Query 014622
Match_columns 421
No_of_seqs 156 out of 754
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 1.6E-41 3.5E-46 309.6 14.9 146 13-160 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 3E-35 6.5E-40 260.3 12.9 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 8.7E-25 1.9E-29 183.6 10.5 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 2.2E-22 4.7E-27 162.7 4.5 72 89-160 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.6 2.5E-16 5.5E-21 122.2 5.9 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.4 2E-13 4.3E-18 116.7 7.1 98 13-116 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 97.9 5.8E-05 1.3E-09 61.6 7.8 99 15-129 10-109 (111)
8 PHA02713 hypothetical protein; 97.9 0.00013 2.9E-09 77.9 12.1 107 15-141 25-133 (557)
9 smart00225 BTB Broad-Complex, 97.2 0.00088 1.9E-08 51.0 5.9 85 22-124 5-90 (90)
10 PHA03098 kelch-like protein; P 97.1 0.0025 5.4E-08 66.7 9.9 99 15-135 9-109 (534)
11 PHA02790 Kelch-like protein; P 96.8 0.0022 4.8E-08 67.2 6.7 96 19-132 24-121 (480)
12 KOG4441 Proteins containing BT 96.2 0.011 2.4E-07 64.0 7.5 96 16-130 37-133 (571)
13 KOG2716 Polymerase delta-inter 86.8 2.9 6.3E-05 41.2 8.0 102 16-134 5-108 (230)
14 KOG3433 Protein involved in me 77.3 2.3 5.1E-05 40.9 3.3 37 109-150 162-200 (203)
15 COG5124 Protein predicted to b 75.3 2.1 4.7E-05 41.1 2.4 31 115-150 174-204 (209)
16 KOG0783 Uncharacterized conser 69.7 5.8 0.00013 45.9 4.5 116 10-141 707-825 (1267)
17 KOG4682 Uncharacterized conser 68.3 8.6 0.00019 41.2 5.2 121 17-158 71-194 (488)
18 KOG4350 Uncharacterized conser 64.4 19 0.0004 39.0 6.7 147 16-173 45-214 (620)
19 PF02214 BTB_2: BTB/POZ domain 54.1 5.7 0.00012 32.4 0.8 83 24-123 6-94 (94)
20 KOG2002 TPR-containing nuclear 52.1 8.5 0.00018 44.8 2.0 7 203-209 882-888 (1018)
21 KOG2422 Uncharacterized conser 50.1 12 0.00025 41.8 2.5 41 287-328 150-193 (665)
22 PF11822 DUF3342: Domain of un 43.5 35 0.00076 35.4 4.6 90 26-131 14-104 (317)
23 PF03962 Mnd1: Mnd1 family; I 38.4 27 0.00059 33.1 2.8 41 105-150 145-187 (188)
24 PF14384 DUF4415: Domain of un 36.1 31 0.00068 27.1 2.4 26 307-332 34-59 (62)
25 PF07928 Vps54: Vps54-like pro 35.0 13 0.00028 33.7 0.0 120 24-183 1-125 (135)
26 PLN03083 E3 UFM1-protein ligas 34.1 18 0.00039 41.6 0.9 28 306-333 511-539 (803)
27 PF03656 Pam16: Pam16; InterP 31.8 50 0.0011 29.9 3.2 36 130-165 51-88 (127)
28 PF01886 DUF61: Protein of unk 26.2 38 0.00082 30.8 1.5 59 308-368 1-59 (132)
29 KOG2422 Uncharacterized conser 26.0 34 0.00074 38.3 1.4 18 142-159 24-41 (665)
30 PF09278 MerR-DNA-bind: MerR, 26.0 84 0.0018 23.8 3.2 39 132-184 13-51 (65)
31 PF05553 DUF761: Cotton fibre 22.2 74 0.0016 23.4 2.1 25 306-332 3-27 (38)
32 PRK05365 malonic semialdehyde 22.2 49 0.0011 30.5 1.4 34 107-150 131-164 (195)
33 PF06375 BLVR: Bovine leukaemi 20.4 34 0.00073 32.0 0.0 8 150-157 2-9 (154)
34 KOG0511 Ankyrin repeat protein 20.3 2.4E+02 0.0053 30.6 6.1 103 26-132 301-431 (516)
35 PRK14892 putative transcriptio 20.2 34 0.00074 29.8 -0.0 39 379-418 42-80 (99)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=309.57 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.3
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCC--------
Q 014622 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (421)
Q Consensus 13 ~~s~~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~-------- 84 (421)
+++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 677899999999999999999999999999999999986432 699999 7999999999999999998643
Q ss_pred -CcccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 014622 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (421)
Q Consensus 85 -s~deI~eWD~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (421)
....+++||.+|+++|..+||+||.|||||+|++|+++||++||+||+||||+|||++|||++|+|+||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999988777664
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=260.34 Aligned_cols=141 Identities=34% Similarity=0.512 Sum_probs=128.7
Q ss_pred ccEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCC---------c
Q 014622 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSS---------N 86 (421)
Q Consensus 16 ~~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s---------~ 86 (421)
++|.|.|.||++|.|+..+|..|-+|++|+.+.+- .+.|||+| +|.|.+|.+|++||+||...... .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 47999999999999999999999999999876542 47899999 89999999999999999974311 1
Q ss_pred ccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 014622 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (421)
Q Consensus 87 deI~eWD~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (421)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 24567999999999999999999999999999999999999999999999999999999999999999999986
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=8.7e-25 Score=183.57 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.0
Q ss_pred ccEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCc---ccchhh
Q 014622 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (421)
Q Consensus 16 ~~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~---deI~eW 92 (421)
++|+|+|+||++|.|++++|++|++|++|+.+.|.+.+...+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998776543333689999 899999999999999999865432 358999
Q ss_pred hhhhccCChHHHHHHHhhcccCCC
Q 014622 93 DEKFIRMDTKRLCELTSAADSLQL 116 (421)
Q Consensus 93 D~eFLk~D~e~LfELI~AAnYLdI 116 (421)
|.+|++++.+.||+|+.|||||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.86 E-value=2.2e-22 Score=162.72 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.2
Q ss_pred chhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 014622 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (421)
Q Consensus 89 I~eWD~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (421)
+++||++|++++.+.|++|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999997764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.64 E-value=2.5e-16 Score=122.18 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.6
Q ss_pred cEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcc
Q 014622 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (421)
Q Consensus 17 ~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk 80 (421)
+|+|+|+||++|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999866543 2289999 899999999999999997
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.44 E-value=2e-13 Score=116.74 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=84.2
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCC-CCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchh
Q 014622 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGS-SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (421)
Q Consensus 13 ~~s~~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~-se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~e 91 (421)
|.+.+|+|+|+||.+|.|.+++|+.|+||+.|+...|... .....|-++ +|.+.+|+||++|+.+...+..+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 4467999999999999999999999999999998665432 345779999 79999999999999987766555568898
Q ss_pred hhhhhccCChHHHHHHHhhcccCCC
Q 014622 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (421)
Q Consensus 92 WD~eFLk~D~e~LfELI~AAnYLdI 116 (421)
| .+.+++.++|+.|||||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 8 5889999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.88 E-value=5.8e-05 Score=61.64 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=76.0
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhh
Q 014622 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (421)
Q Consensus 15 s~~IkLqSSDGqiFeVs~eaA~-qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD 93 (421)
...++|+..||..|.|.+.++. .|+.+++++...+........|+++ ++++.++..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 4589999999999999999985 6999999987663222223468888 89999999999999433311 11
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 014622 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (421)
Q Consensus 94 ~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~ 129 (421)
..+.+.+++.+|++|+|+.|.+.|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 366789999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=0.00013 Score=77.93 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=87.0
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HchHHHHHhhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhh
Q 014622 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (421)
Q Consensus 15 s~~IkLqSSDGqiFeVs~eaA~-qS~tIr~mLed~g~g~s-e~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eW 92 (421)
-+.|+|...+|+.|.+.+.++. .|+.++.|+.. ++.++ ....|.|. .|+..+|+.||+|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4689999888999999999887 68999998854 33221 24568897 799999999999987632
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 014622 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (421)
Q Consensus 93 D~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe 141 (421)
++.+.+.+|+.||++|+|+.|.++||.++...+.-.+-=+|..
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 2355789999999999999999999999998888766666654
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.22 E-value=0.00088 Score=51.03 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=65.6
Q ss_pred eCCCCEEEecHHHHHH-chHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCC
Q 014622 22 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (421)
Q Consensus 22 SSDGqiFeVs~eaA~q-S~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD~eFLk~D 100 (421)
..+|..|.|.+.++.. |+.++.++..... ......|.++ +++..+++.|++||...... ++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~~----------------~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKLD----------------LP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCceee----------------cC
Confidence 5577999999988875 6889988764322 1135678898 79999999999999865321 23
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 014622 101 TKRLCELTSAADSLQLKPLVDLTS 124 (421)
Q Consensus 101 ~e~LfELI~AAnYLdIk~LLDL~c 124 (421)
...+.+++.+|++++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336889999999999999998774
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.11 E-value=0.0025 Score=66.67 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=77.7
Q ss_pred CccEEEEe-CCCCEEEecHHHHH-HchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhh
Q 014622 15 KSYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (421)
Q Consensus 15 s~~IkLqS-SDGqiFeVs~eaA~-qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eW 92 (421)
-+.|+|.- .+|+.|.+.+.++. .|+.++.|+.... . ...|.|+ . +..+|+.|++|+..-.-
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~-~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~----------- 71 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNF-K---ENEINLN-I-DYDSFNEVIKYIYTGKI----------- 71 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCC-C---CceEEec-C-CHHHHHHHHHHhcCCce-----------
Confidence 35677775 68999999999986 5899999876432 1 4568897 5 99999999999876542
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 014622 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135 (421)
Q Consensus 93 D~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKT 135 (421)
.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 72 -----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 -----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred -----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 24566689999999999999999999998887665433
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.84 E-value=0.0022 Score=67.20 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=68.8
Q ss_pred EEEeCCCCEEEecHHHH-HHchHHHHHhhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhh
Q 014622 19 WLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 96 (421)
Q Consensus 19 kLqSSDGqiFeVs~eaA-~qS~tIr~mLed~g~g~se~~~IPLP-~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD~eF 96 (421)
.+...-|..|.+.+.++ ..|+.++.|+.. ++.++. ..|.+. .+|+..+|+.||+|+..-+-
T Consensus 24 ~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~l--------------- 86 (480)
T PHA02790 24 TIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGKV--------------- 86 (480)
T ss_pred eEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeeeE---------------
Confidence 34445688999999995 568999999864 333322 234431 26999999999999844331
Q ss_pred ccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 014622 97 IRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (421)
Q Consensus 97 Lk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~Ik 132 (421)
.++.+.+.+|+.||++|+|..+++.||+.+...|.
T Consensus 87 -~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 87 -YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred -EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 24556688888888888888888888888776554
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=0.011 Score=63.98 Aligned_cols=96 Identities=26% Similarity=0.321 Sum_probs=77.5
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhh
Q 014622 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (421)
Q Consensus 16 ~~IkLqSSDGqiFeVs~eaA~-qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD~ 94 (421)
..+.|.-.+ +.|.+.+-++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 37 cDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i------------- 100 (571)
T KOG4441|consen 37 CDVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL------------- 100 (571)
T ss_pred ceEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE-------------
Confidence 466676666 88999888875 58999998864 3334456789998 6999999999999877663
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHH
Q 014622 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARI 130 (421)
Q Consensus 95 eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~ 130 (421)
.++.+.+-+|+.||++|+|..+++.||..+...
T Consensus 101 ---~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 ---EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred ---EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356778899999999999999999999888754
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=86.82 E-value=2.9 Score=41.24 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=76.1
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HchHHHHHhhhcC-CCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhh
Q 014622 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKG-MGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (421)
Q Consensus 16 ~~IkLqSSDGqiFeVs~eaA~-qS~tIr~mLed~g-~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD 93 (421)
..|+| ---|.+|.-+...+. +.+.++.|+.... ...++...|=+ +-++.-+..|+-|++--..+ +|+
T Consensus 5 ~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe-- 73 (230)
T KOG2716|consen 5 ETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE-- 73 (230)
T ss_pred ceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--
Confidence 34453 356889998888876 5688888876542 12223455666 58999999999999843322 332
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 014622 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (421)
Q Consensus 94 ~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGK 134 (421)
+...|-+|+.=|.|-.+.+|+++|..+++..+.+.
T Consensus 74 ------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 ------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 56788999999999999999999999999987775
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.28 E-value=2.3 Score=40.92 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=29.4
Q ss_pred hhccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 014622 109 SAADS--LQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (421)
Q Consensus 109 ~AAnY--LdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (421)
.|||. =+|--|.+++|+.. |.-+.+||+.||||+||.
T Consensus 162 eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 162 EAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 45553 37778888888664 889999999999999874
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=75.31 E-value=2.1 Score=41.08 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 014622 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (421)
Q Consensus 115 dIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (421)
+|.-|.++.|+.. +.-|+|||+.||||+|+.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 5677888777554 788999999999999874
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=69.67 E-value=5.8 Score=45.89 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCCCCCccEEEEeCCCCEEEecHHHHH-HchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCccc
Q 014622 10 KPEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKE 88 (421)
Q Consensus 10 kPe~~s~~IkLqSSDGqiFeVs~eaA~-qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~de 88 (421)
+||.+...|+++ ||++|....-++. .+.++..|+.-.-+..+.-.+--.| ++.+.|+-|+.|+.-.-.
T Consensus 707 h~e~~d~~i~~K--DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~------- 775 (1267)
T KOG0783|consen 707 HEETMDTVIKLK--DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK------- 775 (1267)
T ss_pred CccceeEEEEec--CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch-------
Confidence 466665455555 9998876544332 2333333333222211111122234 779999999999853221
Q ss_pred chhhhhhhcc--CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 014622 89 RKSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (421)
Q Consensus 89 I~eWD~eFLk--~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe 141 (421)
.+|++ -..+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 776 -----~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 776 -----VELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred -----HHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 12222 2345589999999999999999999999988888887665544
No 17
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.30 E-value=8.6 Score=41.22 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=80.1
Q ss_pred cEEEEeCCCCEEEecHHHHHHchHHHHHhhhcCCCCCC---CcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhh
Q 014622 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSK---NYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (421)
Q Consensus 17 ~IkLqSSDGqiFeVs~eaA~qS~tIr~mLed~g~g~se---~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD 93 (421)
.|.|. .=|.+..+..--+.||+.+..|....-..+.- .-.||=| +|+-+.|.-++-=+.+..
T Consensus 71 Dv~l~-alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE------------- 135 (488)
T KOG4682|consen 71 DVILE-ALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE------------- 135 (488)
T ss_pred ceehh-hccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh-------------
Confidence 44443 34677788888888888888877543221111 1235666 788888887665443322
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 014622 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL 158 (421)
Q Consensus 94 ~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~ 158 (421)
+.++.+.+..++.||.+|...+|++-|...+-..| +|+-+..++...+-+-.|.-.+-.
T Consensus 136 ---veI~l~dv~gvlAaA~~lqldgl~qrC~evMie~l---spkta~~yYea~ckYgle~vk~kc 194 (488)
T KOG4682|consen 136 ---VEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL---SPKTACGYYEAACKYGLESVKKKC 194 (488)
T ss_pred ---eeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc---ChhhhhHhhhhhhhhhhHHHHHHH
Confidence 24688999999999999999999999987765544 555566677666666555444433
No 18
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.37 E-value=19 Score=39.02 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=95.9
Q ss_pred ccEEEEeCCCCEEEecHHHH-HHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCC--CC-------
Q 014622 16 SYIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPG--SS------- 85 (421)
Q Consensus 16 ~~IkLqSSDGqiFeVs~eaA-~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~--~s------- 85 (421)
..|+++-.| ..|...+-++ ..|..++.++- .|+.++....|||. .-++..++.++.|+..-+-.- -.
T Consensus 45 ~DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~ 121 (620)
T KOG4350|consen 45 SDVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDY 121 (620)
T ss_pred cceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHH
Confidence 356777666 6677666554 46889988653 45555556789997 577999999999987755421 00
Q ss_pred ------------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHh
Q 014622 86 ------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153 (421)
Q Consensus 86 ------------~deI~eWD~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEE 153 (421)
...++++-.+.+ ..+.+|-++.||.+.+++.|.++||.. ..+.+.|+-.--+.. -++.+-
T Consensus 122 LslAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mf-----mDrnA~~lL~~~sFn-~LSk~s 193 (620)
T KOG4350|consen 122 LSLAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMF-----MDRNADQLLEDPSFN-RLSKDS 193 (620)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHH-----HhcCHHhhhcCcchh-hhhHHH
Confidence 112334444443 456688888999999999999999954 466677764422221 244554
Q ss_pred hhccc-cccCCchhHHHHHHH
Q 014622 154 KLEPL-KNTTDDPRIRLLNRL 173 (421)
Q Consensus 154 EeEi~-k~~~~dP~i~~ln~l 173 (421)
.+|++ +.-++.|-...++-+
T Consensus 194 L~e~l~RDsFfApE~~IFlAv 214 (620)
T KOG4350|consen 194 LKELLARDSFFAPELKIFLAV 214 (620)
T ss_pred HHHHHhhhcccchHHHHHHHH
Confidence 44444 345778887776654
No 19
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=54.07 E-value=5.7 Score=32.37 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=51.8
Q ss_pred CCCEEEecHHHHHHc--hHHHHHhhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-cCCCCCcccchhhhhhhcc
Q 014622 24 DGSIQQVEQEVAMFC--PLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (421)
Q Consensus 24 DGqiFeVs~eaA~qS--~tIr~mLed~--g~g~se~~~IPLP~nVsS~ILkKIIEYCe~H-k~~~~s~deI~eWD~eFLk 98 (421)
-|+.|.++.+.+..- +.+..++... .........+=+ +-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 589999999998732 4455555432 111113445555 58999999999999995 2111
Q ss_pred CChHHHHHHHhhcccCCCchH-HHHH
Q 014622 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (421)
Q Consensus 99 ~D~e~LfELI~AAnYLdIk~L-LDL~ 123 (421)
.+...+-.|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 123446778889999999988 5543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=52.08 E-value=8.5 Score=44.85 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 014622 203 DDLLQFI 209 (421)
Q Consensus 203 d~ll~fi 209 (421)
++.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 21
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.10 E-value=12 Score=41.81 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=19.4
Q ss_pred ccccccCCCCCCc---CChHHHHHHhHHHHHHHHHhcCChhHHHH
Q 014622 287 RKVDFDDVDIDDE---IDPALKEKLDREVEDFARRLNSDWPERMQ 328 (421)
Q Consensus 287 ~~~~~~~~~~~~~---~d~~~~~~~~reve~f~~~l~~~~~e~~~ 328 (421)
|-+.+.|.+.++. ++-.+-++.-+=+-+| +.||-+-+=+.|
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~-~~lnpdtE~k~~ 193 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVDF-KKLNPDTEFKLQ 193 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHhh-hccCCCchhhhh
Confidence 3355655555443 3323333333333333 667777655444
No 22
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=43.49 E-value=35 Score=35.37 Aligned_cols=90 Identities=8% Similarity=0.103 Sum_probs=59.9
Q ss_pred CEEEecHHHHHH-chHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCChHHH
Q 014622 26 SIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRL 104 (421)
Q Consensus 26 qiFeVs~eaA~q-S~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD~eFLk~D~e~L 104 (421)
+.|..+...+.. .++++..+...-.+.....+|+|.+.-+-.|++=+++|++... | .++.+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---------p-------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---------P-------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---------C-------cCCcCcE
Confidence 558888887754 6788877643100111244566643456677777777776611 1 2466777
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHHH
Q 014622 105 CELTSAADSLQLKPLVDLTSRALARII 131 (421)
Q Consensus 105 fELI~AAnYLdIk~LLDL~ck~VA~~I 131 (421)
..|+.-|+||+|++|++.|..++...+
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 889999999999999999988885543
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.41 E-value=27 Score=33.14 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 014622 105 CELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (421)
Q Consensus 105 fELI~AAnYL--dIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (421)
..+..|||.- +|..|..++++. -|.+.++|++.||||+||.
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 3444566543 666677766653 3899999999999999873
No 24
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=36.14 E-value=31 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 014622 307 KLDREVEDFARRLNSDWPERMQEILS 332 (421)
Q Consensus 307 ~~~reve~f~~~l~~~~~e~~~~~~~ 332 (421)
.||.+|-+|.+..-..|+-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 47788999999999999999999885
No 25
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=34.98 E-value=13 Score=33.67 Aligned_cols=120 Identities=21% Similarity=0.310 Sum_probs=12.0
Q ss_pred CCCEEEecHHHHHHchHHHHHhhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhccCCCCCcccchhhhhhhccCChHH
Q 014622 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (421)
Q Consensus 24 DGqiFeVs~eaA~qS~tIr~mLed~g~g~se~~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s~deI~eWD~eFLk~D~e~ 103 (421)
||+.|.|...+...-+.|.+.+.- ...+| .+.++++.++++|++.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~~---------~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQL---------ASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHHH---------HHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 677777777777666666554321 22356 57777777777776543 334
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhccccccCCchhHHHHHHHHHHHH
Q 014622 104 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (421)
Q Consensus 104 LfELI~AAnYLdIk~LLDL~ck~VA~~IkGK-----TpEEIRe~FgI~nD~TpEEEeEi~k~~~~dP~i~~ln~lyak~~ 178 (421)
.++|+..|--...-+|-.++++.+|-..+.- -.--||++|.-- .++- ..-++ -.|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~~-~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPSK-QQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-cchHH------HHHHHHHHHHHHHH
Confidence 5778888877777777777777666433321 133445444433 1110 01111 13556777777666
Q ss_pred HHHHH
Q 014622 179 KELKE 183 (421)
Q Consensus 179 ~el~~ 183 (421)
.|+-.
T Consensus 121 ~eI~~ 125 (135)
T PF07928_consen 121 NEIFS 125 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 26
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=34.10 E-value=18 Score=41.64 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHH-HhcCChhHHHHHHHhc
Q 014622 306 EKLDREVEDFAR-RLNSDWPERMQEILSL 333 (421)
Q Consensus 306 ~~~~reve~f~~-~l~~~~~e~~~~~~~~ 333 (421)
+.|-+++.+-.| -||..|.+|.++++..
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~ 539 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTE 539 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667666554 5899999999988653
No 27
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=31.76 E-value=50 Score=29.93 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=19.1
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhccccc--cCCch
Q 014622 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKN--TTDDP 165 (421)
Q Consensus 130 ~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~--~~~dP 165 (421)
...|.|.+|-++++|++...++||-.+.-+. ..+||
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 4568999999999999998999887765443 23466
No 28
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=26.18 E-value=38 Score=30.78 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhcCCCCccceeeccCCCccccchhhhhhcCCCCCCCC
Q 014622 308 LDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYAKDQIRSGNDFVPSD 368 (421)
Q Consensus 308 ~~reve~f~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (421)
|||=++...+++|+.||.+=.-+-.+-+|-+| +.+..||+.+++-.+.|......+|.+
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P--~i~lrdG~~h~f~k~ELe~L~~~lp~~ 59 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKP--SIILRDGSRHRFDKEELERLAEILPEY 59 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCC--eEEecCCCEEEEcHHHHHHHHHhCCHH
Confidence 57778888999999998765545555556555 456668999999997777766666644
No 29
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=34 Score=38.33 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=7.4
Q ss_pred HcCCCCCCChHhhhcccc
Q 014622 142 IFHLPDDLTEEEKLEPLK 159 (421)
Q Consensus 142 ~FgI~nD~TpEEEeEi~k 159 (421)
.+...+|-..||.-.-+.
T Consensus 24 ~~d~esded~e~s~~k~e 41 (665)
T KOG2422|consen 24 ANDMESDEDTEESGQKRE 41 (665)
T ss_pred hccccccccchhcccccc
Confidence 344444444444333333
No 30
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.95 E-value=84 Score=23.81 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.4
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccccCCchhHHHHHHHHHHHHHHHHHH
Q 014622 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 184 (421)
Q Consensus 132 kGKTpEEIRe~FgI~nD~TpEEEeEi~k~~~~dP~i~~ln~lyak~~~el~~~ 184 (421)
-|-|.+|||+++.+.++ .+|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 38999999999988654 2333444556667788887665
No 31
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=22.24 E-value=74 Score=23.35 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHh
Q 014622 306 EKLDREVEDFARRLNSDWPERMQEILS 332 (421)
Q Consensus 306 ~~~~reve~f~~~l~~~~~e~~~~~~~ 332 (421)
++||+-+|+|.++.+-.| |||..-|
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S 27 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQES 27 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999887 6664433
No 32
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=22.19 E-value=49 Score=30.52 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.7
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 014622 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (421)
Q Consensus 107 LI~AAnYLdIk~LLDL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (421)
|+.||..|++.. .+|.|-..+.+++.|||++++.
T Consensus 131 l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 131 LILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 888888888876 2455678899999999986553
No 33
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=20.39 E-value=34 Score=32.04 Aligned_cols=8 Identities=38% Similarity=0.227 Sum_probs=0.0
Q ss_pred ChHhhhcc
Q 014622 150 TEEEKLEP 157 (421)
Q Consensus 150 TpEEEeEi 157 (421)
|+||.+.+
T Consensus 2 ~eEEl~rr 9 (154)
T PF06375_consen 2 DEEELERR 9 (154)
T ss_dssp --------
T ss_pred CHHHHHHH
Confidence 44444443
No 34
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.28 E-value=2.4e+02 Score=30.61 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=72.2
Q ss_pred CEEEecHHHHHHchHHHHHhhhcCCCCCCC---cccccCCCCCHHHHHHHHHHHHhccCCCCC-----------------
Q 014622 26 SIQQVEQEVAMFCPLICQEVIQKGMGSSKN---YAISLPQRVNPAMLSLILDYCRFHQVPGSS----------------- 85 (421)
Q Consensus 26 qiFeVs~eaA~qS~tIr~mLed~g~g~se~---~~IPLP~nVsS~ILkKIIEYCe~Hk~~~~s----------------- 85 (421)
..+.+...++..+...+.|+...-..++.+ ....|| +....+.+.++.|+..|+.+.+-
T Consensus 301 ~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 347788888888888988876543332223 345678 78899999999999999975310
Q ss_pred --------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 014622 86 --------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (421)
Q Consensus 86 --------~deI~eWD~eFLk~D~e~LfELI~AAnYLdIk~LLDL~ck~VA~~Ik 132 (421)
...+..| .+| +|.-.+++++.-|.-+....|-.++...+|+.+.
T Consensus 380 dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 380 DRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1123445 222 3445578888888888888888888888888665
No 35
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.16 E-value=34 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=29.2
Q ss_pred hhhhhccceeecCcchhHHHHHHHHHhhhhhhhhcCcccc
Q 014622 379 MLTEGVCGIYRSSKGTKFLQASLALLSKLVPACLEGKFSS 418 (421)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (421)
.+.=.+||.|+...=+... ...-..++.+-+|.+|+..-
T Consensus 42 h~~C~~CG~y~~~~V~~l~-epIDVY~~wiD~~~eg~i~~ 80 (99)
T PRK14892 42 IITCGNCGLYTEFEVPSVY-DEVDVYNKFIDLYLEGKIEI 80 (99)
T ss_pred eEECCCCCCccCEECCccc-cchhhHHHHHHHHHhcCCCc
Confidence 4566789999887655444 44678899999999998753
Done!