 00011111 1122245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||+|+++|..+.+.|.+.+.+ +++|+ .+.+.. ||+|++|++|+|.+.+.+.+++
T Consensus 1390 --Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1390 --LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred --HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 789999999999999999998888776665 37777 555544 8999999999999999999986
No 299
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=3.3e-21 Score=209.48 Aligned_cols=188 Identities=13% Similarity=0.094 Sum_probs=144.1
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC--eeEEEECCeecC---CCccccccCC
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYNDS---SRIIDGNFDD 114 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~--~G~I~~Dg~~~~---~~~ig~vfq~ 114 (421)
++++..|+++.+|+++|+++++|+ ++||+||||||||||+++|+|.+ |+ +|.|.+||.+.. ++.++|++|+
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 446677888899999999999999 99999999999999999999998 64 899999998753 3568999999
Q ss_pred CCCCccchHHHHHHhhhccc---cccc-----cc------ccccc--cccccc----ccccccCceEEEeehhhhhhhcc
Q 014621 115 PRLTDYDTLLENIRGLKEGK---AVQV-----PI------YDFKS--SSRIGY----RTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~~~---~i~~-----p~------~~~~~--~~~~~~----~~~~~~~qrVlIaegl~~L~d~l 174 (421)
+.+++..|+.|++.+....+ .... .. ..... ....+. .......||+.|++++ ..
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL-----~~ 223 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM-----LI 223 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH-----Hh
Confidence 99999999999997642110 0000 00 00000 000111 1122245999999999 88
Q ss_pred CCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------H-HHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------E-EIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~-~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|.++++||||++||.....+++ ++++++|+|+ . ..+.+++|+++.+.+|++...++..+++
T Consensus 224 ~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 99999999999999999776554 6666678888 2 2467899999999999999999887764
No 300
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=1.2e-21 Score=229.38 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=147.6
Q ss_pred eeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
....++++|.|+. .++|+|+||+|++|+ .+||+|+||||||||+++|.+++ |++|.|.+||.++. |+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 3467899999953 579999999999999 99999999999999999999999 99999999999764 56
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc--cccc-----ccccc------ccccccc--c-ccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK--AVQV-----PIYDF------KSSSRIG--Y-RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~--~i~~-----p~~~~------~~~~~~~--~-~~~~~~~qrVlIaegl~~L 170 (421)
.+++++|+|.+|+ .|+++||....... .+.. ...++ .....++ + .......||+.|||++
T Consensus 1311 ~i~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL--- 1386 (1495)
T PLN03232 1311 VLSIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL--- 1386 (1495)
T ss_pred hcEEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH---
Confidence 7999999999997 59999997542110 0000 00000 0001111 1 1112245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||+|+++|..+.+.|.+.+.+ +++|+ .+.+.. ||+|++|++|+|.+.+.+.+++
T Consensus 1387 --Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1387 --LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred --HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 789999999999999999998888777765 37777 555554 8999999999999999998885
No 301
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=2.8e-21 Score=206.99 Aligned_cols=188 Identities=20% Similarity=0.198 Sum_probs=142.1
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
-..++++|.|+. ..+|+++||++++|+ .++|+|+||||||||+++|+|++ |++|.|.+||.++. ++
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 457789999853 579999999999999 99999999999999999999999 89999999998754 35
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccc---ccc-------c--cccccc--ccccccc---ccccccCceEEEeehhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK---AVQ-------V--PIYDFK--SSSRIGY---RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~---~i~-------~--p~~~~~--~~~~~~~---~~~~~~~qrVlIaegl~~ 169 (421)
.++|++|+|.+|+ .|+++|+....... .+. . ....+. .....+. .......||+.+||++
T Consensus 415 ~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal-- 491 (576)
T TIGR02204 415 RMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI-- 491 (576)
T ss_pred hceEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH--
Confidence 6999999999885 69999998643211 000 0 000000 0011111 1112245999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.-+|.++++||||+++|+.+.+.+.+.+.+ +++|+ .+.+ +.+|+|+++.+|++.+.+.+.++
T Consensus 492 ---~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 492 ---LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred ---HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEeeecHHHH
Confidence 789999999999999999987776655443 46776 4444 56999999999999988877765
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=4.4e-21 Score=225.79 Aligned_cols=188 Identities=10% Similarity=-0.003 Sum_probs=145.3
Q ss_pred eeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccc
Q 014621 39 IEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (421)
Q Consensus 39 v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig 109 (421)
-.+++++.|+ ++.+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.+|
T Consensus 930 ~I~nLsK~y~~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 930 CVKNLVKIFEPSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred EEEeEEEEecCCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3667888884 5789999999999999 99999999999999999999999 99999999998763 35689
Q ss_pred cccCCCCCCccchHHHHHHhhhccccccc---ccccccccccccc---------ccccccCceEEEeehhhhhhhccCCc
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
+++|++.+++..|+.+|+.+....+.... ........+..+. +......||+.||+|+ ..+|.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL-----i~~Pk 1081 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF-----VGDAK 1081 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-----HcCCC
Confidence 99999999999999999987532111100 0000000011110 1111234999999999 99999
Q ss_pred cceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 178 IDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+.++||||+++|+...+.+ +++++ +|+|+ ++.+..+||++++|.+|++...+...++
T Consensus 1082 VLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1082 VVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999876655 45553 48887 8889999999999999999887765543
No 303
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=4.6e-21 Score=202.45 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=131.2
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccccCCC---CCC
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~vfq~p---~l~ 118 (421)
.+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 36999999999999 99999999999999999999999 89999999998653 24589999997 477
Q ss_pred ccchHHHHHHhhhc-c-cc----cc--c-ccccccccccccc----------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 119 DYDTLLENIRGLKE-G-KA----VQ--V-PIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 119 ~~~tv~enl~~l~~-~-~~----i~--~-p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+..|+.+|+.+... . .. .. . ...........+. .......||+.||+++ ..+|.++
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al-----~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL-----MTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH-----hhCCCEE
Confidence 88899999975311 0 00 00 0 0000000011110 1111234999999999 8999999
Q ss_pred eEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCccc
Q 014621 180 LRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 180 L~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aD 234 (421)
++||||++||+...+.+ ++++.++|.|+ ++.+.++||+++++++|++...+...+
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999976654 56666668887 788899999999999999876554433
No 304
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-21 Score=201.35 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=142.9
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcccc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~ 110 (421)
.+++++.|++ .++++++||++++|+ .++|+|+||||||||++.|+|++ |+.|+|.+||.+.. ++++++
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 5688998864 499999999999999 99999999999999999999999 79999999998654 467999
Q ss_pred ccCCCCCCccchHHHHHHhhhccc---ccc-----ccccccccc-----cccc--cccc-cccCceEEEeehhhhhhhcc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKEGK---AVQ-----VPIYDFKSS-----SRIG--YRTL-EVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~~~---~i~-----~p~~~~~~~-----~~~~--~~~~-~~~~qrVlIaegl~~L~d~l 174 (421)
+.|+|.++. .|+++|+.+..... .+. .-..++-.. ...+ +... ....||+.++|++ .-
T Consensus 400 v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl-----l~ 473 (559)
T COG4988 400 VSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL-----LS 473 (559)
T ss_pred eCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh-----cC
Confidence 999998875 69999998754321 000 001111111 1111 1111 1234999999999 66
Q ss_pred CCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+.+.+.||||+++|.++...++.-+.+ +++|+ ......-+|+|++|++|++.+++.+.++-
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 7899999999999999998877765544 35666 22334457999999999999999988884
No 305
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.7e-21 Score=202.40 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=131.4
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccccCCCC---CC
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~vfq~p~---l~ 118 (421)
.+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++. ++
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 48999999999999 99999999999999999999999 89999999998653 246899999974 78
Q ss_pred ccchHHHHHHhhhccc----c--ccc-cccc--ccccccccc----------ccccccCceEEEeehhhhhhhccCCccc
Q 014621 119 DYDTLLENIRGLKEGK----A--VQV-PIYD--FKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~----~--i~~-p~~~--~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
+..|+.+|+....... . ... ...+ .......+. .......||+.|++++ ..+|.++
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al-----~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL-----SEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH-----ccCCCEE
Confidence 8899999987531100 0 000 0000 000011110 1111234999999999 8999999
Q ss_pred eEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCc
Q 014621 180 LRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~ 232 (421)
++||||+++|+...++++ ++++++|.|+ ++.+.++||++++|++|.+...+..
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~ 480 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcc
Confidence 999999999999876654 6667778888 7889999999999999998755533
No 306
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.8e-22 Score=202.32 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=160.4
Q ss_pred CCCCCccccccccceeeeeecCcceecC---eeeeeeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHH
Q 014621 9 ADSPRRRPGLLRDQVQLVKKKDSDRYEI---VPIEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (421)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~y~~---~~v~~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~ 83 (421)
..|-+|...++...+....+ ...+.. .-..++++|+|.+. ++|+|+||++++|| -++|+|+||||||||+
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~--~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTll 381 (573)
T COG4987 307 IASARRLNDILDQKPEVTFP--DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTLL 381 (573)
T ss_pred HHHHHHHhhhccCCcccCCC--ccccCCccceeeeccceeecCCCccchhhccceeecCCC---eEEEECCCCCCHHHHH
Confidence 34555777777777655555 222322 24788999999654 69999999999999 9999999999999999
Q ss_pred HHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---c-------ccc--cccc
Q 014621 84 EKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---V-------QVP--IYDF 143 (421)
Q Consensus 84 r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i-------~~p--~~~~ 143 (421)
+.|.|.. |++|+|.++|.+.. ++.++++.|.+.+|+ .|+++|+........ + ... ..+.
T Consensus 382 qLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence 9999999 99999999997543 346889999998886 689999976543211 0 000 0000
Q ss_pred --cccccc--cccc-ccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHH
Q 014621 144 --KSSSRI--GYRT-LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEII 211 (421)
Q Consensus 144 --~~~~~~--~~~~-~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi 211 (421)
...... +++. ...+.+|+.|+|.+ ..+..+.++||||.+||+.+.++++..+-+ +|+|+ .-.-
T Consensus 461 p~gl~t~lge~G~~LSGGE~rRLAlAR~L-----L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~ 535 (573)
T COG4987 461 PDGLNTWLGEGGRRLSGGERRRLALARAL-----LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG 535 (573)
T ss_pred hhhhhchhccCCCcCCchHHHHHHHHHHH-----HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 000111 1122 12245899999999 667789999999999999999999987765 48888 1112
Q ss_pred HHHhceEEEccCcEEeecCCcccEE
Q 014621 212 HQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 212 ~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
-+.||++++|++|++.+++.++.+.
T Consensus 536 le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 536 LERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred HhhcCEEEEEECCeeeecCCHHhhh
Confidence 3578999999999999999999986
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=3.3e-21 Score=224.66 Aligned_cols=190 Identities=16% Similarity=0.166 Sum_probs=145.5
Q ss_pred eeeeeeeEEEeC---cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C---------------------
Q 014621 37 VPIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--------------------- 91 (421)
Q Consensus 37 ~~v~~~ls~~~g---~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--------------------- 91 (421)
....++++|.|. +.++|+++||++++|+ .+||+|+||||||||++.|.|+. |
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 456789999995 3579999999999999 99999999999999999999999 7
Q ss_pred ---------------------------------CeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhh
Q 014621 92 ---------------------------------SIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLK 131 (421)
Q Consensus 92 ---------------------------------~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~ 131 (421)
++|.|.+||.++. |+.++|++|+|.+|+ .|+++||.+..
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC
Confidence 5999999999764 567999999999985 79999998864
Q ss_pred ccc---cccc-----cccccc----c--cccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHH
Q 014621 132 EGK---AVQV-----PIYDFK----S--SSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK 194 (421)
Q Consensus 132 ~~~---~i~~-----p~~~~~----~--~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~r 194 (421)
... .+.. ...++- . ...+|. .......||+.||||+ .-+|.++++||+|++||..+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-----lr~p~ILLLDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-----LREPKILLLDEATSSLDSNSEK 1395 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEEeCcccccCHHHHH
Confidence 311 1100 000110 0 111111 1122245999999999 8899999999999999999888
Q ss_pred HHHHHHHH----cCCCH------HHHHHHHhceEEEccC----cE-EeecCCcccEE
Q 014621 195 RVFRDIQR----VGQEP------EEIIHQISETVYPMYK----AF-IEPDLQTAHIK 236 (421)
Q Consensus 195 rIlrdl~~----~G~ti------~~vi~~~~d~V~~m~~----g~-I~p~~~~aDii 236 (421)
.+.+.+.+ +|+|+ ...+ +.||++++|++ |. +.+.|.+.+++
T Consensus 1396 ~I~~~L~~~~~~~~~TvIiIaHRlsti-~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1396 LIEKTIVDIKDKADKTIITIAHRIASI-KRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHhccCCCEEEEEechHHHH-HhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 77755543 47776 4444 45999999999 88 45888888874
No 308
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.2e-21 Score=215.82 Aligned_cols=214 Identities=19% Similarity=0.176 Sum_probs=162.4
Q ss_pred CccccccccceeeeeecC----cceecCeeeeeeeEEEeC---cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHH
Q 014621 13 RRRPGLLRDQVQLVKKKD----SDRYEIVPIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEK 85 (421)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~----~~~y~~~~v~~~ls~~~g---~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~ 85 (421)
.+...++.++..+..... ...++.+.-.++++|.|. +..+++|+||++++|+ .++|+|||||||||.+.+
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTvI~L 1035 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTVISL 1035 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHHHHH
Confidence 355667777765555441 224455678899999996 4679999999999999 999999999999999999
Q ss_pred HHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhcccc---c--------------ccc-
Q 014621 86 VLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA---V--------------QVP- 139 (421)
Q Consensus 86 L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~---i--------------~~p- 139 (421)
|-... |++|.|.+||+++. |++++.+-|+|.+|+ .|++|||.+....-. + ..|
T Consensus 1036 LeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1036 LERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred HHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcC
Confidence 99999 99999999999865 578999999999997 699999998732200 0 001
Q ss_pred ccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHH--HcCCCHHHHH-----H
Q 014621 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ--RVGQEPEEII-----H 212 (421)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~--~~G~ti~~vi-----~ 212 (421)
-||-..+++ |.+.....+||++||||+ .-+|.++|+||.|++||.+..+-+...+. ..|+|-.-++ -
T Consensus 1115 GyDT~vGer-G~QLSGGQKQRIAIARAi-----lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI 1188 (1228)
T KOG0055|consen 1115 GYDTRVGER-GVQLSGGQKQRIAIARAI-----LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI 1188 (1228)
T ss_pred cccCccCcc-cCcCCchHHHHHHHHHHH-----HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh
Confidence 122222211 112223345999999999 89999999999999999998776665443 3477652222 2
Q ss_pred HHhceEEEccCcEEeecCCcccEE
Q 014621 213 QISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 213 ~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+-||.++++.+|+|.|.|.+..++
T Consensus 1189 qnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1189 QNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred hcCCEEEEEECCEEEecccHHHHH
Confidence 458999999999999999999986
No 309
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=3.7e-21 Score=225.56 Aligned_cols=190 Identities=13% Similarity=0.092 Sum_probs=145.7
Q ss_pred eeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
.-..++++|.|.. ..+|+||||+|++|+ .+||+|+||||||||+++|.+++ |++|.|.+||.++. |+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 4568899999954 469999999999999 99999999999999999999999 99999999999864 56
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcc--ccccc-----cccccc------ccccccc---ccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEG--KAVQV-----PIYDFK------SSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~--~~i~~-----p~~~~~------~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
.+++++|+|.+|+. |+++||...... ..+.. ...++- ....++. .......||+.|||++
T Consensus 1385 ~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL--- 1460 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL--- 1460 (1560)
T ss_pred cceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH---
Confidence 79999999999974 999999653210 00000 000000 0011111 1122245999999999
Q ss_pred hhccC-CccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLR-PLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~-p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+ +.++++||+|+++|..+.+.+.+-+.+ +++|+ .+.+. .||+|++|.+|+|.+.+.+.+++
T Consensus 1461 --L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1461 --LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred --hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 664 799999999999999998888766654 37777 44443 48999999999999999988885
No 310
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=204.49 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=141.9
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------- 104 (421)
.+++++.|+ ...+++++||++++|+ +++|+|+||||||||+++|+|++ |+.|.+.+||++..
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 355556553 3579999999999999 99999999999999999999999 89999999998753
Q ss_pred -CCccccccCCCCCCccchHHHHHHhhhcccccc---ccccccccccccc---------cccccccCceEEEeehhhhhh
Q 014621 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 105 -~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~---~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~ 171 (421)
++.++|+||++.+++..++.+|+.......... .........+..+ .+......||+.|++++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL---- 159 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL---- 159 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH----
Confidence 246899999999999999999997532110000 0000000001111 01111234899999999
Q ss_pred hccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
..+|.++++|||++++|+...+.+ +++++++|.|+ .+.+. +||+++.|++|++.+.+...+..
T Consensus 160 -~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 160 -MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred -hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 899999999999999999976655 46666568877 56554 69999999999999999988875
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1.5e-21 Score=174.87 Aligned_cols=174 Identities=14% Similarity=0.218 Sum_probs=126.0
Q ss_pred eEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccccCC
Q 014621 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDD 114 (421)
Q Consensus 43 ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~ 114 (421)
+.+.-++..+|+++||.+.+|| .++|+||||||||||+|+++.+. |++|.+.+.|.+.+ |.+++|..|.
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HHhhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 3344467889999999999999 99999999999999999999999 99999999999764 5679999999
Q ss_pred CCCCccchHHHHHHhhhc--cccccccc--------cccccccccc--cccccccCceEEEeehhhhhhhccCCccceEE
Q 014621 115 PRLTDYDTLLENIRGLKE--GKAVQVPI--------YDFKSSSRIG--YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~--~~~i~~p~--------~~~~~~~~~~--~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~D 182 (421)
|.+|. .||++|+.++-. .... .+. ++........ ......+.||+.++|-+ ...|.++++|
T Consensus 86 paLfg-~tVeDNlifP~~~r~rr~-dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L-----q~~P~ILLLD 158 (223)
T COG4619 86 PALFG-DTVEDNLIFPWQIRNRRP-DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL-----QFMPKILLLD 158 (223)
T ss_pred ccccc-cchhhccccchHHhccCC-ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh-----hcCCceEEec
Confidence 99986 799999987521 1110 110 1100000000 01112245899999999 9999999999
Q ss_pred EEecCccHHHHHHH---HHH-HHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 183 SVTGGVHFDLVKRV---FRD-IQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 183 Epts~LD~~~~rrI---lrd-l~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
|+|++||+...+.| +-. +.++...+ .+..-+.+|+++-+..|.+
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999876543 333 33445554 4444567777777777655
No 312
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.83 E-value=2.3e-20 Score=171.81 Aligned_cols=169 Identities=46% Similarity=0.741 Sum_probs=142.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecCC---CccccccCCCCCCccchHHHHHHhhhccccccccc
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~Dg~~~~~---~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~ 140 (421)
++||.|+||||||||++.|...+ +....|++|+|+... +.....++++..++...+.++|..++.+..+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 357789999998643 22345677887788888999999888888889999
Q ss_pred cccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccH-HHHHHHHHHHHHcCCCHHHHHHHHhceEE
Q 014621 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (421)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~-~~~rrIlrdl~~~G~ti~~vi~~~~d~V~ 219 (421)
|++..+.+.+.......+..|+|+||++++++++++.+|++++++++.|. +..|++.||+.++|++..+++.++ . +.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99998877664445677889999999999999999999999999999998 999999999999999999999995 3 45
Q ss_pred EccCcE-EeecCCcccEEEe
Q 014621 220 PMYKAF-IEPDLQTAHIKII 238 (421)
Q Consensus 220 ~m~~g~-I~p~~~~aDiiI~ 238 (421)
+++..+ +.|.+..||++++
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 555544 5678999999864
No 313
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=1.1e-20 Score=173.73 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=112.1
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~ 119 (421)
.++++.||++.+++++ +++++|+ +++|+||||||||||+++|+|++ |++|.|.++|.. +++.+|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID--- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC---
Confidence 5788889989999985 9999999 99999999999999999999999 999999999853 677777542
Q ss_pred cchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH--
Q 014621 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF-- 197 (421)
Q Consensus 120 ~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl-- 197 (421)
.++++ .||+.+++++ ..+|.+.++|||++++|+...+.+.
T Consensus 72 ----------------------------LSgGq-----~qrv~laral-----~~~p~lllLDEPts~LD~~~~~~l~~~ 113 (177)
T cd03222 72 ----------------------------LSGGE-----LQRVAIAAAL-----LRNATFYLFDEPSAYLDIEQRLNAARA 113 (177)
T ss_pred ----------------------------CCHHH-----HHHHHHHHHH-----hcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 22322 3788899999 8999999999999999999876554
Q ss_pred -HHHHHcC-CCH------HHHHHHHhceEEEccCcE
Q 014621 198 -RDIQRVG-QEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 198 -rdl~~~G-~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
+++++++ .|+ ++.+.++||++++++++.
T Consensus 114 l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 114 IRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 5555554 776 778889999999997663
No 314
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=3.5e-21 Score=177.96 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=107.2
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------CCccccccCCCC-
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR- 116 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------~~~ig~vfq~p~- 116 (421)
+...+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 45679999999999999 99999999999999999999999 89999999998652 235899999984
Q ss_pred CCccchHHHHHHhhhccccccc---cccccccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 117 LTDYDTLLENIRGLKEGKAVQV---PIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~---p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
.+...|+.+|+.+......... ...........+ .+......||+.|++++ ..+|.+.++|||
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llllDEP 154 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV-----AMRPDVLLLDEP 154 (190)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCC
Confidence 2334699999976421100000 000000000111 01111234999999999 899999999999
Q ss_pred ecCccHHHHHHHH---HHHHHcCCC
Q 014621 185 TGGVHFDLVKRVF---RDIQRVGQE 206 (421)
Q Consensus 185 ts~LD~~~~rrIl---rdl~~~G~t 206 (421)
++++|+...+++. ++++++|.|
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCE
Confidence 9999999877655 444444544
No 315
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=9.1e-22 Score=188.11 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=138.4
Q ss_pred eeeeecCcceecC-------eeeeeee-EEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee
Q 014621 24 QLVKKKDSDRYEI-------VPIEDTL-SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (421)
Q Consensus 24 ~l~~~~~~~~y~~-------~~v~~~l-s~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G 94 (421)
|+.+++++|.|-. +...+++ ...+....|++||||+|++|+ ++|.+|+|||||||++|+|.|++ |++|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCC
Confidence 6677888888832 2223332 233445679999999999999 99999999999999999999999 9999
Q ss_pred EEEECCeecCC------Ccccccc--------CCCCCCccchHHHHHHhhhcc-----cccccccccccccccccccccc
Q 014621 95 VITMDNYNDSS------RIIDGNF--------DDPRLTDYDTLLENIRGLKEG-----KAVQVPIYDFKSSSRIGYRTLE 155 (421)
Q Consensus 95 ~I~~Dg~~~~~------~~ig~vf--------q~p~l~~~~tv~enl~~l~~~-----~~i~~p~~~~~~~~~~~~~~~~ 155 (421)
.|.++|++..+ +.+++++ |.| +.+...+.+.|...... ...-..+.+....-+..-+...
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LS 158 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLS 158 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhcc
Confidence 99999997543 2344433 333 33444444444321100 0000000111100000000111
Q ss_pred c-cCceEEEeehhhhhhhccCCccceEEEEecCccHHHH---HHHHHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 014621 156 V-PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV---KRVFRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 156 ~-~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~---rrIlrdl~~~-G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+ ...|+=++.|+ ..+|.++++||||-+||+... ++.+++.+++ +.|+ ++-+.++|+||+.++.|
T Consensus 159 lGqRmraeLaaaL-----Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 159 LGQRMRAELAAAL-----LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred chHHHHHHHHHHh-----cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 1 12345567777 789999999999999999754 5556777664 8888 78899999999999999
Q ss_pred EEeecCCcccEEEeCCCCCcc
Q 014621 225 FIEPDLQTAHIKIINKFNPFT 245 (421)
Q Consensus 225 ~I~p~~~~aDiiI~~~~~p~~ 245 (421)
++.-++..+.+ ..+|-|+.
T Consensus 234 qlv~dg~l~~l--~~~f~~~k 252 (325)
T COG4586 234 QLVFDGTLAQL--QEQFGPYK 252 (325)
T ss_pred cEeecccHHHH--HHHhCCce
Confidence 99988777666 33444443
No 316
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=6.3e-21 Score=202.47 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=121.1
Q ss_pred eeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC------CCccc
Q 014621 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (421)
Q Consensus 38 ~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------~~~ig 109 (421)
-..++++|.|++ ..+|+|+||++++|+ .++|+||||||||||++.|+|+. |++|.|.+||.++. ++.++
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 457899999964 569999999999999 99999999999999999999999 99999999998764 46799
Q ss_pred cccCCCCCCccchHHHHHHhhhcc---cccccc-----ccc----cc--ccccccc---ccccccCceEEEeehhhhhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEG---KAVQVP-----IYD----FK--SSSRIGY---RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~---~~i~~p-----~~~----~~--~~~~~~~---~~~~~~~qrVlIaegl~~L~d 172 (421)
|++|+|.+|+ .|+++||...... +.+... ..+ +. .....+. .......||+.|||++
T Consensus 412 ~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal----- 485 (529)
T TIGR02868 412 VFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL----- 485 (529)
T ss_pred EEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH-----
Confidence 9999999986 5999999875321 100000 000 00 0111111 1112245999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~ 202 (421)
.-+|.++++||||+++|+++.+++.+.+.+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 889999999999999999999988877754
No 317
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=1.3e-20 Score=199.46 Aligned_cols=173 Identities=20% Similarity=0.204 Sum_probs=128.8
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccccCCC---CCCc
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~vfq~p---~l~~ 119 (421)
+++++||++++|+ ++||+|+||||||||+++|+|++ |++|.|.++|.++. ++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5899999999999 99999999999999999999999 89999999998653 23589999985 4777
Q ss_pred cchHHHHHHhhhc---c---ccccc--c------ccccc--cccccccccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 120 YDTLLENIRGLKE---G---KAVQV--P------IYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 120 ~~tv~enl~~l~~---~---~~i~~--p------~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
..++.+|+..... . ..... . .+.+. ..............||+.|++++ ..+|.++++||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al-----~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL-----EASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH-----hhCCCEEEECC
Confidence 7889888853210 0 00000 0 00110 00000001112234999999999 89999999999
Q ss_pred EecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCc
Q 014621 184 VTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 184 pts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~ 232 (421)
||++||+...+.+ +++++++|.|+ ++.+.++||+++++++|++...+..
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999976654 46666678887 7889999999999999999765544
No 318
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-20 Score=198.51 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=127.6
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCccccc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~ig~v 111 (421)
+++++.+ ..+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++|.+.. ++.++|+
T Consensus 254 ~~l~~~~--~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~ 328 (491)
T PRK10982 254 RNLTSLR--QPSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALV 328 (491)
T ss_pred eCccccc--CcccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEc
Confidence 4444442 358999999999999 99999999999999999999999 89999999997653 2348899
Q ss_pred cCCC---CCCccchHHHH-----HHhhhccccc-c-c----------cccccc--cccccccccccccCceEEEeehhhh
Q 014621 112 FDDP---RLTDYDTLLEN-----IRGLKEGKAV-Q-V----------PIYDFK--SSSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 112 fq~p---~l~~~~tv~en-----l~~l~~~~~i-~-~----------p~~~~~--~~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
+|++ .+++..++.+| +......... . . ....+. .......+......||+.|++++
T Consensus 329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al-- 406 (491)
T PRK10982 329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL-- 406 (491)
T ss_pred CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH--
Confidence 9985 35666666555 3221110000 0 0 000000 00000001111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
..+|.++++||||+++|+...+.+ ++++.++|.|+ ++.+..+||++++|++|++..
T Consensus 407 ---~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 407 ---LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred ---hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999987665 56667778888 788889999999999999863
No 319
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.83 E-value=1.2e-20 Score=200.29 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=131.1
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
-..++++|.|++ +.+|+++|+++++|+ .++|+|+||||||||++.|+|+. |+.|.|.+||.+.. ++.
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 457789999965 479999999999999 99999999999999999999999 99999999998754 457
Q ss_pred cccccCCCCCCccchHHHHHHhhhcc---ccccc-----cccc----cc--ccccccc---ccccccCceEEEeehhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEG---KAVQV-----PIYD----FK--SSSRIGY---RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~---~~i~~-----p~~~----~~--~~~~~~~---~~~~~~~qrVlIaegl~~L 170 (421)
+++++|+|.+|+ .|+++|+...... ..+.. ...+ +. .....+. .......||+.|||++
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal--- 473 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF--- 473 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH---
Confidence 999999999987 6999999864321 00000 0000 00 0011111 1112235999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEc
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPM 221 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m 221 (421)
.-+|.++++||||+++|+.+.+++.+.+.+ +|+|+ .+.+ +.||++++|
T Consensus 474 --~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 474 --LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred --hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-HhCCEEEeC
Confidence 889999999999999999999988766654 46776 4544 458887764
No 320
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=5.9e-21 Score=223.97 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=145.9
Q ss_pred eeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CC
Q 014621 37 VPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (421)
Q Consensus 37 ~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~ 106 (421)
....++++|.|.. ..+|+||||++++|+ .+||+|+||||||||+++|.+++ |+.|.|.+||.++. |+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 3567899999964 579999999999999 99999999999999999999999 99999999999865 56
Q ss_pred ccccccCCCCCCccchHHHHHHhhhcc--cccc----c-ccccc------ccccccc--c-ccccccCceEEEeehhhhh
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEG--KAVQ----V-PIYDF------KSSSRIG--Y-RTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~--~~i~----~-p~~~~------~~~~~~~--~-~~~~~~~qrVlIaegl~~L 170 (421)
.+++++|+|.+|+ .|+++||...... ..+. . ...++ .....++ + .......||+.|||++
T Consensus 1361 ~i~iVpQdp~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL--- 1436 (1522)
T TIGR00957 1361 KITIIPQDPVLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL--- 1436 (1522)
T ss_pred cCeEECCCCcccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH---
Confidence 7999999999997 4999999732110 0000 0 00000 0001111 1 1112245999999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||+|+++|.++.+.+.+.+.+ +++|+ .+.+. -+|+|++|++|+|.+.+.+.+++
T Consensus 1437 --Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1437 --LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred --HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 789999999999999999998887777654 37777 44444 37999999999999999888874
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=1.9e-20 Score=199.76 Aligned_cols=181 Identities=12% Similarity=0.129 Sum_probs=131.0
Q ss_pred eeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCcc
Q 014621 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~i 108 (421)
-..++++|.|+. ..+|+++||++++|+ .++|+|+||||||||+++|+|+. |++|.|.+||.+.. ++.+
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 457789999854 579999999999999 99999999999999999999999 99999999999764 3578
Q ss_pred ccccCCCCCCccchHHHH--------HHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccce
Q 014621 109 DGNFDDPRLTDYDTLLEN--------IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~en--------l~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
++++|++.+|+. |+.+| +........... ..........|........||+.|||++ .-+|.+++
T Consensus 400 ~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal-----~~~~~ili 472 (547)
T PRK10522 400 SAVFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLAL-----AEERDILL 472 (547)
T ss_pred EEEecChhHHHH-hhccccCchHHHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHH-----hcCCCEEE
Confidence 999999987753 44444 110000000000 0000000000111222345999999999 88999999
Q ss_pred EEEEecCccHHHHHHHHHHHH----HcCCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 181 RVSVTGGVHFDLVKRVFRDIQ----RVGQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 181 ~DEpts~LD~~~~rrIlrdl~----~~G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
+||||+++|+....++.+.+. ..|.|+ .+. .+.||+++++++|++.+.
T Consensus 473 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 473 LDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEEEEEECCEEEEe
Confidence 999999999998887765443 247776 443 457999999999998755
No 322
>PLN02348 phosphoribulokinase
Probab=99.82 E-value=7.1e-20 Score=185.36 Aligned_cols=175 Identities=27% Similarity=0.495 Sum_probs=148.7
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-------------------CeeEEEECCeecCC----CccccccCCCCC
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSS----RIIDGNFDDPRL 117 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-------------------~~G~I~~Dg~~~~~----~~ig~vfq~p~l 117 (421)
...+++++|||.|+||||||||++.|...+. ....|++|||+... +..+..+.+|..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 4446689999999999999999999998872 23579999997542 223556677888
Q ss_pred CccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHH
Q 014621 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrI 196 (421)
++...+.+.|..++.++.+..|.|++..+.... ...+++.+++|+||++++++ .+++.+|++++++.+.|.+..|++
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 888888999999999999999999999876543 23466789999999999985 689999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014621 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 197 lrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
.|++.++|.+.+++.+++. .+.+.++.+|.|.+..||++|.
T Consensus 202 ~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 202 QRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999999988876 4589999999999999999984
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=2.1e-20 Score=171.19 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=138.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC-eecC--------CCccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN-YNDS--------SRIID 109 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg-~~~~--------~~~ig 109 (421)
.++++.++|++.||+++||++.+|+ +-+|+|||||||||++..|.|.. |+.|.+.++| .++. +..||
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 5688999999999999999999999 99999999999999999999999 9999999999 4543 34578
Q ss_pred cccCCCCCCccchHHHHHHhhhcccccccc------------ccc-cccccccccc-------cccccCceEEEeehhhh
Q 014621 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVP------------IYD-FKSSSRIGYR-------TLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 110 ~vfq~p~l~~~~tv~enl~~l~~~~~i~~p------------~~~-~~~~~~~~~~-------~~~~~~qrVlIaegl~~ 169 (421)
--||.|..|...|+++|+......++--.+ ..+ .....+.+.+ .....+|.+=|..-+
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll-- 162 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL-- 162 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee--
Confidence 889999999999999999865332211000 000 0000000000 001112443333333
Q ss_pred hhhccCCccceEEEEecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~---~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.-+|.++++|||++++--.. ..++++.++.+ .++ |+++.+++++|-+|++|.+...+...++
T Consensus 163 ---~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 163 ---AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred ---ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-ceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 77899999999999987654 34677777654 344 9999999999999999999988877776
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=3.3e-20 Score=198.19 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=133.5
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC-
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR- 116 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~- 116 (421)
-.+++++.|++..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++. ..++|++|++.
T Consensus 324 ~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~v~q~~~~ 396 (552)
T TIGR03719 324 EAENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAYVDQSRDA 396 (552)
T ss_pred EEeeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEEEeCCccc
Confidence 35678888988889999999999999 99999999999999999999999 89999998542 25899999974
Q ss_pred CCccchHHHHHHhhhcccccc-cccccccccccccc----------ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 117 LTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~-~p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+++..|+.+++.......... ............+. .......||+.|++++ ...|.++++||||
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al-----~~~p~lllLDEPt 471 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL-----KSGGNVLLLDEPT 471 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH-----hhCCCEEEEeCCC
Confidence 777889999998643210000 00000000111111 1111234999999999 8999999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccC-cEEe
Q 014621 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYK-AFIE 227 (421)
Q Consensus 186 s~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~-g~I~ 227 (421)
++||+.....+.+-+.+.+.|+ ++.+.++||++++|++ |.+.
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 9999999888877776643355 7888999999999986 4553
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=3.5e-20 Score=198.19 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=133.2
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCC-C
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-R 116 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p-~ 116 (421)
-.+++++.|+.+.++++|||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.+++. ..++|++|++ .
T Consensus 326 ~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~q~~~~ 398 (556)
T PRK11819 326 EAENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAYVDQSRDA 398 (556)
T ss_pred EEEeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEeCchhh
Confidence 36678888888889999999999999 99999999999999999999999 89999998542 2589999997 6
Q ss_pred CCccchHHHHHHhhhccccccc-ccccccccccccc----------ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 117 LTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~-p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+++..|+.+|+........... ...........+. .......||+.|++++ ..+|.++++||||
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al-----~~~p~lllLDEPt 473 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL-----KQGGNVLLLDEPT 473 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 7778899999976421100000 0000000011110 1111234899999999 8999999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccC-cEEe
Q 014621 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYK-AFIE 227 (421)
Q Consensus 186 s~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~-g~I~ 227 (421)
++||+.....+.+-+.+.+.|+ .+.+.++||+++.+++ |.+.
T Consensus 474 ~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 474 NDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9999998888777666543355 7888999999999986 6654
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.82 E-value=8.2e-21 Score=194.18 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=151.6
Q ss_pred CCCCccccccccceeeeeecCcceecCeeeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014621 10 DSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~~~~~~y~~~~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.++.+++.|.+.+-.|.+++.+. ++ .-..++++++|||.+++|+ .+||+||||||||||+|.|.|.
T Consensus 320 p~~~~~m~LP~P~g~L~Ve~l~~------~P-----Pg~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 320 PAAAERMPLPAPQGALSVERLTA------AP-----PGQKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ccccCCCCCCCCCceeeEeeeee------cC-----CCCCCcceecceeEecCCc---eEEEECCCCccHHHHHHHHHcc
Confidence 34556788888887777776432 11 1235689999999999999 9999999999999999999999
Q ss_pred C-CCeeEEEECCeecC-------CCccccccCCCCCCccchHHHHHHhhhccccc-----------------ccc-cccc
Q 014621 90 M-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV-----------------QVP-IYDF 143 (421)
Q Consensus 90 l-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i-----------------~~p-~~~~ 143 (421)
. |.+|.|.+||.++. .+++||.+|+-.+|+ -|+.+||+.......- ..| -||-
T Consensus 386 w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 386 WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred cccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 8 99999999998764 257999999999997 5999999875421110 001 1222
Q ss_pred ccccccccc-cccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH-----HHHHHHH
Q 014621 144 KSSSRIGYR-TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP-----EEIIHQI 214 (421)
Q Consensus 144 ~~~~~~~~~-~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti-----~~vi~~~ 214 (421)
..++ ++. ......||+.++|++ --+|.+.++|||.+.||..-...+ +..++.+|.|+ .-.+-..
T Consensus 465 ~iG~--~G~~LSgGQRQRIaLARAl-----YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 465 RIGE--GGATLSGGQRQRIALARAL-----YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred ccCC--CCCCCCchHHHHHHHHHHH-----cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 1111 111 112245999999999 779999999999999999855444 45666777776 2224456
Q ss_pred hceEEEccCcEEeecCCcccEE
Q 014621 215 SETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 215 ~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|++.+|++|.+...++..++.
T Consensus 538 ~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 538 VDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred cceeeeecCChHHhcCCHHHHH
Confidence 8999999999998777666653
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.82 E-value=1.4e-20 Score=177.57 Aligned_cols=167 Identities=10% Similarity=-0.020 Sum_probs=119.8
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-ECCeecCCCccccccCCCCCCccchHHHHHH
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~-~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
.+|++|||++++|+ ++||+||||||||||+++|+|++ |++|.|. +++.... +.+.+.+++..++.+|+.
T Consensus 1 ~vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHH
Confidence 37899999999999 99999999999999999999999 8999997 7765331 224566788889999998
Q ss_pred hhhccccccccc-c----ccc-cccccc---cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHH
Q 014621 129 GLKEGKAVQVPI-Y----DFK-SSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (421)
Q Consensus 129 ~l~~~~~i~~p~-~----~~~-~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrd 199 (421)
............ . ... ...... ........||+.+++++ ..+|.+.++|||++++|+...+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al-----~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINL-----LLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHH-----hcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 753211110000 0 000 000000 01111234899999999 889999999999999999887766544
Q ss_pred HHH--cCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 200 IQR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 200 l~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
+.+ ++.++ ++.+.++||++++|++|++...++
T Consensus 147 l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 186 (213)
T PRK15177 147 LACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCED 186 (213)
T ss_pred HHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCC
Confidence 432 24555 778889999999999999975543
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.82 E-value=2.7e-20 Score=199.07 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=133.3
Q ss_pred eeeeeeEEEeCc-----EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------
Q 014621 38 PIEDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (421)
Q Consensus 38 ~v~~~ls~~~g~-----~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~------- 104 (421)
--.++++|.|++ ..+|+++||++++|+ +++|+||||||||||++.|+|+. |++|.|.+||.+..
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 346889999964 259999999999999 99999999999999999999999 99999999998764
Q ss_pred CCccccccCCCCCCccchHHHHHHhhhccccccc-----ccccccccccccc----ccccccCceEEEeehhhhhhhccC
Q 014621 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV-----PIYDFKSSSRIGY----RTLEVPSSRIVIIEGIYALSEKLR 175 (421)
Q Consensus 105 ~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~-----p~~~~~~~~~~~~----~~~~~~~qrVlIaegl~~L~d~l~ 175 (421)
++.+++++|++.+|+ .++.+|.........+.. ...++-.....|. .......||+.|+|++ .-+
T Consensus 415 ~~~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal-----l~~ 488 (555)
T TIGR01194 415 RDLFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW-----LED 488 (555)
T ss_pred HhhCcEEccChhhhh-hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH-----HcC
Confidence 356899999998875 356555421000000000 0000000000010 1112245999999999 889
Q ss_pred CccceEEEEecCccHHHHHHHHHHH----HHcCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 176 PLIDLRVSVTGGVHFDLVKRVFRDI----QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 176 p~ldL~DEpts~LD~~~~rrIlrdl----~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
|.++++||||+++|+.+.+.+.+.+ ..+|+|+ .+.+ +.||+++++++|++.+...
T Consensus 489 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~~ 553 (555)
T TIGR01194 489 RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDTE 553 (555)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEecC
Confidence 9999999999999999988776443 3457887 4444 5799999999999976553
No 329
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.82 E-value=3e-20 Score=176.56 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=135.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecCCC---ccccc--cCCCCCCccchHHHHHHhhhc-ccc
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLKE-GKA 135 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~~~---~ig~v--fq~p~l~~~~tv~enl~~l~~-~~~ 135 (421)
++||+|+||||||||++.|.+++ + ....|++|||+.... ..+.. +..|..++...+.+.+..++. +..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 58999999999999999999998 3 346788899976532 22332 345677887778888888877 467
Q ss_pred ccccccccccccccccccccccCceEEEeehhhhhhhc------cCCccceEEEEecCccHH---HHHHHHHHHHHcCCC
Q 014621 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (421)
Q Consensus 136 i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~------l~p~ldL~DEpts~LD~~---~~rrIlrdl~~~G~t 206 (421)
+..|.|++..+.+.......+.+.+|+|+||+++|+++ +++.+|++++++++.|.. ..+|.+|+..++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999988776644444677899999999999864 889999999999999885 455666776677777
Q ss_pred HHHHHHH----------------HhceEEEccCcEEeecCCcccEEEeCC
Q 014621 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINK 240 (421)
Q Consensus 207 i~~vi~~----------------~~d~V~~m~~g~I~p~~~~aDiiI~~~ 240 (421)
...++++ |...+.++++.+|.|.+..||++|+.+
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 6554443 556789999999999999999999644
No 330
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.82 E-value=1.5e-20 Score=185.03 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=130.2
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
..+++++. ...+|+++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++| .++|++|++.+
T Consensus 41 ~i~nls~~--~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~l 109 (282)
T cd03291 41 FFSNLCLV--GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWI 109 (282)
T ss_pred EEEEEEEe--cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCcccc
Confidence 45666664 3579999999999999 99999999999999999999999 8999999988 48999999988
Q ss_pred CccchHHHHHHhhhcccc--ccc--ccccccc-cc--------ccc---cccccccCceEEEeehhhhhhhccCCccceE
Q 014621 118 TDYDTLLENIRGLKEGKA--VQV--PIYDFKS-SS--------RIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~~--i~~--p~~~~~~-~~--------~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
++ .++.+|+.+...... ... ....... .. ..+ ........||+.|++++ ..+|.++++
T Consensus 110 ~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL-----~~~p~iLiL 183 (282)
T cd03291 110 MP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV-----YKDADLYLL 183 (282)
T ss_pred cc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEE
Confidence 77 499999875321000 000 0000000 00 000 01111234899999999 889999999
Q ss_pred EEEecCccHHHHHHHHHHH---HHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 182 VSVTGGVHFDLVKRVFRDI---QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl---~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
|||++++|+.....++..+ ..+|.|+ .+.+ .+||++++|.+|.+...+...++
T Consensus 184 DEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 184 DSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred ECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999998776655322 1246676 4555 47999999999999887766665
No 331
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.82 E-value=1.6e-20 Score=178.21 Aligned_cols=169 Identities=17% Similarity=0.228 Sum_probs=122.3
Q ss_pred eEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--CCccccccCCCCCCc--cchHHHHHHhhhc
Q 014621 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (421)
Q Consensus 58 l~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--~~~ig~vfq~p~l~~--~~tv~enl~~l~~ 132 (421)
|++++|+ ++||+|+||||||||+++|+|++ |++|.|.+||.+.. ++.++|++|++.++. ..++.+|+.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4678999 99999999999999999999998 89999999998642 356899999987632 3688999865321
Q ss_pred cc--ccccc---ccc--ccccccccc---------ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH
Q 014621 133 GK--AVQVP---IYD--FKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV 196 (421)
Q Consensus 133 ~~--~i~~p---~~~--~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI 196 (421)
.. ....+ ... ....+..+. +......||+.|++++ ..+|.+.++|||++++|+.....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-----~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL-----ATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHH
Confidence 00 00000 000 000011110 1111124999999999 999999999999999999976655
Q ss_pred H---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 197 F---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 197 l---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
. +++.++|.|+ ++.+.++||+++++ +|++...+...++
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 4 5555568887 77788999999999 8999776655554
No 332
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=3e-20 Score=172.64 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=110.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---CCccccccCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---~~~ig~vfq~p 115 (421)
.+++++.|+...+++ +||++++|+ ++||+|+||||||||+++|+|+. |++|.|.++|.+.. .+.++|++|++
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 466777776665665 999999999 99999999999999999999998 99999999998653 24578999988
Q ss_pred CCCccchHHHHHHhhhcccccccccc------cccc-ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCc
Q 014621 116 RLTDYDTLLENIRGLKEGKAVQVPIY------DFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~p~~------~~~~-~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~L 188 (421)
.++...|+.+|+.+............ .... ..+..........||+.+++++ ..+|.+.++|||++++
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al-----~~~p~~lllDEP~~~L 154 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI-----ACQSDLWLLDEVETNL 154 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccC
Confidence 88888999999976432110000000 0000 0000001111234899999999 8899999999999999
Q ss_pred cHHHHHHHHHH
Q 014621 189 HFDLVKRVFRD 199 (421)
Q Consensus 189 D~~~~rrIlrd 199 (421)
|+.....+.+-
T Consensus 155 D~~~~~~l~~~ 165 (195)
T PRK13541 155 SKENRDLLNNL 165 (195)
T ss_pred CHHHHHHHHHH
Confidence 99986655543
No 333
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.81 E-value=7.5e-20 Score=171.73 Aligned_cols=177 Identities=36% Similarity=0.625 Sum_probs=151.6
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecC------CCccccccCCCCCCccchHHHHHHhhhc
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp--~~G~I~~Dg~~~~------~~~ig~vfq~p~l~~~~tv~enl~~l~~ 132 (421)
++|. ++||+|+||||||||+++|+++++ ..+.+.+|++... ....++.||+|..++...+.+.|..+..
T Consensus 4 ~~g~---vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 4 PKGI---IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCeE---EEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 4566 999999999999999999999984 6789999998643 2346788999999999888999999888
Q ss_pred cccccccccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHH
Q 014621 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (421)
Q Consensus 133 ~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi 211 (421)
+..+..|.|++....+.. +....++..++|+||.++++ ..+++.++++++++++.+.+..|++.|+...+|.+..+++
T Consensus 81 g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~ 159 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVI 159 (207)
T ss_pred CCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHH
Confidence 888999999987766533 33445678999999999987 4577889999999999999999999999998999999999
Q ss_pred HHHhceEEEccCcEEeecCCcccEEEeCCC
Q 014621 212 HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 212 ~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
.+|...+.+++..++.+.+..||++|.++.
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 160 DQYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 999999999999999999999999997543
No 334
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=1.8e-20 Score=219.49 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=146.4
Q ss_pred eeeeeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCc
Q 014621 37 VPIEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 37 ~~v~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ 107 (421)
....+++++.|+ ...+|+||||+|++|+ .+||+|+||||||||+++|.|+.+.+|.|.+||.++. |+.
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhc
Confidence 345789999995 3789999999999999 9999999999999999999999977899999999864 567
Q ss_pred cccccCCCCCCccchHHHHHHhhhcc--cc-------cccc--cccc--ccccccc--c-ccccccCceEEEeehhhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEG--KA-------VQVP--IYDF--KSSSRIG--Y-RTLEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~--~~-------i~~p--~~~~--~~~~~~~--~-~~~~~~~qrVlIaegl~~L~ 171 (421)
+++++|+|.+|+ .|+++||...... .. +... .... .....++ + .......||+.|||++
T Consensus 1294 is~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL---- 1368 (1490)
T TIGR01271 1294 FGVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI---- 1368 (1490)
T ss_pred eEEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH----
Confidence 999999999997 5999999643210 00 0000 0000 0001111 1 1112245999999999
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHHc--CCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~--G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-++.++++||||+++|..+.+.|.+.+.+. +.|+ .+.+.. ||+|++|.+|+|.+.+.+.++.
T Consensus 1369 -Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1369 -LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred -hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHH
Confidence 7899999999999999999988888777653 6777 455544 8999999999999999888875
No 335
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.81 E-value=4.6e-20 Score=200.21 Aligned_cols=179 Identities=10% Similarity=0.073 Sum_probs=134.2
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCC-C
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-R 116 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p-~ 116 (421)
-.+++++.|+...+++++||++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++ .. -.++|++|++ .
T Consensus 321 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~---~~i~y~~q~~~~ 393 (635)
T PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG-TK---LEVAYFDQHRAE 393 (635)
T ss_pred EEeeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-CC---cEEEEEeCcccc
Confidence 45789999988899999999999999 99999999999999999999999 899999984 22 2589999986 4
Q ss_pred CCccchHHHHHHhhhcccccc---cc------cccccc--ccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 117 LTDYDTLLENIRGLKEGKAVQ---VP------IYDFKS--SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~---~p------~~~~~~--~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+++..|+.+++.......... .. .+.+.. .............+|+.|++++ ..+|.++++||||
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al-----~~~p~lLlLDEPt 468 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF-----LKPSNLLILDEPT 468 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 777889999997642111000 00 000100 0000001111234899999999 8899999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEcc-CcEEeec
Q 014621 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMY-KAFIEPD 229 (421)
Q Consensus 186 s~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~-~g~I~p~ 229 (421)
++||+.....+.+-+.+.+.|+ .+.+..+||+++.+. +|.+...
T Consensus 469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 469 NDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 9999998777776666544466 778899999999997 7888653
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=2.2e-20 Score=217.76 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=132.0
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEEC-CeecC-------C
Q 014621 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYNDS-------S 105 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~D-g~~~~-------~ 105 (421)
-..++++|.|+. ..+|+++||++++|+ ++||+||||||||||+++|+|++ |++|.|.+| |.++. +
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 457889999974 469999999999999 99999999999999999999999 999999994 55442 4
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccc------------------------------------------c-------
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------------------------------------V------- 136 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~------------------------------------------i------- 136 (421)
+.+++++|+|.+|+ .|+.+||.+...... .
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 56999999999997 599999987431000 0
Q ss_pred ----cc---cc---------ccc----cc--cccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014621 137 ----QV---PI---------YDF----KS--SSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 137 ----~~---p~---------~~~----~~--~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
.. .. .++ .. ....+. .......||+.|||++ ..+|.++++||||++||+.
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl-----l~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI-----IRNPKILILDEATSSLDNK 613 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH-----hcCCCEEEEeCcccccCHH
Confidence 00 00 000 00 000010 1111234999999999 8999999999999999999
Q ss_pred HHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcE
Q 014621 192 LVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 192 ~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
....+. +++.+ +|+|+ .+.+ +.||++++|++|.
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 877665 44443 47776 5555 5899999999974
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=3.4e-20 Score=195.26 Aligned_cols=183 Identities=12% Similarity=-0.016 Sum_probs=128.4
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC--CeeEEEECCeecC--------CCcc
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp--~~G~I~~Dg~~~~--------~~~i 108 (421)
-.+++++.|+...+|+++||++++|+ ++||+||||||||||+++|+|+.| ++|.|.++|.... ++.+
T Consensus 262 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 262 VLNNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEeceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 35678888888889999999999999 999999999999999999999874 5899999996431 2458
Q ss_pred ccccCCCCCCcc--chHHHHHHhhhcc--c---cccc--ccccccccccccc----------ccccccCceEEEeehhhh
Q 014621 109 DGNFDDPRLTDY--DTLLENIRGLKEG--K---AVQV--PIYDFKSSSRIGY----------RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 109 g~vfq~p~l~~~--~tv~enl~~l~~~--~---~i~~--p~~~~~~~~~~~~----------~~~~~~~qrVlIaegl~~ 169 (421)
+|++|++.++.. .++.+++...... . .... ...........+. .......||+.|++++
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al-- 416 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL-- 416 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH--
Confidence 999998765432 3555554322100 0 0000 0000000001110 1111234999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCC-CH------HHHHHH-HhceEEEccCcEEeec
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQ-EP------EEIIHQ-ISETVYPMYKAFIEPD 229 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~-ti------~~vi~~-~~d~V~~m~~g~I~p~ 229 (421)
...|.++++||||+++|+...+.+. ++++++|. |+ ++.+.+ +||++++|++|++...
T Consensus 417 ---~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 417 ---VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred ---hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 8999999999999999999766554 66666654 45 566666 6999999999987543
No 338
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.81 E-value=1.7e-19 Score=169.22 Aligned_cols=176 Identities=36% Similarity=0.620 Sum_probs=149.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCCC------ccccccCCCCCCccchHHHHHHhhhccccc
Q 014621 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~~~------~ig~vfq~p~l~~~~tv~enl~~l~~~~~i 136 (421)
++.+|||+|+||||||||++.|.+.+ .....+.+|+++.... ...+.|++|..++...+.+.+..++.+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 35599999999999999999999998 4567889999865321 235678889889888888889888888888
Q ss_pred cccccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 014621 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (421)
Q Consensus 137 ~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~ 215 (421)
..|.|++..+.... +.....+..++|+||.+++. ..+++.+|+..+++++.+.+..|++.|+...+|.+..+++.+|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 88999988776544 33345567899999999987 57889999999999999999999999999889999999999999
Q ss_pred ceEEEccCcEEeecCCcccEEEeCCC
Q 014621 216 ETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 216 d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
.++.+++..++.|.+..||++|.++.
T Consensus 164 ~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 164 STVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HhhhhhHHhhccHhhcceeEEecCCC
Confidence 99999999999999999999997654
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.2e-20 Score=199.20 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=134.3
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCC--
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-- 115 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p-- 115 (421)
-.+++++.|++..+++++||.+.+|+ ++||+||||||||||+++|+|++ |++|.|.+++. ..++|++|++
T Consensus 314 ~~~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~~ 386 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQLE 386 (638)
T ss_pred EEEeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcchh
Confidence 46788999988899999999999999 99999999999999999999999 89999998742 3689999975
Q ss_pred CCCccchHHHHHHhhhccc---ccc--cccccccc--ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCc
Q 014621 116 RLTDYDTLLENIRGLKEGK---AVQ--VPIYDFKS--SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~---~i~--~p~~~~~~--~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~L 188 (421)
.+....++.+++....... .+. ...+.+.. .............||+.|++++ ...|.++++||||++|
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l-----~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV-----WQRPNLLLLDEPTNHL 461 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCC
Confidence 2344456766654321100 000 00011100 0000001111234899999999 8899999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEe-ecCCcccE
Q 014621 189 HFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE-PDLQTAHI 235 (421)
Q Consensus 189 D~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~-p~~~~aDi 235 (421)
|+.....+..-+.+-+.|+ .+.+.++||++++|.+|.+. -.+...+.
T Consensus 462 D~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 462 DLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9998887776666544466 78899999999999999986 34544443
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=4.4e-20 Score=178.17 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=115.9
Q ss_pred EEEeeeeeEEe-----cCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHH
Q 014621 51 IVIRACQLLAQ-----KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 51 ~~L~~Vsl~i~-----~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~ 124 (421)
..+.+++|.+. +|+ ++||+|+||||||||+++|+|++ |++|.|.++|. .++|++|++..+...|+.
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 8 KTLGEFTLEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred cccCcEEEEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHH
Confidence 34555555554 799 99999999999999999999999 99999999984 589999998877778999
Q ss_pred HHHHhhhccccc-ccc---cc-ccccccccc---cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH
Q 014621 125 ENIRGLKEGKAV-QVP---IY-DFKSSSRIG---YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV 196 (421)
Q Consensus 125 enl~~l~~~~~i-~~p---~~-~~~~~~~~~---~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI 196 (421)
+++......... ... .. .+....... ........||+.|++++ ..+|.+.++|||+++||+.....+
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL-----~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL-----SKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH-----hcCCCEEEEeCCcccCCHHHHHHH
Confidence 998653221100 000 00 000000000 01111234999999999 999999999999999999976654
Q ss_pred ---HHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 014621 197 ---FRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 197 ---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~g 224 (421)
++++.++ |.|+ .+.+..+||++++|+.+
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 4666543 7777 78888999999999654
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.80 E-value=9.3e-20 Score=197.21 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=140.7
Q ss_pred eCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC----CCccccccCCCCCC
Q 014621 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLT 118 (421)
Q Consensus 47 ~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~----~~~ig~vfq~p~l~ 118 (421)
.+.+.+|+++|+.+++|+ +++|+||||||||||+++|+|.. |+ .|+|.+||.... ++.++|++|++.++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cCccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 346789999999999999 99999999999999999999998 53 799999998754 35689999999999
Q ss_pred ccchHHHHHHhhhccc---cc---cc--c----c--ccc--cccccccc-----ccccccCceEEEeehhhhhhhccCCc
Q 014621 119 DYDTLLENIRGLKEGK---AV---QV--P----I--YDF--KSSSRIGY-----RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~---~i---~~--p----~--~~~--~~~~~~~~-----~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
+..|++||+.+...-+ .. +. . . ... ......+. .......+|+.|++++ ..+|.
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL-----~~~p~ 186 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL-----LTDPP 186 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH-----HcCCC
Confidence 9999999998643211 00 00 0 0 000 00112221 1122245999999999 89999
Q ss_pred cceEEEEecCccHHHHHHHH---HHHHHcCCCH-------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 178 IDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti-------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++++||||++||......++ ++++++|+|+ ...+.+++|++.+|.+|++...++..++.
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999877655 6666668887 24677899999999999999999888763
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=2.9e-20 Score=180.40 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=122.8
Q ss_pred eeeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------ECCeecCC-
Q 014621 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS- 105 (421)
Q Consensus 40 ~~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~-----------~Dg~~~~~- 105 (421)
.++++++|+.. .++++++ .+.+|+ +++|+|+||||||||+++|+|++ |++|.|. ++|.+...
T Consensus 3 ~~~~~~~y~~~~~~l~~i~-~i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 3 EDEPVHRYGPNSFKLHRLP-VPREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred ccCcceeecCcchhhhcCC-CCCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 45678888754 5999999 499999 99999999999999999999999 9999996 77775421
Q ss_pred --------CccccccCCCCCCccchHHHHHHhhhccccccc------cccccccc-cccccccccccCceEEEeehhhhh
Q 014621 106 --------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV------PIYDFKSS-SRIGYRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 106 --------~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~------p~~~~~~~-~~~~~~~~~~~~qrVlIaegl~~L 170 (421)
..+++++|++..++ .++.+++........... ........ ............||+.+++++
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral--- 154 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL--- 154 (255)
T ss_pred hHHhhhcccceeeecchhccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH---
Confidence 12567788887776 366666654321110000 00000000 000001111234899999999
Q ss_pred hhccCCccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEEEccC
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~~m~~ 223 (421)
..+|.+.++|||++++|+...+ .++++++++|.|+ .+.+.++||+++.++.
T Consensus 155 --~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 155 --ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred --HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 8899999999999999998755 4557776668887 7888899999999954
No 343
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.6e-19 Score=161.92 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=111.4
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Ccccccc
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig~vf 112 (421)
+++++.|....+++++++++++|+ +++|+|+||||||||+++|+|++ |..|.|.++|.+... +.++|++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 567788877789999999999999 99999999999999999999999 899999999976432 2345555
Q ss_pred CCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~ 192 (421)
| .+++ ..+|+.|++++ ...|.+.++|||++++|+..
T Consensus 80 q----------------------------------lS~G-----~~~r~~l~~~l-----~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 80 Q----------------------------------LSGG-----QRQRVALARAL-----LLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred e----------------------------------CCHH-----HHHHHHHHHHH-----hcCCCEEEEeCCCcCCCHHH
Confidence 5 2222 23788889999 88999999999999999987
Q ss_pred HHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 193 VKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 193 ~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
..++. +++...|.|+ .+.+..+||+++.+.+|
T Consensus 116 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 116 RERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCc
Confidence 66555 4444445666 78888899999999875
No 344
>PRK15453 phosphoribulokinase; Provisional
Probab=99.80 E-value=4.4e-19 Score=172.62 Aligned_cols=171 Identities=20% Similarity=0.339 Sum_probs=139.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeec-CCCc----------cccccCC--CCCCccchHHHHHH
Q 014621 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYND-SSRI----------IDGNFDD--PRLTDYDTLLENIR 128 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~-~~~~----------ig~vfq~--p~l~~~~tv~enl~ 128 (421)
+.+|||+|.|||||||+++.|...+. ....+..|+|+. .+.. -+..|+| |.+++...+.+.+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l~ 84 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFR 84 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHHH
Confidence 45999999999999999999987762 356788899875 2211 2458999 99999999999999
Q ss_pred hhhcccccccccccccc-----cccccccc---ccc-cCceEEEeehhhhhh----hccCCccceEEEEecCccHHHHHH
Q 014621 129 GLKEGKAVQVPIYDFKS-----SSRIGYRT---LEV-PSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKR 195 (421)
Q Consensus 129 ~l~~~~~i~~p~~~~~~-----~~~~~~~~---~~~-~~qrVlIaegl~~L~----d~l~p~ldL~DEpts~LD~~~~rr 195 (421)
.++.+...+.|.|++.. +.+..+.. ..+ ++..++|+||++.++ ..++..+|++++++++.|.+.+||
T Consensus 85 ~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~irR 164 (290)
T PRK15453 85 EYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQK 164 (290)
T ss_pred HHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHHH
Confidence 98887777777775321 22222221 123 468999999999875 257889999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEE
Q 014621 196 VFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 196 Ilrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
|.||.++||+|.++++.+|..+. +.|..+|.|+...+||.+
T Consensus 165 I~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInf 205 (290)
T PRK15453 165 IHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINF 205 (290)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEE
Confidence 99999999999999999999996 999999999999999975
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=99.80 E-value=1.5e-19 Score=194.22 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=126.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|+.+ .|+++|+++.+|+ ++||+|+||||||||+++|+|++ |++|.|.++ ..++|++|++.+.
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~~~ 412 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPD 412 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEecccccCC
Confidence 45677788765 4899999999999 99999999999999999999999 899999986 2589999999888
Q ss_pred ccchHHHHHHhhhccccccccccccccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEEEecCcc
Q 014621 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (421)
Q Consensus 119 ~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD 189 (421)
...|+.+++............. .......+ .+......|||.||+++ ...|.++++||||++||
T Consensus 413 ~~~tv~e~l~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL-----~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGSSYYK--SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACL-----SRDADLYLLDEPSAHLD 485 (590)
T ss_pred CCCcHHHHHHHHhhhcChHHHH--HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHH-----hcCCCEEEEeCCccCCC
Confidence 8889999997642111000000 00000111 01111234999999999 89999999999999999
Q ss_pred HHHHHHH---HHHHHHc-CCCH------HHHHHHHhceEEEccC
Q 014621 190 FDLVKRV---FRDIQRV-GQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 190 ~~~~rrI---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~ 223 (421)
+.....+ ++++.++ |.|+ ++.+..+||+++++++
T Consensus 486 ~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 9876554 5666554 7887 7788899999999965
No 346
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.79 E-value=4e-20 Score=185.36 Aligned_cols=160 Identities=21% Similarity=0.180 Sum_probs=119.7
Q ss_pred EEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-----CCccccccCCCCCCccchHHHHHHhhhcccccccc---cc
Q 014621 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP---IY 141 (421)
Q Consensus 71 IiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-----~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p---~~ 141 (421)
|+||||||||||+++|+|++ |++|.|.++|.+.. ++.++|+||++.+++.+|+.+|+.+.......... ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 58999999999999999999 89999999998753 35689999999999999999999875321100000 00
Q ss_pred ccccccccc---------cccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH-
Q 014621 142 DFKSSSRIG---------YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP- 207 (421)
Q Consensus 142 ~~~~~~~~~---------~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti- 207 (421)
-....+..+ .+......||+.|++++ ..+|.++++|||+++||+.....+. +++.++ |.|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL-----~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARAL-----VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 000001111 01111234999999999 9999999999999999999766554 555544 8887
Q ss_pred -----HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 208 -----EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 208 -----~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.+.+..+||++++|++|++...+...++
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 6778899999999999999887776666
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=1.1e-19 Score=171.97 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=126.0
Q ss_pred eCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHH
Q 014621 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (421)
Q Consensus 47 ~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~e 125 (421)
+..+.||+||||++.+|+ .+||+|+||||||||+|.|+|.+ |++|.|.++|.-.+--.++.-|| +..|.++
T Consensus 37 ~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-----pelTGre 108 (249)
T COG1134 37 VAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-----PELTGRE 108 (249)
T ss_pred cceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-----cccchHH
Confidence 456899999999999999 99999999999999999999999 99999999997433222333333 3467888
Q ss_pred HHHhhhc-----cccccc---cccccccccccccccc-ccc---CceEEEeehhhhhhhccCCccceEEEEecCccHHHH
Q 014621 126 NIRGLKE-----GKAVQV---PIYDFKSSSRIGYRTL-EVP---SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (421)
Q Consensus 126 nl~~l~~-----~~~i~~---p~~~~~~~~~~~~~~~-~~~---~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~ 193 (421)
|+.+... .+.++. ...+|......-.+.. .++ ..|++.+-+. ..+|.+++.||+-+.-|+...
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~-----~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT-----HVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhh-----hcCCCEEEEehhhhcCCHHHH
Confidence 8875321 111111 1122222111000111 111 1455555555 889999999999999999987
Q ss_pred HHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 194 KRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 194 rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++-. +++.+++.|+ ++.+.++||+++.+++|.+...++..+++
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 7655 4444567777 89999999999999999999888877764
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.7e-19 Score=193.16 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=122.6
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.||.+.++++|||++.+|+ ++||+|+||||||||+|+|+|++ |++|.|.++|.. .++|+.|++..+
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----~i~~~~q~~~~~ 76 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----QLAWVNQETPAL 76 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----EEEEEecCCCCC
Confidence 5788999999999999999999999 99999999999999999999998 999999998742 245555533221
Q ss_pred ccchHHHHHHh--------------------------hhc------ccccccccccccccccccc----------ccccc
Q 014621 119 DYDTLLENIRG--------------------------LKE------GKAVQVPIYDFKSSSRIGY----------RTLEV 156 (421)
Q Consensus 119 ~~~tv~enl~~--------------------------l~~------~~~i~~p~~~~~~~~~~~~----------~~~~~ 156 (421)
. .++.+.+.. +.. +........ ......+. .....
T Consensus 77 ~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 77 P-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA--SLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred C-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHH--HHHHhCCCCchhhcCchhhcCHH
Confidence 1 122221110 000 000000000 00011111 11112
Q ss_pred cCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 157 ~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
..+||.|++++ ...|.++++||||++||+....++.+-+.+.+.|+ .+.+.++||+++.+++|.+..
T Consensus 154 erqRv~LA~aL-----~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 154 WRMRLNLAQAL-----ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred HHHHHHHHHHH-----ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 24899999999 99999999999999999999888777666656666 788999999999999998853
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.78 E-value=1.8e-19 Score=196.30 Aligned_cols=170 Identities=13% Similarity=0.075 Sum_probs=128.4
Q ss_pred eeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC
Q 014621 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 39 v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
-.+++++.|+ +..+++++||++++|+ +++|+||||||||||+++|+|+. |+.|.|.+++ ++.+++++|+|.
T Consensus 453 ~~~nv~~~~~~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~~ 525 (659)
T TIGR00954 453 KFENIPLVTPNGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRPY 525 (659)
T ss_pred EEEeeEEECCCCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCCC
Confidence 4678888873 5679999999999999 99999999999999999999998 7899998875 457999999998
Q ss_pred CCccchHHHHHHhhhcc-----ccc-cccc------ccccc--cccc--------ccccccccCceEEEeehhhhhhhcc
Q 014621 117 LTDYDTLLENIRGLKEG-----KAV-QVPI------YDFKS--SSRI--------GYRTLEVPSSRIVIIEGIYALSEKL 174 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~-----~~i-~~p~------~~~~~--~~~~--------~~~~~~~~~qrVlIaegl~~L~d~l 174 (421)
+++. |+.+|+...... ... .... ..... .... +........||+.||+++ ..
T Consensus 526 l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal-----~~ 599 (659)
T TIGR00954 526 MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF-----YH 599 (659)
T ss_pred CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH-----Hc
Confidence 8876 999999864210 000 0000 00000 0000 011112234999999999 88
Q ss_pred CCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEcc
Q 014621 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMY 222 (421)
Q Consensus 175 ~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~ 222 (421)
+|.++++||||+++|+.....+.+-+.+.|.|+ .+.+ ++||++++++
T Consensus 600 ~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 600 KPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEe
Confidence 999999999999999999888887777778877 4444 6799999885
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=167.67 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=129.6
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---CCeeEEEECCeecC--------CCc
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS--------SRI 107 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~G~I~~Dg~~~~--------~~~ 107 (421)
.+++..+.++ +.+|++|||++++|| +.+|.||||||||||+..|+|.- ++.|.|.+||.++. +..
T Consensus 6 I~dLhv~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred EeeeEEEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 3566677666 499999999999999 99999999999999999999995 68999999999865 244
Q ss_pred cccccCCCCCCccchHHHHHHhhhcc---ccccccc-----------ccccc--ccc-cccccccccCceEEEeehhhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEG---KAVQVPI-----------YDFKS--SSR-IGYRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~---~~i~~p~-----------~~~~~--~~~-~~~~~~~~~~qrVlIaegl~~L 170 (421)
+..-||.|.-++..++.+.+...... .....+. ..+.. ..| +..-..-....|.=|+..+
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~--- 159 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL--- 159 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH---
Confidence 67789999999988888877643211 1000000 00000 001 0000001122444444445
Q ss_pred hhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHH-hceEEEccCcEEeecCCc
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQI-SETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~-~d~V~~m~~g~I~p~~~~ 232 (421)
.++|.+.++|||+|++|....+-+ ++.+++.|.++ ..++..+ .|+|.+|++|+|..+|..
T Consensus 160 --~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 160 --LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred --hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 889999999999999999876644 46666677666 4444444 399999999999877754
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.78 E-value=5e-19 Score=205.98 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=138.6
Q ss_pred eeeeEEEeC----cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC---CCcc
Q 014621 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS---SRII 108 (421)
Q Consensus 40 ~~~ls~~~g----~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~---~~~i 108 (421)
.+++++.++ .+.+|++||+.+++|+ ++||+||||||||||+++|+|+.+ ++|.|.+||.+.. ++.+
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 466777663 4689999999999999 999999999999999999999983 6799999998763 4568
Q ss_pred ccccCCCCCCccchHHHHHHhhhcc---ccccc-----c---c---cccc--ccccccc---ccccccCceEEEeehhhh
Q 014621 109 DGNFDDPRLTDYDTLLENIRGLKEG---KAVQV-----P---I---YDFK--SSSRIGY---RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 109 g~vfq~p~l~~~~tv~enl~~l~~~---~~i~~-----p---~---~~~~--~~~~~~~---~~~~~~~qrVlIaegl~~ 169 (421)
+|++|++.+++..|++|++.+...- ..... . . .... .....+. .......||+.|++++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL-- 916 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL-- 916 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH--
Confidence 9999998889999999999864211 00000 0 0 0000 0011110 1112245999999999
Q ss_pred hhhccCCc-cceEEEEecCccHHHHHHH---HHHHHHcCCCH-------HHHHHHHhceEEEccCc-EEeecCCcc
Q 014621 170 LSEKLRPL-IDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP-------EEIIHQISETVYPMYKA-FIEPDLQTA 233 (421)
Q Consensus 170 L~d~l~p~-ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti-------~~vi~~~~d~V~~m~~g-~I~p~~~~a 233 (421)
..+|. ++++||||++||......+ +++++++|+|+ ...+.+.+|++..+.+| ++...++..
T Consensus 917 ---~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 917 ---VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred ---HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 88996 9999999999999876655 46666678887 23345679999999997 998888754
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.78 E-value=4.4e-19 Score=194.30 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=125.7
Q ss_pred eeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC
Q 014621 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 39 v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
-.+++++.|+ ...+++++||++.+|+ ++||+||||||||||+++|+|++ |++|.|.+++ +..++|++|++.
T Consensus 510 ~~~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----~~~igyv~Q~~~ 582 (718)
T PLN03073 510 SFSDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----KVRMAVFSQHHV 582 (718)
T ss_pred EEEeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----ceeEEEEecccc
Confidence 3578889885 4579999999999999 99999999999999999999999 8999999875 246899999862
Q ss_pred CCccchHHHHHHh-h-hc--ccc---ccc--ccccccc--ccccccccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 117 LTDYDTLLENIRG-L-KE--GKA---VQV--PIYDFKS--SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 117 l~~~~tv~enl~~-l-~~--~~~---i~~--p~~~~~~--~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
+..++.++... . .. +.. +.. ..+.+.. .............||+.|++++ ...|.++++||||
T Consensus 583 --~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL-----~~~p~lLLLDEPT 655 (718)
T PLN03073 583 --DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-----FKKPHILLLDEPS 655 (718)
T ss_pred --ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH-----hcCCCEEEEcCCC
Confidence 22233333211 1 10 000 000 0001100 0000001111234899999999 8899999999999
Q ss_pred cCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEe
Q 014621 186 GGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 186 s~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~ 227 (421)
++||+.....+++.+.+.+.|+ .+.+..+||+++++.+|.+.
T Consensus 656 ~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 656 NHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999888888777643366 78889999999999999885
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=1.2e-18 Score=202.70 Aligned_cols=206 Identities=16% Similarity=0.137 Sum_probs=153.0
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC----CCccccccCCCCCCcc
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~ 120 (421)
.+.+|+|+|+.+++|+ +++|+||||||||||+++|+|.+ |+ +|.|.++|.+.. ++.++|++|+..+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4679999999999999 99999999999999999999999 77 899999998653 4568999999999999
Q ss_pred chHHHHHHhhhcccc----------c---cc-----cccc-------------------cccccccc----------cc-
Q 014621 121 DTLLENIRGLKEGKA----------V---QV-----PIYD-------------------FKSSSRIG----------YR- 152 (421)
Q Consensus 121 ~tv~enl~~l~~~~~----------i---~~-----p~~~-------------------~~~~~~~~----------~~- 152 (421)
+|+.|++.+...-.. . +. |..+ ....+..+ .+
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 999999987432100 0 00 0000 00000111 10
Q ss_pred ---cccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHH-cCCCH-------HHHHHHHhceE
Q 014621 153 ---TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP-------EEIIHQISETV 218 (421)
Q Consensus 153 ---~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~-~G~ti-------~~vi~~~~d~V 218 (421)
......|||.|++++ ..+|.++++||||++||......++ +++.+ .|.|+ ...+.+++|+|
T Consensus 334 ~rglSGGerkRVsia~aL-----~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMI-----VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred ccCCCcccceeeeehhhh-----cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 112235999999999 9999999999999999999877655 66654 47776 34677899999
Q ss_pred EEccCcEEeecCCcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHHHhcc
Q 014621 219 YPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSK 271 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~~ 271 (421)
++|++|++...++..+++- -|.- -|+.-| ...-+.||+.++.+.
T Consensus 409 ilL~~G~ivy~G~~~~~~~--yF~~-lGf~cP------~~~n~ADFl~~v~s~ 452 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDHILE--FFES-CGFKCP------ERKGTADFLQEVTSK 452 (1470)
T ss_pred EEeeCceEEEeCCHHHHHH--HHHH-cCCCCC------CCCChHHHHHHhcCc
Confidence 9999999999988777741 1111 245556 666778888877664
No 354
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-19 Score=182.65 Aligned_cols=190 Identities=19% Similarity=0.202 Sum_probs=148.0
Q ss_pred eeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCc
Q 014621 37 VPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (421)
Q Consensus 37 ~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ 107 (421)
+...++++|.|. .++.|+++|+.++.|+ .++|+|+||+||||+++.|-..+ +++|.|.+||+++. ++.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 457788999995 6899999999999999 99999999999999999999999 99999999999864 567
Q ss_pred cccccCCCCCCccchHHHHHHhhhcccc----------cc-------cc-ccccccccccccccccccCceEEEeehhhh
Q 014621 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA----------VQ-------VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 108 ig~vfq~p~l~~~~tv~enl~~l~~~~~----------i~-------~p-~~~~~~~~~~~~~~~~~~~qrVlIaegl~~ 169 (421)
||+++|+.-+|+ .|...|+.+.+.... .+ .| -|+..-+++ |.+....++|||.|+|.+
T Consensus 339 Ig~VPQDtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vger-glklSggekqrvaiar~i-- 414 (497)
T COG5265 339 IGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER-GLKLSGGEKQRVAIARTI-- 414 (497)
T ss_pred hCcCcccceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchh-eeeccCchHHHHHHHHHH--
Confidence 999999988875 688888887543210 00 01 011111111 112233456999999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCHHHHHHH-----HhceEEEccCcEEeecCCcccEE
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQ-----ISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti~~vi~~-----~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.-+|.++++||.|++||.++.+.|++.+++ +|+|-.-++++ =+|.++++.+|+|.+.|.+.+++
T Consensus 415 ---lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 415 ---LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred ---hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHH
Confidence 889999999999999999999998866654 57765222222 26899999999999999998876
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=1.6e-18 Score=188.10 Aligned_cols=175 Identities=12% Similarity=0.083 Sum_probs=119.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCC
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~ 118 (421)
.+++++.|+...++++|||++++|+ ++||+||||||||||+++|+|++ |++|.|.+++.. .+++..|++...
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~----~~~~l~q~~~~~ 78 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL----IVARLQQDPPRN 78 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----EEEEeccCCCCC
Confidence 4677788888889999999999999 99999999999999999999998 999999998631 123333332111
Q ss_pred ccchHHH------------------------------HHHhhhc---------ccccccccccccccccccc-------c
Q 014621 119 DYDTLLE------------------------------NIRGLKE---------GKAVQVPIYDFKSSSRIGY-------R 152 (421)
Q Consensus 119 ~~~tv~e------------------------------nl~~l~~---------~~~i~~p~~~~~~~~~~~~-------~ 152 (421)
...++.+ ++..... +........ ......+. .
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~lgl~~~~~~~~ 156 (635)
T PRK11147 79 VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN--EVLAQLGLDPDAALSS 156 (635)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH--HHHHhCCCCCCCchhh
Confidence 1111211 1111000 000000000 00000110 1
Q ss_pred cccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 153 ~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
......+||.|++++ ...|.++++||||++||+....++..-+.+-+.|+ ...+.++||+++.+++|.+
T Consensus 157 LSgGekqRv~LAraL-----~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 157 LSGGWLRKAALGRAL-----VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred cCHHHHHHHHHHHHH-----hcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 111234899999999 89999999999999999999888776666544566 7888999999999999998
Q ss_pred ee
Q 014621 227 EP 228 (421)
Q Consensus 227 ~p 228 (421)
..
T Consensus 232 ~~ 233 (635)
T PRK11147 232 VS 233 (635)
T ss_pred EE
Confidence 64
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=9.6e-19 Score=205.46 Aligned_cols=183 Identities=16% Similarity=0.111 Sum_probs=139.5
Q ss_pred eeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCC
Q 014621 38 PIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (421)
Q Consensus 38 ~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~ 114 (421)
-..++++|.|+. ..+|+++||++++|+ +++|+|+||||||||+++|+|++ |.+|.|.++| .++|++|+
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~ 707 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQ 707 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCC
Confidence 346788888863 579999999999999 99999999999999999999999 8999999987 58999999
Q ss_pred CCCCccchHHHHHHhhhcccc--cccc------cccccc---c--ccccc---ccccccCceEEEeehhhhhhhccCCcc
Q 014621 115 PRLTDYDTLLENIRGLKEGKA--VQVP------IYDFKS---S--SRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 115 p~l~~~~tv~enl~~l~~~~~--i~~p------~~~~~~---~--~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~l 178 (421)
|.+++ .|+++|+.+...... .+.- ..+... + ...+. .......||+.|||++ ..+|.+
T Consensus 708 ~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl-----~~~~~i 781 (1522)
T TIGR00957 708 AWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV-----YSNADI 781 (1522)
T ss_pred ccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH-----hcCCCE
Confidence 98775 799999987532110 0000 000000 0 01111 1112235999999999 789999
Q ss_pred ceEEEEecCccHHHHHHHHHHHH-----HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 179 DLRVSVTGGVHFDLVKRVFRDIQ-----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIlrdl~-----~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.++|||++++|+...+.+.+.+. .+|+|+ .+.+.. ||++++|.+|++...+.+.++.
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999888876653 246676 555554 9999999999999988877764
No 357
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.9e-18 Score=155.33 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=130.4
Q ss_pred eeeeecCcceecCeeeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 24 QLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 24 ~l~~~~~~~~y~~~~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
.|.+.+.+|.|.++ ...| ..++++++||+++.|| ++.+-||||||||||+|+|.+.. |++|.|.+...
T Consensus 4 ~l~v~~~~KtFtlH-------~q~Gi~LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~ 73 (235)
T COG4778 4 PLNVSNVSKTFTLH-------QQGGVRLPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE 73 (235)
T ss_pred eeeeecchhheEee-------ecCCEEeeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC
Confidence 45666666666331 1112 2578999999999999 99999999999999999999999 99999988644
Q ss_pred ec---------------CCCccccccCCCCCCccchHHHHHHhhhcccc------------------ccccccccccccc
Q 014621 102 ND---------------SSRIIDGNFDDPRLTDYDTLLENIRGLKEGKA------------------VQVPIYDFKSSSR 148 (421)
Q Consensus 102 ~~---------------~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~------------------i~~p~~~~~~~~~ 148 (421)
.. .++.+||+.|.....+.....+.++.+..... +..+.+...+...
T Consensus 74 g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTF 153 (235)
T COG4778 74 GEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATF 153 (235)
T ss_pred cchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCccc
Confidence 21 13568999998777777777777765432111 1111223333333
Q ss_pred cccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHH---HHHHHHHHcCCCH------HHHHHHHhceEE
Q 014621 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK---RVFRDIQRVGQEP------EEIIHQISETVY 219 (421)
Q Consensus 149 ~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~r---rIlrdl~~~G~ti------~~vi~~~~d~V~ 219 (421)
+| .+.|||-|++|+ ..+-.++++||||++||..... .++++.+.+|..+ +++-+..|||..
T Consensus 154 SG-----GEqQRVNIaRgf-----ivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 154 SG-----GEQQRVNIARGF-----IVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred CC-----chheehhhhhhh-----hccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhee
Confidence 33 245999999999 8888899999999999987654 4557777788887 778888999987
Q ss_pred Ecc
Q 014621 220 PMY 222 (421)
Q Consensus 220 ~m~ 222 (421)
.|.
T Consensus 224 ~~~ 226 (235)
T COG4778 224 DVS 226 (235)
T ss_pred ecc
Confidence 764
No 358
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.75 E-value=7.1e-18 Score=156.86 Aligned_cols=174 Identities=36% Similarity=0.648 Sum_probs=144.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCC------CccccccCCCCCCccchHHHHHHhhhcccccccc
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~~------~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p 139 (421)
++||+|+||||||||+++|.+++ .....+.+|+++... ......+++|..++...+.+.+..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999997 457889999886431 1234567788888877777888777777778889
Q ss_pred ccccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceE
Q 014621 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (421)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V 218 (421)
.+++..+.+..... ...+..++|++|.+++. +...+.+|+..+++++.|.+..|++.|+..++|.+..+....|..+.
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99888776654222 45668899999999987 46778899999999999998889999999899999988889999999
Q ss_pred EEccCcEEeecCCcccEEEeCCCC
Q 014621 219 YPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
.+.+..++.+....||++|.++.+
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCC
Confidence 999999999999999999975443
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.75 E-value=3.2e-18 Score=168.51 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=134.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcC---CCe---eEEEECCeecCCC---cccc--ccCCCCCCccchHHHHHHhhh
Q 014621 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---PSI---AVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLK 131 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gll---p~~---G~I~~Dg~~~~~~---~ig~--vfq~p~l~~~~tv~enl~~l~ 131 (421)
...|++|||+|+||||||||+++|.+++ |.. ..+.+||++.... ..++ .+..|..++...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 3458899999999999999999999987 333 3467899876532 2332 244566777777777777777
Q ss_pred cccc-ccccccccccccccccccccccCceEEEeehhhhhhh-c----------cCCccceEEEEecCccHHHHHHHHHH
Q 014621 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-K----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (421)
Q Consensus 132 ~~~~-i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~----------l~p~ldL~DEpts~LD~~~~rrIlrd 199 (421)
.+.. +..|.|++..+++...+.....+.+|+|+||+++|++ . ++..+|++++++++.|....|.+.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 7764 8999999999888765555567899999999999973 3 35899999999999988876666543
Q ss_pred --HHHcC-------------CCH----HHHHHHHhceEEEccCcEEeecCCcccEEEeCCC
Q 014621 200 --IQRVG-------------QEP----EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 200 --l~~~G-------------~ti----~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
+.+++ .+- ....+.|.....++...+|.|++..||+|++.+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 33322 222 2334456888899999999999999999997544
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=2.1e-18 Score=200.88 Aligned_cols=177 Identities=16% Similarity=0.110 Sum_probs=132.4
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC----CCccccccCCCCCCcc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--~~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~ 120 (421)
+.+.+|++||+.+++|+ +++|+||||||||||+++|+|.. + ..|.|.++|.+.. ++.++|++|++.+++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 44689999999999999 99999999999999999999997 3 5799999998653 3468999999999999
Q ss_pred chHHHHHHhhhcc---cccccc--------c---ccccc--cccccc----ccccccCceEEEeehhhhhhhccCCccce
Q 014621 121 DTLLENIRGLKEG---KAVQVP--------I---YDFKS--SSRIGY----RTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 121 ~tv~enl~~l~~~---~~i~~p--------~---~~~~~--~~~~~~----~~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
.|++|++.+.... ...... . ..... ....+. .......||+.|++++ ..+|.+++
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL-----~~~P~lL~ 1042 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL-----VANPSIIF 1042 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH-----hhCCCEEE
Confidence 9999999864211 000000 0 00000 011110 0111234899999999 99999999
Q ss_pred EEEEecCccHHHHHHH---HHHHHHcCCCH------HH-HHHHHhceEEEccC-cEEeecCCc
Q 014621 181 RVSVTGGVHFDLVKRV---FRDIQRVGQEP------EE-IIHQISETVYPMYK-AFIEPDLQT 232 (421)
Q Consensus 181 ~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~-vi~~~~d~V~~m~~-g~I~p~~~~ 232 (421)
+||||++||......+ ++++.++|+|+ .+ .+.+.+|+++.|++ |++...++.
T Consensus 1043 LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 9999999999976655 46676778887 22 45678999999996 898877764
No 361
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.3e-18 Score=161.61 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=125.0
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCC-------ccccccCCCC--CC
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR-------IIDGNFDDPR--LT 118 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~-------~ig~vfq~p~--l~ 118 (421)
++.+|+++||+|.+|+ ++.|+|.||||||||++.|+|-+ |++|.|.+||.++++. .++-+||+|. ..
T Consensus 18 ek~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 18 EKRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred HHHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 4789999999999999 99999999999999999999999 9999999999987642 3567999994 68
Q ss_pred ccchHHHHHHhhhc-cccc------cc-ccccc-cccccccc--------ccccc---cCceEEEeehhhhhhhccCCcc
Q 014621 119 DYDTLLENIRGLKE-GKAV------QV-PIYDF-KSSSRIGY--------RTLEV---PSSRIVIIEGIYALSEKLRPLI 178 (421)
Q Consensus 119 ~~~tv~enl~~l~~-~~~i------~~-p~~~~-~~~~~~~~--------~~~~~---~~qrVlIaegl~~L~d~l~p~l 178 (421)
+.+|+.||+..... ++.. .. ....+ ......+. +...+ ..|.+.++-+. ...|.+
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt-----l~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT-----LHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh-----cCCCcE
Confidence 89999999987532 1110 00 00000 00011110 00001 12444444444 778999
Q ss_pred ceEEEEecCccHHHHHHHH---HHHHH-cCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 179 DLRVSVTGGVHFDLVKRVF---RDIQR-VGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl---rdl~~-~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
+++||-|++|||++...++ +++.+ .+.|. |+-+-.|-+|.++|++|+|+-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999999887776 44444 46555 788889999999999999854
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=155.00 Aligned_cols=189 Identities=18% Similarity=0.201 Sum_probs=129.0
Q ss_pred eeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----------------
Q 014621 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------- 104 (421)
Q Consensus 42 ~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------------- 104 (421)
+++..||.....++|||.+.+|| +.||+|.||||||||++||.+-+ |+.|.|.++...-.
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~ 87 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLL 87 (258)
T ss_pred hhhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHh
Confidence 34555677778889999999999 99999999999999999999999 99999988653211
Q ss_pred CCccccccCCCCC--CccchHHHHH----Hhhhcc-------------cccccc--ccccccccccccccccccCceEEE
Q 014621 105 SRIIDGNFDDPRL--TDYDTLLENI----RGLKEG-------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVI 163 (421)
Q Consensus 105 ~~~ig~vfq~p~l--~~~~tv~enl----~~l~~~-------------~~i~~p--~~~~~~~~~~~~~~~~~~~qrVlI 163 (421)
+-.-|++-|+|.- -...+.-.|| ...-.. +.++++ ..|-.+...++ ...||+-|
T Consensus 88 RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSG-----GMqQRLQi 162 (258)
T COG4107 88 RTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSG-----GMQQRLQI 162 (258)
T ss_pred hhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccch-----HHHHHHHH
Confidence 1235788888842 1111111222 111000 011111 11111111122 12378888
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
|+-+ ..+|.+.+.||||.++|+....|++ |.+..+ |.++ ..++.-.++|..+|.+|.+.+.+-+.
T Consensus 163 ARnL-----Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 163 ARNL-----VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHh-----ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 8888 9999999999999999999877765 666654 7665 78889999999999999999998664
Q ss_pred cEEEeCCCCCc
Q 014621 234 HIKIINKFNPF 244 (421)
Q Consensus 234 DiiI~~~~~p~ 244 (421)
.+ ....-+||
T Consensus 238 rv-LDDP~hPY 247 (258)
T COG4107 238 RV-LDDPHHPY 247 (258)
T ss_pred cc-ccCCCCch
Confidence 44 34444444
No 363
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.75 E-value=5.8e-18 Score=165.81 Aligned_cols=168 Identities=29% Similarity=0.538 Sum_probs=139.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecC----CCccccccCCCCCCccchHHHHHHhhhcccccccccc
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~~G-~I~~Dg~~~~----~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~ 141 (421)
++||+|+||||||||+++|++++ +..+ .+.+|+++.. +...|+.+++|...+...+.+++..++.+..+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999999 5444 6778877532 1245777888877666667888888888888899999
Q ss_pred ccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEE
Q 014621 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (421)
Q Consensus 142 ~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~ 220 (421)
++....... .....+.+++|+||++++++ .+++.+|+.++++++.+.+..|++.|++.++|.+.+++.+++.. ..+
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hch
Confidence 988765332 12345678999999998874 88899999999999999999999999999999999999988865 488
Q ss_pred ccCcEEeecCCcccEEEe
Q 014621 221 MYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 221 m~~g~I~p~~~~aDiiI~ 238 (421)
.+..+|.|.+..||++|.
T Consensus 158 ~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred hHHHHhccccccCcEEEE
Confidence 999999999999999984
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.75 E-value=1.3e-18 Score=202.51 Aligned_cols=205 Identities=18% Similarity=0.180 Sum_probs=148.2
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-----CCeeEEEECCeecC------CCccccccCCCCC
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYNDS------SRIIDGNFDDPRL 117 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-----p~~G~I~~Dg~~~~------~~~ig~vfq~p~l 117 (421)
.+.+|++||+.+++|+ +++|+||||||||||+|+|+|+. |.+|.|.++|.+.. ++.++|++|+..+
T Consensus 73 ~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 4679999999999999 99999999999999999999985 57999999998642 3458999999999
Q ss_pred CccchHHHHHHhhhccc-------cccc-----cc-------ccccc--cccccc----ccccccCceEEEeehhhhhhh
Q 014621 118 TDYDTLLENIRGLKEGK-------AVQV-----PI-------YDFKS--SSRIGY----RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~~-------~i~~-----p~-------~~~~~--~~~~~~----~~~~~~~qrVlIaegl~~L~d 172 (421)
++..|+.|++.+...-+ .... .. ..... ....+. .......|||.|++++
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL----- 224 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS----- 224 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH-----
Confidence 99999999998742210 0000 00 00000 011110 1112245999999999
Q ss_pred ccCCccceEEEEecCccHHHHHHHH---HHHHHc-CCCH-------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCC
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRV-GQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~-G~ti-------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
..+|.++++||||++||......++ +++.++ |.|+ .+.+.+++|+++++++|++...++..+++- =|
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~--yF 302 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ--YF 302 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH--HH
Confidence 8899999999999999999776554 666654 8776 356788999999999999998888776631 11
Q ss_pred CCcccccCCeeeccCCCcchHHHHHHHhc
Q 014621 242 NPFTGFQNPTYILKSTRPVTVDEIKAVMS 270 (421)
Q Consensus 242 ~p~~~~~~p~~v~k~~~~~~~~~i~~~l~ 270 (421)
.- -|+..| ....+.|++.++.+
T Consensus 303 ~~-lG~~~p------~~~n~aDfl~~~~~ 324 (1394)
T TIGR00956 303 EK-MGFKCP------DRQTTADFLTSLTS 324 (1394)
T ss_pred HH-cCCCCC------CCCChHHHHHhccC
Confidence 10 134444 45555667666554
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=2.3e-18 Score=202.62 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=138.7
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe-eEEEECCeecCCCcccccc
Q 014621 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYNDSSRIIDGNF 112 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~-G~I~~Dg~~~~~~~ig~vf 112 (421)
...++++|.|+. ..+|+|+||++++|+ .++|+||||||||||+++|.|.+ |.+ |.|.+ +..++|++
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------~~~Iayv~ 685 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------RGTVAYVP 685 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------cCeEEEEc
Confidence 456788998853 579999999999999 99999999999999999999999 888 89985 34799999
Q ss_pred CCCCCCccchHHHHHHhhhcccc--ccc---------ccccccc--ccccccc---cccccCceEEEeehhhhhhhccCC
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKA--VQV---------PIYDFKS--SSRIGYR---TLEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~--i~~---------p~~~~~~--~~~~~~~---~~~~~~qrVlIaegl~~L~d~l~p 176 (421)
|+|.+++ .|+++||.+...... ... -...+.. ...+|.. .....+||+.||||+ .-++
T Consensus 686 Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl-----y~~~ 759 (1622)
T PLN03130 686 QVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV-----YSNS 759 (1622)
T ss_pred CccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH-----hCCC
Confidence 9999987 699999997543110 000 0000100 1112211 112245999999999 6789
Q ss_pred ccceEEEEecCccHHHHHHHHHHH-HH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 177 LIDLRVSVTGGVHFDLVKRVFRDI-QR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIlrdl-~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+.++|||++++|+...+++.+.. .. +|+|+ .+.+ ..+|+|++|++|++.+.|.+.++.
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999888776543 21 47776 4544 458999999999999999888774
No 366
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.3e-18 Score=187.13 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=120.9
Q ss_pred eeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEE-----------ECCeecC--
Q 014621 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDS-- 104 (421)
Q Consensus 40 ~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~-----------~Dg~~~~-- 104 (421)
.+.++..||. ..+|++++ .+++|+ ++||+||||||||||+++|+|++ |+.|.|. ++|.++.
T Consensus 76 ~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 76 EEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred ccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 3457788986 46999999 899999 99999999999999999999999 9999997 8886542
Q ss_pred -------CCccccccC----CCCCCccchHHHHHHhhhcccccccc--cccccc-ccccccccccccCceEEEeehhhhh
Q 014621 105 -------SRIIDGNFD----DPRLTDYDTLLENIRGLKEGKAVQVP--IYDFKS-SSRIGYRTLEVPSSRIVIIEGIYAL 170 (421)
Q Consensus 105 -------~~~ig~vfq----~p~l~~~~tv~enl~~l~~~~~i~~p--~~~~~~-~~~~~~~~~~~~~qrVlIaegl~~L 170 (421)
...+++.+| .|.++. .++.+++........+..- ...... ..+.-.+......||+.|++++
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al--- 227 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL--- 227 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH---
Confidence 122344444 444433 3788887642111110000 001100 0000001112234899999999
Q ss_pred hhccCCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCc
Q 014621 171 SEKLRPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 171 ~d~l~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
..+|.++++||||++||+....++ ++++.+ |.|+ ++.+.++||++.+++++
T Consensus 228 --~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 228 --LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred --hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 899999999999999999976654 466656 8887 78889999999999763
No 367
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=3.1e-18 Score=200.90 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=137.0
Q ss_pred eeeeeeEEEeCc---EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccC
Q 014621 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (421)
Q Consensus 38 ~v~~~ls~~~g~---~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq 113 (421)
...++++|.|+. ..+|+|+||++++|+ .++|+|+||||||||+++|.|.+ |.+|.+. ..+..++|++|
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q 686 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQ 686 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcC
Confidence 346788999853 579999999999999 99999999999999999999999 7776542 12457999999
Q ss_pred CCCCCccchHHHHHHhhhcccc--c----ccc-----cccccc--ccccccc---cccccCceEEEeehhhhhhhccCCc
Q 014621 114 DPRLTDYDTLLENIRGLKEGKA--V----QVP-----IYDFKS--SSRIGYR---TLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~--i----~~p-----~~~~~~--~~~~~~~---~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
+|.+++ .|+++||.+...... . +.- ...+.. ...+|.. .....+||+.||||+ .-+|.
T Consensus 687 ~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl-----y~~~~ 760 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV-----YSNSD 760 (1495)
T ss_pred cccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH-----hcCCC
Confidence 999986 699999987542110 0 000 000000 0111211 112245999999999 67899
Q ss_pred cceEEEEecCccHHHHHHHHHHH-HH--cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 178 IDLRVSVTGGVHFDLVKRVFRDI-QR--VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 178 ldL~DEpts~LD~~~~rrIlrdl-~~--~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+.++|||++++|..+.+.+.+.+ .. +|+|+ .+.+ ..+|++++|.+|++.+.+.+.++.
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999988877553 22 46776 4444 469999999999999999888774
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=5.7e-18 Score=155.61 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=102.5
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeec--CCCccccccCCCCCCccchHHHH
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND--SSRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~--~~~~ig~vfq~p~l~~~~tv~en 126 (421)
.+.+++++||++++|+ +++|+||||||||||++++. +++|.+.+++... .++.+.+++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 4679999999999999 99999999999999999985 4688998887622 1223556655 122
Q ss_pred HHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccC--CccceEEEEecCccHHHHHHHH---HHHH
Q 014621 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDLVKRVF---RDIQ 201 (421)
Q Consensus 127 l~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~--p~ldL~DEpts~LD~~~~rrIl---rdl~ 201 (421)
+....-... ..+......++ ...||+.+++++ ..+ |.++++|||++++|+...+.+. +++.
T Consensus 71 l~~~~L~~~----~~~~~~~~LSg-----Gq~qrl~laral-----~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 71 LIDVGLGYL----TLGQKLSTLSG-----GELQRVKLASEL-----FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred HHHcCCCcc----ccCCCcCcCCH-----HHHHHHHHHHHH-----hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 221110000 00111111222 234889999999 888 9999999999999999776554 5555
Q ss_pred HcCCCH------HHHHHHHhceEEEccCcEE
Q 014621 202 RVGQEP------EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 202 ~~G~ti------~~vi~~~~d~V~~m~~g~I 226 (421)
++|.|+ .+.+ +.||+++.|.+|..
T Consensus 137 ~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 137 DLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred hCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 568887 5555 57999999977644
No 369
>PRK07429 phosphoribulokinase; Provisional
Probab=99.73 E-value=2.4e-17 Score=165.09 Aligned_cols=173 Identities=27% Similarity=0.496 Sum_probs=143.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCeecC----CCccccccCCCCCCccchHHHHHHhhhcccccc
Q 014621 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-p~-~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~ 137 (421)
+++++|||+|+||||||||++.|++++ +. ...+.+|+++.. ++..++.+.+|...+...+.+++..++.+..+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~ 85 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL 85 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence 468899999999999999999999998 44 467899998532 233566677787777777888888888888888
Q ss_pred ccccccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhc
Q 014621 138 VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (421)
Q Consensus 138 ~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d 216 (421)
.|.|++....... .....+.+++|+||++++++ ..++.+|++++++++.+.+..|++.|+..++|.+..++...+..
T Consensus 86 ~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~ 163 (327)
T PRK07429 86 KPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA 163 (327)
T ss_pred cceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999988765432 23455678999999998774 66889999999999999999999999999999999888887765
Q ss_pred eEEEccCcEEeecCCcccEEEeC
Q 014621 217 TVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 217 ~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
..+.+..+|.|.+..||++|.+
T Consensus 164 -r~pd~~~yI~P~k~~ADiVI~~ 185 (327)
T PRK07429 164 -REPDFEAYIRPQRQWADVVIQF 185 (327)
T ss_pred -hCccHhhhhcccccCCCEEEEc
Confidence 4888999999999999999853
No 370
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.72 E-value=5.5e-18 Score=198.63 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=130.6
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHH
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
..+|+|+||++++|+ +++|+||||||||||+++|+|++ |++|.|.++| .++|++|+|.+++ .|+++||.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCC-ccHHHHHH
Confidence 568999999999999 99999999999999999999999 8999999998 4899999999987 49999998
Q ss_pred hhhcccc--ccccc------ccc---cccc--cccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH
Q 014621 129 GLKEGKA--VQVPI------YDF---KSSS--RIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (421)
Q Consensus 129 ~l~~~~~--i~~p~------~~~---~~~~--~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~ 192 (421)
+...... ...-. .+. ..+. ..+. .......||+.||||+ ..+|.+.++|||++++|+..
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-----~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-----YKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-----HcCCCEEEEeCCcccCCHHH
Confidence 7532110 00000 000 0000 0111 1112235999999999 78999999999999999999
Q ss_pred HHHHHHHH-H--HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 193 VKRVFRDI-Q--RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 193 ~rrIlrdl-~--~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+.+.+.+ . .+|+|+ ++.+. .||+++.|.+|.+...+...++.
T Consensus 584 ~~~i~~~~l~~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 584 EKEIFESCLCKLMSNKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 88877542 2 247776 55555 49999999999999888877764
No 371
>PRK05439 pantothenate kinase; Provisional
Probab=99.72 E-value=3e-17 Score=162.87 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=139.7
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-----CeeEEEECCeecCCCcc---cc--ccCCCCCCccchHHHHHHhh
Q 014621 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSRII---DG--NFDDPRLTDYDTLLENIRGL 130 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-----~~G~I~~Dg~~~~~~~i---g~--vfq~p~l~~~~tv~enl~~l 130 (421)
...+|++|||.|++||||||+++.|..++ . .++.|.+|||+...... +. .+..|..+|...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 34568999999999999999999999876 2 47899999998653221 21 35678899999999999999
Q ss_pred hcccc-ccccccccccccccccccccccCceEEEeehhhhhh-hcc------CCccceEEEEecCccHHHHHHHHHHHH-
Q 014621 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQ- 201 (421)
Q Consensus 131 ~~~~~-i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l------~p~ldL~DEpts~LD~~~~rrIlrdl~- 201 (421)
+.+.. +..|.|++........+...+.+.+|+|+||+++|+ +.. ++.+|++++++++.|....|.+.|.+.
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 88876 899999999988775555667788999999999986 454 889999999999988766555544443
Q ss_pred ----H----------cCCCHH----HHHHHHhceEEEccCcEEeecCCcccEEEeCCC
Q 014621 202 ----R----------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (421)
Q Consensus 202 ----~----------~G~ti~----~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~ 241 (421)
. .|.+.. .+...|...+.++.+.+|.|++..||+||+.+.
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 1 244443 233355567889999999999999999997543
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=175.30 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=135.1
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
..+++++.||.+.+++++|+++.+|+ .+||+|+||||||||+|+|+|.+ |+.|.|..++- ..++|..|++.+
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l~Q~~~~ 77 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYLSQEPPL 77 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEeCCCCCc
Confidence 45788999999999999999999999 99999999999999999999999 99999997642 368999999999
Q ss_pred CccchHHHHHHhhhcc--------cccc--c------------------ccc------------------cccccccccc
Q 014621 118 TDYDTLLENIRGLKEG--------KAVQ--V------------------PIY------------------DFKSSSRIGY 151 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~--------~~i~--~------------------p~~------------------~~~~~~~~~~ 151 (421)
.+..|+.+.+...... .... . ..+ +......+|+
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 9888888776542100 0000 0 000 0001111111
Q ss_pred ccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHc-CCCH------HHHHHHHhceEEEccCc
Q 014621 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 152 ~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~-G~ti------~~vi~~~~d~V~~m~~g 224 (421)
...||.+|+++ .-.|.++++||||..||...+.++-.-+++. | |+ ..++..+|++++-++.|
T Consensus 158 -----~r~Rv~LA~aL-----~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 158 -----WRRRVALARAL-----LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred -----HHHHHHHHHHH-----hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 23688899999 8899999999999999999999988888654 7 66 89999999999999999
Q ss_pred EEeec
Q 014621 225 FIEPD 229 (421)
Q Consensus 225 ~I~p~ 229 (421)
.+...
T Consensus 227 ~l~~y 231 (530)
T COG0488 227 KLTPY 231 (530)
T ss_pred ceeEe
Confidence 76543
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=1.5e-17 Score=182.21 Aligned_cols=183 Identities=12% Similarity=0.075 Sum_probs=121.0
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc----CCCeeEEEECCeecC---------
Q 014621 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYNDS--------- 104 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----lp~~G~I~~Dg~~~~--------- 104 (421)
.-.+++++.||...+|+++||++.+|+ .+||+|+||||||||+++|+|. +|+.|.|.+.+++..
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 456789999988889999999999999 9999999999999999999985 367788865443210
Q ss_pred ------------CCccccccCCCCCCc----------------cchHHHHHHhhhc------cccccccc------cccc
Q 014621 105 ------------SRIIDGNFDDPRLTD----------------YDTLLENIRGLKE------GKAVQVPI------YDFK 144 (421)
Q Consensus 105 ------------~~~ig~vfq~p~l~~----------------~~tv~enl~~l~~------~~~i~~p~------~~~~ 144 (421)
++.+++++|++.+.. ...+.+.+..+.. +...+... ..+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 011344555432211 0011111111000 00000000 0000
Q ss_pred c--ccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH------HHHHHHHhc
Q 014621 145 S--SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP------EEIIHQISE 216 (421)
Q Consensus 145 ~--~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d 216 (421)
. ..+.-........+|+.|++++ ...|.++++||||++||+....++..-+.+.|.|+ .+.+..+||
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL-----~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARAL-----FIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHH-----hcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 0 0000001111234899999999 99999999999999999999888887777667776 788999999
Q ss_pred eEEEccCcEEee
Q 014621 217 TVYPMYKAFIEP 228 (421)
Q Consensus 217 ~V~~m~~g~I~p 228 (421)
+++.+++|++..
T Consensus 410 ~i~~l~~g~i~~ 421 (718)
T PLN03073 410 DILHLHGQKLVT 421 (718)
T ss_pred EEEEEECCEEEE
Confidence 999999999853
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=1.7e-17 Score=188.68 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=147.2
Q ss_pred ccee--cCeeeeeeeEEEeCc--EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-
Q 014621 31 SDRY--EIVPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS- 104 (421)
Q Consensus 31 ~~~y--~~~~v~~~ls~~~g~--~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~- 104 (421)
.+.+ +.+...++++..|.. -.||++||+.|++|| -|||+|.+|||||||+.+|-++. |..|.|.+||.++.
T Consensus 1130 p~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~e---KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1130 PPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGE---KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred CCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCc---eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc
Confidence 4444 456788999999864 589999999999999 99999999999999999999999 89999999999865
Q ss_pred ------CCccccccCCCCCCccchHHHHHHhhhccc---------c------c-cccccccccccccccccc-cccCceE
Q 014621 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK---------A------V-QVPIYDFKSSSRIGYRTL-EVPSSRI 161 (421)
Q Consensus 105 ------~~~ig~vfq~p~l~~~~tv~enl~~l~~~~---------~------i-~~p~~~~~~~~~~~~~~~-~~~~qrV 161 (421)
|++++.+||+|-+|. .|++.||....... . + ..|. ......-.+++-. ....|-+
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~-~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPG-GLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCc-CCCceecCCCccCChHHHHHH
Confidence 678999999999885 58888886432110 0 0 0110 0111111122222 2234778
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHc--CCCHHHHHHHH-----hceEEEccCcEEeecCCccc
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQI-----SETVYPMYKAFIEPDLQTAH 234 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~--G~ti~~vi~~~-----~d~V~~m~~g~I~p~~~~aD 234 (421)
.++||+ .-+.+++++||+|++.|+++-.-|.+-++++ +.|+.-++|++ ||+|.+|++|++.+.+.++.
T Consensus 1285 CLARAL-----Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1285 CLARAL-----LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHH-----hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 899999 8899999999999999999877777777664 67773333322 79999999999999887777
Q ss_pred EE
Q 014621 235 IK 236 (421)
Q Consensus 235 ii 236 (421)
+.
T Consensus 1360 Ll 1361 (1381)
T KOG0054|consen 1360 LL 1361 (1381)
T ss_pred HH
Confidence 64
No 375
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=2.3e-17 Score=193.82 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=131.0
Q ss_pred EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHH
Q 014621 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 46 ~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~ 124 (421)
.++.+.+|+++||++++|+ +++|+|+||||||||+++|+|++ |+.|.|.++ +.++|++|+|.+++ .|+.
T Consensus 669 ~~~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred ccCCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcHH
Confidence 3456779999999999999 99999999999999999999999 899999864 46999999998875 6999
Q ss_pred HHHHhhhcccc--ccc--c-------cccc--cccccccc---ccccccCceEEEeehhhhhhhccCCccceEEEEecCc
Q 014621 125 ENIRGLKEGKA--VQV--P-------IYDF--KSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (421)
Q Consensus 125 enl~~l~~~~~--i~~--p-------~~~~--~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~L 188 (421)
+|+.+...... ... . ...+ ......+. .......||+.||+++ ..+|.+.++|||++++
T Consensus 739 enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-----~~~p~illLDEP~saL 813 (1560)
T PTZ00243 739 GNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-----YANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-----hcCCCEEEEcCccccC
Confidence 99987432110 000 0 0000 00001111 1112235999999999 7899999999999999
Q ss_pred cHHHHHHHHHHH---HHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 189 HFDLVKRVFRDI---QRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 189 D~~~~rrIlrdl---~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
|+...+++++.+ ..+|+|+ .+.+ ..||++++|++|++...+...|+.
T Consensus 814 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 814 DAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 999877776543 1247776 5555 469999999999999888887764
No 376
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=2.9e-17 Score=145.14 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=110.2
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecC-----CCcccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS-----SRIIDG 110 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~-----~~~ig~ 110 (421)
+++++...++.-.|-++|++|.+|| |+.|.||||||||||+.-+.|.+ +. .|++.+|++.+. ++++|+
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 4677777788899999999999999 99999999999999999999998 53 799999999754 678999
Q ss_pred ccCCCCCCccchHHHHHHhhhc----ccccccccccccccccccc---------ccccccCceEEEeehhhhhhhccCCc
Q 014621 111 NFDDPRLTDYDTLLENIRGLKE----GKAVQVPIYDFKSSSRIGY---------RTLEVPSSRIVIIEGIYALSEKLRPL 177 (421)
Q Consensus 111 vfq~p~l~~~~tv~enl~~l~~----~~~i~~p~~~~~~~~~~~~---------~~~~~~~qrVlIaegl~~L~d~l~p~ 177 (421)
.||++-+|+..+|.+|+.+... +... +.......++++. .......+||.+.|++ .-.|+
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aR--r~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~L-----la~Pk 154 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNAR--RNAANAALERSGLDGAFHQDPATLSGGQRARVALLRAL-----LAQPK 154 (213)
T ss_pred eecccccccccccccceEEecCcccccHHH--HhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHH-----HhCcc
Confidence 9999999999999999987432 1110 0001111111111 0111123677778888 67899
Q ss_pred cceEEEEecCccHHHHH
Q 014621 178 IDLRVSVTGGVHFDLVK 194 (421)
Q Consensus 178 ldL~DEpts~LD~~~~r 194 (421)
++++|||.+.+|..+..
T Consensus 155 ~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 155 ALLLDEPFSRLDVALRD 171 (213)
T ss_pred eeeeCCchhHHHHHHHH
Confidence 99999999999987643
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.67 E-value=3.7e-17 Score=183.23 Aligned_cols=193 Identities=12% Similarity=0.015 Sum_probs=147.9
Q ss_pred CeeeeeeeEEEeCcEE-EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------C
Q 014621 36 IVPIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------S 105 (421)
Q Consensus 36 ~~~v~~~ls~~~g~~~-~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~ 105 (421)
...+.++++..|+.+. |++++|+.+++|| ++|+.|+|||||||++++|.|.. |++|.+.+.|++.. +
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhh
Confidence 4578899999998777 9999999999999 99999999999999999999999 99999999998764 3
Q ss_pred CccccccCCCCCCccchHHHHHHhhhcccc-----cccc----cccccccccccccc---ccccCceEEEeehhhhhhhc
Q 014621 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKA-----VQVP----IYDFKSSSRIGYRT---LEVPSSRIVIIEGIYALSEK 173 (421)
Q Consensus 106 ~~ig~vfq~p~l~~~~tv~enl~~l~~~~~-----i~~p----~~~~~~~~~~~~~~---~~~~~qrVlIaegl~~L~d~ 173 (421)
+.+||.+|+-.+++.+|.+|++.....-+. +... ...+.......... ....+.|+-++-++ .
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial-----i 714 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL-----I 714 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH-----h
Confidence 459999999999999999999987542111 1100 00011000000000 01123556666666 7
Q ss_pred cCCccceEEEEecCccHHHH---HHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 174 LRPLIDLRVSVTGGVHFDLV---KRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~---rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
-.|.+.++|||++++||... +.+++++.++|+++ |+..+..|+|+..|.+|++.-.|..-++.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 88999999999999999754 45668888877655 99999999999999999998877766664
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.67 E-value=1.6e-17 Score=144.83 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=90.7
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------CCccccccCCCCCCccchHH
Q 014621 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~tv~ 124 (421)
|+++|+++++|+ +++|+|+||||||||+++|+|.. |+.|.|.++|.+.. ++.+++++|++.+++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999 99999999999999999999999 89999999998764 34689999999888888888
Q ss_pred HHHHhhhccc---cccccc-cccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 125 ENIRGLKEGK---AVQVPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 125 enl~~l~~~~---~i~~p~-~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
++...-.... ...... .+...... .........+|+.|++++ ..+|.+.++||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al-----~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARAL-----LKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHH-----HTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHH-----HcCCCEEEEeCCCC
Confidence 8732211000 000000 00000000 011112234899999999 88999999999985
No 379
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=7.7e-16 Score=142.83 Aligned_cols=190 Identities=13% Similarity=0.217 Sum_probs=132.7
Q ss_pred eeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCC-----eeEEEECCeecC---------
Q 014621 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS-----IAVITMDNYNDS--------- 104 (421)
Q Consensus 39 v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~-----~G~I~~Dg~~~~--------- 104 (421)
+.-.+..+.|...+++.+|+++.+|| |-|++|.||||||-.+|+|+|...+ +-...+|+.++-
T Consensus 9 L~IE~~TsqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 9 LTIEFKTSQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred eEEEEecCCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 33344455678999999999999999 9999999999999999999999743 334445554431
Q ss_pred --CCccccccCCCCC--CccchHHHHHHh----hh-ccccc------cc---------cccccccccc-cccccccccCc
Q 014621 105 --SRIIDGNFDDPRL--TDYDTLLENIRG----LK-EGKAV------QV---------PIYDFKSSSR-IGYRTLEVPSS 159 (421)
Q Consensus 105 --~~~ig~vfq~p~l--~~~~tv~enl~~----l~-~~~~i------~~---------p~~~~~~~~~-~~~~~~~~~~q 159 (421)
.+.++|+||+|.. -++.++...+-. +. .++.- +. -..++..... ...+.....-|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 1357899999953 455555443322 10 11100 00 0111111000 11122333459
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHH---HHHc-CCCH------HHHHHHHhceEEEccCcEEeec
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD---IQRV-GQEP------EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrd---l~~~-G~ti------~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
+|+||-|+ +..|.+++.||||.++++.+..++.|- ++.. |.|+ ...+.+|||++-+||-|.-.++
T Consensus 166 KVMIA~A~-----AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 166 KVMIAIAL-----ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred eeeeehhh-----ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 99999999 999999999999999999987766654 4443 7777 7789999999999999999999
Q ss_pred CCcccEE
Q 014621 230 LQTAHIK 236 (421)
Q Consensus 230 ~~~aDii 236 (421)
.+.++++
T Consensus 241 a~~e~l~ 247 (330)
T COG4170 241 APSEELV 247 (330)
T ss_pred cchhHHh
Confidence 9888885
No 380
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.6e-16 Score=171.55 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=135.7
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC----CCccccccCCCCCCcc
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~ 120 (421)
.+.+|++||..+++|+ +.||.||||||||||+++|+|..+ .+|.|.+||+... ++..||+.|+-.+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 4789999999999999 999999999999999999999983 5899999996443 3567999999999999
Q ss_pred chHHHHHHhhhc---ccc-----ccccc----cc----cccccccccc----cccccCceEEEeehhhhhhhccCCccce
Q 014621 121 DTLLENIRGLKE---GKA-----VQVPI----YD----FKSSSRIGYR----TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (421)
Q Consensus 121 ~tv~enl~~l~~---~~~-----i~~p~----~~----~~~~~~~~~~----~~~~~~qrVlIaegl~~L~d~l~p~ldL 180 (421)
.||+|++.+-.. ... ....+ .+ .....+.+.. ....+.+||.|+-=+ ..+|.+++
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El-----l~~P~iLf 193 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL-----LTDPSILF 193 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH-----HcCCCEEE
Confidence 999999986321 110 00000 00 0011112210 111244788877777 88999999
Q ss_pred EEEEecCccHHHHHHH---HHHHHHcCCCH-------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 181 RVSVTGGVHFDLVKRV---FRDIQRVGQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 181 ~DEpts~LD~~~~rrI---lrdl~~~G~ti-------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+||||++||.....++ +|+++++|+|| ..-+-+.-|++..+.+|.+.-.|+..+.+
T Consensus 194 lDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 194 LDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred ecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9999999999987655 48888889998 44455677999999999998888776554
No 381
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.1e-16 Score=147.83 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=122.3
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC--------CCcc
Q 014621 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRII 108 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~--------~~~i 108 (421)
.-.++++..|+++.+|++||+.+++|| -..|+|+||||||||++.+++.. |++|.+.+-|.... ++.|
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 457889999999999999999999999 99999999999999999999999 88999998887542 3556
Q ss_pred ccccC--CCCCCccchHHHHHHhhhccc-cccccccccc-------ccccccc---------ccccccCceEEEeehhhh
Q 014621 109 DGNFD--DPRLTDYDTLLENIRGLKEGK-AVQVPIYDFK-------SSSRIGY---------RTLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 109 g~vfq--~p~l~~~~tv~enl~~l~~~~-~i~~p~~~~~-------~~~~~~~---------~~~~~~~qrVlIaegl~~ 169 (421)
|++.- +..+....++++.+....... .+....++.. ..+..+. .......+||+||||+
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL-- 186 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL-- 186 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH--
Confidence 66531 111222333333332211000 0000000000 0000000 1112234899999999
Q ss_pred hhhccCCccceEEEEecCccHHHHHHHHHHHHH---c--CCCH------HHHHHHHhceEEEccCcEEeecC
Q 014621 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---V--GQEP------EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 170 L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~---~--G~ti------~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
..+|.++++|||++++|.....++++.+.+ . +.++ .+.+-...+++..+.+|++..++
T Consensus 187 ---v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 187 ---VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred ---hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 999999999999999999877666655443 2 3333 44455566777888888776554
No 382
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.8e-16 Score=142.66 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=107.5
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC------Ccccccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~------~~ig~vf 112 (421)
.++++..+|+..++.++||.+.+|| ++-|.||||||||||+|+|+|++ |++|+|.++|..... +..-|+-
T Consensus 5 a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 5 AENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4678888899999999999999999 99999999999999999999999 999999999876542 2345666
Q ss_pred CCCCCCccchHHHHHHhhhccccc--ccccc----cccccccccc---ccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 113 DDPRLTDYDTLLENIRGLKEGKAV--QVPIY----DFKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 113 q~p~l~~~~tv~enl~~l~~~~~i--~~p~~----~~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
-.+.+-..+|+.||+.|+..-... ..... .......... +.......||.||+=. .-...+-++||
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~-----ls~~pLWiLDE 156 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW-----LSPAPLWILDE 156 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH-----cCCCCceeecC
Confidence 667778889999999998642110 00000 0001000000 0111123567777766 66778899999
Q ss_pred EecCccHHHHHHHH
Q 014621 184 VTGGVHFDLVKRVF 197 (421)
Q Consensus 184 pts~LD~~~~rrIl 197 (421)
|++++|..-...+-
T Consensus 157 P~taLDk~g~a~l~ 170 (209)
T COG4133 157 PFTALDKEGVALLT 170 (209)
T ss_pred cccccCHHHHHHHH
Confidence 99999998655443
No 383
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.62 E-value=1.1e-15 Score=145.78 Aligned_cols=177 Identities=21% Similarity=0.311 Sum_probs=128.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeE----EEECCeecCC---Ccccccc--CCCCCCccchHHHHHHhhhcc
Q 014621 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV----ITMDNYNDSS---RIIDGNF--DDPRLTDYDTLLENIRGLKEG 133 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~----I~~Dg~~~~~---~~ig~vf--q~p~l~~~~tv~enl~~l~~~ 133 (421)
.++.++||+|+||||||||+++|++++ +..|. +.+|+++... ...++.. ..|..++.....+.+..+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~~ 110 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAG 110 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHHcC
Confidence 456799999999999999999999999 66665 8999987652 2234433 345556665566666666665
Q ss_pred c-cccccccccccccccccccccccCceEEEeehhhhhhh-----ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH
Q 014621 134 K-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (421)
Q Consensus 134 ~-~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-----~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti 207 (421)
. .+..|.|++.............+..+++|++|.+++.+ .+.+..|...+++++.+... +|+.++..++|.+.
T Consensus 111 ~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~-~R~~~R~~~~g~s~ 189 (229)
T PRK09270 111 DDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLR-ERLVARKLAGGLSP 189 (229)
T ss_pred CCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHH-HHHHHHHHhcCCCH
Confidence 5 67778888776554442221223578999999998764 56678899999999877655 44444444679999
Q ss_pred HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCC
Q 014621 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (421)
Q Consensus 208 ~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~ 242 (421)
.++.+.+..+..+.+ .++.+....||++|.|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 190 EAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTAT 223 (229)
T ss_pred HHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCC
Confidence 888888887777766 4788899999999987654
No 384
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=6.8e-16 Score=147.09 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred CceEEEeehhhhhhhccCC--ccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEc-----
Q 014621 158 SSRIVIIEGIYALSEKLRP--LIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPM----- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p--~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m----- 221 (421)
.||+.|++++ ...| .++++|||++++|+....++ +++++++|.|+ ++.+ .+||++.+|
T Consensus 143 ~qrv~laral-----~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~ 216 (226)
T cd03270 143 AQRIRLATQI-----GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAG 216 (226)
T ss_pred HHHHHHHHHH-----HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCcc
Confidence 4899999999 7776 69999999999999876655 46666668887 5665 589999999
Q ss_pred -cCcEEeecC
Q 014621 222 -YKAFIEPDL 230 (421)
Q Consensus 222 -~~g~I~p~~ 230 (421)
++|+|+.++
T Consensus 217 ~~~G~iv~~g 226 (226)
T cd03270 217 VHGGEIVAQG 226 (226)
T ss_pred ccCCEEEecC
Confidence 889887653
No 385
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=5.3e-15 Score=156.56 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=127.2
Q ss_pred eeeeeeeEEEeCc-EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCC
Q 014621 37 VPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (421)
Q Consensus 37 ~~v~~~ls~~~g~-~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~ 114 (421)
....+++++.|++ +.+++++||.+.+|+ .|||+||||+|||||+|.|+|.+ |.+|.|.+... -++||..|+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~Q~ 393 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFDQH 393 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEEeh
Confidence 4567889999955 799999999999999 99999999999999999999999 88999987532 358888888
Q ss_pred CC-CCccchHHHHHHhhhccc-ccccc----cccc-------ccccccccccccccCceEEEeehhhhhhhccCCccceE
Q 014621 115 PR-LTDYDTLLENIRGLKEGK-AVQVP----IYDF-------KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 115 p~-l~~~~tv~enl~~l~~~~-~i~~p----~~~~-------~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
.. +.+..|+.+++....... ....+ .+-| .....+|++ ..|++++.-+ ...|.++++
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGE-----k~Rl~La~ll-----~~~pNvLiL 463 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGE-----KARLLLAKLL-----LQPPNLLLL 463 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhH-----HHHHHHHHHh-----ccCCCEEEE
Confidence 73 345557888887643211 00000 0111 111223332 2566666555 779999999
Q ss_pred EEEecCccHHHHHHHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEee
Q 014621 182 VSVTGGVHFDLVKRVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl~~~-G~ti-----~~vi~~~~d~V~~m~~g~I~p 228 (421)
||||..||...+..+-.-+..- |.-+ ..++..+|++++.+.+ .+..
T Consensus 464 DEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 464 DEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred cCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence 9999999999988877777665 4433 7889999999999987 5543
No 386
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=1.1e-15 Score=159.46 Aligned_cols=280 Identities=25% Similarity=0.418 Sum_probs=210.1
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCC--------C-eeEEEECCeec--C-----CCcc-ccccCCCCCCccchHH
Q 014621 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP--------S-IAVITMDNYND--S-----SRII-DGNFDDPRLTDYDTLL 124 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp--------~-~G~I~~Dg~~~--~-----~~~i-g~vfq~p~l~~~~tv~ 124 (421)
.+..++++|+.|.++|||||.+..+...+. . .-.++.|-++. + ..+. -|.|++|+.++..++.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 456689999999999999997766655441 1 22222222221 1 1223 4899999999999999
Q ss_pred HHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhh-ccCCccceEEEEecCccHHHHHHHHHHHHHc
Q 014621 125 ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (421)
Q Consensus 125 enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~ 203 (421)
..+..+.++..+..|.|++..+.+...+...+.+..+.+.+|++++|| +.+..++.+.+.+++.|.+..+++.|++.++
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999888889999999999999888776667788889999999999996 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHHHhccccccccccccee
Q 014621 204 GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDI 283 (421)
Q Consensus 204 G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i 283 (421)
|+++..+..+|.+++.+-+..+|.|++..||++|+...+ ++. +..+...+|.+.|...... .-..++
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~-----n~v------ai~l~~~~i~~~L~~~~~~--~l~~~~ 266 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGD-----NDV------AIDLIVQHILSILAEKSYV--RLYNNV 266 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecccc-----ccc------cceeeehhhhhhhhccccc--cccccc
Confidence 999999999999999999999999999999999975443 111 3344445555555432211 112357
Q ss_pred ecCCCCCCchhhhhhhhcccC---------CceEEEEEeeecCCCCeEe----eeeeeeceeeeEecccccccceeeeee
Q 014621 284 YLLPPGEDPDACQSYLRMRNR---------DGKYNLMFEEWVTDSPFII----SPRITFEVSVRLLGGLMALGYTIATIL 350 (421)
Q Consensus 284 ~~~p~~~~~~~~~~~l~~~~~---------~~~~~l~~~~~~~~~p~i~----~~~~~f~v~~~il~g~~~~g~~~~~~~ 350 (421)
+.+|++++..++.++++...+ +..+++..+.....-|+.. +|. +....+-... ...+++.+
T Consensus 267 ~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~-----~~~~~~~~~~-~~i~gv~i 340 (473)
T KOG4203|consen 267 LSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPR-----GLAYSGVNFC-KQICGVSI 340 (473)
T ss_pred eecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEeccc-----ccchhccccc-chhccCCC
Confidence 788888887777777766555 3456677788888888863 333 2222222234 77888999
Q ss_pred ecccceeecC
Q 014621 351 KRSSHIFYDD 360 (421)
Q Consensus 351 ~r~~~~~~~~ 360 (421)
.|+|++++..
T Consensus 341 ~r~g~~~~~a 350 (473)
T KOG4203|consen 341 PRSGESMETA 350 (473)
T ss_pred CcchhHHHHH
Confidence 9999998873
No 387
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.54 E-value=7.4e-15 Score=136.20 Aligned_cols=152 Identities=19% Similarity=0.276 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCcc------ccccCCCCCCccchHHHHHHhhhcccccccccc
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII------DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~i------g~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~ 141 (421)
+|||.|+||||||||++.|+..++....|++|+++...... -+.|++|..++...+.+.|..++.+.....+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998667889999997654321 247889999999999999999887765444444
Q ss_pred cccccccc-------------ccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH
Q 014621 142 DFKSSSRI-------------GYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (421)
Q Consensus 142 ~~~~~~~~-------------~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti 207 (421)
+....... ........+.+++|+||.++++ +.+++.+|++.+++++.|.+..|++.|+ |...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~----~~~~ 156 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART----GYVT 156 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcC----Cccc
Confidence 33322111 0112345668899999999988 5888999999999999888887776665 3332
Q ss_pred -----HHHHHHHhceEEEccC
Q 014621 208 -----EEIIHQISETVYPMYK 223 (421)
Q Consensus 208 -----~~vi~~~~d~V~~m~~ 223 (421)
.+....+.+.|+|||.
T Consensus 157 ~~~~w~Dp~~yf~~~v~p~y~ 177 (187)
T cd02024 157 LEGFWPDPPGYFDGHVWPMYL 177 (187)
T ss_pred cCcccCCCCcccccccchhHH
Confidence 3345566667777764
No 388
>PRK06696 uridine kinase; Validated
Probab=99.53 E-value=1.9e-14 Score=136.81 Aligned_cols=178 Identities=18% Similarity=0.258 Sum_probs=125.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcCCC----eeEEEECCeecCCCcc-ccccCCC-----CCCccchHHHHHHhhh-
Q 014621 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS----IAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENIRGLK- 131 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gllp~----~G~I~~Dg~~~~~~~i-g~vfq~p-----~l~~~~tv~enl~~l~- 131 (421)
++++++|||.|+||||||||++.|+..++. .-.+++|+|+...... ...+.++ ..++...+.+.+..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 446889999999999999999999998832 2345699998653211 1122232 4566667777776543
Q ss_pred cc--ccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHH
Q 014621 132 EG--KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (421)
Q Consensus 132 ~~--~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~ 209 (421)
.+ .....+.+++.............++..++|+||.+++.+..++.+|+.++++++.+.+..|.+.|+...+|. ..+
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 22 234455666655443322233345677999999999888888999999999999999888877788777785 455
Q ss_pred HHHHHhceEEEccCcEEeec--CCcccEEEeCCC
Q 014621 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (421)
Q Consensus 210 vi~~~~d~V~~m~~g~I~p~--~~~aDiiI~~~~ 241 (421)
....+.+++.+.++.++.+. ...||++|.|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 66777788878877776554 788999996544
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.9e-15 Score=149.73 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=122.0
Q ss_pred eeeeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Cccc
Q 014621 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (421)
Q Consensus 39 v~~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~ig 109 (421)
-.+++.|.|... --+..||++|++|| ++-|+|.||||||||++.|.|+. |++|.|.+||..... +.++
T Consensus 324 elrnvrfay~~~~FhvgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 324 ELRNVRFAYQDNAFHVGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred eeeeeeeccCcccceecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 356677777543 45789999999999 99999999999999999999999 999999999997653 3355
Q ss_pred cccCCCCCCccchH------HHHHHh----hhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccc
Q 014621 110 GNFDDPRLTDYDTL------LENIRG----LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 110 ~vfq~p~l~~~~tv------~enl~~----l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ld 179 (421)
-+|.|..+|+...- .+++.. +.-.......--.+...+.+. ..+.|+.+.-|+ .-...+.
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt-----GQkKRlAll~Al-----lEeR~Il 470 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST-----GQKKRLALLLAL-----LEERDIL 470 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCccccccccc-----chHHHHHHHHHH-----HhhCCeE
Confidence 67777666543211 222222 211111111111222222222 233565555555 3355688
Q ss_pred eEEEEecCccHHHHHH----HHHHHHHcCCCH-----HHHHHHHhceEEEccCcEEeecC
Q 014621 180 LRVSVTGGVHFDLVKR----VFRDIQRVGQEP-----EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 180 L~DEpts~LD~~~~rr----Ilrdl~~~G~ti-----~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
+.||=.++.||...|. ++-++++.|+|| .+.--..+||...|.+|++.+..
T Consensus 471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 8999999999987664 346678889999 44445568999999999987654
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=1.2e-14 Score=131.51 Aligned_cols=181 Identities=8% Similarity=0.047 Sum_probs=120.8
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC-------CccccccCCCCCCccchHHH
Q 014621 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLE 125 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~-------~~ig~vfq~p~l~~~~tv~e 125 (421)
|-..|..+..|+ ++-++||||||||||+..++|++|.+|+|.++|.++.. ++-+|..|.......+-|+.
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 445677789999 99999999999999999999999999999999997641 23455555443333334444
Q ss_pred HHHhhhccccc----ccccccccccccccc---ccccccCceEEEeehhhhhhhccC--CccceEEEEecCccHHH---H
Q 014621 126 NIRGLKEGKAV----QVPIYDFKSSSRIGY---RTLEVPSSRIVIIEGIYALSEKLR--PLIDLRVSVTGGVHFDL---V 193 (421)
Q Consensus 126 nl~~l~~~~~i----~~p~~~~~~~~~~~~---~~~~~~~qrVlIaegl~~L~d~l~--p~ldL~DEpts~LD~~~---~ 193 (421)
.+......+.+ ..-.......++.+. +....+-|||-++...+-..+..+ ..++++|||.+++|+.. .
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 44322111000 000000001111110 111234488888877766665444 47899999999999974 4
Q ss_pred HHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 194 KRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 194 rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
.+++..+...|.++ .+..-+-+|+++.+..|++...|+..++.
T Consensus 172 drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 172 DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 57778888889988 55566789999999999998888776664
No 391
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=8.3e-14 Score=156.13 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=124.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C--CeeEEEECCeecC----CCccccccCCCCCCcc
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p--~~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~ 120 (421)
+.+.+|+||+--+++|- +.+++|+||||||||+++|+|.. . -.|.|.++|+... +|.+||+-|+....+.
T Consensus 802 ~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 67899999999999999 99999999999999999999996 2 3799999999765 5779999998888899
Q ss_pred chHHHHHHhh---hcccccccc---cc--------ccc--cccccc--cccccc-cCceEEEeehhhhhhhccCC-ccce
Q 014621 121 DTLLENIRGL---KEGKAVQVP---IY--------DFK--SSSRIG--YRTLEV-PSSRIVIIEGIYALSEKLRP-LIDL 180 (421)
Q Consensus 121 ~tv~enl~~l---~~~~~i~~p---~~--------~~~--~~~~~~--~~~~~~-~~qrVlIaegl~~L~d~l~p-~ldL 180 (421)
.||+|-|.+- +....+... .| ... ....+| +.-+.. .+.|+-|+==| .-+| .+++
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL-----vA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL-----VANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE-----ecCCceeEE
Confidence 9999999763 221111110 00 000 001111 111112 23677777666 6688 8999
Q ss_pred EEEEecCccHHHHH---HHHHHHHHcCCCH--------HHHHHHHhceEEEccCc-EEe
Q 014621 181 RVSVTGGVHFDLVK---RVFRDIQRVGQEP--------EEIIHQISETVYPMYKA-FIE 227 (421)
Q Consensus 181 ~DEpts~LD~~~~r---rIlrdl~~~G~ti--------~~vi~~~~d~V~~m~~g-~I~ 227 (421)
+||||+|||.+..+ +++|.+.+.|+|| .++.++ -|++..|.+| +.+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~-FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA-FDELLLLKRGGQTV 1011 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHH-HhHHHHHhcCCeEE
Confidence 99999999999776 4558888899998 444444 4777777664 444
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6e-14 Score=146.06 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=129.5
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC--------CccccccCCC---CCCc
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDDP---RLTD 119 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~--------~~ig~vfq~p---~l~~ 119 (421)
.++++||++.+|| |+||.|--|||+|-|+++|.|.- +.+|.|.+||..... ..++|++.+. .++.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 5889999999999 99999999999999999999987 689999999997642 3478888764 5777
Q ss_pred cchHHHHHHhhh-ccc----cccccc---------ccccccccccc-ccccc---cCceEEEeehhhhhhhccCCccceE
Q 014621 120 YDTLLENIRGLK-EGK----AVQVPI---------YDFKSSSRIGY-RTLEV---PSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 120 ~~tv~enl~~l~-~~~----~i~~p~---------~~~~~~~~~~~-~~~~~---~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
.+++.+|+.... ... .+.... ..+........ ....+ -.|+|+|++.+ ...|.++++
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL-----~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL-----ATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-----hcCCCEEEE
Confidence 888999986641 110 010000 00000000000 01111 24999999999 999999999
Q ss_pred EEEecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCC
Q 014621 182 VSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQ 231 (421)
Q Consensus 182 DEpts~LD~~~---~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~ 231 (421)
||||-+.|+-. +.++++++.++|.++ +..+-.+||||.+|.+|++.....
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999864 567789999999998 777888999999999999965443
No 393
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=3.5e-14 Score=135.90 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=97.1
Q ss_pred eCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc----------------C-CCee--------EEEECCe
Q 014621 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----------------M-PSIA--------VITMDNY 101 (421)
Q Consensus 47 ~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----------------l-p~~G--------~I~~Dg~ 101 (421)
|++..++.+++ ++ +++|+||||||||||+++|.++ + ++.| .+.+++.
T Consensus 12 y~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcC
Confidence 45566666665 68 9999999999999999999843 3 4444 5555542
Q ss_pred e----cC------CCccccccCCCCCCcc-chHHHHHHhhhc-ccccccccc--------cc-cccc---cccccccccc
Q 014621 102 N----DS------SRIIDGNFDDPRLTDY-DTLLENIRGLKE-GKAVQVPIY--------DF-KSSS---RIGYRTLEVP 157 (421)
Q Consensus 102 ~----~~------~~~ig~vfq~p~l~~~-~tv~enl~~l~~-~~~i~~p~~--------~~-~~~~---~~~~~~~~~~ 157 (421)
+ .. ++.+++++|++.+++. .+..+....+.. +-....+.+ +. .... ..........
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~ 163 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQ 163 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHH
Confidence 1 11 2447788887776653 344443333321 100000000 00 0000 0000111123
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEcc
Q 014621 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPMY 222 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V~~m~ 222 (421)
.||+.|++++.... .-.|.+.++|||++++|+...+.+.+.+.+ ++.++ ...+.++||+++.+.
T Consensus 164 ~~r~~la~~l~~~~-~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 164 KSLVALALIFAIQK-CDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHhc-cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 48899999982110 014789999999999999988777654443 25555 334567899988773
No 394
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1e-13 Score=158.17 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=136.0
Q ss_pred eeeeEEEeC---cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCC
Q 014621 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (421)
Q Consensus 40 ~~~ls~~~g---~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p 115 (421)
.++.+|..+ ....|+||||++++|+ .+||+|+.|||||+|+.+|.|.+ ..+|.|.++|- ++|++|.|
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~p 591 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQP 591 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEecccc
Confidence 355566543 3459999999999999 99999999999999999999999 78999999984 89999999
Q ss_pred CCCccchHHHHHHhhhcccc------ccc--cccccc---cc--cccccccccc---cCceEEEeehhhhhhhccCCccc
Q 014621 116 RLTDYDTLLENIRGLKEGKA------VQV--PIYDFK---SS--SRIGYRTLEV---PSSRIVIIEGIYALSEKLRPLID 179 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~------i~~--p~~~~~---~~--~~~~~~~~~~---~~qrVlIaegl~~L~d~l~p~ld 179 (421)
-.++ .|++|||.+...-.+ ++. -..|+. .+ ...|.+-..+ .+||+.+|||+ --+.++-
T Consensus 592 WI~n-gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV-----Y~~adIY 665 (1381)
T KOG0054|consen 592 WIQN-GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV-----YQDADIY 665 (1381)
T ss_pred HhhC-CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH-----hccCCEE
Confidence 8775 699999998643211 000 001111 11 1122222222 35999999999 5678899
Q ss_pred eEEEEecCccHHHHHHHHHHHHH---cCCCH------HHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 180 LRVSVTGGVHFDLVKRVFRDIQR---VGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 180 L~DEpts~LD~~~~rrIlrdl~~---~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
++|-|-+++|....+.|.++.-. +++|+ .+. -.-+|.+++|++|+|.+.|.+.|+.
T Consensus 666 LLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~-L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 666 LLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF-LPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhh-hhhCCEEEEecCCeEecccCHHHHH
Confidence 99999999999988887755442 36666 333 3458999999999999999998885
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.45 E-value=4.6e-14 Score=131.92 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=95.5
Q ss_pred eeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe---------eEEEECCeecC----CCccccccCCCCCCc
Q 014621 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---------AVITMDNYNDS----SRIIDGNFDDPRLTD 119 (421)
Q Consensus 54 ~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~---------G~I~~Dg~~~~----~~~ig~vfq~p~l~~ 119 (421)
+++++++.+| +++|+||||||||||+++|++++ +.. +.+.++|.... .+.++++||++..+.
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5677787775 79999999999999999999997 332 34666665431 356899999998761
Q ss_pred cchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHH
Q 014621 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (421)
Q Consensus 120 ~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrd 199 (421)
.....+.+....... ...+......++ ...||+.+++++.... .-.|.+.++|||++++|+.....+.+-
T Consensus 90 ~~~~~~~~~~~l~~~----~~~~~~~~~LS~-----G~kqrl~la~~l~~~~-~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 90 SIISQGDVSEIIEAP----GKKVQRLSLLSG-----GEKALTALALLFAIFR-VRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred eEEehhhHHHHHhCC----CccccchhhcCH-----HHHHHHHHHHHHHHhc-cCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 110011111111110 001111111222 2347888888872110 124589999999999999987766644
Q ss_pred HHH--cCCCH------HHHHHHHhceEEEccC
Q 014621 200 IQR--VGQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 200 l~~--~G~ti------~~vi~~~~d~V~~m~~ 223 (421)
+.+ ++.++ ++.+ ++||+++.++.
T Consensus 160 l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 160 LKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 433 25555 5554 57999888765
No 396
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=1.6e-13 Score=133.56 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=107.6
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHH-----hcC------CC-----------eeEEEECCeecCC--
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-----NFM------PS-----------IAVITMDNYNDSS-- 105 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~-----gll------p~-----------~G~I~~Dg~~~~~-- 105 (421)
...|++|++.++.|. +++|.|+||||||||++.+. ..+ |. .-.+.+|...+.+
T Consensus 8 ~~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~ 84 (261)
T cd03271 8 ENNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTP 84 (261)
T ss_pred hhcCCCceeeccCCc---EEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCC
Confidence 457899999999999 99999999999999999763 111 11 1145566554431
Q ss_pred C-c---cccccCC---------------------------CCCCccchHHHHHHhhhcccccccc---cccccccc-ccc
Q 014621 106 R-I---IDGNFDD---------------------------PRLTDYDTLLENIRGLKEGKAVQVP---IYDFKSSS-RIG 150 (421)
Q Consensus 106 ~-~---ig~vfq~---------------------------p~l~~~~tv~enl~~l~~~~~i~~p---~~~~~~~~-~~~ 150 (421)
+ . ...+||+ ...+..+|+.+++.++..-...... ........ ..+
T Consensus 85 rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 85 RSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred CCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhc
Confidence 1 1 1223432 2223456777777665321111000 00000000 001
Q ss_pred c---ccccccCceEEEeehhhhhhhccC---CccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHh
Q 014621 151 Y---RTLEVPSSRIVIIEGIYALSEKLR---PLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQIS 215 (421)
Q Consensus 151 ~---~~~~~~~qrVlIaegl~~L~d~l~---p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~ 215 (421)
. .......||+.+++++ ..+ |.+.++|||+++||+.....++ +++.++|.|+ ++++. .|
T Consensus 165 ~~~~~LSgGe~QRl~LAraL-----~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKEL-----SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred CccccCCHHHHHHHHHHHHH-----hcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 0 1111234899999998 543 7899999999999999766554 6666678887 66664 69
Q ss_pred ceEEEc------cCcEEeecCC
Q 014621 216 ETVYPM------YKAFIEPDLQ 231 (421)
Q Consensus 216 d~V~~m------~~g~I~p~~~ 231 (421)
|+++.| .+|+|...+.
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCC
Confidence 999999 7898876653
No 397
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.36 E-value=1.2e-13 Score=130.45 Aligned_cols=158 Identities=12% Similarity=0.085 Sum_probs=92.8
Q ss_pred EeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCCCccccccCCCCCCccchHH
Q 014621 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 46 ~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~ 124 (421)
.|+...+++++++ + ++||+|||||||||++++|..... .. .....+.+++++++..+++..++.
T Consensus 13 ~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~G~~~-------~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 13 SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVFGFRA-------SKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHhccCH-------HHhhhhhHHHHhcCCCCCCCCceE
Confidence 5677778888877 7 999999999999999999984431 11 011124577777766655554444
Q ss_pred HHHHhhhc----------ccccccc-----------cccccccc-ccccccccccCceEEEeehhhhhhhcc----CCcc
Q 014621 125 ENIRGLKE----------GKAVQVP-----------IYDFKSSS-RIGYRTLEVPSSRIVIIEGIYALSEKL----RPLI 178 (421)
Q Consensus 125 enl~~l~~----------~~~i~~p-----------~~~~~~~~-~~~~~~~~~~~qrVlIaegl~~L~d~l----~p~l 178 (421)
+++..... +.....+ ..+..... ...........+|+.+++++ .. .|.+
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al-----~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVF-----ALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHH-----HhcccCCCCE
Confidence 43332211 0000000 00000000 00000111123788888877 43 3689
Q ss_pred ceEEEEecCccHHHHHHHH---HHHHHcCCCH----HHHHHHHhceEEEccC
Q 014621 179 DLRVSVTGGVHFDLVKRVF---RDIQRVGQEP----EEIIHQISETVYPMYK 223 (421)
Q Consensus 179 dL~DEpts~LD~~~~rrIl---rdl~~~G~ti----~~vi~~~~d~V~~m~~ 223 (421)
+++|||++++|+.....+. +++.+.+.++ ...+..+||++.+|+.
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999998766555 4443333333 4556789999998864
No 398
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.33 E-value=7.8e-13 Score=124.78 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=95.1
Q ss_pred eeeeeEEe-cCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECC----ee--cCCCccccccCCCCCC------
Q 014621 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN----YN--DSSRIIDGNFDDPRLT------ 118 (421)
Q Consensus 54 ~~Vsl~i~-~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg----~~--~~~~~ig~vfq~p~l~------ 118 (421)
..++|... +|+ +++|+|+||||||||+++|++.+ +..+....+. .. .....+++.||++...
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERS 94 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEe
Confidence 44555433 588 99999999999999999999654 3333333221 11 1133577888876431
Q ss_pred ccchHHHHHHh--hhccccccccccccccccccccccccccCceEEEeehhhhhhh------ccCCccceEEEEecCccH
Q 014621 119 DYDTLLENIRG--LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE------KLRPLIDLRVSVTGGVHF 190 (421)
Q Consensus 119 ~~~tv~enl~~--l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d------~l~p~ldL~DEpts~LD~ 190 (421)
......+.... ...+. . ....+......++ ...+|+.+++++.. .+ ...|.+.++|||++++|+
T Consensus 95 ~gl~~~~~~~~~~l~~g~-l-~~~l~~~~~~lS~-----G~~~r~~la~al~~-~p~~~~~~~~~~~~lllDEp~~~lD~ 166 (213)
T cd03279 95 RGLDYDQFTRIVLLPQGE-F-DRFLARPVSTLSG-----GETFLASLSLALAL-SEVLQNRGGARLEALFIDEGFGTLDP 166 (213)
T ss_pred cCCCHHHHHHhhhhhhcc-h-HHHhcCCccccCH-----HHHHHHHHHHHHHh-HHHhhhccCCCCCEEEEeCCcccCCH
Confidence 11111111111 00000 0 0000111111122 23478888888821 11 236789999999999999
Q ss_pred HHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccCcE
Q 014621 191 DLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYKAF 225 (421)
Q Consensus 191 ~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~g~ 225 (421)
.....+ +++++++|.|+ ++.+.++|+++.++++|-
T Consensus 167 ~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 167 EALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 876554 46666667777 788899999999998874
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=126.20 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=136.3
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec-C--------CCcc
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-S--------SRII 108 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~-~--------~~~i 108 (421)
.++++..- ....++++|||++.+|| |+||+|-+|-|-+.|+.+|+|+. |.+|.|.++|.+. . +..+
T Consensus 260 V~~L~v~~~~~~~~v~~vs~~Vr~GE---IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 260 VEDLSVKDRRGVTAVKDVSFEVRAGE---IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EeeeEeecCCCCceeeeeeeEEecCc---EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 44565553 23688999999999999 99999999999999999999998 7789999999985 2 2357
Q ss_pred ccccCCC---CCCccchHHHHHHhhhcccc-------ccc-----------ccccccccccccc-cccc---ccCceEEE
Q 014621 109 DGNFDDP---RLTDYDTLLENIRGLKEGKA-------VQV-----------PIYDFKSSSRIGY-RTLE---VPSSRIVI 163 (421)
Q Consensus 109 g~vfq~p---~l~~~~tv~enl~~l~~~~~-------i~~-----------p~~~~~~~~~~~~-~~~~---~~~qrVlI 163 (421)
++++++. .+...+++.+|+........ +.. ..|+-.. .... .... ...|++++
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~--~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA--PSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC--CCCCcchhhcCCcceehhhh
Confidence 8899875 56777899999876432111 000 0111110 0000 0111 12499999
Q ss_pred eehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccCcEEeecCCcc
Q 014621 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYKAFIEPDLQTA 233 (421)
Q Consensus 164 aegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~a 233 (421)
+|=+ .-+|.+++...||-++|.-.+..+. .+.+++|..+ .+.+...|||+++|++|++....+..
T Consensus 415 aREl-----~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 415 AREL-----ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hhhh-----ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999 9999999999999999998776665 4455668887 78889999999999999997655443
No 400
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.29 E-value=4.9e-13 Score=125.62 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=92.4
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHH----hcC-CCeeEEEECCee----cCCCccccccCCCC-----CCccch
Q 014621 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNYN----DSSRIIDGNFDDPR-----LTDYDT 122 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~----gll-p~~G~I~~Dg~~----~~~~~ig~vfq~p~-----l~~~~t 122 (421)
++++.+| +++|+|+||||||||+++|. |.. |+.+.+..+... .....+++.||++. .....+
T Consensus 17 ~l~~~~g----~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP----LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC----eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3444554 89999999999999999995 666 555544422211 12345788888872 233347
Q ss_pred HHHHHHhhhccccccccccccccccccccccccccCce------EEEeehhhhhhhccCCccceEEEEecCccHHHHH-H
Q 014621 123 LLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR------IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVK-R 195 (421)
Q Consensus 123 v~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qr------VlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~r-r 195 (421)
+.+++.+...++ +.. ..+......++++ .++ +.+++++ ..+|.+.++|||++++|+.... +
T Consensus 93 ~~~~~~~~~~~~-~~~-~~~~~~~~LS~G~-----~~~~~la~rlala~al-----~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 93 ILENVIFCHQGE-SNW-PLLDMRGRCSGGE-----KVLASLIIRLALAETF-----GSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred HhhceeeechHH-HHH-HHhcCccccCccH-----HHHHHHHHHHHHHHHh-----ccCCCEEEEcCCccccCHHHHHHH
Confidence 777776532111 100 0111112222222 243 4566777 7899999999999999998766 4
Q ss_pred H---HHHHHHc-CCCH------HHHHHHHhceEEEccC
Q 014621 196 V---FRDIQRV-GQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 196 I---lrdl~~~-G~ti------~~vi~~~~d~V~~m~~ 223 (421)
+ +++++++ |.++ ++.+ ..||+++.+.+
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~ 197 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEee
Confidence 4 4555554 6666 5554 46888887754
No 401
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.28 E-value=2.8e-11 Score=116.90 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=116.8
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC---C---CeeEEEECCeecCCCcc---cc--ccCCCCCCccchHHHHHHh
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSRII---DG--NFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---p---~~G~I~~Dg~~~~~~~i---g~--vfq~p~l~~~~tv~enl~~ 129 (421)
..++.|+||||+|+.|+||||+++.+..++ | ..-.|.|||++.....+ |. ---.|..||...+.+.+..
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 556779999999999999999999999886 3 36789999997653211 11 1135778998889999988
Q ss_pred hhcccc-ccccccccccccccccccccccCceEEEeehhhhhhh-----ccCCccceEEEEecCccHHHHHHHHHHHHHc
Q 014621 130 LKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (421)
Q Consensus 130 l~~~~~-i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d-----~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~ 203 (421)
++.+.. +..|+|++...+...++.......+++|+||+++|.+ .+.+.+|+..+++++.+.-. ++++.+...-
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le-~wyi~Rfl~~ 235 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLE-ERYIERFLKF 235 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHH-HHHHHHHHhc
Confidence 886554 8899999999999887888888899999999999995 35678899999998755433 3444444344
Q ss_pred CCCHHHHHHHHhceEEEc
Q 014621 204 GQEPEEIIHQISETVYPM 221 (421)
Q Consensus 204 G~ti~~vi~~~~d~V~~m 221 (421)
|.+....-..+..+-.+|
T Consensus 236 g~~a~~~~~~~~~~~~~~ 253 (283)
T COG1072 236 GLTAFEDPASYFHNYAPL 253 (283)
T ss_pred ccchhhChhhHhhccCcc
Confidence 555433333343333333
No 402
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.27 E-value=1.6e-11 Score=125.38 Aligned_cols=163 Identities=22% Similarity=0.313 Sum_probs=104.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC-CC---eeEEEECCeecCCC---ccc-cccC--------CCCCCccchHHHHH
Q 014621 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSSR---IID-GNFD--------DPRLTDYDTLLENI 127 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll-p~---~G~I~~Dg~~~~~~---~ig-~vfq--------~p~l~~~~tv~enl 127 (421)
.+|++|||+|++|||||||++.|.+++ +. .|.|++||++++.. ... -.++ .|...|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 368999999999999999999999998 54 89999999987521 111 1122 24456655566666
Q ss_pred Hhh----hccccccccccccccccccccc------cccccCceEEEeehhhhhhhccCC---------------------
Q 014621 128 RGL----KEGKAVQVPIYDFKSSSRIGYR------TLEVPSSRIVIIEGIYALSEKLRP--------------------- 176 (421)
Q Consensus 128 ~~l----~~~~~i~~p~~~~~~~~~~~~~------~~~~~~qrVlIaegl~~L~d~l~p--------------------- 176 (421)
..+ +.+..+..|.||+..+...+.+ .....+..|+|+||.++......+
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 665 4577889999999986644422 122467899999998876632111
Q ss_pred -----ccceEEEEe-cCccHHHHHHHHHHHH--HcCC-CH-HHHHHHHhceEEEccCcEE
Q 014621 177 -----LIDLRVSVT-GGVHFDLVKRVFRDIQ--RVGQ-EP-EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 177 -----~ldL~DEpt-s~LD~~~~rrIlrdl~--~~G~-ti-~~vi~~~~d~V~~m~~g~I 226 (421)
.+|.+.... .+.+....||+.++.. +.|. .+ .+.+.++.++.+|.|+-+.
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y~ 429 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAYL 429 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHH
Confidence 123322222 2234445677765443 3332 22 5557778888888766543
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.26 E-value=8.5e-12 Score=132.55 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=113.2
Q ss_pred eeeeeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCCCccccccCCC
Q 014621 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDP 115 (421)
Q Consensus 38 ~v~~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-~~G~I~~Dg~~~~~~~ig~vfq~p 115 (421)
.-.++++...+ +...|++.++.+++|+ -+-|.|+||||||||+|+|+|+-| .+|.|.+- ....+-|++|.|
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~~~~~lflpQ~P 465 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMP----ADSALLFLPQRP 465 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecC----CCCceEEecCCC
Confidence 34567776653 4689999999999999 999999999999999999999986 57888764 233467889998
Q ss_pred CCCccchHHHHHHhhhcccccccc------------cccccccccccc--ccccccCceEEEeehhhhhhhccCCccceE
Q 014621 116 RLTDYDTLLENIRGLKEGKAVQVP------------IYDFKSSSRIGY--RTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (421)
Q Consensus 116 ~l~~~~tv~enl~~l~~~~~i~~p------------~~~~~~~~~~~~--~~~~~~~qrVlIaegl~~L~d~l~p~ldL~ 181 (421)
.+.. .|+++.+..+......... .......+.... .....+.||+..||-+ ..+|++.++
T Consensus 466 Y~p~-GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil-----L~kP~~v~L 539 (604)
T COG4178 466 YLPQ-GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-----LHKPKWVFL 539 (604)
T ss_pred CCCC-ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH-----HcCCCEEEE
Confidence 7654 4888888876543211100 000000000000 1112245999999999 899999999
Q ss_pred EEEecCccHHHHHHHHHHHHHc--CCCH
Q 014621 182 VSVTGGVHFDLVKRVFRDIQRV--GQEP 207 (421)
Q Consensus 182 DEpts~LD~~~~rrIlrdl~~~--G~ti 207 (421)
||.|+++|+....++.+-++++ +.|+
T Consensus 540 DEATsALDe~~e~~l~q~l~~~lp~~tv 567 (604)
T COG4178 540 DEATSALDEETEDRLYQLLKEELPDATV 567 (604)
T ss_pred ecchhccChHHHHHHHHHHHhhCCCCEE
Confidence 9999999999999988888773 6665
No 404
>PRK07667 uridine kinase; Provisional
Probab=99.22 E-value=1.5e-11 Score=114.51 Aligned_cols=164 Identities=16% Similarity=0.290 Sum_probs=104.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcC----CCeeEEEECCeecCCCcc-ccccCCC-----CCCccchHHHHH-Hhhhcc
Q 014621 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENI-RGLKEG 133 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gll----p~~G~I~~Dg~~~~~~~i-g~vfq~p-----~l~~~~tv~enl-~~l~~~ 133 (421)
.+++|||.|++||||||+++.|...+ .....+++|++...+..- ...+.+. ..++...+.+.+ ..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 35799999999999999999999886 245689999986532110 0001111 112333344443 445556
Q ss_pred ccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHH
Q 014621 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (421)
Q Consensus 134 ~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~ 213 (421)
..+..|.+++....... .....++..++|+||.+++....++.+|..++++++.+.+..|.+. +.|.+..+..
T Consensus 96 ~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~----r~~~~~~~~~-- 168 (193)
T PRK07667 96 TKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESE----ETQKNLSKFK-- 168 (193)
T ss_pred CeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhc----ccHhHHHHHH--
Confidence 67788988887755432 2233456789999999987777888999999999998876555432 2244443333
Q ss_pred HhceEEEccCcEEee--cCCcccEEE
Q 014621 214 ISETVYPMYKAFIEP--DLQTAHIKI 237 (421)
Q Consensus 214 ~~d~V~~m~~g~I~p--~~~~aDiiI 237 (421)
.+..+-++.++.. ....||+++
T Consensus 169 --~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 169 --NRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred --HHhHHHHHHHHhhcChHhhCcEEe
Confidence 3333445555443 256688875
No 405
>PLN02796 D-glycerate 3-kinase
Probab=99.21 E-value=3.4e-11 Score=120.81 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=86.0
Q ss_pred EEeeeeeEE---ecCC--ceeEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECCeecCCCc-cccccCCC------
Q 014621 52 VIRACQLLA---QKNH--GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSRI-IDGNFDDP------ 115 (421)
Q Consensus 52 ~L~~Vsl~i---~~Ge--~~~IigIiGpSGSGKSTL~r~L~gll-p---~~G~I~~Dg~~~~~~~-ig~vfq~p------ 115 (421)
+++.+++.+ ++|+ +|+++||+|+||||||||++.|.+++ + ..|.|++||++++... .....|+|
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~ 160 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLE 160 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhh
Confidence 566777776 3444 48899999999999999999999998 4 3799999999876322 12223443
Q ss_pred -----CCCccchHHHHHHhhh----cccccccccccccccccccccc------ccccCceEEEeehhhhhh
Q 014621 116 -----RLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSSRIGYRT------LEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 116 -----~l~~~~tv~enl~~l~----~~~~i~~p~~~~~~~~~~~~~~------~~~~~qrVlIaegl~~L~ 171 (421)
..++...+.+++..++ .+..+..|.||+..+.+.+.+. ....+.+|+|+||.++-.
T Consensus 161 ~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~ 231 (347)
T PLN02796 161 LRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGF 231 (347)
T ss_pred cCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCC
Confidence 3455555677777766 4667899999999876544321 223568999999987643
No 406
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.21 E-value=9.2e-12 Score=128.99 Aligned_cols=177 Identities=14% Similarity=0.190 Sum_probs=115.2
Q ss_pred eeeeeeEEEeCcE-EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCC
Q 014621 38 PIEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (421)
Q Consensus 38 ~v~~~ls~~~g~~-~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p 115 (421)
.+..+++|.|.+. .+.++++|-+..++ .++++||||+|||||+|.+.|.+ |..|.|+-..- ..+++.-||.
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H----~~~~~y~Qh~ 462 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH----NKLPRYNQHL 462 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhcccccccccccccc----ccchhhhhhh
Confidence 3567888988544 68899999999999 99999999999999999999999 99998874322 1223222332
Q ss_pred C--CCccchHHHHHHhhhcc-ccc-cc----cccccccccc-ccc-ccccccCceEEEeehhhhhhhccCCccceEEEEe
Q 014621 116 R--LTDYDTLLENIRGLKEG-KAV-QV----PIYDFKSSSR-IGY-RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (421)
Q Consensus 116 ~--l~~~~tv~enl~~l~~~-~~i-~~----p~~~~~~~~~-~~~-~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpt 185 (421)
. +--..+..+++..-... ... .+ -.|.+.-... ... ........||+.++.. .-.|.++++||||
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~-----~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA-----VKQPHLLLLDEPT 537 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH-----hcCCcEEEecCCC
Confidence 1 11112233333221110 000 00 0111110000 000 1111223667666666 7789999999999
Q ss_pred cCccHHHHHHHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEE
Q 014621 186 GGVHFDLVKRVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFI 226 (421)
Q Consensus 186 s~LD~~~~rrIlrdl~~~-G~ti-----~~vi~~~~d~V~~m~~g~I 226 (421)
.++|...+..+-.-+++- |.-+ .-++.++++.+++..++.+
T Consensus 538 nhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred cCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCce
Confidence 999999999988888886 5222 6789999999999998876
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7.1e-12 Score=129.18 Aligned_cols=178 Identities=14% Similarity=0.100 Sum_probs=111.2
Q ss_pred eeeeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc----CCCeeEEEECCeec-------CCC
Q 014621 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYND-------SSR 106 (421)
Q Consensus 38 ~v~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl----lp~~G~I~~Dg~~~-------~~~ 106 (421)
...++++..||.+.+|.+-++++..|. -+|++|+||+|||||+|+|+.- +|..-++.-|.... .-.
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTE 157 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHH
Confidence 356789999999999999999999999 9999999999999999999972 13322222221100 001
Q ss_pred ccccccCCCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 107 ~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
...++.+++.+....+..+.....+.+-..............+|+ -.-|+.+|||+ -..|.++|+||||.
T Consensus 158 ~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGG-----WrMrlaLARAl-----f~~pDlLLLDEPTN 227 (582)
T KOG0062|consen 158 RLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGG-----WRMRLALARAL-----FAKPDLLLLDEPTN 227 (582)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcc-----hhhHHHHHHHH-----hcCCCEEeecCCcc
Confidence 123334443332221222111101111110000001111112221 23577889999 88999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 187 GVHFDLVKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 187 ~LD~~~~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
-||...+.++-.-++.-+.|+ ..++...|..++-.++.++.-
T Consensus 228 hLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~ 275 (582)
T KOG0062|consen 228 HLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDY 275 (582)
T ss_pred cchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhh
Confidence 999999988887777766665 677777777777777666543
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.17 E-value=7.8e-11 Score=132.25 Aligned_cols=72 Identities=13% Similarity=0.253 Sum_probs=58.8
Q ss_pred CceEEEeehhhhhhhccCC---ccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc----
Q 014621 158 SSRIVIIEGIYALSEKLRP---LIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p---~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.||+.|++++ ...| .+.++|||+++||+.....++ +++.++|.|+ ++++. .||+++.|
T Consensus 836 kQRl~LAraL-----~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~ 909 (943)
T PRK00349 836 AQRVKLAKEL-----SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEG 909 (943)
T ss_pred HHHHHHHHHH-----hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCc
Confidence 4899999998 6666 899999999999999776654 5666678887 66664 79999999
Q ss_pred --cCcEEeecCCcccE
Q 014621 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
.+|++...+..+++
T Consensus 910 G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 910 GDGGGEIVATGTPEEV 925 (943)
T ss_pred CCCCCEEEEeCCHHHH
Confidence 78999888877776
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.17 E-value=2.1e-11 Score=126.39 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=110.3
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCc-------cccc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRI-------IDGN 111 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~-------ig~v 111 (421)
..++++.+.++.+++|+.|++..|+ -+||+|+|||||||++++|.+-. |..- ++|-|.+.+.. +..+
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p~--~~d~y~ls~e~~ps~~~av~~v 152 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIPE--HIDFYLLSREIEPSEKQAVQAV 152 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCCc--ccchhhhcccCCCchHHHHHHH
Confidence 4577888889999999999999999 99999999999999999999998 6322 23333222111 1111
Q ss_pred cCCCCCCccch---HHHHHHhhhc------------------ccccccccc-------------cccccccccccccccc
Q 014621 112 FDDPRLTDYDT---LLENIRGLKE------------------GKAVQVPIY-------------DFKSSSRIGYRTLEVP 157 (421)
Q Consensus 112 fq~p~l~~~~t---v~enl~~l~~------------------~~~i~~p~~-------------~~~~~~~~~~~~~~~~ 157 (421)
++... -.... ..+.+..... ...++...+ +......++ ..
T Consensus 153 ~~~~~-~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg-----Gw 226 (614)
T KOG0927|consen 153 VMETD-HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG-----GW 226 (614)
T ss_pred hhhhH-HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc-----hH
Confidence 10000 00000 0011100000 000000000 000001111 11
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCC-CH------HHHHHHHhceEEEccCcE-Eeec
Q 014621 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ-EP------EEIIHQISETVYPMYKAF-IEPD 229 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~-ti------~~vi~~~~d~V~~m~~g~-I~p~ 229 (421)
..|+.+++++ ..+|.++++||||..||+.....+-.-+.+... ++ .+.+..+|.+++-++.+. +.-.
T Consensus 227 rmR~aLAr~L-----f~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 227 RMRAALARAL-----FQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred HHHHHHHHHH-----hcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 2688899999 899999999999999999988777766665544 34 789999999999999988 4444
Q ss_pred CCc
Q 014621 230 LQT 232 (421)
Q Consensus 230 ~~~ 232 (421)
|..
T Consensus 302 Gny 304 (614)
T KOG0927|consen 302 GNY 304 (614)
T ss_pred CCH
Confidence 433
No 410
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=5.1e-12 Score=122.09 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CC-eeEEEECCe-ec---------CCCccccccCCCC---------CCccchHHHH
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY-ND---------SSRIIDGNFDDPR---------LTDYDTLLEN 126 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~-~G~I~~Dg~-~~---------~~~~ig~vfq~p~---------l~~~~tv~en 126 (421)
+++|+||||||||||+++|++++ +. .|.+...+. ++ ....++++||++. +.+..++.++
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 89999999999999999999999 54 457777654 21 1236788999853 2344555555
Q ss_pred HHhhhcccc-cc-ccc-c-c-ccccccccc-----------------------------ccccccCceEEEeehhhhhhh
Q 014621 127 IRGLKEGKA-VQ-VPI-Y-D-FKSSSRIGY-----------------------------RTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 127 l~~l~~~~~-i~-~p~-~-~-~~~~~~~~~-----------------------------~~~~~~~qrVlIaegl~~L~d 172 (421)
+........ .. ... . + .......+. .......|++.+++++..+.
T Consensus 107 I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~- 185 (251)
T cd03273 107 IVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL- 185 (251)
T ss_pred EEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh-
Confidence 432211000 00 000 0 0 000000000 01111238888888883211
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH-----HHHHHHHhceEEEc
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP-----EEIIHQISETVYPM 221 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti-----~~vi~~~~d~V~~m 221 (421)
...|.+.++||||+++|+.....+.+.+.+ +|.++ ...+...||+++-+
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~ 241 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRT 241 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEE
Confidence 135689999999999999987776654443 46654 22333457776544
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.11 E-value=1.2e-10 Score=98.39 Aligned_cols=70 Identities=17% Similarity=0.036 Sum_probs=57.4
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC-------CCccccccCCCCCCccch
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~-------~~~ig~vfq~p~l~~~~t 122 (421)
..+|++++|.+++|+ +++|+||||||||||++++. .|.+.++|.+.. ++..++.+|+ + -..+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--l-f~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--G-LEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--c-chhh
Confidence 578999999999999 99999999999999999986 678899988653 2345667776 3 3468
Q ss_pred HHHHHHhh
Q 014621 123 LLENIRGL 130 (421)
Q Consensus 123 v~enl~~l 130 (421)
+++||...
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999773
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.11 E-value=9.8e-11 Score=119.44 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhccc-
Q 014621 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGK- 134 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~- 134 (421)
.-++..|| ++|++||||-|||||++.|+|.+ |+.|. .. .-+++|-+|--..-...||.+.+.......
T Consensus 361 ~G~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~-~~------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~ 430 (591)
T COG1245 361 EGEIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAF 430 (591)
T ss_pred CCeeecce---EEEEECCCCcchHHHHHHHhccccCCCCC-Cc------cceEeecceeecCCCCCcHHHHHHHhhhhhc
Confidence 34566788 99999999999999999999999 99886 11 123555555433333456766665432110
Q ss_pred -------ccccc-----ccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHH---HHHHHHH
Q 014621 135 -------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRD 199 (421)
Q Consensus 135 -------~i~~p-----~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~---~rrIlrd 199 (421)
.+-.| .++......+|+ ..|||+||-++ .-...+-++|||.+-||.+. ..+++|+
T Consensus 431 ~~s~~~~ei~~pl~l~~i~e~~v~~LSGG-----ELQRvaIaa~L-----~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 431 GSSYFKTEIVKPLNLEDLLERPVDELSGG-----ELQRVAIAAAL-----SREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred ccchhHHhhcCccchHHHHhcccccCCch-----hHHHHHHHHHh-----ccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 11111 122222233333 34899999999 88889999999999999974 4566777
Q ss_pred HHHc-CCCH------HHHHHHHhceEEEc
Q 014621 200 IQRV-GQEP------EEIIHQISETVYPM 221 (421)
Q Consensus 200 l~~~-G~ti------~~vi~~~~d~V~~m 221 (421)
+.+. +.|. .-.+..++|++++.
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF 529 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVF 529 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEE
Confidence 6654 5554 33345566666555
No 413
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=3.1e-10 Score=127.92 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=150.4
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC----CeeEEEECCeecC----CCccccccCCCCCCccc
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDYD 121 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp----~~G~I~~Dg~~~~----~~~ig~vfq~p~l~~~~ 121 (421)
+..|++++..+++|+ ++-+.|+.|||||||+++++|.++ ..|.|+.||++.. ++.++|+.|+--.++.+
T Consensus 128 ~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 579999999999999 999999999999999999999972 3679999998653 46688999988889999
Q ss_pred hHHHHHHhhhccccc----c-cc--cc--------------cccccccccccc----ccccCceEEEeehhhhhhhccCC
Q 014621 122 TLLENIRGLKEGKAV----Q-VP--IY--------------DFKSSSRIGYRT----LEVPSSRIVIIEGIYALSEKLRP 176 (421)
Q Consensus 122 tv~enl~~l~~~~~i----~-~p--~~--------------~~~~~~~~~~~~----~~~~~qrVlIaegl~~L~d~l~p 176 (421)
||++.+.+....+.. + .. .+ ++.....+|... ....+.||-++|.+ .-.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~-----v~~~ 279 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML-----VGPA 279 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee-----ecCc
Confidence 999999886432211 1 11 10 011111222111 11235899999999 8899
Q ss_pred ccceEEEEecCccHHHHHHHHHHHH---Hc-CCCH-------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCcc
Q 014621 177 LIDLRVSVTGGVHFDLVKRVFRDIQ---RV-GQEP-------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (421)
Q Consensus 177 ~ldL~DEpts~LD~~~~rrIlrdl~---~~-G~ti-------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~ 245 (421)
.+...||+|.|||..++-++++.++ .. +.|. ...+-..-|.|.+|++|+++-.|+..+++- =|.- -
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~--yFe~-~ 356 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP--YFED-M 356 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH--HHHh-c
Confidence 9999999999999998877764443 32 5554 344556779999999999999998887752 1111 3
Q ss_pred cccCCeeeccCCCcchHHHHHHHhc
Q 014621 246 GFQNPTYILKSTRPVTVDEIKAVMS 270 (421)
Q Consensus 246 ~~~~p~~v~k~~~~~~~~~i~~~l~ 270 (421)
|+.-| ....+.|+++++.+
T Consensus 357 Gf~cP------~r~~~ADfLt~vts 375 (1391)
T KOG0065|consen 357 GFKCP------PRKGTADFLTEVTS 375 (1391)
T ss_pred CccCC------CccCHHHHHHHhhc
Confidence 45555 77888888888877
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.07 E-value=7.7e-11 Score=110.39 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=77.7
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhh
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGL 130 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l 130 (421)
.+++++++.. |+ +++|+||||||||||+|+|++... +..+|.+...+ .+++|...++...++.+++...
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a~--~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCAS--SFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEecC--ccCcccceEEEeccchhccccc
Confidence 4666666654 68 999999999999999999998651 22345444332 3567766788888888888653
Q ss_pred hccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHH----HHHHHHHcCCC
Q 014621 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKR----VFRDIQRVGQE 206 (421)
Q Consensus 131 ~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rr----Ilrdl~~~G~t 206 (421)
......+ ..+.. .++.......|.+.++|||++++|+..... +++.+.+.|.+
T Consensus 84 ~s~~~~e--------~~~~~---------------~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t 140 (199)
T cd03283 84 ISYFYAE--------LRRLK---------------EIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140 (199)
T ss_pred cChHHHH--------HHHHH---------------HHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 2110000 00000 000000014789999999999999986543 44666656666
Q ss_pred H
Q 014621 207 P 207 (421)
Q Consensus 207 i 207 (421)
+
T Consensus 141 i 141 (199)
T cd03283 141 G 141 (199)
T ss_pred E
Confidence 5
No 415
>PRK06547 hypothetical protein; Provisional
Probab=99.06 E-value=4.2e-10 Score=103.14 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=97.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCccccccCCCCCCccchHHHHHHhhhccccccccccc
Q 014621 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (421)
Q Consensus 63 Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~~l~~~~~i~~p~~~ 142 (421)
+..+.+|+|.|+|||||||+++.|+..+ ....+++|+++.....+. .....+.+.+.. .+.....+ |+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~~--------~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGLA--------AASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccCC--------hHHHHHHHHHHh--CCCCceec-CC
Confidence 3457799999999999999999999886 455778888764322110 011223333332 34444444 66
Q ss_pred cccccccccccccccCceEEEeehhhhhhhccCCccc-----eEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhce
Q 014621 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (421)
Q Consensus 143 ~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ld-----L~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~ 217 (421)
+....... ...+.+..++|++|.++++++.++.++ +.++++++.|.+..|.+.||- . .+... ++
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~----~-~~~~~----~~ 148 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDP----D-YAPHW----EM 148 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc----h-hhHHH----HH
Confidence 66543322 223445678999999999988888899 999999999998887777762 2 22222 22
Q ss_pred EEEccCcEEe--ecCCcccEEE
Q 014621 218 VYPMYKAFIE--PDLQTAHIKI 237 (421)
Q Consensus 218 V~~m~~g~I~--p~~~~aDiiI 237 (421)
..+.++.++. ...+.||+++
T Consensus 149 w~~~e~~~~~~~~~~~~ad~~~ 170 (172)
T PRK06547 149 WAAQEERHFARYDPRDVADWLG 170 (172)
T ss_pred HHHHHHHHHhcCCChhccEEEe
Confidence 2344444443 3455777764
No 416
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.06 E-value=7.6e-10 Score=102.94 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=112.6
Q ss_pred eeeEEEeC-cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC-------Cc---c
Q 014621 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RI---I 108 (421)
Q Consensus 41 ~~ls~~~g-~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~-------~~---i 108 (421)
.++.|.|. .-+.+-|+|++++.|. -..++|.||||||||+|.|.|-- ...|.|.+.|...-+ .. .
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gs---RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YL 93 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGS---RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL 93 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCc---eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEe
Confidence 34445542 3477888999999999 88899999999999999999985 445889888864211 00 1
Q ss_pred ccccCCC-------CCCccchHHHHHHhhhccccc-----ccccc----ccccccccccccccccCceEEEeehhhhhhh
Q 014621 109 DGNFDDP-------RLTDYDTLLENIRGLKEGKAV-----QVPIY----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 109 g~vfq~p-------~l~~~~tv~enl~~l~~~~~i-----~~p~~----~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d 172 (421)
|.-+-+. .+-...++.+.|... .+... -+... .+..+..+. ....||-|..|+
T Consensus 94 GgeW~~~~~~agevplq~D~sae~mifgV-~g~dp~Rre~LI~iLDIdl~WRmHkvSD-----GqrRRVQicMGL----- 162 (291)
T KOG2355|consen 94 GGEWSKTVGIAGEVPLQGDISAEHMIFGV-GGDDPERREKLIDILDIDLRWRMHKVSD-----GQRRRVQICMGL----- 162 (291)
T ss_pred cccccccccccccccccccccHHHHHhhc-cCCChhHhhhhhhheeccceEEEeeccc-----cchhhhHHHHhc-----
Confidence 1111110 011122333333221 11100 00111 111222222 234677788888
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHH----HcCCCH------HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQ----RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~----~~G~ti------~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
.-.=.++++||+|.+||+-...+++.-++ .||.|| -+=++.|..+++-+..|++.-..+..++
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 33336899999999999987777664443 368887 4557889999999999999776655555
No 417
>PRK08233 hypothetical protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=97.80 Aligned_cols=150 Identities=19% Similarity=0.303 Sum_probs=92.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCC--ccccccCCCCCC---ccchHHHHHHhhhccccccccc
Q 014621 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDPRLT---DYDTLLENIRGLKEGKAVQVPI 140 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~--~ig~vfq~p~l~---~~~tv~enl~~l~~~~~i~~p~ 140 (421)
+.+|+|.|++|||||||++.|+..++.+..+.+|+++.... .+.-..++...+ +...+.+.+..+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 74 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIA-------- 74 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHc--------
Confidence 35999999999999999999999987667888888864211 111001111111 11111111111100
Q ss_pred cccccccccccccccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHc-CCCHHHHHHHHhceE
Q 014621 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETV 218 (421)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~-G~ti~~vi~~~~d~V 218 (421)
.....++|+++.+... +..+..+|+..+.+.+.+....|++.|+..+. +..+...+..+..++
T Consensus 75 ---------------~~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 75 ---------------KSNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ---------------CCCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 0112577888875543 56777889999999988887777776765432 224455566676777
Q ss_pred EEccCcEEeecCCcccEEEe
Q 014621 219 YPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 219 ~~m~~g~I~p~~~~aDiiI~ 238 (421)
.+.+...+.+....++++|.
T Consensus 140 ~~~y~~~~~~~~~~~~~vId 159 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLD 159 (182)
T ss_pred HHHHHHHhhcCccCCeEEEc
Confidence 77776666665567788764
No 418
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.1e-09 Score=123.02 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=57.2
Q ss_pred CceEEEeehhhhhhhcc---CCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEc----
Q 014621 158 SSRIVIIEGIYALSEKL---RPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPM---- 221 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l---~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m---- 221 (421)
.||+.|++++ .. .|.+.++|||+++||+....+++ +++.++|.|+ ++++. .||+++.|
T Consensus 834 ~QRl~LA~aL-----~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~ 907 (924)
T TIGR00630 834 AQRIKLAKEL-----SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEG 907 (924)
T ss_pred HHHHHHHHHH-----hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCc
Confidence 4888888888 43 58999999999999999776554 6666678887 66664 69999999
Q ss_pred --cCcEEeecCCcccE
Q 014621 222 --YKAFIEPDLQTAHI 235 (421)
Q Consensus 222 --~~g~I~p~~~~aDi 235 (421)
.+|++...+...++
T Consensus 908 G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 908 GDGGGTIVASGTPEEV 923 (924)
T ss_pred cCCCCEEEEeCCHHHh
Confidence 79999887766554
No 419
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.97 E-value=9.1e-10 Score=129.29 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=59.7
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEcc------
Q 014621 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMY------ 222 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~------ 222 (421)
.||+.|++++.. ....|.++++|||+++||+...++++ ++++++|.|+ ++++ .+||+++.|.
T Consensus 815 ~QRV~LAraL~~--~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~ 891 (1809)
T PRK00635 815 IQRLKLAYELLA--PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNL 891 (1809)
T ss_pred HHHHHHHHHHhh--cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCC
Confidence 489999998821 11589999999999999998776554 6666678887 6777 7999999995
Q ss_pred CcEEeecCCcccEE
Q 014621 223 KAFIEPDLQTAHIK 236 (421)
Q Consensus 223 ~g~I~p~~~~aDii 236 (421)
.|++...+...++.
T Consensus 892 ~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 892 GGYLLASCSPEELI 905 (1809)
T ss_pred CCEEEEeCCHHHHH
Confidence 78888777776654
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.96 E-value=4.6e-10 Score=104.89 Aligned_cols=56 Identities=11% Similarity=-0.057 Sum_probs=43.6
Q ss_pred cCCccceEEEEecCccHHHHHH----HHHHHHHcCCCH-----HHHHHHHhceEEEccCcEEeec
Q 014621 174 LRPLIDLRVSVTGGVHFDLVKR----VFRDIQRVGQEP-----EEIIHQISETVYPMYKAFIEPD 229 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~rr----Ilrdl~~~G~ti-----~~vi~~~~d~V~~m~~g~I~p~ 229 (421)
..|.+.++|||++++|+..... +++.+.+.|.++ ...+..+||++..+.+|.+..+
T Consensus 107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 4788999999999999986544 446666667766 4456689999999999988654
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=114.03 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=119.2
Q ss_pred eeeeEEEeC--cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCCCccccccCCCC
Q 014621 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPR 116 (421)
Q Consensus 40 ~~~ls~~~g--~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-~~G~I~~Dg~~~~~~~ig~vfq~p~ 116 (421)
.+++++.-. +..+++++||++++|. -+.|.||||||||+|+|.++|+-| ..|.+..-.... .+.+-|++|-|.
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-~~~lfflPQrPY 511 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-PKDLFFLPQRPY 511 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-CCceEEecCCCC
Confidence 455665532 4678899999999999 999999999999999999999986 678887532211 134678889886
Q ss_pred CCccchHHHHHHhhhcccccccc-c--------cccc----ccccccc-c----------cccccCceEEEeehhhhhhh
Q 014621 117 LTDYDTLLENIRGLKEGKAVQVP-I--------YDFK----SSSRIGY-R----------TLEVPSSRIVIIEGIYALSE 172 (421)
Q Consensus 117 l~~~~tv~enl~~l~~~~~i~~p-~--------~~~~----~~~~~~~-~----------~~~~~~qrVlIaegl~~L~d 172 (421)
.-. -|+++.+-++......... . .+.. ...+.++ . ....+.||+..||-+
T Consensus 512 mt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf----- 585 (659)
T KOG0060|consen 512 MTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF----- 585 (659)
T ss_pred ccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH-----
Confidence 544 3777777665321110000 0 0000 0011111 0 011134898888888
Q ss_pred ccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH-----HHHHHHHhceEEEccC
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-----EEIIHQISETVYPMYK 223 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti-----~~vi~~~~d~V~~m~~ 223 (421)
-..|.+-++||.|++++......+-|..++.|.|. ...+.++-|.+.-|..
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 77899999999999999999888888888889887 5556677777776643
No 422
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.92 E-value=1.2e-09 Score=102.14 Aligned_cols=157 Identities=13% Similarity=-0.019 Sum_probs=84.2
Q ss_pred EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee--------cCCCccccccCCCCCCccc
Q 014621 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN--------DSSRIIDGNFDDPRLTDYD 121 (421)
Q Consensus 51 ~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~--------~~~~~ig~vfq~p~l~~~~ 121 (421)
..++++++.+.+| +.+|+|+||||||||+.+|...+ +... ....+.. .....+...|++...++..
T Consensus 10 r~~~~~~l~f~~g----l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~ 84 (198)
T cd03276 10 MCHRHLQIEFGPR----VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANP 84 (198)
T ss_pred cceeeeEEecCCC----eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCc
Confidence 3445666676664 78999999999999999998765 3211 1111110 0123456677765554411
Q ss_pred h--H-HHHHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHH
Q 014621 122 T--L-LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (421)
Q Consensus 122 t--v-~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlr 198 (421)
. . .+.+..+... ....+......++ ...+++.|+.++. +....+|.+.++|||++++|+.....+.+
T Consensus 85 ~~~~~~~~~~~~l~~----~~~~~~~~~~lS~-----G~k~r~~ia~al~-~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 85 LCVLSQDMARSFLTS----NKAAVRDVKTLSG-----GERSFSTVCLLLS-LWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred CCHHHHHHHHHHhcc----ccccCCcccccCh-----hHHHHHHHHHHHH-HhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 0 0 1122121111 0001111112222 2246777777661 11136899999999999999987665553
Q ss_pred ---HHHHc--C-CCH------HHHHHHHhceEEEccC
Q 014621 199 ---DIQRV--G-QEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 199 ---dl~~~--G-~ti------~~vi~~~~d~V~~m~~ 223 (421)
++..+ + .++ ++.+.++ |+|.+|..
T Consensus 155 ~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 155 LLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred HHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 33222 2 244 4445554 67766654
No 423
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.89 E-value=1e-09 Score=105.85 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=44.3
Q ss_pred CceEEEeehhhhhhhcc----CCccceEEEEecCccHHHHHHH---HHHHHHcCCCH------HHHHHHHhceEEEccC
Q 014621 158 SSRIVIIEGIYALSEKL----RPLIDLRVSVTGGVHFDLVKRV---FRDIQRVGQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l----~p~ldL~DEpts~LD~~~~rrI---lrdl~~~G~ti------~~vi~~~~d~V~~m~~ 223 (421)
.+++.|++++ .. .|.+.++|||++++|+.....+ ++++.++|.++ .+. ..+||++++|+.
T Consensus 161 k~rl~la~al-----~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d~i~~~~~ 233 (247)
T cd03275 161 KTMAALALLF-----AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKADALVGVYR 233 (247)
T ss_pred HHHHHHHHHH-----HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCCeEEEEEe
Confidence 3788888887 44 3789999999999999866554 45555457666 444 467999988865
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8e-10 Score=112.23 Aligned_cols=146 Identities=12% Similarity=0.164 Sum_probs=96.4
Q ss_pred eeeeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCC-
Q 014621 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR- 116 (421)
Q Consensus 40 ~~~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~- 116 (421)
+.+++|.| |..++++.++|-|.-.. -|+|+||||.|||||++.|.|-+ |+.|+..-+. +-+||+.-||.+
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh----rL~iG~FdQh~~E 661 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH----RLRIGWFDQHANE 661 (807)
T ss_pred cccccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----eeeeechhhhhHH
Confidence 45788998 77899999999999999 99999999999999999999999 9988776432 224666656542
Q ss_pred -CCccchHHHHHHhhhcc--cccc--ccccccc-------cccccccccccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 117 -LTDYDTLLENIRGLKEG--KAVQ--VPIYDFK-------SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 117 -l~~~~tv~enl~~l~~~--~~i~--~p~~~~~-------~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
+....|..+.+.....- .... .-.+.+. ..+.+|+ ..+||++++-. .-.|.++++|||
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGG-----QKaRValaeLa-----l~~PDvlILDEP 731 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGG-----QKARVALAELA-----LGGPDVLILDEP 731 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCc-----chHHHHHHHHh-----cCCCCEEEecCC
Confidence 23334444444322100 0000 0001111 1112222 23566655544 667999999999
Q ss_pred ecCccHHHHHHHHHHHHH
Q 014621 185 TGGVHFDLVKRVFRDIQR 202 (421)
Q Consensus 185 ts~LD~~~~rrIlrdl~~ 202 (421)
|..||...+..+-..+++
T Consensus 732 TNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINE 749 (807)
T ss_pred CCCcchhhHHHHHHHHHh
Confidence 999999988776665554
No 425
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.86 E-value=3.6e-09 Score=107.09 Aligned_cols=154 Identities=22% Similarity=0.176 Sum_probs=98.7
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC---------CCeeEEEECCeecCCCccccccCCC-CC
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDSSRIIDGNFDDP-RL 117 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll---------p~~G~I~~Dg~~~~~~~ig~vfq~p-~l 117 (421)
+...+++|+||.+++|+ +++|+|+|||||||++++|+|.. |++|.|.+--... -.+++... ..
T Consensus 394 ieryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~----~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV----SALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch----hhccCcccccc
Confidence 45689999999999999 99999999999999999999973 4667666432111 12233211 12
Q ss_pred CccchHHHHHHhhhcc--ccc---------cccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEec
Q 014621 118 TDYDTLLENIRGLKEG--KAV---------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (421)
Q Consensus 118 ~~~~tv~enl~~l~~~--~~i---------~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts 186 (421)
|...++.+++..-... ..+ ..-.|.....+.+ .....|+-||..+ +-+|.+.+.||..+
T Consensus 467 f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELS-----tGQKeR~KLAkll-----aerpn~~~iDEF~A 536 (593)
T COG2401 467 FGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELS-----TGQKERAKLAKLL-----AERPNVLLIDEFAA 536 (593)
T ss_pred cCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcC-----cchHHHHHHHHHH-----hcCCCcEEhhhhhh
Confidence 3455666666431100 000 0001111111222 2233556677777 89999999999999
Q ss_pred CccHHHHHHHHHHHHH----cCCCH------HHHHHHH-hceE
Q 014621 187 GVHFDLVKRVFRDIQR----VGQEP------EEIIHQI-SETV 218 (421)
Q Consensus 187 ~LD~~~~rrIlrdl~~----~G~ti------~~vi~~~-~d~V 218 (421)
-||+.++.++.|++.+ .|.|+ .++...+ -|++
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 9999999999988764 26665 6666666 4443
No 426
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.5e-09 Score=110.61 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=121.5
Q ss_pred eeeEEEeCcE--EEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCC
Q 014621 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (421)
Q Consensus 41 ~~ls~~~g~~--~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l 117 (421)
..++|+|..- ..+.++++.++... -++++|+||+||||+++.+.+-+ |..|.+...+ +.+++|.+||---
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~s---Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDS---RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVD 438 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhh---hhheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhh
Confidence 3566777532 68999999999999 99999999999999999999988 8999888654 5678888887532
Q ss_pred Cccc--hHHHHHHhhhccccccc------------cccccccccccccccccccCceEEEeehhhhhhhccCCccceEEE
Q 014621 118 TDYD--TLLENIRGLKEGKAVQV------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 118 ~~~~--tv~enl~~l~~~~~i~~------------p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DE 183 (421)
+-.. +..+..+....|..-+. +.........+|++ ..||++|... ..+|.++++||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQ-----KsrvafA~~~-----~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQ-----KSRVAFAACT-----WNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcc-----hhHHHHHHHh-----cCCCcEEEecC
Confidence 2111 11222222222221000 00011111122222 3567777666 88999999999
Q ss_pred EecCccHHHHHHHHHHHHHc-CCCH-----HHHHHHHhceEEEccCcEEee
Q 014621 184 VTGGVHFDLVKRVFRDIQRV-GQEP-----EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 184 pts~LD~~~~rrIlrdl~~~-G~ti-----~~vi~~~~d~V~~m~~g~I~p 228 (421)
||.-||...+..+-+.++.- |--+ .+++...|+.+|+.++|.+.+
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999888874 4333 899999999999999999977
No 427
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.79 E-value=2.6e-09 Score=110.97 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=50.6
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecCC------CccccccCCCC
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSS------RIIDGNFDDPR 116 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~I~~Dg~~~~~------~~ig~vfq~p~ 116 (421)
..||++||+++++|+ +++|+||||||||||++ +++. |++| .|.+||.+... ....++||+++
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn 88 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGFN 88 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhhh
Confidence 458999999999999 99999999999999999 5666 7777 79999997642 12346777653
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.78 E-value=3.3e-09 Score=99.16 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=43.9
Q ss_pred ccCCccceEEEEecCccHHHHH----HHHHHHHHcCCCH-----HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 173 KLRPLIDLRVSVTGGVHFDLVK----RVFRDIQRVGQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 173 ~l~p~ldL~DEpts~LD~~~~r----rIlrdl~~~G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
...|.+.++|||++++|+.... .+++.+.++|.++ ...+.+.++++..+..+++....+..++
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 4578999999999999997544 3456666667666 2333446778888888888777654333
No 429
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.70 E-value=2.2e-08 Score=95.01 Aligned_cols=148 Identities=10% Similarity=0.072 Sum_probs=89.3
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecC--CCccccccCCCCCCccchHHH
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLE 125 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~--~~~ig~vfq~p~l~~~~tv~e 125 (421)
..+.+++++...+ + +++|.|||||||||++|.++++. ...| .... +..+++..+ .+...++.+
T Consensus 18 ~~v~n~~~l~~~~-~---~~~l~Gpn~sGKstllr~i~~~~~l~~~g------~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-Q---ILLITGPNMAGKSTYLRQVALIALLAQIG------SFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-e---EEEEECCCCCChHHHHHHHHHHHHHhccC------Ceeccccceecceee---EeccCCchh
Confidence 4577888888776 7 99999999999999999998764 2222 2222 233444432 344555555
Q ss_pred HHHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEE---ecCccHHH-HHHHHHHHH
Q 014621 126 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDL-VKRVFRDIQ 201 (421)
Q Consensus 126 nl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp---ts~LD~~~-~rrIlrdl~ 201 (421)
++...... + ..+... +.. ++.....+.+.++||| |+++|... .+.+++.+.
T Consensus 85 ~ls~g~s~-------f---~~e~~~------------l~~---~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~ 139 (216)
T cd03284 85 DLAGGRST-------F---MVEMVE------------TAN---ILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLH 139 (216)
T ss_pred hhccCcch-------H---HHHHHH------------HHH---HHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHH
Confidence 55432100 0 000000 000 1111457889999999 99999865 466777777
Q ss_pred Hc-CCCH-----HHHHHHHhceEEEccCcEEeecCCcccE
Q 014621 202 RV-GQEP-----EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (421)
Q Consensus 202 ~~-G~ti-----~~vi~~~~d~V~~m~~g~I~p~~~~aDi 235 (421)
+. +.++ ...+..+++++..+.++++.......++
T Consensus 140 ~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 140 EKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 76 6665 3345667787766677777654444444
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.67 E-value=3.4e-08 Score=96.79 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS 104 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~ 104 (421)
.++|+||||||||||+++|++++ |++|.+.++|.++.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 78999999999999999999999 89999999998753
No 431
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.64 E-value=1.9e-08 Score=102.93 Aligned_cols=209 Identities=15% Similarity=0.161 Sum_probs=115.7
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHH---HHHHHHHHHHcCCCH------HHHHHHHhceEEEccCcEEee
Q 014621 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL---VKRVFRDIQRVGQEP------EEIIHQISETVYPMYKAFIEP 228 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~---~rrIlrdl~~~G~ti------~~vi~~~~d~V~~m~~g~I~p 228 (421)
.||++|+.++ .-...+.+.|||++-||.+. ..+++|++.+.++++ +.++..++|.|-++|..
T Consensus 219 LQr~aIaa~l-----~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~---- 289 (591)
T COG1245 219 LQRVAIAAAL-----LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE---- 289 (591)
T ss_pred HHHHHHHHHH-----hccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC----
Confidence 3899999998 88889999999999999984 567889998877777 78888899988887652
Q ss_pred cCCcccEEEeCCCCCcccccCCeeeccCCCcchHHHHHHHhc----ccccccccccceeecCCCCCCch--hhhhhhhcc
Q 014621 229 DLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS----KEHTETTEETYDIYLLPPGEDPD--ACQSYLRMR 302 (421)
Q Consensus 229 ~~~~aDiiI~~~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~----~~~~~~~~~~~~i~~~p~~~~~~--~~~~~l~~~ 302 (421)
-..|+.+..| .-++..|...|. ..+..--...+..-..||..... .+-+|-...
T Consensus 290 ------------pg~YGvvs~p--------~svr~gIN~yL~Gyl~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~ 349 (591)
T COG1245 290 ------------PGVYGVVSKP--------KSVRVGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLK 349 (591)
T ss_pred ------------CccceEeccc--------hHHHHHHHHHHhccCchhcccccccceeeeccCcccccccceeeecchhe
Confidence 1234445555 223444544443 32222111122222233332221 223333333
Q ss_pred cCCceEEEEEe-eecCCCCeEeeeeeeeceeeeEecccccccceeeeeeecccceeecCcEEEEeehhcccCcceEEEee
Q 014621 303 NRDGKYNLMFE-EWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVLF 381 (421)
Q Consensus 303 ~~~~~~~l~~~-~~~~~~p~i~~~~~~f~v~~~il~g~~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (421)
.+-+-++|..+ |++.++-+|- .. +-|=+|--.-... .|-.|+-...-..+=+|+.|-.+|..- -+|
T Consensus 350 k~~g~F~L~V~~G~i~~gEvig-il-----GpNgiGKTTFvk~-LAG~ikPdeg~~~~~~vSyKPQyI~~~------~~g 416 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIG-IL-----GPNGIGKTTFVKL-LAGVIKPDEGSEEDLKVSYKPQYISPD------YDG 416 (591)
T ss_pred eecCceEEEecCCeeecceEEE-EE-----CCCCcchHHHHHH-HhccccCCCCCCccceEeecceeecCC------CCC
Confidence 33456777773 4444444332 11 1222111111122 222334332224455666666666543 355
Q ss_pred cchhhhh---hcCCCCceEEEEeccccccc
Q 014621 382 HLIQSFA---HLSLPTPFFFCFHCIPLNVF 408 (421)
Q Consensus 382 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 408 (421)
+-+.-.. ..+..+.||..--|-|||.-
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 5554433 23378899998888888863
No 432
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.63 E-value=6.6e-08 Score=91.53 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.3
Q ss_pred eeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014621 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 54 ~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++.+...+| +..|+|+||||||||+.+|...+
T Consensus 15 ~~~~i~~~~g----~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 15 DETEFRPGPS----LNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred ceeEEecCCC----eEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555443 78999999999999999998876
No 433
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.60 E-value=1.1e-08 Score=106.23 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=99.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCC-CeeEEEECCeecCCCccccccCCCCCCccchHHHH
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp-~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~en 126 (421)
....++..++|.+++|- -+.|+||||||||+|.|.|.|+-| ..|.+.+ ..+..+-|++|-|..- ..|++|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~---hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----P~~~~mFYIPQRPYms-~gtlRDQ 564 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGM---HLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----PRPNNIFYIPQRPYMS-GGTLRDQ 564 (728)
T ss_pred CcceeecceeEEecCCc---eEEEECCCCccHHHHHHHHhccCcccCCeeec----CCCcceEeccCCCccC-cCcccce
Confidence 34568899999999999 999999999999999999999986 3455543 2344588899988643 4455555
Q ss_pred HHhhhcccccc---ccc------c---ccc-cccccc-cc--------cccccCceEEEeehhhhhhhccCCccceEEEE
Q 014621 127 IRGLKEGKAVQ---VPI------Y---DFK-SSSRIG-YR--------TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV 184 (421)
Q Consensus 127 l~~l~~~~~i~---~p~------~---~~~-~~~~~~-~~--------~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp 184 (421)
+-.+....... .+. . +.. ..++.+ .. ......||+.+||-+ -.+|..-++||.
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~-----yHrPkyalLDEc 639 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF-----YHRPKYALLDEC 639 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-----hcCcchhhhhhh
Confidence 54331100000 000 0 000 001111 11 111235899999988 789999999999
Q ss_pred ecCccHHHHHHHHHHHHHcCCCH
Q 014621 185 TGGVHFDLVKRVFRDIQRVGQEP 207 (421)
Q Consensus 185 ts~LD~~~~rrIlrdl~~~G~ti 207 (421)
|++..+....++....+..|.+.
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~l 662 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISL 662 (728)
T ss_pred hcccccchHHHHHHHHHhcCceE
Confidence 99999988888887777778776
No 434
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.59 E-value=3.6e-08 Score=93.09 Aligned_cols=145 Identities=26% Similarity=0.331 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC------------CeeEEEECCeecCCCccccccCC----------CCCCccchHHH
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMP------------SIAVITMDNYNDSSRIIDGNFDD----------PRLTDYDTLLE 125 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp------------~~G~I~~Dg~~~~~~~ig~vfq~----------p~l~~~~tv~e 125 (421)
++|++|+.|+||||++..+...-| -+-.|.|||++++++.... |++ |..||......
T Consensus 121 l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~-f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 121 LTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDL-FKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred eeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHh-hcChHHHHhhcCCCcccCHHHHHH
Confidence 999999999999999999988543 1245899999987654332 222 34566655555
Q ss_pred HHHhhhc--cccccccccccccccccccccccccCceEEEeehhhhhhhcc-----CCccceEEEEecCccHHHHHHHHH
Q 014621 126 NIRGLKE--GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL-----RPLIDLRVSVTGGVHFDLVKRVFR 198 (421)
Q Consensus 126 nl~~l~~--~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l-----~p~ldL~DEpts~LD~~~~rrIlr 198 (421)
.+..++. ...+..|.+++..++.+......-...|++|+||.|+|++.. -..++.+.+.+.+.+... .|+-+
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~-~RVa~ 278 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAE-ERVAK 278 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHH-HHHHH
Confidence 5555542 345677888888888877665555668999999999999632 345666666665544433 34444
Q ss_pred HHHHcC--CCHHHHHHHH
Q 014621 199 DIQRVG--QEPEEIIHQI 214 (421)
Q Consensus 199 dl~~~G--~ti~~vi~~~ 214 (421)
+....| .|+.+...++
T Consensus 279 RHl~sGl~~t~~ea~er~ 296 (323)
T KOG2702|consen 279 RHLQSGLVTTIAEARERF 296 (323)
T ss_pred HhhcccccCCHHHHHhhc
Confidence 444456 5655544443
No 435
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.53 E-value=6.2e-08 Score=91.18 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=36.0
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll 90 (421)
+...+.+++++...+|+ +++|.|||||||||++++++++.
T Consensus 14 ~~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 14 KKNFIPNDIYLTRGSSR---FHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CCcEEEeeeEEeeCCCc---EEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999 99999999999999999998874
No 436
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.50 E-value=8.4e-08 Score=88.35 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=42.9
Q ss_pred CceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccC
Q 014621 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYK 223 (421)
Q Consensus 158 ~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~ 223 (421)
.+++.+++++.. .....|.+.++|||++++|+.....+. +++.+.|.++ .+.+ ..+|+++.++.
T Consensus 100 ~~r~~Laral~~-~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 100 KSLSALALIFAL-QEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHH-hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 366777777611 112478999999999999998766544 5554456665 4444 46888887764
No 437
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.49 E-value=7.2e-08 Score=91.87 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=83.2
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCeecCCCccccccCCCCCCccchHHHH
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~en 126 (421)
...+.+++++...+++ +++|.|||||||||+++.++-.. ...|. +++.+...+. ..+.
T Consensus 16 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~~la~~g~--------------~vpa~~~~~~---~~~~ 75 (222)
T cd03285 16 VAFIPNDVTLTRGKSR---FLIITGPNMGGKSTYIRQIGVIVLMAQIGC--------------FVPCDSADIP---IVDC 75 (222)
T ss_pred CCeEEeeEEEeecCCe---EEEEECCCCCChHHHHHHHHHHHHHHHhCC--------------CcCcccEEEe---ccce
Confidence 4467889999999999 99999999999999999987542 11220 1221110000 0000
Q ss_pred HHhhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEE---ecCccHHHHHH-HHHHHHH
Q 014621 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSV---TGGVHFDLVKR-VFRDIQR 202 (421)
Q Consensus 127 l~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEp---ts~LD~~~~rr-Ilrdl~~ 202 (421)
+... .. ..+......+ ....++.-++..+-+ ...|.+.++||| |+++|...... +++.+.+
T Consensus 76 il~~-----~~--l~d~~~~~lS-----~~~~e~~~~a~il~~---~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~ 140 (222)
T cd03285 76 ILAR-----VG--ASDSQLKGVS-----TFMAEMLETAAILKS---ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT 140 (222)
T ss_pred eEee-----ec--cccchhcCcC-----hHHHHHHHHHHHHHh---CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh
Confidence 0000 00 0000000000 111122222222211 246889999999 99999986554 3466665
Q ss_pred c-CCCH-----HHHHHHHhceEEEccCcEEeecC
Q 014621 203 V-GQEP-----EEIIHQISETVYPMYKAFIEPDL 230 (421)
Q Consensus 203 ~-G~ti-----~~vi~~~~d~V~~m~~g~I~p~~ 230 (421)
+ |.++ ...+..+||++..+.+|++....
T Consensus 141 ~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 141 QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 3 6665 55567899999888888885443
No 438
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=5.7e-07 Score=88.29 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=43.4
Q ss_pred ceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH--cCCCH------HHHHHHHhceEEEccCc
Q 014621 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEP------EEIIHQISETVYPMYKA 224 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~--~G~ti------~~vi~~~~d~V~~m~~g 224 (421)
+|+.++.++.... ...|.+.++|||++++|+.....+.+.+.+ ++.++ +.+ ..+||+++.+.++
T Consensus 177 ~r~~la~~~~~~~-~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~-~~~~d~~~~l~~~ 248 (276)
T cd03241 177 SRLMLALKAILAR-KDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV-AAMADNHFLVEKE 248 (276)
T ss_pred HHHHHHHHHHHhc-CCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH-HHhcCcEEEEEEe
Confidence 6666665541100 128999999999999999987776644433 25555 443 4689988888765
No 439
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.39 E-value=3.9e-07 Score=95.05 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC---------------CCcccccc
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------SRIIDGNF 112 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~---------------~~~ig~vf 112 (421)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|+++. |+.|.|.+.|..-. ++.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq---~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQ---RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCc---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 9999999 99999999999999999999998 89999988654321 11223332
Q ss_pred --CCCCCCcc------chHHHHHHhhhccccccccccccccccccccccccccCceE-EEeehhhhhhhccCCccceEEE
Q 014621 113 --DDPRLTDY------DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRI-VIIEGIYALSEKLRPLIDLRVS 183 (421)
Q Consensus 113 --q~p~l~~~------~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrV-lIaegl~~L~d~l~p~ldL~DE 183 (421)
++|...-. .++.|.++ ....+| ++++.+.-+..+.+.--+...|
T Consensus 221 ~~~~~~~~r~~~~~~a~~iAEyfr---------------------------~~g~~Vll~~Dsltr~A~A~rEisl~~ge 273 (438)
T PRK07721 221 TSDQPALMRIKGAYTATAIAEYFR---------------------------DQGLNVMLMMDSVTRVAMAQREIGLAVGE 273 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---------------------------HCCCcEEEEEeChHHHHHHHHHHHHhcCC
Confidence 11111000 00111110 011223 3345554444444444444445
Q ss_pred E--ecCccHHHHH---HHHHHHHH--cCC-----CH----HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCcc
Q 014621 184 V--TGGVHFDLVK---RVFRDIQR--VGQ-----EP----EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFT 245 (421)
Q Consensus 184 p--ts~LD~~~~r---rIlrdl~~--~G~-----ti----~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~ 245 (421)
| +.++|+.... ++++++.. +|. |+ .+.-+.+||++..+.+|+|.-++..++-=+.-..||..
T Consensus 274 ~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~ 351 (438)
T PRK07721 274 PPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLK 351 (438)
T ss_pred CCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcc
Confidence 3 6788888654 45555542 453 33 22235899999999999999988877664433333333
No 440
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=98.38 E-value=1.4e-06 Score=80.06 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=91.7
Q ss_pred ccceeecCCCCCCchhhhhhhhcccCCceEEEEEeeecCCCCeEeeeeeeecee--eeEecccccccceeeeeeecccce
Q 014621 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGGLMALGYTIATILKRSSHI 356 (421)
Q Consensus 279 ~~~~i~~~p~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~p~i~~~~~~f~v~--~~il~g~~~~g~~~~~~~~r~~~~ 356 (421)
...|+|..+|+........|+|.|..++.+.++|.|+..+..+.+++..+++|+ -.....|.+|||..++.+...-.+
T Consensus 32 ~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~ 111 (174)
T TIGR00318 32 FQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKRRI 111 (174)
T ss_pred ceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEEEE
Confidence 356999999998887778899999988899999999988888888888888884 344455688999999999999999
Q ss_pred eecCcEEEEeehhcccCcceEEEeecch
Q 014621 357 FYDDRVCVKTDWLEQLNRKYVQVLFHLI 384 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
|.-|.+.|++|++++|+ +|+.|.|...
T Consensus 112 ~~l~~~~i~lD~v~~lG-~FvEIE~~~~ 138 (174)
T TIGR00318 112 YQTNELNVSIDDVEGLG-FFLEIEKIIN 138 (174)
T ss_pred EEECCEEEEEEccCCCc-cEEEEEEecC
Confidence 99999999999999997 9999999754
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.34 E-value=3.5e-07 Score=82.64 Aligned_cols=130 Identities=11% Similarity=0.059 Sum_probs=70.4
Q ss_pred eeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCcccc-ccCCCCCCccchHHHHHHhhhccc
Q 014621 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDG-NFDDPRLTDYDTLLENIRGLKEGK 134 (421)
Q Consensus 57 sl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~-vfq~p~l~~~~tv~enl~~l~~~~ 134 (421)
+..+.++. +..|+|||||||||+++++...+ ...+.+...+. .+.++ ++... ... +
T Consensus 15 ~i~~~~~~---~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~----~~~g~~~~~~~-----~~~---i------- 72 (162)
T cd03227 15 DVTFGEGS---LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG----VKAGCIVAAVS-----AEL---I------- 72 (162)
T ss_pred EEecCCCC---EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc----ccCCCcceeeE-----EEE---e-------
Confidence 33344556 99999999999999999988776 33332222100 01110 00000 000 0
Q ss_pred cccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH----
Q 014621 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP---- 207 (421)
Q Consensus 135 ~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti---- 207 (421)
+.....+++ ..+++.+++++.. .....|.+.++|||++++|+.....+. +++..+|.++
T Consensus 73 --------~~~~~lS~G-----~~~~~~la~~L~~-~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~T 138 (162)
T cd03227 73 --------FTRLQLSGG-----EKELSALALILAL-ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138 (162)
T ss_pred --------hheeecccc-----HHHHHHHHHHHHh-cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 000111221 2345555665511 011278999999999999998766554 3333335544
Q ss_pred --HHHHHHHhceEEEccC
Q 014621 208 --EEIIHQISETVYPMYK 223 (421)
Q Consensus 208 --~~vi~~~~d~V~~m~~ 223 (421)
.+.. ..+|+++.|..
T Consensus 139 H~~~~~-~~~d~~~~l~~ 155 (162)
T cd03227 139 HLPELA-ELADKLIHIKK 155 (162)
T ss_pred CCHHHH-HhhhhEEEEEE
Confidence 4443 45788877754
No 442
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.34 E-value=7.5e-07 Score=82.68 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=92.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCCCcccc------ccCCCCCCccchHHHHHHhhhcccc-cc
Q 014621 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEGKA-VQ 137 (421)
Q Consensus 65 ~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~~~ig~------vfq~p~l~~~~tv~enl~~l~~~~~-i~ 137 (421)
+.+||||.|.+-||||||++.+...+|.+..|+.|+++.+...+.. .|+-+.+++...+.+.++....+.. ..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 3679999999999999999999999998889999999877544322 2333444555555555555433211 11
Q ss_pred ccc---cccccccccccc-cccccCceEEEeehhhhhh-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHH
Q 014621 138 VPI---YDFKSSSRIGYR-TLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (421)
Q Consensus 138 ~p~---~~~~~~~~~~~~-~~~~~~qrVlIaegl~~L~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~ 212 (421)
.+. .+.........+ ......+.++|++|.++.. +.+...++.....+.+.+.+..|| -++.|.-..+- -
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr----~~Rt~y~p~~t-g 157 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRR----EARTYYPPDDT-G 157 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhh----cccccCCCCCC-c
Confidence 111 011000000000 1233457899999997765 555566777777776544433222 12223222111 2
Q ss_pred HHhceEEEccCcEEeecCCc
Q 014621 213 QISETVYPMYKAFIEPDLQT 232 (421)
Q Consensus 213 ~~~d~V~~m~~g~I~p~~~~ 232 (421)
.+...|+|+|..+.+..+..
T Consensus 158 yfd~~~~P~Y~~~~~~~~d~ 177 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEARDR 177 (225)
T ss_pred cccCccchHHHHHHHHHHhh
Confidence 22333677766655544443
No 443
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.32 E-value=1.2e-06 Score=92.78 Aligned_cols=185 Identities=19% Similarity=0.208 Sum_probs=99.0
Q ss_pred eEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEEC--CeecCC----CccccccCCCC
Q 014621 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD--NYNDSS----RIIDGNFDDPR 116 (421)
Q Consensus 43 ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~D--g~~~~~----~~ig~vfq~p~ 116 (421)
+....|...+++|+.+.+ ++. +|+|.|||||||||+++.|+..+ |...+| .++-.- ..-++.++++.
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l---~~~~~d~g~~YR~~a~~~l~~~~~~~~~~ 337 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL---GLLYLDTGAMYRAVTWLVLQEGIDPQDEE 337 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc---CCeEecCCceehHHHHHHHHcCcCCcCHH
Confidence 455679999999999977 677 99999999999999999999877 233343 222110 01122233321
Q ss_pred CCccchHHHHHHhhh-----cccccccccccccccccccc---cc-----------------ccccCceEEEeehhhhhh
Q 014621 117 LTDYDTLLENIRGLK-----EGKAVQVPIYDFKSSSRIGY---RT-----------------LEVPSSRIVIIEGIYALS 171 (421)
Q Consensus 117 l~~~~tv~enl~~l~-----~~~~i~~p~~~~~~~~~~~~---~~-----------------~~~~~qrVlIaegl~~L~ 171 (421)
.+ ..+.+++.... .+..+..+.++....-+... .. ..+....=+|+||--+-.
T Consensus 338 ~l--~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt 415 (512)
T PRK13477 338 AL--AELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT 415 (512)
T ss_pred HH--HHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee
Confidence 11 01111111111 00112222222222111110 00 000001124566642111
Q ss_pred hccCCccceEEEEecCccHHHHHHHHHHHHHcCC---CHHHHHHHHhceEEEccCcEEeecCCc-ccEEEe
Q 014621 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKII 238 (421)
Q Consensus 172 d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~---ti~~vi~~~~d~V~~m~~g~I~p~~~~-aDiiI~ 238 (421)
...|.-+++.|.+++.+.+..|+. +++.++|. +..++...+..|...-.+..+.|-... ++++|.
T Consensus 416 -vV~P~AdlKIfL~As~evRa~RR~-~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~ID 484 (512)
T PRK13477 416 -HVFPDAELKIFLTASVEERARRRA-LDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELI 484 (512)
T ss_pred -EEcCCCCEEEEEECCHHHHHHHHH-hhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEE
Confidence 445788999999999887765554 44445554 356666667666655556667676665 456665
No 444
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.9e-07 Score=95.28 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=42.8
Q ss_pred eeeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014621 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 40 ~~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
.++++.+-.++.++.+.||.|-.|. -+|++||||-|||||++.|+..
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred eeeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhh
Confidence 5677787778889999999999999 9999999999999999999875
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.29 E-value=9.6e-07 Score=81.58 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=50.9
Q ss_pred eeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC----CCccccccCCC--CCCccchHHHHHH
Q 014621 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDP--RLTDYDTLLENIR 128 (421)
Q Consensus 56 Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~----~~~ig~vfq~p--~l~~~~tv~enl~ 128 (421)
+.+.+++|+ .++|+|+||||||||+++|++++ |+.|.+.+++.... +..+++.++.. ......++.+.+.
T Consensus 18 l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 18 LWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 345578899 99999999999999999999999 78899998875321 22344444332 2344456666665
Q ss_pred hh
Q 014621 129 GL 130 (421)
Q Consensus 129 ~l 130 (421)
..
T Consensus 95 ~~ 96 (186)
T cd01130 95 SA 96 (186)
T ss_pred HH
Confidence 43
No 446
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=1.5e-06 Score=85.09 Aligned_cols=68 Identities=6% Similarity=-0.021 Sum_probs=44.3
Q ss_pred ceEEEeehhhhh---h-hccCCccceEEEEecCccHHHHHHHHHHHHHcCCCH-----HHHHHHHh---ceEEEccCcEE
Q 014621 159 SRIVIIEGIYAL---S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP-----EEIIHQIS---ETVYPMYKAFI 226 (421)
Q Consensus 159 qrVlIaegl~~L---~-d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti-----~~vi~~~~---d~V~~m~~g~I 226 (421)
+++.+++++... . -..+|.+.++|||++++|+....++++.+.+.+.++ ...+..+| .+++.+.+|.+
T Consensus 190 ~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 190 RTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 556666654211 0 135789999999999999999888887776544333 33344455 45666666654
No 447
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=2.1e-06 Score=89.30 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=60.9
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe---ec-------------CCCccccc
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---ND-------------SSRIIDGN 111 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~---~~-------------~~~~ig~v 111 (421)
+..+++++ +.+.+|+ .+||+|+||||||||+++|+++. ++.+.+-..|+ +. .+..+++.
T Consensus 142 Gi~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~ 217 (434)
T PRK07196 142 GVNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAA 217 (434)
T ss_pred ceeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEe
Confidence 36799999 9999999 99999999999999999999998 77644443333 11 12347788
Q ss_pred cCCCCCCccchHHHHHHhh
Q 014621 112 FDDPRLTDYDTLLENIRGL 130 (421)
Q Consensus 112 fq~p~l~~~~tv~enl~~l 130 (421)
+++...+...++.++....
T Consensus 218 ~~d~s~~~rl~a~e~a~~i 236 (434)
T PRK07196 218 PADESPLMRIKATELCHAI 236 (434)
T ss_pred cCCCChhhhHHHHHHHHHH
Confidence 8988888888887777553
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.20 E-value=1.5e-06 Score=79.80 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=45.1
Q ss_pred cCCceeEEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecCC------CccccccCCCCCCccchHHHHHHh
Q 014621 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 62 ~Ge~~~IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~~------~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
+|+ +++|+|+||||||||+++|++++.. +.+||..+.. ...++.+++...+++.+...++..
T Consensus 2 ~ge---~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGE---SYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 578 9999999999999999999999821 4677765432 124666776665666666666654
No 449
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.20 E-value=1.6e-06 Score=102.55 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=54.3
Q ss_pred ceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHH---HHHHHcCCCH------HHHHHHHhceEEEccC------
Q 014621 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVGQEP------EEIIHQISETVYPMYK------ 223 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G~ti------~~vi~~~~d~V~~m~~------ 223 (421)
||+-+|.-+. .....+.+.++||||++||+..+.+++ +++.+.|.|+ ++++.+ ||+++-|-.
T Consensus 1706 qRikLa~~l~--~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~G 1782 (1809)
T PRK00635 1706 IAIKIAKFLY--LPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTG 1782 (1809)
T ss_pred HHHHHHHHHh--cCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCC
Confidence 6766555441 011235799999999999999888766 6688889998 777776 899887633
Q ss_pred cEEeecCCcccEE
Q 014621 224 AFIEPDLQTAHIK 236 (421)
Q Consensus 224 g~I~p~~~~aDii 236 (421)
|+|...|...++.
T Consensus 1783 G~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1783 GKILFSGPPKDIS 1795 (1809)
T ss_pred CEEEEEeCHHHHh
Confidence 6777777777664
No 450
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.03 E-value=9.8e-06 Score=84.47 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=54.6
Q ss_pred eeEEEe-CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC---eecC-----------C
Q 014621 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN---YNDS-----------S 105 (421)
Q Consensus 42 ~ls~~~-g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg---~~~~-----------~ 105 (421)
+++..+ .+..+++.++ .+.+|+ .++|+|+||||||||+++|+++. |++|.+.+.| .+.. +
T Consensus 144 ~v~~~l~TGi~aID~L~-~I~~Gq---ri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~ 219 (450)
T PRK06002 144 RVETGLRTGVRVIDIFT-PLCAGQ---RIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLK 219 (450)
T ss_pred cceEEcCCCcEEeeeec-eecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhC
Confidence 344444 3478888885 899999 99999999999999999999998 8999888854 3221 2
Q ss_pred CccccccCCC
Q 014621 106 RIIDGNFDDP 115 (421)
Q Consensus 106 ~~ig~vfq~p 115 (421)
+.++++||..
T Consensus 220 rtI~vV~qsd 229 (450)
T PRK06002 220 KAVAVVATSD 229 (450)
T ss_pred CeEEEEEcCC
Confidence 4578888754
No 451
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.01 E-value=6e-06 Score=75.83 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=49.7
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
.++++++-+++.......+|...+++++.+.+..|. +.+.|.+..++..++....-. .+....||++|.|
T Consensus 104 ~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl----~~Rd~~s~~~~~~r~~~Q~~~------~~~~~~aD~vI~N 173 (179)
T cd02022 104 KVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERL----MKRDGLSEEEAEARIASQMPL------EEKRARADFVIDN 173 (179)
T ss_pred CEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHH----HHcCCCCHHHHHHHHHhcCCH------HHHHHhCCEEEEC
Confidence 688899887776556678899999999876654333 233477776666666543211 1345689999987
Q ss_pred CCCC
Q 014621 240 KFNP 243 (421)
Q Consensus 240 ~~~p 243 (421)
+.+.
T Consensus 174 ~~~~ 177 (179)
T cd02022 174 SGSL 177 (179)
T ss_pred cCCC
Confidence 7653
No 452
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.00 E-value=3e-06 Score=80.24 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc--CCCeeEE
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNF--MPSIAVI 96 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gl--lp~~G~I 96 (421)
++.|.||||||||||+|.++.. ++..|..
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~la~~G~~ 61 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFLAHIGSF 61 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhCCCe
Confidence 8899999999999999999843 3444443
No 453
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.98 E-value=9.2e-06 Score=84.87 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=101.5
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCC------C--------ccccccC
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------R--------IIDGNFD 113 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~------~--------~ig~vfq 113 (421)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.+.+..-|+.-.. . +.-+++.
T Consensus 150 Gi~~iD~l-~~i~~Gq---~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQ---RIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 46889999 9999999 99999999999999999999998 888777766543210 0 0000000
Q ss_pred CCCCCccchHHHHHHhhhccccccccccccccccccccccccccCceE-EEeehhhhhhhccCCccceEEEE--ecCccH
Q 014621 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRI-VIIEGIYALSEKLRPLIDLRVSV--TGGVHF 190 (421)
Q Consensus 114 ~p~l~~~~tv~enl~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrV-lIaegl~~L~d~l~p~ldL~DEp--ts~LD~ 190 (421)
..+ ...+........ ... .. +......++| ++++.+.-+..+.+.--+...|| +.+.|+
T Consensus 226 ~~d---~~p~~r~~~~~~-a~t-------~A-------E~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp 287 (440)
T TIGR01026 226 TSD---QSPLLRLKGAYV-ATA-------IA-------EYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTP 287 (440)
T ss_pred CCC---CCHHHHHHHHHH-HHH-------HH-------HHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccCh
Confidence 000 000000000000 000 00 0000011233 34466555555555555555554 345676
Q ss_pred HHHH---HHHHHHHHcCC-CH----------HHHHHHHhceEEEccCcEEeecCCcccEEEeCCCCCccccc
Q 014621 191 DLVK---RVFRDIQRVGQ-EP----------EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQ 248 (421)
Q Consensus 191 ~~~r---rIlrdl~~~G~-ti----------~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~~~~p~~~~~ 248 (421)
.... +++.+....|. +| .+..+.++|++.-+-+|+|.-+++.|+.-+.-..||..+.+
T Consensus 288 ~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~S 359 (440)
T TIGR01026 288 SVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASIS 359 (440)
T ss_pred hHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccc
Confidence 6443 44444433333 22 34456789999999999999999988887655555555444
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.95 E-value=9.7e-06 Score=76.11 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=28.0
Q ss_pred EEEeehhhhhhhccCCccceEEEEe-----cCccHHHHHHHHHHHH
Q 014621 161 IVIIEGIYALSEKLRPLIDLRVSVT-----GGVHFDLVKRVFRDIQ 201 (421)
Q Consensus 161 VlIaegl~~L~d~l~p~ldL~DEpt-----s~LD~~~~rrIlrdl~ 201 (421)
+.|++.+ ...|.+.++|||+ +++|+...+.+.+-+.
T Consensus 161 ~~ia~~l-----~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~ 201 (215)
T PTZ00132 161 LWLARRL-----TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQ 201 (215)
T ss_pred HHHHHHH-----hhcccceecCCcccCCCccccCHHHHHHHHHHHH
Confidence 4455655 6789999999999 9999998777665443
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=5.3e-06 Score=86.22 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=85.5
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecCCCccccccCCCCCCccchHHHHHH
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~enl~ 128 (421)
..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.|.+.|..- ..+.+.+.
T Consensus 144 iraID~l-l~I~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-----------------~ev~e~~~ 202 (432)
T PRK06793 144 IKSIDSM-LTIGIGQ---KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-----------------REVKDFIR 202 (432)
T ss_pred CEEEecc-ceecCCc---EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-----------------ccHHHHHH
Confidence 5688885 9999999 99999999999999999999998 8888887765431 23333333
Q ss_pred hhhccccccccccccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHH-HHHHHHcCCCH
Q 014621 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRV-FRDIQRVGQEP 207 (421)
Q Consensus 129 ~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrI-lrdl~~~G~ti 207 (421)
.............-....+.........+.....+||-+ .+.-.+-++++|++|...|....-.+ +.+.-..|++.
T Consensus 203 ~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf---r~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~ 279 (432)
T PRK06793 203 KELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF---RDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTL 279 (432)
T ss_pred HHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH---HHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeee
Confidence 211111111100000011111101111111111122222 24567888999999988777522111 12222246655
Q ss_pred --HHHHHHHhceEEEccCcEEe
Q 014621 208 --EEIIHQISETVYPMYKAFIE 227 (421)
Q Consensus 208 --~~vi~~~~d~V~~m~~g~I~ 227 (421)
...+.++++|......|-|.
T Consensus 280 ~~~s~l~~L~ERag~~~~GSiT 301 (432)
T PRK06793 280 LMESYMKKLLERSGKTQKGSIT 301 (432)
T ss_pred eeeccchhHHHHhccCCCcceE
Confidence 22357777777777677653
No 456
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.91 E-value=6.3e-06 Score=89.83 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=29.6
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHH
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~ 83 (421)
...=|+||+.+|+-|- +++|.|-||||||||+
T Consensus 613 ~~nNLkni~v~iPLg~---~t~VTGVSGSGKSTLI 644 (935)
T COG0178 613 RRNNLKNIDVEIPLGV---FTCVTGVSGSGKSTLI 644 (935)
T ss_pred cccCcccceeeccccc---EEEEEecCCCCHHHhH
Confidence 3456899999999999 9999999999999998
No 457
>COG4240 Predicted kinase [General function prediction only]
Probab=97.89 E-value=2.2e-05 Score=74.52 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=67.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHhcC---C--CeeEEEECCeecCCC-------ccccccCC---CCCCccchHHHHH-
Q 014621 64 HGIILVGVAGPSGAGKTVFTEKVLNFM---P--SIAVITMDNYNDSSR-------IIDGNFDD---PRLTDYDTLLENI- 127 (421)
Q Consensus 64 e~~~IigIiGpSGSGKSTL~r~L~gll---p--~~G~I~~Dg~~~~~~-------~ig~vfq~---p~l~~~~tv~enl- 127 (421)
++|+|+||.||-||||||++-.|..++ . ..+..++|++++++. +..-..|+ |...|. ++..|+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~-tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDP-TLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCch-HHHHHHH
Confidence 459999999999999999999998876 1 467899999987631 11111222 223443 343443
Q ss_pred Hhhhc-cccccccccccccccccccc---ccc-ccCceEEEeehhhhh
Q 014621 128 RGLKE-GKAVQVPIYDFKSSSRIGYR---TLE-VPSSRIVIIEGIYAL 170 (421)
Q Consensus 128 ~~l~~-~~~i~~p~~~~~~~~~~~~~---~~~-~~~qrVlIaegl~~L 170 (421)
..+.. +..+..|.||.+.....|.+ .+. .....++|.||-+.-
T Consensus 127 nai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvG 174 (300)
T COG4240 127 NAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVG 174 (300)
T ss_pred HHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeee
Confidence 33333 34567888988765554432 111 123788999997653
No 458
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.86 E-value=2.4e-05 Score=71.34 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEE
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITM 98 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~ 98 (421)
+++|+||||||||||++.|++.++..|.+.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 8999999999999999999998843344443
No 459
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.85 E-value=1.9e-05 Score=60.24 Aligned_cols=33 Identities=15% Similarity=0.438 Sum_probs=26.9
Q ss_pred eeEEe-cCCceeEEEEEcCCCCcHHHHHHHHHhcC-CC
Q 014621 57 QLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS 92 (421)
Q Consensus 57 sl~i~-~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~ 92 (421)
.+.+. .|+ ++.|.|+|||||||++.++.-++ +.
T Consensus 16 ~~~~~~~g~---~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 16 TIDFDPRGD---VTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEeecCCCc---EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34444 467 89999999999999999999887 54
No 460
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.81 E-value=1.6e-05 Score=74.32 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=48.2
Q ss_pred ceEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEe
Q 014621 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (421)
Q Consensus 159 qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~ 238 (421)
..+++++.-+++-......+|...+++++.+.+..|-+.| .|.+..+...++.... + +.+....||++|.
T Consensus 107 ~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R----~g~s~e~~~~ri~~Q~-~-----~~~k~~~aD~vI~ 176 (195)
T PRK14730 107 NPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKR----DGLTEEEAEARINAQW-P-----LEEKVKLADVVLD 176 (195)
T ss_pred CCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhCC-C-----HHHHHhhCCEEEE
Confidence 3577888876665555667888999998877665443222 3777766666554331 1 3345678999997
Q ss_pred CCCC
Q 014621 239 NKFN 242 (421)
Q Consensus 239 ~~~~ 242 (421)
|+.+
T Consensus 177 N~g~ 180 (195)
T PRK14730 177 NSGD 180 (195)
T ss_pred CCCC
Confidence 6664
No 461
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.81 E-value=2.1e-05 Score=68.59 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=43.8
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHH-cCCCHHHHHHHHhceEEEccCcEEeecC-CcccEEEe
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDL-QTAHIKII 238 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~-~G~ti~~vi~~~~d~V~~m~~g~I~p~~-~~aDiiI~ 238 (421)
.|++|-++-. ...+..++.++.+++.+.+..|...|.... +|.+.+++.+.+-.+.......+..+.. ...|++|+
T Consensus 68 ~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~ 145 (147)
T cd02020 68 IVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVID 145 (147)
T ss_pred EEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEe
Confidence 4555543211 224567888999998777654444454332 2678877777666665555455554443 45556654
No 462
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.79 E-value=2.5e-05 Score=74.31 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=40.1
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHc--CCCHHHHHHHHhceEEEccCcEEeecCCcccEE
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~--G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDii 236 (421)
+|++|-.+- ....|.-+++.|.+++.+.+..|+ ..+.... ..+..++...+..|-..-......|-+...|-+
T Consensus 123 ~Vi~Gr~~~-~~v~~~a~~~ifl~a~~~~Ra~Rr-~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i 197 (217)
T TIGR00017 123 IIADGRDIG-TVVFPNAEVKIFLDASVEERAKRR-YKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDAL 197 (217)
T ss_pred EEEEEcCcc-eEEeCCCCEEEEEECCHHHHHHHH-HHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeE
Confidence 455554211 134455789999999877754443 3333344 345566666666654444444555555544443
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.79 E-value=3e-05 Score=71.48 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCeecC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS 104 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~~ 104 (421)
+++|+||||||||||+++|++..+. .+.+.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~ 38 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYIT 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECC
Confidence 8999999999999999999998732 4555555444
No 464
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.79 E-value=6.3e-05 Score=83.40 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=49.0
Q ss_pred EEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEE
Q 014621 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (421)
Q Consensus 162 lIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI 237 (421)
+++||--+-. ...|.-+++.|.+++.+.+..||..+... .+..++.+++..|-..-. ..+.|-....|.++
T Consensus 140 ~v~eGRdigt-vv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~ 210 (712)
T PRK09518 140 IVAEGRDITT-VVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTT 210 (712)
T ss_pred EEEecCccce-EEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEE
Confidence 5666652211 45678899999999998887777654432 677788888877777777 77777655555554
No 465
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.78 E-value=2e-05 Score=87.74 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred eeeEEecC-CceeEEEEEcCCCCcHHHHHHHHHhc-C-CCee
Q 014621 56 CQLLAQKN-HGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIA 94 (421)
Q Consensus 56 Vsl~i~~G-e~~~IigIiGpSGSGKSTL~r~L~gl-l-p~~G 94 (421)
+++.+..+ + +++|.||||+|||||+|.|++. + +.+|
T Consensus 314 ~di~l~~~~~---~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 314 FTLNLKFEKR---VLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred ceeEeCCCce---EEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 56777666 6 9999999999999999999998 3 5555
No 466
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.78 E-value=1.4e-05 Score=74.78 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=46.9
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
.+++++.-+++-......+|...+++++.+.+..|- ..+.|.+..+...++.... .+.+....||++|.|
T Consensus 104 ~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL----~~R~g~s~e~a~~ri~~Q~------~~~~k~~~aD~vI~N 173 (196)
T PRK14732 104 KLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRT----ISRDGMKKEDVLARIASQL------PITEKLKRADYIVRN 173 (196)
T ss_pred CcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHH----HHcCCCCHHHHHHHHHHcC------CHHHHHHhCCEEEEC
Confidence 466666665544334556899999999876654332 2224778777666665432 244567789999987
Q ss_pred CCC
Q 014621 240 KFN 242 (421)
Q Consensus 240 ~~~ 242 (421)
+++
T Consensus 174 ~~~ 176 (196)
T PRK14732 174 DGN 176 (196)
T ss_pred CCC
Confidence 664
No 467
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.77 E-value=4e-05 Score=77.07 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=44.0
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
+..+++++ +.+.+|+ .++|+|+||+|||||+++|++.. |+.|.+..-|.
T Consensus 56 Gi~aiD~l-~~i~~Gq---ri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQ---RLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCc---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 46799999 9999999 99999999999999999999999 88887776553
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=97.76 E-value=4.9e-05 Score=79.05 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=45.5
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCeec
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYND 103 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~---G~I~~Dg~~~ 103 (421)
.+..+++++ +.+.+|+ .++|+|+||+|||||+++|++.. ++. |.|..++.+.
T Consensus 137 tGi~aid~l-l~i~~Gq---~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQ---RMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred CCcEEEeee-eeEecCC---EEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 446899999 9999999 99999999999999999999988 665 7777777653
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.76 E-value=2.5e-05 Score=72.78 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.0
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-C-CeeEEEECCeecCC---CccccccCC
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDSS---RIIDGNFDD 114 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p-~~G~I~~Dg~~~~~---~~ig~vfq~ 114 (421)
+++. +++|+|+||||||||++.|.+.+ + ..|.+.+||..... ..+++.+|+
T Consensus 22 ~~~~---~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGV---VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCE---EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 4455 99999999999999999999987 3 45789999865432 124555444
No 470
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.75 E-value=7.1e-05 Score=58.02 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gll 90 (421)
+++|.|++||||||+++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 471
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.72 E-value=4.2e-05 Score=78.65 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCccccccccceeeeeecCcceecCeeeeeeeEEEeC-cEEEEe-----------eeeeEEecCCceeEEEEEcCCCCc
Q 014621 11 SPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKG-FFIVIR-----------ACQLLAQKNHGIILVGVAGPSGAG 78 (421)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~y~~~~v~~~ls~~~g-~~~~L~-----------~Vsl~i~~Ge~~~IigIiGpSGSG 78 (421)
+.+|...|++-+.. ............-.+++++.|. ...+|+ |+.+.+.+|+ .++|+||+|||
T Consensus 106 ~~ER~~~Ll~v~~v--n~~~~e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq---~~~IvG~~g~G 180 (415)
T TIGR00767 106 EGERYFALLKVESV--NGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQ---RGLIVAPPKAG 180 (415)
T ss_pred cHhHHHHHhCCCcc--CCCCccccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCC---EEEEECCCCCC
Confidence 34466666655432 1111223344578899999995 457886 9999999999 99999999999
Q ss_pred HHHHHHHHHhcC
Q 014621 79 KTVFTEKVLNFM 90 (421)
Q Consensus 79 KSTL~r~L~gll 90 (421)
||||++.|...+
T Consensus 181 KTtL~~~i~~~I 192 (415)
T TIGR00767 181 KTVLLQKIAQAI 192 (415)
T ss_pred hhHHHHHHHHhh
Confidence 999999999986
No 472
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=2.3e-05 Score=66.39 Aligned_cols=32 Identities=28% Similarity=0.689 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
+|+|.|++||||||+++.|+..+ +.-.+.+|+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecc
Confidence 68999999999999999999976 334677777
No 473
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.71 E-value=2.3e-05 Score=83.18 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=53.7
Q ss_pred eeeEEEeCcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeec
Q 014621 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (421)
Q Consensus 41 ~~ls~~~g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~ 103 (421)
.+++.-+|...+++++++.+..|+ .++|+|+||||||||++.|.+++ |..|...++...+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G~---~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGGH---NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCCc---EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 477778888889999999999999 99999999999999999999999 7888888876543
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.71 E-value=4.2e-05 Score=76.86 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=45.0
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCeecC-------------CCccccccCCCCCCccchHHHH
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTDYDTLLEN 126 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~~~-------------~~~ig~vfq~p~l~~~~tv~en 126 (421)
.+++ +++++|||||||||++..|++.+ +..+.|.+.+.+.. +..++++++.....+...+.++
T Consensus 112 ~~~~---vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPF---VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCe---EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 3455 99999999999999999999998 66566766554432 1235566665444444455666
Q ss_pred HHh
Q 014621 127 IRG 129 (421)
Q Consensus 127 l~~ 129 (421)
+..
T Consensus 189 l~~ 191 (318)
T PRK10416 189 IQA 191 (318)
T ss_pred HHH
Confidence 554
No 475
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.70 E-value=2.6e-05 Score=77.93 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=36.0
Q ss_pred eeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECC
Q 014621 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (421)
Q Consensus 56 Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg 100 (421)
+++.+..|+ .++|+|++|||||||+++|++.+ +..+.+.+++
T Consensus 137 l~~~v~~~~---~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRK---NIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCC---EEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 456677899 99999999999999999999999 6677777754
No 476
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.69 E-value=4.7e-05 Score=79.29 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=45.5
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
.+..+++++ +.+.+|+ .++|+|+||+|||||+++|+++. ++.+.+.+.|.
T Consensus 141 tGi~aID~l-l~i~~Gq---rigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQ---RVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CCceeeeee-eecCCCC---EEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 357899999 9999999 99999999999999999999998 88888887765
No 477
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.69 E-value=1.6e-05 Score=73.39 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=29.9
Q ss_pred cCCccceEEEEecCccHHHHH----HHHHHHHHc-CCCH-----HHHHHHHhce
Q 014621 174 LRPLIDLRVSVTGGVHFDLVK----RVFRDIQRV-GQEP-----EEIIHQISET 217 (421)
Q Consensus 174 l~p~ldL~DEpts~LD~~~~r----rIlrdl~~~-G~ti-----~~vi~~~~d~ 217 (421)
..|.+.++|||++++|+.... .+++.+.++ |.++ ...+.++++.
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 478899999999999998544 445666554 6655 2235566654
No 478
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.67 E-value=3.4e-05 Score=71.76 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=25.8
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcCC
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gllp 91 (421)
++|+ +++|+||||||||||+++|++.+|
T Consensus 3 ~~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4788 999999999999999999999875
No 479
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=6.7e-05 Score=68.32 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg 100 (421)
-|.|+|++|||||||++.|+..+ ....+++|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecch
Confidence 48899999999999999999887 223455553
No 480
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.65 E-value=2.9e-05 Score=70.37 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=38.1
Q ss_pred EcCCCCcHHHHHHHHHhcCCCeeEEEECCeec------CCCccccccCCCCCCccchHHHHHHh
Q 014621 72 AGPSGAGKTVFTEKVLNFMPSIAVITMDNYND------SSRIIDGNFDDPRLTDYDTLLENIRG 129 (421)
Q Consensus 72 iGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~~------~~~~ig~vfq~p~l~~~~tv~enl~~ 129 (421)
+|+|||||||++++|++.+ |.+.+|+-.. .....|+.+|+....++.+...+..+
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 5999999999999999987 4566676432 11234667776555556666666655
No 481
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.64 E-value=7e-05 Score=78.21 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=45.4
Q ss_pred CcEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 48 g~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
.+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+.+.|.
T Consensus 149 TGi~~ID~l-~~i~~Gq---~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQ---RMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred CCceeccce-eeecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 346799999 9999999 99999999999999999999998 88888888775
No 482
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.62 E-value=6.7e-05 Score=71.62 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=39.6
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEE
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITM 98 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~ 98 (421)
..+.+++++.+.+|+ +++|.||||+||||+++.+++.. +..|....
T Consensus 18 ~~v~n~i~~~~~~g~---~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGY---CQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCc---EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 457899999999999 99999999999999999999953 77776543
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=6e-05 Score=69.24 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhcC-C---CeeEEEECC
Q 014621 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (421)
Q Consensus 66 ~~IigIiGpSGSGKSTL~r~L~gll-p---~~G~I~~Dg 100 (421)
+.+++|+|+||||||||++.|...+ + ..|.|..++
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 5599999999999999999999988 4 257777654
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=97.60 E-value=4e-05 Score=78.19 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=47.5
Q ss_pred EeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee---cC-CCccccccCCCCCCc
Q 014621 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---DS-SRIIDGNFDDPRLTD 119 (421)
Q Consensus 53 L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~---~~-~~~ig~vfq~p~l~~ 119 (421)
++.+...+.+|+ +++|+|+||+|||||++.|.|.. +..|.|..++.. .+ .+.+.+++|+..++|
T Consensus 185 l~~L~~~L~~g~---~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 185 LDVLAAWLSGGK---TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHhhcCC---EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 445556677899 99999999999999999999998 899999987642 11 234555555444443
No 485
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.59 E-value=0.00011 Score=76.29 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=45.5
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. ++.|.+.+.|..
T Consensus 124 Gi~~iD~l-~~i~~Gq---ri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger 174 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQ---RVGIFAGSGVGKSTLLGMIARNAKADINVIALIGER 174 (413)
T ss_pred cceeeeeE-EEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccc
Confidence 46799999 9999999 99999999999999999999998 888988887753
No 486
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.57 E-value=7.7e-05 Score=69.97 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=45.0
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
.+++++.-+++-.-....+|...+++++.+.+.. |...++|.+..++..++...+-.. .....||++|.|
T Consensus 108 ~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~----Rl~~R~g~s~e~~~~ri~~Q~~~~------~k~~~ad~vI~N 177 (200)
T PRK14734 108 KVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVR----RLVEKRGLDEDDARRRIAAQIPDD------VRLKAADIVVDN 177 (200)
T ss_pred CEEEEEeeceeEcCccccCCeEEEEECCHHHHHH----HHHHcCCCCHHHHHHHHHhcCCHH------HHHHhCCEEEEC
Confidence 4666666544444445678999999998776542 223335888777666665443221 124688999876
Q ss_pred CCC
Q 014621 240 KFN 242 (421)
Q Consensus 240 ~~~ 242 (421)
+++
T Consensus 178 ~g~ 180 (200)
T PRK14734 178 NGT 180 (200)
T ss_pred cCC
Confidence 664
No 487
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.57 E-value=0.00011 Score=76.40 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=44.4
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCee
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~~ 102 (421)
+..+++ .++.+.+|+ .++|+|+||+|||||+++|++.. |+.|.+...|..
T Consensus 127 Gi~aiD-~~~~i~~Gq---~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQ---RLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCc---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 456776 599999999 99999999999999999999998 889988887763
No 488
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.57 E-value=8e-05 Score=77.59 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
+..+++++ +.+.+|+ .++|.|+||+|||||+++|++.. |+.|.+...|.
T Consensus 132 G~~~id~l-~~i~~Gq---~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQ---RIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred Cceeehhh-ccccCCC---EEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 46799999 9999999 99999999999999999999998 88888877554
No 489
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.56 E-value=0.00016 Score=67.01 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=28.8
Q ss_pred ehhhhhh--hccCCccceEEEEecCccHHHHHHHH---HHHHHcC
Q 014621 165 EGIYALS--EKLRPLIDLRVSVTGGVHFDLVKRVF---RDIQRVG 204 (421)
Q Consensus 165 egl~~L~--d~l~p~ldL~DEpts~LD~~~~rrIl---rdl~~~G 204 (421)
|+++.+- .-.+..+-++|||.++|.+..+-.++ +++.+.|
T Consensus 134 Esf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG 178 (233)
T COG3910 134 ESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSG 178 (233)
T ss_pred hHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcC
Confidence 4454443 25677899999999999998766655 6666655
No 490
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.56 E-value=0.00013 Score=74.78 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=85.1
Q ss_pred cEEEEeeeeeEEecCCc--eeEEEEEcCCCCcHHHHHHHHHhcC-CCee-EEEECCeecCCCccccccCCCCCCccchHH
Q 014621 49 FFIVIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~--~~IigIiGpSGSGKSTL~r~L~gll-p~~G-~I~~Dg~~~~~~~ig~vfq~p~l~~~~tv~ 124 (421)
.+..+.+-.|.++.|+- ..++..+|.||.|||||+++++|.+ |+.| +|..-+ ++|-+|...--..-+++
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln-------VSykpqkispK~~~tvR 420 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN-------VSYKPQKISPKREGTVR 420 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc-------eeccccccCccccchHH
Confidence 34556666777777653 4588999999999999999999998 7654 443332 22223322211122333
Q ss_pred HHHHhhhcc--------ccccccc-----cccccccccccccccccCceEEEeehhhhhhhccCCccceEEEEecCccHH
Q 014621 125 ENIRGLKEG--------KAVQVPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (421)
Q Consensus 125 enl~~l~~~--------~~i~~p~-----~~~~~~~~~~~~~~~~~~qrVlIaegl~~L~d~l~p~ldL~DEpts~LD~~ 191 (421)
..+..-... ..+..|. ++......+|+ ..|||.++-.+ --...+-+.|||.+-+|.+
T Consensus 421 ~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSgg-----elQRval~KOG-----GKpAdvYliDEpsAylDSe 490 (592)
T KOG0063|consen 421 QLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGG-----ELQRVALALCL-----GKPADVYLIDEPSAYLDSE 490 (592)
T ss_pred HHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCch-----hhHHHHHHHhc-----CCCCceEEecCchhhcChH
Confidence 333221000 0111111 11111222222 34787776666 6667888999999999987
Q ss_pred HHH---HHH-HHHHHcCCCHHH------HHHHHhceEEEc
Q 014621 192 LVK---RVF-RDIQRVGQEPEE------IIHQISETVYPM 221 (421)
Q Consensus 192 ~~r---rIl-rdl~~~G~ti~~------vi~~~~d~V~~m 221 (421)
... +++ |-+...+.|... .....+|+|++.
T Consensus 491 QRi~AskvikRfilhakktafvVEhdfImaTYladrvivf 530 (592)
T KOG0063|consen 491 QRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVF 530 (592)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEE
Confidence 432 333 333344555411 123456776655
No 491
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.52 E-value=9.2e-05 Score=77.28 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=42.9
Q ss_pred EEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCe---eEEEECCeec
Q 014621 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYND 103 (421)
Q Consensus 50 ~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~---G~I~~Dg~~~ 103 (421)
..+++.+ +.+.+|+ .++|+|+||+|||||+++|+++. |+. |.|.++|.+.
T Consensus 163 iraID~l-l~I~~Gq---ri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 163 VRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV 216 (455)
T ss_pred ceeeeec-ccccCCc---EEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence 4566666 8999999 99999999999999999999998 764 7888888754
No 492
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.52 E-value=7.2e-05 Score=68.04 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~ 92 (421)
+++|+||||||||||++.|++..|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 8999999999999999999998743
No 493
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.52 E-value=0.00014 Score=67.68 Aligned_cols=73 Identities=25% Similarity=0.252 Sum_probs=44.7
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
.++++++-+++-......+|....++++.+.+. +|+. .++|.+-.+...++.... . ..+....+|++|.|
T Consensus 107 ~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~-~Rl~---~R~~~s~e~~~~ri~~Q~-~-----~~~~~~~ad~vI~N 176 (194)
T PRK00081 107 PYVVLDIPLLFENGLEKLVDRVLVVDAPPETQL-ERLM---ARDGLSEEEAEAIIASQM-P-----REEKLARADDVIDN 176 (194)
T ss_pred CEEEEEehHhhcCCchhhCCeEEEEECCHHHHH-HHHH---HcCCCCHHHHHHHHHHhC-C-----HHHHHHhCCEEEEC
Confidence 678888887766556667888888898755542 2322 234777665555554321 1 12234578998876
Q ss_pred CCC
Q 014621 240 KFN 242 (421)
Q Consensus 240 ~~~ 242 (421)
+++
T Consensus 177 ~g~ 179 (194)
T PRK00081 177 NGD 179 (194)
T ss_pred CCC
Confidence 654
No 494
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.51 E-value=0.00015 Score=74.91 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=92.8
Q ss_pred eEEEeehhhhhhhccCCccceEEEEecCccHHHHHHHHHHHHHcCCCHHHHHHHHhceEEEccCcEEeecCCcccEEEeC
Q 014621 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (421)
Q Consensus 160 rVlIaegl~~L~d~l~p~ldL~DEpts~LD~~~~rrIlrdl~~~G~ti~~vi~~~~d~V~~m~~g~I~p~~~~aDiiI~~ 239 (421)
.+++.+.-+++.......+|..++++++.+.+..| + ..++|.+..+....+..+.. ..+....||++|.|
T Consensus 106 ~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~R-l---~~rRg~s~~~a~~ri~~Q~~------~e~k~~~AD~vIdN 175 (395)
T PRK03333 106 AVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRR-L---VEQRGMAEADARARIAAQAS------DEQRRAVADVWLDN 175 (395)
T ss_pred CEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHH-H---HhcCCCCHHHHHHHHHhcCC------hHHHHHhCCEEEEC
Confidence 34444444333335566789999999987765432 2 22468887666555544311 22346788999987
Q ss_pred CCCCcccccCCeeeccCCCcchHHHHHHHhcccccccccccceeecCCCCCCch----hhhhhhhcccCCceEEEEEeee
Q 014621 240 KFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD----ACQSYLRMRNRDGKYNLMFEEW 315 (421)
Q Consensus 240 ~~~p~~~~~~p~~v~k~~~~~~~~~i~~~l~~~~~~~~~~~~~i~~~p~~~~~~----~~~~~l~~~~~~~~~~l~~~~~ 315 (421)
+.++...... -..+.......+++.........+..+-+.|.++.=. .....|+..-.+..+++.--|.
T Consensus 176 ~~s~e~l~~~-------v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp~W~~~f~~e~~~l~~~l~~~~~~IeHIGS 248 (395)
T PRK03333 176 SGTPDELVEA-------VRALWADRLLPFAHNLRARRRAARAPPRLVPADPSWPAQAQRIVARLKTAAGHKALRVDHIGS 248 (395)
T ss_pred CCCHHHHHHH-------HHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCCCcHHHHHHHHHHHHHhcCccceEEEEecc
Confidence 6653221111 1112223333333333333333344566666654411 1222233333345567766776
Q ss_pred cCCCCeEeeeeeeeceeeeEec-------ccccccceee
Q 014621 316 VTDSPFIISPRITFEVSVRLLG-------GLMALGYTIA 347 (421)
Q Consensus 316 ~~~~p~i~~~~~~f~v~~~il~-------g~~~~g~~~~ 347 (421)
-+=-.+...|..+-.|.|.-+. .|.++||...
T Consensus 249 TsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~ 287 (395)
T PRK03333 249 TAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRL 287 (395)
T ss_pred CCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCccc
Confidence 6666677888888777776543 4588899764
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.49 E-value=9.8e-05 Score=67.22 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=32.1
Q ss_pred ecCCceeEEEEEcCCCCcHHHHHHHHHhcC--CCeeEEEECCee
Q 014621 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYN 102 (421)
Q Consensus 61 ~~Ge~~~IigIiGpSGSGKSTL~r~L~gll--p~~G~I~~Dg~~ 102 (421)
++|. ++.+.|++||||||+++.|.+.+ +..+.+.+|+..
T Consensus 5 ~~~~---~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 5 PNGY---VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCC---EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 4555 99999999999999999999887 456777777643
No 496
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=0.00015 Score=71.84 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=42.8
Q ss_pred eeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEE---CCeecCC-------CccccccCCCCC
Q 014621 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRL 117 (421)
Q Consensus 55 ~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~---Dg~~~~~-------~~ig~vfq~p~l 117 (421)
.+...+. +. +++++|+||+|||||++.|.+.. +..|.+.. .|.+.++ ...+++.|.|.+
T Consensus 154 ~L~~~L~-~k---~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~ 223 (287)
T cd01854 154 ELREYLK-GK---TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGF 223 (287)
T ss_pred HHHhhhc-cc---eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCC
Confidence 3334444 36 89999999999999999999998 77888875 2333321 125678888876
No 497
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.48 E-value=0.00019 Score=74.56 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=43.4
Q ss_pred cEEEEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhcC-CCeeEEEECCe
Q 014621 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (421)
Q Consensus 49 ~~~~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gll-p~~G~I~~Dg~ 101 (421)
+..+++.+ +.+.+|+ .++|.|+||+|||||+++|++.. |+.+.+...|.
T Consensus 124 Gi~~id~l-~~i~~Gq---~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQ---RMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred eEEeecce-EEEecCc---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 47889999 9999999 99999999999999999999998 88777766554
No 498
>PRK06217 hypothetical protein; Validated
Probab=97.47 E-value=0.00022 Score=65.58 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCeeEEEECCee
Q 014621 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (421)
Q Consensus 68 IigIiGpSGSGKSTL~r~L~gllp~~G~I~~Dg~~ 102 (421)
.|.|+|.+||||||+++.|+..+ ..-.+..|.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTDDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCcee
Confidence 58999999999999999999987 22356666543
No 499
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=97.47 E-value=0.00016 Score=67.49 Aligned_cols=109 Identities=25% Similarity=0.355 Sum_probs=68.4
Q ss_pred ecCCc-eeEEEEEcCCCCcHHHHHHHHHhcC-------CCeeEEEECCeecCCC-cccc--------ccCCC---CCCcc
Q 014621 61 QKNHG-IILVGVAGPSGAGKTVFTEKVLNFM-------PSIAVITMDNYNDSSR-IIDG--------NFDDP---RLTDY 120 (421)
Q Consensus 61 ~~Ge~-~~IigIiGpSGSGKSTL~r~L~gll-------p~~G~I~~Dg~~~~~~-~ig~--------vfq~p---~l~~~ 120 (421)
+.|.. |+++|+.||-|||||||+-+|-..+ -.++.+++|+++++.. +... ..|+. ...|.
T Consensus 25 ~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~ 104 (282)
T KOG2878|consen 25 KDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDL 104 (282)
T ss_pred cCCCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccH
Confidence 55554 9999999999999999988775543 2579999999987632 1111 12222 22343
Q ss_pred chHHHHHHhhh----ccccccccccccccccccccc-----cccccCceEEEeehhhh
Q 014621 121 DTLLENIRGLK----EGKAVQVPIYDFKSSSRIGYR-----TLEVPSSRIVIIEGIYA 169 (421)
Q Consensus 121 ~tv~enl~~l~----~~~~i~~p~~~~~~~~~~~~~-----~~~~~~qrVlIaegl~~ 169 (421)
..+.+.+..+. .+..+..|.|+.+.....|.+ ...+.+-.++|.||.++
T Consensus 105 kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWml 162 (282)
T KOG2878|consen 105 KLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWML 162 (282)
T ss_pred HHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccc
Confidence 33344444432 234467888887765444422 23444678899999854
No 500
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.47 E-value=8e-05 Score=67.99 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred EEeeeeeEEecCCceeEEEEEcCCCCcHHHHHHHHHhc
Q 014621 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (421)
Q Consensus 52 ~L~~Vsl~i~~Ge~~~IigIiGpSGSGKSTL~r~L~gl 89 (421)
+|+++++..+++. ++|+|++|||||||++.+.+-
T Consensus 9 ~~~~~~~~~~~~k----i~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAK----ILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCE----EEEECCCCCCHHHHHHHHhcC
Confidence 3566666656655 699999999999999999873
Done!