BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014624
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 62/272 (22%)
Query: 120 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 179
S+D S ++ A+P+ I + KKLDL +N++ LP
Sbjct: 20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK---------------------- 55
Query: 180 ALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELR 237
A RL +L L L N L +LP I L +L+ L V N L+ LP Q +L ELR
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 238 VDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC 297
+D N+LK+LP P SL+ L L + +NEL+S+P+ +
Sbjct: 116 LDRNQLKSLP----------------------PRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 298 FA-TTLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLR 354
T+L ++ + NN L+ +P + L L+ L + NNQ++ +P+ +F L +L++L+
Sbjct: 154 DKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 355 VQENPLEVPPRNIVEMGAQAVVQYMADLVEKR 386
+QENP + I+ YMA ++K+
Sbjct: 212 LQENPWDCTCNGII---------YMAKWLKKK 234
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 7/150 (4%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQIS 175
S ++D R +VPA I ++ + L LH N+I +L P L++L L L NQ+
Sbjct: 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77
Query: 176 ALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTIGQCSSL 233
ALPV L +L LDLG+N L+ LP ++ L+ LK+L + N L ELP I + + L
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137
Query: 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRY 263
L +D N+LK++P G L L+ Y
Sbjct: 138 THLALDQNQLKSIPH--GAFDRLSSLTHAY 165
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 26/158 (16%)
Query: 140 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLS 198
S +D + R +P I ++YL NQI+ L P L+ L+EL LGSN L
Sbjct: 20 SGTTVDCRSKRHASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLG 77
Query: 199 SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAV-GKIHTLE 257
+LP +G SL +L V L + N+L LP AV ++ L+
Sbjct: 78 ALP--VGVFDSLTQLTV--------------------LDLGTNQLTVLPSAVFDRLVHLK 115
Query: 258 VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES 295
L + N + +LP + L+ L L + N+L+S+P
Sbjct: 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 56/209 (26%)
Query: 167 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPH 225
+D R + +++P + ++ L L N ++ L P SLI+LK+L + +N L LP
Sbjct: 24 VDCRSKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP- 80
Query: 226 TIGQCSSLRELRV---DYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLREL 282
+G SL +L V N+L LP AV L L+EL
Sbjct: 81 -VGVFDSLTQLTVLDLGTNQLTVLPSAV----------------------FDRLVHLKEL 117
Query: 283 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342
+ N+L LPR I L L L + NQ++ +P
Sbjct: 118 FMCCNKLTE-------------------------LPRGIERLTHLTHLALDQNQLKSIPH 152
Query: 343 -SFRMLSRLRVLRVQENPLEVPPRNIVEM 370
+F LS L + NP + R+I+ +
Sbjct: 153 GAFDRLSSLTHAYLFGNPWDCECRDIMYL 181
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 96/186 (51%), Gaps = 29/186 (15%)
Query: 180 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRV 238
+ L + L LG N L + ++ L +L LI+ N L+ LP+ + + ++L+EL +
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 239 DYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESL 296
N+L++LP+ V K+ L L++ +N ++ LP L++L ELD+S+N+L+S+PE +
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 297 CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRV 355
L L++L + NQ++ +PD F L+ L+ + +
Sbjct: 177 ------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 356 QENPLE 361
+NP +
Sbjct: 213 HDNPWD 218
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVYLD 168
++ +L++L L L+ N++ ++P L++LK+L L N++ LPD + D L +L YL+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 169 LRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHT 226
L NQ+ +LP +L L ELDL N L SLP+ + L LK L + N L+ +P
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 227 I 227
+
Sbjct: 200 V 200
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 6/191 (3%)
Query: 135 IGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLG 193
I L +++ L L N++ ++ ++ +L +L YL L GNQ+ +LP +L L+EL L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 194 SNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAV- 250
N L SLPD + L +L L + N L+ LP + + ++L L +D N+L++LPE V
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 251 GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 309
K+ L+ LS+ N +K +P L+SL + + N + + + + + + G
Sbjct: 178 DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 237
Query: 310 NFADLRALPRS 320
F L P S
Sbjct: 238 VFGYLNLDPDS 248
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 207 LISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNI 266
L S+ ++I +D++ + I ++R L + N+L + A+ ++ L L + N +
Sbjct: 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQL 97
Query: 267 KQLPT-TMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRALPRSIGN- 323
+ LP L++L+EL + N+L+S+P+ + T L + + +N L++LP+ + +
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN--QLQSLPKGVFDK 155
Query: 324 LEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIVE 369
L L LD+ NNQ++ LP+ F L++L+ L + +N L+ P + +
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 82 SLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSS 140
++ + +G ++++ Q K +D++ P I + LDL + + AT GL+
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSV---PSGI--PADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 141 LKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLS 198
L L+L N++ L + DL L L L NQ+++LP+ L +L++L LG N L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 199 SLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALPEA----VGK 252
SLP + L LK+L + TN L+ +P + ++L+ L + N+L+++P +GK
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 253 IHTLEVLSVRYN 264
+ T+ + +++
Sbjct: 181 LQTITLFGNQFD 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 167 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH 225
+D +G + ++P + E+LDL S L++L D + L L L ++ N L+ L
Sbjct: 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 226 TI-GQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLREL 282
+ + L L + N+L +LP V + L+ L + N +K LP+ L+ L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 283 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342
++ N+L+S+P + L L+ L +S NQ++ +P
Sbjct: 137 RLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQLQSVPH 172
Query: 343 -SFRMLSRLRVLRVQENPLEV 362
+F L +L+ + + N +
Sbjct: 173 GAFDRLGKLQTITLFGNQFDC 193
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 40/274 (14%)
Query: 98 QNKLMDNIEWLPDSI-GKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-EL 154
+NK I PD + G +L LDLS N AVP G S L+ L L +N EL
Sbjct: 278 ENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 155 P-DSIGDLLSLVYLDLRGNQISA-LPVALSRL-VRLEELDLGSNNLSS--LPD-SIGSLI 208
P D++ + L LDL N+ S LP +L+ L L LDL SNN S LP+
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 209 SLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267
+L++L ++ N ++P T+ CS L L + +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---------------------- 432
Query: 268 QLPTTMSSLSSLRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRA-LPRSIGNLE 325
+P+++ SLS LR+L + N LE +P+ L + TL + + +F DL +P + N
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCT 490
Query: 326 MLEELDISNNQIRV-LPDSFRMLSRLRVLRVQEN 358
L + +SNN++ +P L L +L++ N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 29/197 (14%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGG---LSSLKKLDLHANRIIE-------LPDSIGD 160
S+G S L L++S N + P + G L+SL+ LDL AN I L D G+
Sbjct: 121 SLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 161 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 220
L +L + GN+IS V +SR V LE LD+ SNN S+ +G +L+ L + N L
Sbjct: 180 L---KHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 221 E-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK------QLPTTM 273
+ I C+ L+ L + N+ VG I L + S++Y ++ ++P +
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQF------VGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289
Query: 274 S-SLSSLRELDVSFNEL 289
S + +L LD+S N
Sbjct: 290 SGACDTLTGLDLSGNHF 306
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 134/326 (41%), Gaps = 79/326 (24%)
Query: 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLH 147
K ++L LQN +P ++ S LVSL LS N + +P+++G LS L+ L L
Sbjct: 393 KNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 148 ANRI-IELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELDLGSNNLSS-LPDSI 204
N + E+P + + +L L L N ++ +P LS L + L +N L+ +P I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 205 GSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKA-LPEAV----GKIHT--- 255
G L +L L + N +P +G C SL L ++ N +P A+ GKI
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 256 -----------------------LEVLSVRYNNIKQLPT-----------------TMSS 275
LE +R + +L T T +
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 276 LSSLRELDVSFNELES-VPESLCFATTLVKMNIGNN---------FADLRAL-------- 317
S+ LD+S+N L +P+ + L +N+G+N DLR L
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 318 ------PRSIGNLEMLEELDISNNQI 337
P+++ L ML E+D+SNN +
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 116 SSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQ 173
S++ LD+S N + +P IG + L L+L N I +PD +GDL L LDL N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 174 ISA-LPVALSRLVRLEELDLGSNNLSS 199
+ +P A+S L L E+DL +NNLS
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSG 718
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 82 SLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSS 140
++ + +G ++++ Q K +D++ P I + LDL + + AT GL+
Sbjct: 6 TVTGCTCNEGKKEVDCQGKSLDSV---PSGI--PADTEKLDLQSTGLATLSDATFRGLTK 60
Query: 141 LKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLS 198
L L+L N++ L + DL L L L NQ+++LP+ L +L++L LG N L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 199 SLPDSI-GSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALPEA----VGK 252
SLP + L LK+L + TN L+ +P + ++L+ L + N+L+++P +GK
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 253 IHTLEVLSVRYN 264
+ T+ + +++
Sbjct: 181 LQTITLFGNQFD 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 167 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH 225
+D +G + ++P + E+LDL S L++L D + L L L ++ N L+ L
Sbjct: 19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 226 TI-GQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLREL 282
+ + L L + N+L +LP V + L+ L + N +K LP+ L+ L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 283 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342
++ N+L+S+P + L L+ L +S NQ++ +P
Sbjct: 137 RLNTNQLQSIPAG------------------------AFDKLTNLQTLSLSTNQLQSVPH 172
Query: 343 -SFRMLSRLRVLRVQENPLEV 362
+F L +L+ + + N +
Sbjct: 173 GAFDRLGKLQTITLFGNQFDC 193
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 40/274 (14%)
Query: 98 QNKLMDNIEWLPDSI-GKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-EL 154
+NK I PD + G +L LDLS N AVP G S L+ L L +N EL
Sbjct: 275 ENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 155 P-DSIGDLLSLVYLDLRGNQISA-LPVALSRL-VRLEELDLGSNNLSS--LPD-SIGSLI 208
P D++ + L LDL N+ S LP +L+ L L LDL SNN S LP+
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 209 SLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267
+L++L ++ N ++P T+ CS L L + +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---------------------- 429
Query: 268 QLPTTMSSLSSLRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRA-LPRSIGNLE 325
+P+++ SLS LR+L + N LE +P+ L + TL + + +F DL +P + N
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCT 487
Query: 326 MLEELDISNNQIRV-LPDSFRMLSRLRVLRVQEN 358
L + +SNN++ +P L L +L++ N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGG---LSSLKKLDLHANRIIE-------LPDSIGD 160
S+G S L L++S N + P + G L+SL+ LDL AN I L D G+
Sbjct: 118 SLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 161 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 220
L +L + GN+IS V +SR V LE LD+ SNN S+ +G +L+ L + N L
Sbjct: 177 L---KHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 221 E-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNI-KQLPTTMS-SLS 277
+ I C+ L+ L + N+ P + +L+ LS+ N ++P +S +
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 278 SLRELDVSFNEL 289
+L LD+S N
Sbjct: 292 TLTGLDLSGNHF 303
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 134/326 (41%), Gaps = 79/326 (24%)
Query: 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLH 147
K ++L LQN +P ++ S LVSL LS N + +P+++G LS L+ L L
Sbjct: 390 KNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 148 ANRI-IELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELDLGSNNLSS-LPDSI 204
N + E+P + + +L L L N ++ +P LS L + L +N L+ +P I
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 205 GSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKA-LPEAV----GKIHT--- 255
G L +L L + N +P +G C SL L ++ N +P A+ GKI
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 256 -----------------------LEVLSVRYNNIKQLPT-----------------TMSS 275
LE +R + +L T T +
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 276 LSSLRELDVSFNELES-VPESLCFATTLVKMNIGNN---------FADLRAL-------- 317
S+ LD+S+N L +P+ + L +N+G+N DLR L
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 318 ------PRSIGNLEMLEELDISNNQI 337
P+++ L ML E+D+SNN +
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 116 SSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQ 173
S++ LD+S N + +P IG + L L+L N I +PD +GDL L LDL N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 174 ISA-LPVALSRLVRLEELDLGSNNLSS 199
+ +P A+S L L E+DL +NNLS
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSG 715
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 22/302 (7%)
Query: 78 IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIG 136
IK + E +S +L L ++ +E P + L +L +L L NR+ +P
Sbjct: 44 IKTLNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 137 GLSSLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGS 194
GLS+L KLD+ N+I+ L D + DL +L L++ N + + A S L LE+L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 195 NNLSSLP----DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRV-DYNRLKALPEA 249
NL+S+P + LI L+ + N + + ++ + L+ L + + L +
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 250 VGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMN-- 306
L LS+ + N+ +P + L LR L++S+N + ++ S+ L+++
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--LLRLQEI 277
Query: 307 --IGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP 363
+G A + P + L L L++S NQ+ L +S F + L L + NPL
Sbjct: 278 QLVGGQLAVVE--PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335
Query: 364 PR 365
R
Sbjct: 336 CR 337
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 121 LDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALP 178
LDL N + ++P L+SL +L L N++ LP+ + L SL YL+L NQ+ +LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 179 VA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLEELPHTI 227
+L +L+EL L +N L SLPD + L LK L + N L+ +P +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 30/173 (17%)
Query: 194 SNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAV-G 251
S +S+P I + + L +ETN L+ LP+ + + +SL +L + N+L++LP V
Sbjct: 16 SQGRTSVPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 252 KIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNN 310
K+ +L L++ N ++ LP L+ L+EL ++ N+L+S+P+ +
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV-------------- 119
Query: 311 FADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEV 362
L L++L + NQ++ +PD F L+ L+ + + +NP +
Sbjct: 120 ----------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 12/200 (6%)
Query: 144 LDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS 203
L+L + + + PD L L + + + LP + LE L L N L +LP S
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 204 IGSLISLKKL-IVETNDLEELPHTIGQCSS---------LRELRVDYNRLKALPEAVGKI 253
I SL L++L I +L ELP + + L+ LR+++ +++LP ++ +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDV-SFNELESVPESLCFATTLVKMNIGNNFA 312
L+ L +R + + L + L L ELD+ L + P L ++ I + +
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL-ILKDCS 264
Query: 313 DLRALPRSIGNLEMLEELDI 332
+L LP I L LE+LD+
Sbjct: 265 NLLTLPLDIHRLTQLEKLDL 284
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 48/187 (25%)
Query: 96 NLQNKLMD--NIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHA----- 148
+LQ+ +D + LPD+ + + L +L L+ N + A+PA+I L+ L++L + A
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 149 ----------------------------NRIIELPDSIGDLLSLVYLDLRGNQISALPVA 180
I LP SI +L +L L +R + +SAL A
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 181 LSRLVRLEELDL-GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVD 239
+ L +LEELDL G L + P G LK+LI++ CS+L L +D
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK------------DCSNLLTLPLD 272
Query: 240 YNRLKAL 246
+RL L
Sbjct: 273 IHRLTQL 279
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 16/202 (7%)
Query: 165 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELP 224
V L+LR + P RL L+ + + L LPD+ L+ L + N L LP
Sbjct: 84 VALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALP 143
Query: 225 HTIGQCSSLRELRVDY-NRLKALPEAVGKIHT---------LEVLSVRYNNIKQLPTTMS 274
+I + LREL + L LPE + L+ L + + I+ LP +++
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203
Query: 275 SLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEEL---D 331
+L +L+ L + + L ++ ++ L ++++ A LR P G L+ L D
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA-LRNYPPIFGGRAPLKRLILKD 262
Query: 332 ISNNQIRVLPDSFRMLSRLRVL 353
SN + LP L++L L
Sbjct: 263 CSN--LLTLPLDIHRLTQLEKL 282
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 128 IVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLV 185
+ VPA+I + + L+L N I + D+ L L L L N + + V A + L
Sbjct: 26 LAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 186 RLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRV-DYNR 242
L L+L N L+++P +S L++L + N +E +P + + SLR L + + R
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 243 LKALPEAVGK-IHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFAT 300
L+ + EA + + L L++ N+K +P +++L L EL++S N L+ + P S T
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 301 TLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQEN 358
+L K+ + + A + + R + +L+ LEEL++S+N + LP D F L RL + + N
Sbjct: 203 SLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 359 PLEV 362
P
Sbjct: 261 PWHC 264
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE 153
L L L+ IE + L SL +L+L +NR+ VP LS L++L L N I
Sbjct: 64 LQLSKNLVRKIE--VGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 154 LPD--------------------------SIGDLLSLVYLDLRGNQISALPVALSRLVRL 187
+P + L++L YL+L + +P L+ LVRL
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRL 180
Query: 188 EELDLGSNNLSSL-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRV 238
EEL+L N L + P S L SL+KL +E N ++L SL EL +
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNL 233
Query: 239 DYNRLKALPEAV-GKIHTLEVLSVRYN 264
+N L +LP + +H LE + + +N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 320 SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPP 364
+ L L L++ +N++ +P +F LS+LR L ++ NP+E P
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%)
Query: 120 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 179
+LDLS +I + A I L +L L+ N + ELP I +L +L LDL N++++LP
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 180 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE 222
L +L+ N +++LP G+L +L+ L VE N LE+
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
+I K L L L+ N + +PA I LS+L+ LDL NR+ LP +G L Y
Sbjct: 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301
Query: 171 GNQISALPVALSRLVRLEELDLGSNNL 197
N ++ LP L L+ L + N L
Sbjct: 302 DNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%)
Query: 125 ENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRL 184
ENR+V + LDL +I + +I L L L GN ++ LP + L
Sbjct: 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNL 269
Query: 185 VRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244
L LDL N L+SLP +GS LK N + LP G +L+ L V+ N L+
Sbjct: 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%)
Query: 149 NRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLI 208
NR++ DS D LDL QI + + + L L L N+L+ LP I +L
Sbjct: 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLS 270
Query: 209 SLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ 268
+L+ L + N L LP +G C L+ N + LP G + L+ L V N +++
Sbjct: 271 NLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 190 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249
LDL + + ++ +I L +L + N L ELP I S+LR L + +NRL +LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 290
+G L+ N + LP +L +L+ L V N LE
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 309
+ K L L + N++ +LP + +LS+LR LD+S N L S
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------------------ 284
Query: 310 NFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 361
LP +G+ L+ +N + LP F L L+ L V+ NPLE
Sbjct: 285 -------LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 12/230 (5%)
Query: 139 SSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 196
++ + L+LH N+I I +S L L L L N I + + A + L L L+L N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 197 LSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRV-DYNRLKALPE-AVGK 252
L+++P+ +S LK+L + N +E +P + + SLR L + + RL + E A
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 253 IHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNF 311
+ L L++ N++++P ++ L L ELD+S N L ++ P S L K+ +
Sbjct: 184 LSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-- 240
Query: 312 ADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENP 359
+ ++ + R + NL+ L E+++++N + +LP D F L L + + NP
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 84 IEVSSKKGTRDLNLQNKLMDNIEWLPD-SIGKLSSLVSLDLSENRIVAVPA-TIGGLSSL 141
IE+ + G +LN + + +P+ + LS L L L N I ++P+ + SL
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 142 KKLDL-HANRIIELPDSIGDLLS-LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSS 199
++LDL R+ + + + LS L YL+L + +P L+ L++L+ELDL N+LS+
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221
Query: 200 L-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAV 250
+ P S L+ L+KL ++E N + L SL E+ + +N L LP +
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-------QSLVEINLAHNNLTLLPHDL 274
Query: 251 -GKIHTLEVLSVRYN 264
+H LE + + +N
Sbjct: 275 FTPLHHLERIHLHHN 289
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 126/244 (51%), Gaps = 14/244 (5%)
Query: 128 IVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLV 185
+ VPA+I + + L+L N I + D+ L L L L N + + V A + L
Sbjct: 26 LAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 186 RLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELP-HTIGQCSSLRELRV-DYNR 242
L L+L N L+++P +S L++L + N +E +P + + SLR L + + R
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 243 LKALPEAVGK-IHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFAT 300
L+ + EA + + L L++ N+K +P +++L L EL++S N L+ + P S T
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLT 202
Query: 301 TLVKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQEN 358
+L K+ + + A + + R + +L+ LEEL++S+N + LP D F L RL + + N
Sbjct: 203 SLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 359 PLEV 362
P
Sbjct: 261 PWHC 264
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE 153
L L L+ IE + L SL +L+L +NR+ VP LS L++L L N I
Sbjct: 64 LQLSKNLVRKIE--VGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 154 LPD--------------------------SIGDLLSLVYLDLRGNQISALPVALSRLVRL 187
+P + L++L YL+L + +P L+ LVRL
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRL 180
Query: 188 EELDLGSNNLSSL-PDSIGSLISLKKL--------IVETNDLEELPHTIGQCSSLRELRV 238
EEL+L N L + P S L SL+KL +E N ++L SL EL +
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNL 233
Query: 239 DYNRLKALPEAV-GKIHTLEVLSVRYN 264
+N L +LP + +H LE + + +N
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 320 SIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPP 364
+ L L L++ +N++ +P +F LS+LR L ++ NP+E P
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 112 IGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDL 169
G SS L+L N++ ++P + L+ L KL L N+I LPD + D L+ L L L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83
Query: 170 RGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDLE 221
N++ +LP +L +L+EL L +N L S+PD I L SL+K+ + TN +
Sbjct: 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 189 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALP 247
E+ S L+S+P I S S +L +E+N L+ LPH + + + L +L + N++++LP
Sbjct: 11 EIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 248 EAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFA--TTLV 303
+ V K+ L +L + N ++ LP L+ L+EL + N+L+SVP+ + F T+L
Sbjct: 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQ 127
Query: 304 KMNIGNNFADLRALPR 319
K+ + N D + PR
Sbjct: 128 KIWLHTNPWDC-SCPR 142
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 163 SLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETNDL 220
S L+L N++ +LP +L +L +L L N + SLPD + L L L + N L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 221 EELPHTI-GQCSSLRELRVDYNRLKALPEAV 250
+ LP+ + + + L+EL +D N+LK++P+ +
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 229 QCS-SLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSF 286
+CS S E+R + L ++P + T L + N ++ LP L+ L +L +S
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATR--LELESNKLQSLPHGVFDKLTQLTKLSLSQ 61
Query: 287 NELESVPESLCFA--TTLVKMNIGNNFADLRALPRSI-GNLEMLEELDISNNQIRVLPDS 343
N+++S+P+ + F T L + + N L++LP + L L+EL + NQ++ +PD
Sbjct: 62 NQIQSLPDGV-FDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118
Query: 344 -FRMLSRLRVLRVQENPLEVP-PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
F L+ L+ + + NP + PR + Y++ + K K Q
Sbjct: 119 IFDRLTSLQKIWLHTNPWDCSCPR----------IDYLSRWLNKNSQKEQ 158
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 51/338 (15%)
Query: 71 DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA 130
D E +S L E+S +NLQ NI ++ S L LDL+ +
Sbjct: 239 DDEDISPAVFEGLCEMS----VESINLQKHYFFNIS--SNTFHCFSGLQELDLTATHLSE 292
Query: 131 VPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN--QISALPVALSRLVRL 187
+P+ + GLS+LKKL L AN+ L S + SL +L ++GN ++ L L L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 188 EELDLGSNNLSSLPDSIG----SLISLKKLIVETND-LEELPHTIGQCSSLRELRVDYNR 242
ELDL +++ + D +L L+ L + N+ L +C L L + + R
Sbjct: 353 RELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 243 LKA--LPEAVGKIHTLEVLSVRYN-------------------NIK---------QLPTT 272
LK +H L+VL++ ++ N++ Q +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 273 MSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLE--EL 330
+ +L L L +SF +L S+ + A T +KM + + R SI L L+ L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQH---AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528
Query: 331 DISNNQIR-VLPDSFRMLSRLRVLRVQENPLEVPPRNI 367
++++N I +LP +LS+ R + +++NPL+ NI
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 40/260 (15%)
Query: 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISAL 177
L L +S N++ +P + S LK +D+ N + +LPD SL ++ NQ+ L
Sbjct: 133 LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEEL 188
Query: 178 PVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELR 237
P L L L + +N+L LPD +SL+ ++ N LEELP + L +
Sbjct: 189 P-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIY 243
Query: 238 VDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC 297
D N LK LP+ +LE L+VR N + LP SL+ L + F+ L +P +L
Sbjct: 244 ADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 300
Query: 298 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP----------DSFRML 347
+ N L LP S LEEL++SNN++ LP SF L
Sbjct: 301 YLNA-----SSNEIRSLCDLPPS------LEELNVSNNKLIELPALPPRLERLIASFNHL 349
Query: 348 SR-------LRVLRVQENPL 360
+ L+ L V+ NPL
Sbjct: 350 AEVPELPQNLKQLHVEYNPL 369
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 84/169 (49%), Gaps = 21/169 (12%)
Query: 179 VALSRLV-----RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSL 233
+A+SRL + EL+L + LSSLP+ L S L+ N L ELP SL
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPEL---PQSL 113
Query: 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 293
+ L VD N LKAL + LE L V N +++LP +S S L+ +DV N L+ +P
Sbjct: 114 KSLLVDNNNLKALSDLPP---LLEYLGVSNNQLEKLPELQNS-SFLKIIDVDNNSLKKLP 169
Query: 294 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342
+ +L + GNN L LP + NL L + NN ++ LPD
Sbjct: 170 D---LPPSLEFIAAGNN--QLEELPE-LQNLPFLTAIYADNNSLKKLPD 212
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 197 LSSLPDSIGSLIS--------------LKKLIVETNDLEELPHTIGQCSSLRELRVDYNR 242
L LP S+ SL+ L+ L V N LE+LP + S L+ + VD N
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS 164
Query: 243 LKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTL 302
LK LP+ +LE ++ N +++LP + +L L + N L+ +P+ +L
Sbjct: 165 LKKLPDLPP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD---LPLSL 217
Query: 303 VKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358
+ GNN L LP + NL L + NN ++ LPD + L L V++N
Sbjct: 218 ESIVAGNNI--LEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDN 267
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 176
SL L++S N+++ +PA L L H + ELP ++ L + Y LR +
Sbjct: 318 SLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQL-HVEYNPLR--EFPD 374
Query: 177 LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLR 234
+P ++ E+L + S+ L+ +P+ +L K+L VETN L E P LR
Sbjct: 375 IPESV------EDLRMNSH-LAEVPELPQNL---KQLHVETNPLREFPDIPESVEDLR 422
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 116 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS 175
S L L + N++ ++P GL L D N++ LP +L L + NQ++
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSD---NQLASLPALPSELCKLWAYN---NQLT 174
Query: 176 ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETNDLEELPHTIGQCSSLR 234
+LP+ S L +EL + N L+SLP +L S L KL N L LP S L+
Sbjct: 175 SLPMLPSGL---QELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP---ALPSGLK 224
Query: 235 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPE 294
EL V NRL +LP ++ L V R ++ LP+ + SLS R N+L +PE
Sbjct: 225 ELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR------NQLTRLPE 278
Query: 295 SLCFATTLVKMNIGNN 310
SL ++ +N+ N
Sbjct: 279 SLIHLSSETTVNLEGN 294
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 36/235 (15%)
Query: 167 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHT 226
L++ GNQ+++LPV L+ EL + SN L+ LP L KL + N L LP
Sbjct: 86 LEVSGNQLTSLPVLPPGLL---ELSIFSNPLTHLPALPSGLC---KLWIFGNQLTSLPVL 139
Query: 227 IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSF 286
L+EL V N+L +LP ++ L + + ++ LP S L+EL VS
Sbjct: 140 ---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSD 190
Query: 287 NELESVPESLCFATTLVKMNIGNN-FADLRALPRSIGNL--------------EMLEELD 331
N+L S+P + L K+ NN L ALP + L L+EL
Sbjct: 191 NQLASLP---TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELM 247
Query: 332 ISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVEKR 386
+S N++ LP + S L L V N L P +++ + ++ V + + +R
Sbjct: 248 VSGNRLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 12/208 (5%)
Query: 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIE 153
L+LQN D E D L L +L L N+I + L L+KL + N ++E
Sbjct: 59 LDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 154 LPDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLK- 211
+P ++ SLV L + N+I +P S L + +++G N L + G+ LK
Sbjct: 117 IPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174
Query: 212 -KLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQL 269
L + L +P + + +L EL +D+N+++A+ E + + L L + +N I+ +
Sbjct: 175 NYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 270 PT-TMSSLSSLRELDVSFNELESVPESL 296
++S L +LREL + N+L VP L
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 116 SSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIG--DLLSLVYLDLRGN 172
SSLV L + +NRI VP GL ++ +++ N + G D L L YL +
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 173 QISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL-----------IVETNDLE 221
+++ +P L L EL L N + ++ + L+ KL ++E L
Sbjct: 183 KLTGIPKDLPE--TLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 222 ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 269
LP +LREL +D N+L +P + + L+V+ + NNI ++
Sbjct: 239 FLP-------TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 36/268 (13%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLS-SLKKLDLHANRIIELPD-------SIGDLL 162
+ G L SL+L+ N+I +PA G + ++ L N++ +P+ S+ +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAI 407
Query: 163 SLVYLDL---RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLIS-LKKLIVETN 218
Y ++ G L + + + ++L +N +S P + S S L + + N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGN 467
Query: 219 DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTM--SSL 276
L E+P N LK E + L + +R+N + +L ++L
Sbjct: 468 XLTEIPK---------------NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Query: 277 SSLRELDVSFNELESVPESLCFATTLVKMNIGN-----NFADLRALPRSIGNLEMLEELD 331
L +D+S+N P ++TL I N LR P I L +L
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
Query: 332 ISNNQIRVLPDSFRMLSRLRVLRVQENP 359
I +N IR + + ++ + VL +++NP
Sbjct: 573 IGSNDIRKVNE--KITPNISVLDIKDNP 598
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 46/214 (21%)
Query: 158 IGDLLSLVYLDLRGNQISALPV--ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 215
+G+ + ++Y+ N + PV +L + +L L+ N L + GS I L L +
Sbjct: 303 VGEKIQIIYIGY--NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNL 360
Query: 216 ETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMS- 274
N + E+P G +E LS +N +K +P
Sbjct: 361 AYNQITEIPANF----------------------CGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 275 -SLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS 333
S+S +D S+NE+ SV G NF L P N + +++S
Sbjct: 399 KSVSVXSAIDFSYNEIGSVD--------------GKNFDPLDPTPFKGIN---VSSINLS 441
Query: 334 NNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRN 366
NNQI P F S L + + N L P+N
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLXGNXLTEIPKN 475
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 34/246 (13%)
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
L S+ KL + ++ + I L +L YL+L GNQI+ + LS LV+L L +G+N +
Sbjct: 43 LESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKI 100
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELP----------------HTIGQCS------SLRE 235
+ + ++ +L +L++L + +++ ++ H + S L
Sbjct: 101 TDIS-ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNY 159
Query: 236 LRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES 295
L V +++K + + + L LS+ YN I+ + + ++SL+SL N++ +
Sbjct: 160 LTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP- 216
Query: 296 LCFATTLVKMNIGNN-FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
+ T L + IGNN DL L NL L L+I NQI + ++ + L++L+ L
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPL----ANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLN 271
Query: 355 VQENPL 360
V N +
Sbjct: 272 VGSNQI 277
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 170
KL SL L + N+ + + L SL+ LDL N + + S D SL YLDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV----ETNDLEELPHT 226
N + + L +LE LD +NL + + +SL+ LI T+
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 227 IGQCSSLRELRVDYNRLKA--LPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELD 283
SSL L++ N + LP+ ++ L L + ++QL PT +SLSSL+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 284 VSFNELESVPESL 296
++ N+L+SVP+ +
Sbjct: 501 MASNQLKSVPDGI 513
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 99 NKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDS 157
N +N +LPD +L +L LDLS+ ++ + P LSSL+ L++ +N++ +PD
Sbjct: 455 NSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512
Query: 158 IGDLLS 163
I D L+
Sbjct: 513 IFDRLT 518
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR-----VQENPL 360
N+ +N LP NL LE LD+S+N+I+ + + LRVL L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDL 184
Query: 361 EVPPRNIVEMGA 372
+ P N ++ GA
Sbjct: 185 SLNPMNFIQPGA 196
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT 134
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 144 LDLHANRIIELPDS-IGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP 201
LDL N+I E+ D +L +L L L N+IS + P A + LV+LE L L N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 DSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 260
+ + +L++L V N++ ++ ++ + + + + N LK+ G ++ LS
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 261 ---VRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRA 316
+ NI +P + SL EL + N++ V SL L K+ G +F + A
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL--GLSFNSISA 230
Query: 317 LPR-SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358
+ S+ N L EL ++NN++ +P ++V+ + N
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 115 LSSLVSLDLSENRIVAVPATIGGLSSLKKLD---LHANRIIELPDSIGDLLSLVYLDLRG 171
L+ ++ ++L N + + G +KKL + I +P + L+ ++LD G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD--G 201
Query: 172 NQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
N+I+ + A L L L +L L N++S+ V+ L PH
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISA---------------VDNGSLANTPH----- 241
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNI 266
LREL ++ N+L +P + ++V+ + NNI
Sbjct: 242 --LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 144 LDLHANRIIELPDS-IGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP 201
LDL N+I E+ D +L +L L L N+IS + P A + LV+LE L L N L LP
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 DSIGSLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 260
+ + +L++L V N++ ++ ++ + + + + N LK+ G ++ LS
Sbjct: 117 EKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 261 ---VRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRA 316
+ NI +P + SL EL + N++ V SL L K+ G +F + A
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL--GLSFNSISA 230
Query: 317 LPR-SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358
+ S+ N L EL ++NN++ +P ++V+ + N
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 115 LSSLVSLDLSENRIVAVPATIGGLSSLKKLD---LHANRIIELPDSIGDLLSLVYLDLRG 171
L+ ++ ++L N + + G +KKL + I +P + L+ ++LD G
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD--G 201
Query: 172 NQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
N+I+ + A L L L +L L N++S+ V+ L PH
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISA---------------VDNGSLANTPH----- 241
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL 269
LREL ++ N+L +P + ++V+ + NNI +
Sbjct: 242 --LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 17/156 (10%)
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
++ +L L+ + LPD++ +++ L++ N + +LP LE LD N L
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITV--LEITQNALISLP---ELPASLEYLDACDNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLE 257
S+LP+ SL K L V+ N L LP + L + D N+L LPE +LE
Sbjct: 113 STLPELPASL---KHLDVDNNQLTXLPEL---PALLEYINADNNQLTXLPELPT---SLE 163
Query: 258 VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 293
VLSVR N + LP SL + LDVS N LES+P
Sbjct: 164 VLSVRNNQLTFLPELPESLEA---LDVSTNLLESLP 196
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 46/185 (24%)
Query: 186 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 245
+ EL L NLSSLPD++ I++ L + N L +
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQITV-------------------------LEITQNALIS 94
Query: 246 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 305
LPE + L+ R + + +LP +SL+ LDV N+L +PE L +
Sbjct: 95 LPELPASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQLTXLPE---LPALLEYI 145
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE---- 361
N NN L LP +LE+L + NNQ+ LP+ + L L V N LE
Sbjct: 146 NADNN--QLTXLPELPTSLEVL---SVRNNQLTFLPE---LPESLEALDVSTNLLESLPA 197
Query: 362 VPPRN 366
VP RN
Sbjct: 198 VPVRN 202
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 30/230 (13%)
Query: 116 SSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLRG 171
SS L+L N++ ++P L+ L KL L +N + + S D SL YLDL
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 172 NQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS 231
N + + L +LE LD +NL + + +SL+ LI ++ HT
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY-----LDISHT----- 136
Query: 232 SLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNEL 289
RV +N + + +LEVL + N+ ++ LP + L +L LD+S +L
Sbjct: 137 ---HTRVAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 290 ESV-PESLCFATTLVKMNIG-NNFADLRALPRSIGNLEMLEELDISNNQI 337
E + P + ++L +N+ NNF L P L L+ LD S N I
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHI 235
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 99 NKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 154
N +N +LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 160 NSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 53/268 (19%)
Query: 139 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLE---------E 189
+SLK L +H + D G S +Y I V+ +R+V +
Sbjct: 273 TSLKALSIHQ----VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328
Query: 190 LDLGSNNLS-SLPDSIGSLISLKKLIVETNDLEEL---PHTIGQCSSLRELRVDYNRLKA 245
LD +N L+ ++ ++ G L L+ LI++ N L+EL Q SL++L + N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN---- 384
Query: 246 LPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 305
SV Y+ K S SL L++S N L C + +
Sbjct: 385 --------------SVSYDEKK---GDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVL 426
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
++ +N ++++P+ + LE L+EL++++NQ++ +PD F L+ L+ + + NP +
Sbjct: 427 DLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 485 PR----------IDYLSRWLNKNSQKEQ 502
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLS---SLKKLDLHANRIIELPDSIGDLL--SLVYLD 168
++ SL LD+S+N V+ G S SL L++ +N L D+I L + LD
Sbjct: 372 QMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNI---LTDTIFRCLPPRIKVLD 427
Query: 169 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETN 218
L N+I ++P + +L L+EL++ SN L S+PD I L SL+K+ + TN
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 231 SSLRELRVDYNRLKALPEAVGKIHT-LEVLSVRYNNIKQL---PTTMSSLSSLRELDVSF 286
S LR L + +NR++ L +V K + LE L + +N + ++ PT +L+ LD+SF
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV-----NLKHLDLSF 99
Query: 287 NELESVP 293
N +++P
Sbjct: 100 NAFDALP 106
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 41/228 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K RDL LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RDLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 150
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLV 303
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLL 197
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ +L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 139/331 (41%), Gaps = 42/331 (12%)
Query: 71 DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA 130
D E +S L L E+S LNLQ +I + + L LDL+ +
Sbjct: 236 DDEDISSAMLKGLCEMS----VESLNLQEHRFSDIS--STTFQCFTQLQELDLTATHLKG 289
Query: 131 VPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPVA---LSRLVR 186
+P+ + GL+ LKKL L N +L S + SL +L +RGN + L + L +L
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-VKKLHLGVGCLEKLGN 348
Query: 187 LEELDLGSNNLSS---LPDSIGSLISLKKLIVETND-LEELPHTIGQCSSLRELRVDYNR 242
L+ LDL N++ + + +L L+ L + N+ L +C L L + + R
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 243 LK--ALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFA 299
L A +H L+VL++ Y + ++ L LR L++ N +
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD-------- 460
Query: 300 TTLVKMNIGNNFADLRAL-----------PRSIGNLEMLEELDISNNQIRVLPDSFRMLS 348
T+ K N+ L L ++ +L + +D+S+N + DS LS
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC--DSIDSLS 518
Query: 349 RLR--VLRVQENPLE-VPPRNIVEMGAQAVV 376
L+ L + N + + PR + + Q+ +
Sbjct: 519 HLKGIYLNLAANSINIISPRLLPILSQQSTI 549
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 41/228 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGL--------------------GELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLV 303
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLL 197
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 41/228 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGL--------------------GELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLV 303
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLL 197
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 41/228 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGL--------------------GELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLV 303
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLL 197
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 41/230 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K N+ LP + K +++ L LSEN + AT+
Sbjct: 9 KVASHLEVNCDK------------RNLTALPPDLPKDTTI--LHLSENLLYTFSLATLMP 54
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 55 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 113
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L + L+EL + N LK LP + L
Sbjct: 114 TSLP--LGALRGLGE--------------------LQELYLKGNELKTLPPGLLTPTPKL 151
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLVKM 305
E LS+ NN+ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPF 200
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ NL++LP + +++ L + ++ T L L P+T L +L
Sbjct: 7 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 61
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 62 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 121 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 179 LLQENSLYTIPKGF 192
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 140 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 197
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 198 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKI 253
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSF------- 140
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310
+LP S+L++L LD+S N+++S+ + T L +M + N
Sbjct: 141 --------------KLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 181
Query: 311 FADLRALPRSI---GNLE--MLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
DL P + G + L+EL + NQ++ +PD F L+ L+ + + NP +
Sbjct: 182 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 241
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 242 PR----------IDYLSRWLNKNSQKEQ 259
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 115 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 172
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 173 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 231 SSLRELRV-----DYNRLKALPEAV 250
+ +E+R+ D N+LK++P+ +
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGI 220
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 19 NFYKIPDNLP--FSTKNLDLSWNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 72
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 130
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 174
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 22/145 (15%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG 137
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--- 168
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
DL R++ + L L + Q A + +RL+EL L +N L
Sbjct: 169 -------DL---RVLHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQL 213
Query: 198 SSLPDSI-GSLISLKKLIVETNDLE 221
S+PD I L SL+K+ + TN +
Sbjct: 214 KSVPDGIFDRLTSLQKIWLHTNPWD 238
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NNQ+ LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K R L LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RQLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEA-VGKIH 254
+SLP ++ L L++L ++ N+L+ LP + L +L + N+L LP + +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 255 TLEVLSVRYNNIKQLP 270
L+ L ++ N++ +P
Sbjct: 173 NLDTLLLQENSLYTIP 188
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 140 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 197
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 198 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKI 253
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++
Sbjct: 91 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSF------- 141
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310
+LP S+L++L LD+S N+++S+ + T L +M + N
Sbjct: 142 --------------KLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 182
Query: 311 FADLRALPRSI---GNLE--MLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
DL P + G + L+EL + NQ++ +PD F L+ L+ + + NP +
Sbjct: 183 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 242
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 243 PR----------IDYLSRWLNKNSQKEQ 260
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 115 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 172
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 173 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 231 SSLRELRV-----DYNRLKALPEAV 250
+ +E+R+ D N+LK++P+ +
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGI 221
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 20 NFYKIPDNLP--FSTKNLDLSWNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 73
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 131
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 175
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 22/142 (15%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG 137
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--- 169
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
DL R++ + L L + Q A + +RL+EL L +N L
Sbjct: 170 -------DL---RVLHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQL 214
Query: 198 SSLPDSI-GSLISLKKLIVETN 218
S+PD I L SL+K+ + TN
Sbjct: 215 KSVPDGIFDRLTSLQKIWLHTN 236
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NNQ+ LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K R L LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RQLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEA-VGKIH 254
+SLP ++ L L++L ++ N+L+ LP + L +L + N+L LP + +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 255 TLEVLSVRYNNIKQLP 270
L+ L ++ N++ +P
Sbjct: 173 NLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 290
+ L +L +D L L + G + L L + +N ++ LP +L +L LDVSFN L
Sbjct: 55 TRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 291 SVP-ESLCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRML 347
S+P +L L ++ + N +L+ LP + LE+L ++NNQ+ LP L
Sbjct: 114 SLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 348 SRLRVLRVQENPLEVPPRNI 367
L L +QEN L P+
Sbjct: 172 ENLDTLLLQENSLYTIPKGF 191
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K R L LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RQLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEA-VGKIH 254
+SLP ++ L L++L ++ N+L+ LP + L +L + N+L LP + +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 255 TLEVLSVRYNNIKQLP 270
L+ L ++ N++ +P
Sbjct: 173 NLDTLLLQENSLYTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 290
+ L +L +D L L + G + L L + +N ++ LP +L +L LDVSFN L
Sbjct: 55 TRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 291 SVP-ESLCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRML 347
S+P +L L ++ + N +L+ LP + LE+L ++NNQ+ LP L
Sbjct: 114 SLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 348 SRLRVLRVQENPLEVPPRNI 367
L L +QEN L P+
Sbjct: 172 ENLDTLLLQENSLYTIPKGF 191
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K R L LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RQLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEA-VGKIH 254
+SLP ++ L L++L ++ N+L+ LP + L +L + N+L LP + +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 255 TLEVLSVRYNNIKQLP 270
L+ L ++ N++ +P
Sbjct: 173 NLDTLLLQENSLYTIP 188
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 140 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 197
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 198 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKI 253
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSF------- 140
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310
+LP S+L++L LD+S N+++S+ + T L +M + N
Sbjct: 141 --------------KLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 181
Query: 311 FADLRALPRSI---GNLE--MLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
DL P + G + L+EL + NQ++ +PD F L+ L+ + + NP +
Sbjct: 182 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 241
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 242 PR----------IDYLSRWLNKNSQKEQ 259
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 115 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 172
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 173 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 231 SSLRELRV-----DYNRLKALPEAV 250
+ +E+R+ D N+LK++P+ +
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGI 220
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 19 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 72
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 73 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 130
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 174
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 22/142 (15%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG 137
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--- 168
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
DL R++ + L L + Q A + +RL+EL L +N L
Sbjct: 169 -------DL---RVLHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQL 213
Query: 198 SSLPDSI-GSLISLKKLIVETN 218
S+PD I L SL+K+ + TN
Sbjct: 214 KSVPDGIFDRLTSLQKIWLHTN 235
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 41/228 (17%)
Query: 79 KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGG 137
K+AS +EV+ K RDL LP + K +++ L LSEN + AT+
Sbjct: 8 KVASHLEVNCDK--RDLTA----------LPPDLPKDTTI--LHLSENLLYTFSLATLMP 53
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
+ L +L+L + +L G L L LDL NQ+ +LP+ L L LD+ N L
Sbjct: 54 YTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 198 SSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTL 256
+SLP +G+L L L+EL + N LK LP + L
Sbjct: 113 TSLP--LGALRGL--------------------GELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 257 EVLSVRYNNIKQLPTT-MSSLSSLRELDVSFNELESVPESLCFATTLV 303
E LS+ N++ +LP ++ L +L L + N L ++P+ F + L+
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLL 197
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 181 LSRLVRLEELDLGSNNLSSLPDSI---GSLISLKKLIVETNDLEEL-PHTIGQCSSLREL 236
+S++ E++ +L++LP + +++ L + ++ T L L P+T L +L
Sbjct: 6 VSKVASHLEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-----RLTQL 60
Query: 237 RVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ES 295
+D L L + G + L L + +N ++ LP +L +L LDVSFN L S+P +
Sbjct: 61 NLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 296 LCFATTLVKMNIGNNFADLRALPRS-IGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVL 353
L L ++ + N +L+ LP + LE+L ++NN + LP L L L
Sbjct: 120 LRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Query: 354 RVQENPLEVPPRNI 367
+QEN L P+
Sbjct: 178 LLQENSLYTIPKGF 191
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 140 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 197
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 198 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKI 253
SL + L SL+KL+ VETN LE P IG +L+EL V +N +++
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSF------- 139
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310
+LP S+L++L LD+S N+++S+ + T L +M + N
Sbjct: 140 --------------KLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 180
Query: 311 FADLRALPRSI---GNLE--MLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
DL P + G + L+EL + NQ++ +PD F L+ L+ + + NP +
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 241 PR----------IDYLSRWLNKNSQKEQ 258
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 115 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 172
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 173 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 231 SSLRELRV-----DYNRLKALPEAV 250
+ +E+R+ D N+LK++P+ +
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGI 219
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 253 IHTLEVLS---VRYNNIKQLP----TTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L + +SSL L ++ + LE+ P + TL ++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 173
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 22/142 (15%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG 137
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--- 167
Query: 138 LSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNL 197
DL R++ + L L + Q A + +RL+EL L +N L
Sbjct: 168 -------DL---RVLHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQL 212
Query: 198 SSLPDSI-GSLISLKKLIVETN 218
S+PD I L SL+K+ + TN
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQIS 175
S +++ E + +VPA I ++ + L L+ N+I +L P L L YL+L NQ++
Sbjct: 20 SGTTVNCQERSLASVPAGIP--TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT 77
Query: 176 ALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 213
ALPV + +L +L L L N L S+P +G +LK L
Sbjct: 78 ALPVGVFDKLTKLTHLALHINQLKSIP--MGVFDNLKSL 114
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 140 SLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNL 197
S K LDL N + L S L LDL +I + A L L L L N +
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 198 SSLP-DSIGSLISLKKLI-VETN--DLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKI 253
SL + L SL+KL+ +ETN LE P IG +L+EL V +N +++
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSF------- 141
Query: 254 HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310
+LP S+L++L LD+S N+++S+ + T L +M + N
Sbjct: 142 --------------KLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNL 182
Query: 311 FADLRALPRSI---GNLE--MLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP- 363
DL P + G + L+EL + NQ++ +PD F L+ L+ + + NP +
Sbjct: 183 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 242
Query: 364 PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
PR + Y++ + K K Q
Sbjct: 243 PR----------IDYLSRWLNKNSQKEQ 260
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 35/139 (25%)
Query: 112 IGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI--IELPDSIGDLLSLVYLDL 169
+ L LV+L+ + + P IG L +LK+L++ N I +LP+ +L +L +LDL
Sbjct: 101 LSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 170 RGNQISAL-----------------------------PVALSRLVRLEELDLGSNNLSSL 200
N+I ++ P A +RL+EL L +N L S+
Sbjct: 159 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV 217
Query: 201 PDSI-GSLISLKKLIVETN 218
PD I L SL+K+ + TN
Sbjct: 218 PDGIFDRLTSLQKIWLHTN 236
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 115 LSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGN 172
LS L +L L+ N I ++ GLSSL+KL + L + IG L +L L++ N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 173 QISA--LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
I + LP S L LE LDL SN + S+ + ++ L+ + DL P Q
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 231 SSLRELRV-----DYNRLKALPEAV 250
+ +E+R+ D N+LK++P+ +
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGI 221
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 20 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 73
Query: 253 IHTLEVLS---VRYNNIKQLP----TTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L + +SSL L L+ + LE+ P + TL ++
Sbjct: 74 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKEL 131
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR 354
N+ +N LP NL LE LD+S+N+I+ + + LRVL
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLH 175
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 269 LPTTMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRAL-PRSIGNLEM 326
L + S + L +L ++ NE+ + ++ + T L+K+N+ NF L ++ R NL+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF--LGSIDSRMFENLDK 348
Query: 327 LEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVE 369
LE LD+S N IR L D SF L L+ L + N L+ P I +
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 116 SSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ 173
S + + DLS+++I A+ + + L++L L N I ++ D + L L+ L+L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 174 ISALPVAL-SRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSS 232
+ ++ + L +LE LDL N++ +L D S + L +
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLP--------------------N 372
Query: 233 LRELRVDYNRLKALPEAV 250
L+EL +D N+LK++P+ +
Sbjct: 373 LKELALDTNQLKSVPDGI 390
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 229
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 230 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 290 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 349
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 350 LRVLRVQEN 358
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 348
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 229
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 230 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 290 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 349
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 350 LRVLRVQEN 358
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-SSLANL 348
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 108 LPDSIGKLSSLVSLDLS--ENRIVAVPATIGGLSSLKKLDL-HANRIIELPDSIGDLLSL 164
+P S+ L L L + N + +P I L+ L L + H N +PD + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 165 VYLDLRGNQISA-LPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISL-KKLIVETNDLE 221
V LD N +S LP ++S L L + N +S ++PDS GS L + + N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 222 -ELPHT-----------------------IGQCSSLRELRVDYNRLKALPEAVGKIHTLE 257
++P T G + +++ + N L VG L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 258 VLSVRYNNI-KQLPTTMSSLSSLRELDVSFNEL 289
L +R N I LP ++ L L L+VSFN L
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 108 LPDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSL- 164
+PD + ++ +LV+LD S N + +P +I L +L + NRI +PDS G L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 165 VYLDLRGNQISA-LPVALSRLVRLEELDLGSNNLSSLPDS---IGSLISLKKLIVETNDL 220
+ + N+++ +P + L L +DL N L D+ GS + +K+ + N L
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG--DASVLFGSDKNTQKIHLAKNSL 233
Query: 221 EELPHTIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNI-KQLPTTMSSLSS 278
+G +L L + NR+ LP+ + ++ L L+V +NN+ ++P +
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GN 289
Query: 279 LRELDVS 285
L+ DVS
Sbjct: 290 LQRFDVS 296
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 118/249 (47%), Gaps = 34/249 (13%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQ 229
NQI+ + L L L L+L SN +S + ++ L SL++L +N + +L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 230 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N+L
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 290 ESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSR 349
+ + ++ +L L +LD++NNQI L L++
Sbjct: 230 KDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGLTK 262
Query: 350 LRVLRVQEN 358
L L++ N
Sbjct: 263 LTELKLGAN 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 234 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 291
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 292 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 348
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 349 TNINWLSAGHNQISDL 364
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166
P L++L L L +N + A+P T L +L L LH NRI +P+ + L SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 167 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETN 218
L L N+++ + P A L RL L L +NNLS+LP +++ L +L+ L + N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 166
P + L L +L L + + P GL++L+ L L N + LP D+ DL +L +
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 167 LDLRGNQISALP-VALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELP 224
L L GN+IS++P A L L+ L L N ++ + P + L L L + N+L LP
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 225 -HTIGQCSSLRELRVDYN 241
+ +L+ LR++ N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166
P L++L L L +N + A+P T L +L L LH NRI +P+ + L SL
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 167 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETN 218
L L N+++ + P A L RL L L +NNLS+LP +++ L +L+ L + N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 166
P + L L +L L + + P GL++L+ L L N + LP D+ DL +L +
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 167 LDLRGNQISALP-VALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELP 224
L L GN+IS++P A L L+ L L N ++ + P + L L L + N+L LP
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 225 -HTIGQCSSLRELRVDYN 241
+ +L+ LR++ N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 170
KL SL L + N+ + + L SL+ LDL N + + S D +SL YLDL
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
N + + L +LE LD +NL + + +SL+ LI ++ HT
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY-----LDISHT---- 455
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNE 288
RV +N + + +LEVL + N+ ++ LP + L +L LD+S +
Sbjct: 456 ----HTRVAFNGI------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 289 LESV-PESLCFATTLVKMNIG-NNFADLRALPRSIGNLEMLEELDISNNQI 337
LE + P + ++L +N+ NNF L P L L+ LD S N I
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHI 554
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 42 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 95
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 153
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR-----VQENPL 360
N+ +N LP NL LE LD+S+N+I+ + + LRVL L
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDL 208
Query: 361 EVPPRNIVEMGA 372
+ P N ++ GA
Sbjct: 209 SLNPMNFIQPGA 220
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT 134
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT 191
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 107 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 154
+LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 115 LSSLVSLDLSENRIV---AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 171
L SL LDLS N + + G +SL+ LDL N I + + L L +LD +
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 403
Query: 172 NQISALP--VALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVETNDLEE--LPHT 226
+ + + A L +L LD+ N D I L SL L + N ++ L +
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 463
Query: 227 IGQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDV 284
++L L + +L+ + V +H L++L++ +NN+ L ++ + L SL LD
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
Query: 285 SFNELESVPESL-CFATTLVKMNIGNN 310
SFN +E+ L F +L N+ NN
Sbjct: 524 SFNRIETSKGILQHFPKSLAFFNLTNN 550
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 197 LSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIH 254
LS +PD I S S K + + N L+ L ++ S L+ L + ++ + + A +H
Sbjct: 18 LSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 255 TLEVLSVRYNNIKQL-PTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN 310
L L + N I+ P + S L+SL L + LES P + TL K+N+ +N
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHN 133
Query: 311 FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 359
F LP NL L +D+S N I+ + ++ L+ LR ENP
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-----VNDLQFLR--ENP 175
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRI--IELPDSIGDLLSLV 165
P S L+SL +L E ++ ++ + IG L +LKKL++ N I +LP +L +LV
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 166 YLDLRGNQISALPVALSRLVRLE-----ELDLGSNNLSSLPDSIGSLISLKKLIVETN 218
++DL N I + V + +R LD+ N + + D I L +L + N
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 209
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 162 LSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDL 220
+S+ ++L+ ++ S L + R R++ELDL + +L+ LP I + SLKKL++ N
Sbjct: 253 MSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSF 312
Query: 221 EELPH-TIGQCSSLRELRVDYN--RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLS 277
++L SLR+L + N +L + K+ L+ L + +++I+ L
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 278 SLRE---LDVSFNE 288
+LR L++S+NE
Sbjct: 373 NLRHLQYLNLSYNE 386
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 60/293 (20%)
Query: 121 LDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV 179
LDL+ + +P+ I G++SLKKL L+AN +L + SL L ++GN
Sbjct: 282 LDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN------- 334
Query: 180 ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELR-- 237
+ +LDLG+ L L + L+KL + +D+E Q +LR L+
Sbjct: 335 -------MRKLDLGTRCLEKLEN-------LQKLDLSHSDIEASDCCNLQLKNLRHLQYL 380
Query: 238 -VDYNRLKALP-EAVGKIHTLEVLSVRYN--NIKQLPTTMSSLSSLRELDVSFNELESVP 293
+ YN L +A + LE+L V + ++K + +L LR L++S L++
Sbjct: 381 NLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSN 440
Query: 294 ESLCFA-TTLVKMNI-GNNFAD----LRALPRSIGNLEML-------------------- 327
+ L L +N+ GN+F D L + +G+LE+L
Sbjct: 441 QHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 328 -EELDISNNQIRVLPDSFRMLSRLRVLRVQ---ENPLEVPPRNIVEMGAQAVV 376
LD+S+N + DS LS L+ L + N +PP + + Q+++
Sbjct: 501 VNHLDLSHNSLT--GDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSII 551
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 115 LSSLVSLDLSENRIV---AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 171
L SL LDLS N + + G +SL+ LDL N I + + L L +LD +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408
Query: 172 NQISALP--VALSRLVRLEELDLGSNNLSSLPDSIG-SLISLKKLIVETNDLEE--LPHT 226
+ + + A L +L LD+ N D I L SL L + N ++ L +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468
Query: 227 IGQCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELDV 284
++L L + +L+ + V +H L++L++ +NN+ L ++ + L SL LD
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 285 SFNELESVPESL-CFATTLVKMNIGNN 310
SFN +E+ L F +L N+ NN
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 197 LSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIH 254
LS +PD I S S K + + N L+ L ++ S L+ L + ++ + + A +H
Sbjct: 23 LSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 255 TLEVLSVRYNNIKQL-PTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN 310
L L + N I+ P + S L+SL L + LES P + TL K+N+ +N
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHN 138
Query: 311 FADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP 359
F LP NL L +D+S N I+ + ++ L+ LR ENP
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-----VNDLQFLR--ENP 180
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRI--IELPDSIGDLLSLV 165
P S L+SL +L E ++ ++ + IG L +LKKL++ N I +LP +L +LV
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 166 YLDLRGNQISALPVALSRLVRLE-----ELDLGSNNLSSLPDSIGSLISLKKLIVETN 218
++DL N I + V + +R LD+ N + + D I L +L + N
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 71/140 (50%), Gaps = 26/140 (18%)
Query: 248 EAVGKIHTLEVLSVRYNNIK---QLPTTMSSLSSLRELDVSFNELES--VPESLCFATTL 302
+ + L+ L ++ N +K ++ ++SSL LDVS N L S + +A ++
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 303 VKMNIGNNFA---------------DLR-----ALPRSIGNLEMLEELDISNNQIRVLPD 342
+ +N+ +N DL ++P+ + +L+ L+EL++++NQ++ +PD
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 343 S-FRMLSRLRVLRVQENPLE 361
F L+ L+ + + +NP +
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 190 LDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL--PHTIGQCSSLRELRVDYNRLKALP 247
+D + NL+ +P + K L + N + EL P I S LR LR+ +NR+++L
Sbjct: 36 VDYSNRNLTHVPKDLPP--RTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLD 92
Query: 248 EAVGKIHT-LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 293
V + LE L V +N ++ + + ++SLR LD+SFN+ + +P
Sbjct: 93 FHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLP 137
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 115 LSSLVSLDLSENRI--VAVPATIGGLSSLKKLDLHANRIIELPDSIGDLL--SLVYLDLR 170
+SSL +LD+S N + A T S+ L+L +N L S+ L + LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLH 458
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVETN 218
N+I ++P ++ L L+EL++ SN L S+PD + L SL+ + + N
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 163 SLVYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLSSLPDS---IGSLISLKKLIVETN 218
S +L+ N + ++ S L RL+ L L N L + ++ SL+ L V N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 219 DLEELPH--TIGQCSSLRELRVDYNRL-----KALPEAVGKIHTLEVLSVRYNNIKQLPT 271
L + T S+ L + N L + LP V +VL + N I +P
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMSIPK 467
Query: 272 TMSSLSSLRELDVSFNELESVPESL 296
++ L +L+EL+V+ N+L+SVP+ +
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGV 492
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRI-IELPDSIGDL--LSLVYLDLR 170
KL SL L + N+ + + L SL+ LDL N + + S D SL YLDL
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV----ETNDLEELPHT 226
N + + L +LE LD +NL + + +SL+ LI T+
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 227 IGQCSSLRELRVDYNRLKA--LPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELD 283
SSL L++ N + LP+ ++ L L + ++QL PT +SLSSL+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 284 VSFNELESV 292
+S N S+
Sbjct: 501 MSHNNFFSL 509
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCS--SLRELRV-DYNRLKALPEAVGK 252
N +PD++ S K L + N L L G S S EL+V D +R + G
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHL----GSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 253 IHTLEVLS---VRYNNIKQLP-TTMSSLSSLREL---DVSFNELESVPESLCFATTLVKM 305
+L LS + N I+ L S LSSL++L + + LE+ P + TL ++
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKEL 129
Query: 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLR-----VQENPL 360
N+ +N LP NL LE LD+S+N+I+ + + LRVL L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDL 184
Query: 361 EVPPRNIVEMGA 372
+ P N ++ GA
Sbjct: 185 SLNPMNFIQPGA 196
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 107 WLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL 154
+LPD +L +L LDLS+ ++ + P LSSL+ L++ N L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 80 LASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT 134
LASL + K ++LN+ + L+ + + LP+ L++L LDLS N+I ++ T
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 175
S ++D S + +VP I ++ + L L+ NRI +L + D L+ L LDL NQ++
Sbjct: 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 176 ALPVA-LSRLVRLEELDLGSNNLSSLP 201
LP +L +L +L L N L S+P
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 282 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 341
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 14 VDCSGKSLASVPTGI-PTTTQVLYLYDNRITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 342 DS-FRMLSRLRVLRVQENPLEVPPRNIVE 369
F L++L L + +N L+ PR +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 166
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 167 LDLRGN 172
+ L N
Sbjct: 107 IWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 175
S ++D S + +VP I ++ + L L+ N+I +L + D L+ L LDL NQ++
Sbjct: 18 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Query: 176 ALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 213
LP +L +L +L L N L S+P G+ +LK L
Sbjct: 76 VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 112
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 282 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 341
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 22 VDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 342 DS-FRMLSRLRVLRVQENPLEVPPRNIVE 369
F L++L L + +N L+ PR +
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 166
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 167 LDLRGN 172
+ L N
Sbjct: 115 IWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQIS 175
S ++D S + +VP I ++ + L L+ N+I +L + D L+ L LDL NQ++
Sbjct: 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Query: 176 ALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 213
LP +L +L +L L N L S+P G+ +LK L
Sbjct: 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 104
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 282 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP 341
+D S L SVP + TT V N L P L L LD+ NNQ+ VLP
Sbjct: 14 VDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 342 DS-FRMLSRLRVLRVQENPLEVPPRNIVE 369
F L++L L + +N L+ PR +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVY 166
P +L+ L LDL N++ +PA + L+ L +L L+ N++ +P + +L SL +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 167 LDLRGN 172
+ L N
Sbjct: 107 IWLLNN 112
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 103 DNIEWLPD-SIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHAN---RIIELPDS 157
+ I ++P S +L L L N + + A GL+ L++LDL N R+++ P +
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD-PTT 99
Query: 158 IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPD-SIGSLISLKKLIV 215
L L L L + L L R L L+ L L NNL +LPD + L +L L +
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 216 ETNDLEELP-HTIGQCSSLRELRVDYNRL-KALPEAVGKIHTLEVLSVRYNNIKQLPT-T 272
N + +P H SL L + N + + P A + L L + NN+ LP
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Query: 273 MSSLSSLRELDVSFN 287
+ L SL+ L ++ N
Sbjct: 220 LVPLRSLQYLRLNDN 234
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 228 GQCSSLRELRVDYN----RLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELD 283
G C E +V + L+A+P + + + + + N I +P +S S R L
Sbjct: 3 GACVCYNEPKVTTSCPQQGLQAVPTGIPA--SSQRIFLHGNRISYVPA--ASFQSCRNLT 58
Query: 284 VSF---NELESVPESLCFATTLV-KMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIR 338
+ + N L + + TL+ ++++ +N A LR + P + L L L + ++
Sbjct: 59 ILWLHSNALAGIDAAAFTGLTLLEQLDLSDN-AQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 339 VL-PDSFRMLSRLRVLRVQENPLEVPPRN 366
L P FR L+ L+ L +Q+N L+ P N
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDN 146
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 127 RIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALPVA-LSRL 184
R+ +VPA I + ++L L+ N+I +L P L++L L N+++A+P +L
Sbjct: 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 185 VRLEELDLGSNNLSSLPDSIGSLISLKKL 213
+L +LDL N+L S+P G+ +LK L
Sbjct: 81 TQLTQLDLNDNHLKSIPR--GAFDNLKSL 107
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 233 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 290
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 291 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDV-SSLANL 347
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 348 TNINWLSAGHNQISDL 363
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 227
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPLAN-- 170
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 287
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 171 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 288 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 347
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 227 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 259
Query: 348 SRLRVLRVQEN 358
++L L++ N
Sbjct: 260 TKLTELKLGAN 270
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 119
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 227
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 120 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLAN-- 175
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 287
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 176 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 231
Query: 288 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 347
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 232 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 264
Query: 348 SRLRVLRVQEN 358
++L L++ N
Sbjct: 265 TKLTELKLGAN 275
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 238 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 295
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 296 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 352
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 353 TNINWLSAGHNQISDL 368
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 154 LPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKK 212
LP I ++ +YLD GNQ + +P LS L +DL +N +S+L + S ++ L
Sbjct: 25 LPKGIPRDVTELYLD--GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 213 LIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLS 260
LI+ N L + P T SLR L + N + +PE G + L LS
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALS 129
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 71 DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA 130
DG + +L+ E+S+ K ++L N + + S ++ L++L LS NR+
Sbjct: 39 DGNQFTLVP----KELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRC 92
Query: 131 VPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQI 174
+P T GL SL+ L LH N I +P+ + DL +L +L + N +
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 36/152 (23%)
Query: 235 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVP 293
EL +D N+ +P+ + L ++ + N I L + S+++ L L +S+N L +P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 294 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRV 352
PR+ L+ L L + N I V+P+ +F LS L
Sbjct: 95 ------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Query: 353 LRVQENPLEVPPRNIVEMGAQAVVQYMADLVE 384
L + NPL +Q+++D V+
Sbjct: 131 LAIGANPLY----------CDCNMQWLSDWVK 152
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 141 LKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSS 199
+ +L L N+ +P + + L +DL N+IS L + S + +L L L N L
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 200 LPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 243
+P + L SL+ L + ND+ +P S+L L + N L
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 108 LPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166
LP I + + L L N+ VP + L +DL NRI L + S ++ L+
Sbjct: 25 LPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 167 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDL 220
L L N++ +P L L L L N++S +P+ + L +L L + N L
Sbjct: 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 118
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 227
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 119 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLAN-- 174
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 287
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 175 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 230
Query: 288 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 347
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 231 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 263
Query: 348 SRLRVLRVQEN 358
++L L++ N
Sbjct: 264 TKLTELKLGAN 274
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 237 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 294
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 295 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDV-SSLANL 351
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 352 TNINWLSAGHNQISDL 367
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 42/205 (20%)
Query: 193 GSNNLSSLPDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLKALPEAV 250
G ++S+ D +G ++S LI E+++L + + L+ R RL +P +
Sbjct: 84 GHTPIASILDYLG-IVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANL 142
Query: 251 -GKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGN 309
+ L L +R N I+++P+ + F++LE++ ES+ F +
Sbjct: 143 LTDMRNLSHLELRAN-IEEMPSHL------------FDDLENL-ESIEFGSN-------- 180
Query: 310 NFADLRALPRSI-GNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVP-PRN 366
LR +PR I G + L++L++++NQ++ +PD F L+ L+ + + NP + PR
Sbjct: 181 ---KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR- 236
Query: 367 IVEMGAQAVVQYMADLVEKRDAKTQ 391
+ Y++ + K K Q
Sbjct: 237 ---------IDYLSRWLNKNSQKEQ 252
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 112 IGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHAN 149
GK+ L L+L+ N++ +VP I L+SL+K+ LH N
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 144 LDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL-P 201
+D + E+P ++ + ++ + L+ N I +P A S +L +DL +N +S L P
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRLE--QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 202 DSIGSLISLKKLIVETNDLEELPHTIGQ-CSSLRELRVDYNRLKALP-EAVGKIHTLEVL 259
D+ L SL L++ N + ELP ++ + SL+ L ++ N++ L +A +H L +L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
Query: 260 SVRYNNIKQLPT-TMSSLSSLRELDVSFN 287
S+ N ++ + T S L +++ + ++ N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVY 166
P + L +DLS N+I P GL SL L L+ N+I ELP S+ + L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 167 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL 200
L L N+I+ L V A L L L L N L ++
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 318 PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIVE 369
P + + L +D+SNNQI L PD+F+ L L L + N + P+++ E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 78 IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATI-G 136
IK+ S K R ++L N + E PD+ L SL SL L N+I +P ++
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Query: 137 GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGS 194
GL SL+ L L+AN+I L D+ DL +L L L N++ + S L ++ + L
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Query: 195 N 195
N
Sbjct: 162 N 162
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 39/251 (15%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
D + L++L ++ S N++ + + L+ L + ++ N+I ++ + +L +L L L
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 114
Query: 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV--ETNDLEELPHTI 227
NQI+ + L L L L+L SN +S + ++ L SL++L + DL+ L +
Sbjct: 115 FNNQITDID-PLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPLAN-- 170
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 287
++L L + N++ + + K+ LE L N I + T + L++L EL ++ N
Sbjct: 171 --LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 288 ELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRML 347
+L+ + ++ +L L +LD++NNQI L L
Sbjct: 227 QLKDI--------------------------GTLASLTNLTDLDLANNQISNLA-PLSGL 259
Query: 348 SRLRVLRVQEN 358
++L L++ N
Sbjct: 260 TKLTELKLGAN 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170
++ L++L LDL+ N+I + A + GL+ L +L L AN+I + G L +L L+L
Sbjct: 233 TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELN 290
Query: 171 GNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQC 230
NQ+ + +S L L L L NN+S + + SL L++L N + ++ ++
Sbjct: 291 ENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANL 347
Query: 231 SSLRELRVDYNRLKAL 246
+++ L +N++ L
Sbjct: 348 TNINWLSAGHNQISDL 363
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 144 LDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL-P 201
+D + E+P ++ + ++ + L+ N I +P A S +L +DL +N +S L P
Sbjct: 16 VDCRGKGLTEIPTNLPETITEIRLE--QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 202 DSIGSLISLKKLIVETNDLEELPHTIGQ-----------CSSLRELRVDYNRLKALPEAV 250
D+ L SL L++ N + ELP ++ + + + LRVD A
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVD---------AF 124
Query: 251 GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFN 287
+H L +LS+ N ++ + T S L +++ + ++ N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 109 PDSIGKLSSLVSLDLSENRIVA-VPATIGGLSSLKKLDLHANRIIELPDSIGD-LLSLVY 166
P + L +DLS N+I P GL SL L L+ N+I ELP S+ + L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 167 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL 200
L L N+I+ L V A L L L L N L ++
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTI 143
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 78 IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATI-G 136
IK+ S K R ++L N + E PD+ L SL SL L N+I +P ++
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
Query: 137 GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGS 194
GL SL+ L L+AN+I L D+ DL +L L L N++ + S L ++ + L
Sbjct: 102 GLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161
Query: 195 N 195
N
Sbjct: 162 N 162
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 318 PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIVE 369
P + + L +D+SNNQI L PD+F+ L L L + N + P+++ E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 36/176 (20%)
Query: 84 IEVSSKKGTRDLNLQNKLMDNIEWLP----DSIGKLSSLVSLDLSENRIVAVPA-TIGGL 138
IEV + G LN +L DN WL + LS L L L N I ++P+ +
Sbjct: 114 IEVGAFNGLASLNTL-ELFDN--WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 139 SSLKKLDLHANRIIEL--PDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNN 196
SL +LDL + +E + L +L YL+L I +P L+ LV LEEL++ N+
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH 229
Query: 197 LSSL-PDSIGSLISLKKLIV------------------------ETNDLEELPHTI 227
+ P S L SLKKL V N+L LPH +
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 55/219 (25%)
Query: 210 LKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQ 268
K++ L E+P I S+ R L + N ++ + + +H LEVL + N+I+Q
Sbjct: 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 269 LPT-------------------------TMSSLSSLRELDVSFNELESVPESLCF--ATT 301
+ LS LREL + N +ES+P S F +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPS 172
Query: 302 LVKMNIG-------------NNFADLRALPRSIGNLE---------MLEELDISNNQI-R 338
L+++++G +L+ L + N++ LEEL++S N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232
Query: 339 VLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQ 377
+ P SF LS L+ L V + + + RN + G ++V+
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVE 270
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKI----HTLEVLSVRYNNIKQLPTTMSSLSSLRELD 283
G SL+ L + N L+++ + G+I L L + N +P + +R L+
Sbjct: 384 GAWPSLQTLVLSQNHLRSM-QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 442
Query: 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRAL--PRSIGNLEMLEELDISNNQIRVLP 341
+S + V C TL +++ NN D +L PR L+EL IS N+++ LP
Sbjct: 443 LSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKLKTLP 493
Query: 342 DSFRMLSRLRVLRVQENPLEVPPRNIVE 369
D+ + L V+++ N L+ P I +
Sbjct: 494 DA-SLFPVLLVMKIASNQLKSVPDGIFD 520
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 128 IVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL---LSLVYLDLRGNQISALPV-ALSR 183
++P+ G +++K LDL N+I + GDL +L L L+ ++I+ + A
Sbjct: 43 FTSIPS--GLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 184 LVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-------------IGQ 229
L LE LDL N+LSSL S G L SLK L + N + L T IG
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Query: 230 CSSLREL-RVDYNRLKALPE 248
+ E+ R+D+ L +L E
Sbjct: 159 VETFSEIRRIDFAGLTSLNE 178
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 115 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQI 174
L +L SLD+S N +P + ++ L+L + I + I L + LD+ N +
Sbjct: 412 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNL 469
Query: 175 SALPVALSRLVRLEELDLGSNNLSSLPDS--IGSLISLKKLIVETNDLEELPHTI-GQCS 231
+ + L RL +EL + N L +LPD+ L+ +K + +N L+ +P I + +
Sbjct: 470 DSFSLFLPRL---QELYISRNKLKTLPDASLFPVLLVMK---IASNQLKSVPDGIFDRLT 523
Query: 232 SLRELRVDYN 241
SL+++ + N
Sbjct: 524 SLQKIWLHTN 533
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHAN 149
D+ L SL LDLS+N + ++ ++ G LSSLK L+L N
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 228 GQCSSLRELRVDYNRLKALPEAVGKI----HTLEVLSVRYNNIKQLPTTMSSLSSLRELD 283
G SL+ L + N L+++ + G+I L L + N +P + +R L+
Sbjct: 358 GAWPSLQTLVLSQNHLRSM-QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416
Query: 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRAL--PRSIGNLEMLEELDISNNQIRVLP 341
+S + V C TL +++ NN D +L PR L+EL IS N+++ LP
Sbjct: 417 LSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPR-------LQELYISRNKLKTLP 467
Query: 342 DSFRMLSRLRVLRVQENPLEVPPRNIVE 369
D+ + L V+++ N L+ P I +
Sbjct: 468 DA-SLFPVLLVMKISRNQLKSVPDGIFD 494
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 128 IVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD---LRGNQISALPV-ALSR 183
++P+ G +++K LDL N+I + GDL + L L+ ++I+ + A
Sbjct: 17 FTSIPS--GLTAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 184 LVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-------------IGQ 229
L LE LDL N+LSSL S G L SLK L + N + L T IG
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 230 CSSLREL-RVDYNRLKALPE 248
+ E+ R+D+ L +L E
Sbjct: 133 VETFSEIRRIDFAGLTSLNE 152
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 115 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQI 174
L +L SLD+S N +P + ++ L+L + I + I L + LD+ N +
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV--LDVSNNNL 443
Query: 175 SALPVALSRLVRLEELDLGSNNLSSLPDS 203
+ + L RL +EL + N L +LPD+
Sbjct: 444 DSFSLFLPRL---QELYISRNKLKTLPDA 469
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHAN 149
D+ L SL LDLS+N + ++ ++ G LSSLK L+L N
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 255 TLEVLSVRYNNIKQLPTTMSSLSSLREL---DVSFNELESVPESLCFATTLVKMNIGNN- 310
+L+ L +R N++ L T +L +L+ L D+S N S+PE+ + + +N+ +
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 421
Query: 311 -FADLRALPRSIGNLEM--------------LEELDISNNQIRVLPDSFRMLSRLRVLRV 355
+ +P+++ L++ L+EL IS N++ LPD+ +L L VL++
Sbjct: 422 IHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKI 480
Query: 356 QENPLEVPPRNIVE 369
N L+ P I +
Sbjct: 481 SRNQLKSVPDGIFD 494
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 98 QNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS 157
QN L ++E +++ L +L ++D+S+N ++P T +K L+L + RI +
Sbjct: 370 QNHLA-SLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGC 428
Query: 158 IGDLLSLV------------------YLDLRGNQISALPVALSRLVRLEELDLGSNNLSS 199
I L ++ L + N++ LP A S L L L + N L S
Sbjct: 429 IPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLKS 487
Query: 200 LPDSI-GSLISLKKLIVETN 218
+PD I L SL+K+ + TN
Sbjct: 488 VPDGIFDRLTSLQKIWLHTN 507
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 34/300 (11%)
Query: 113 GKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLR 170
G ++ SLDLS NRI + + + +L+ L L +N I + DS L SL +LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 171 GNQISALPVALSR-LVRLEELDLGSNNLSSLPDSIGSLIS-LKKL-IVETNDLEELPHT- 226
N +S L + + L L L+L N +L ++ SL S L KL I+ +++
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 227 ---IGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSS---- 278
+ L EL +D + L++ P+++ I + L + L ++S
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 279 --LRELDV---SFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS 333
LR+ D+ F+EL S E+ N+ L + + + + L EL+ S
Sbjct: 227 LELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285
Query: 334 NNQIRVLPDS-FRMLSRLRVLRVQENPLEVP-PRNIVEMGAQAVVQYMADLVEKRDAKTQ 391
NQ++ +PD F L+ L+ + + NP + PR + Y++ + K K Q
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR----------IDYLSRWLNKNSQKEQ 335
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYL 167
DS L SL LDLS N + + ++ LSSL L+L N L + S+ L+ + +
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 168 DLRGNQISALPVA---LSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETND---- 219
GN + + + L LEEL++ +++L S P S+ S+ ++ LI+
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 220 LEELPHTIG--QCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK-------QLP 270
LE +C LR+ +D L + G+ ++L + + N+K Q+
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSEL--STGETNSL-IKKFTFRNVKITDESLFQVM 270
Query: 271 TTMSSLSSLRELDVSFNELESVPESL 296
++ +S L EL+ S N+L+SVP+ +
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGI 296
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 102 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPDS--- 157
+ N++ P L +L LDLS N I + + GL L+ LDL N + L
Sbjct: 471 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 530
Query: 158 ------IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 209
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 590
Query: 210 LKKLIVETN 218
LK L ++ N
Sbjct: 591 LKSLNLQKN 599
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 56/272 (20%)
Query: 124 SENRIVAVPAT---IGGLSSLKKLDLHANRIIELP----DSIGDLLSLVY---------- 166
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 158 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 217
Query: 167 ----LDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 208
L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 218 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 277
Query: 209 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 278 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 332
Query: 268 QLPTTMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRALPR----SIG 322
L L L++ N++ + ++ L +++ N+F LR L S+
Sbjct: 333 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 323 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVL 353
+ L L+++ N+I ++ D+F L L VL
Sbjct: 385 H-SPLHILNLTKNKISKIESDAFSWLGHLEVL 415
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 225 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 283
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 11 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 60
Query: 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 342
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 61 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 96
Query: 343 SFRMLSRLRVLRVQENPLE 361
+F + L L + N ++
Sbjct: 97 TFAFCTNLTELHLMSNSIQ 115
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 102 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPDS--- 157
+ N++ P L +L LDLS N I + + GL L+ LDL N + L
Sbjct: 476 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 535
Query: 158 ------IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 209
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 595
Query: 210 LKKLIVETN 218
LK L ++ N
Sbjct: 596 LKSLNLQKN 604
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 56/272 (20%)
Query: 124 SENRIVAVPAT---IGGLSSLKKLDLHANRIIELP----DSIGDLLSLVY---------- 166
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 163 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 222
Query: 167 ----LDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 208
L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 223 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 282
Query: 209 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 283 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 337
Query: 268 QLPTTMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRALPR----SIG 322
L L L++ N++ + ++ L +++ N+F LR L S+
Sbjct: 338 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 323 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVL 353
+ L L+++ N+I ++ D+F L L VL
Sbjct: 390 H-SPLHILNLTKNKISKIESDAFSWLGHLEVL 420
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 225 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 283
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 16 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 65
Query: 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 342
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 66 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 101
Query: 343 SFRMLSRLRVLRVQENPLE 361
+F + L L + N ++
Sbjct: 102 TFAFCTNLTELHLMSNSIQ 120
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 102 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPAT-IGGLSSLKKLDLHANRIIELPDS--- 157
+ N++ P L +L LDLS N I + + GL L+ LDL N + L
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 158 ------IGDLLSLVYLDLRGNQISALPVALSR-LVRLEELDLGSNNLSSLPDSI-GSLIS 209
+ L L L+L N +PV + + L L+ +DLG NNL++LP S+ + +S
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 210 LKKLIVETN 218
LK L ++ N
Sbjct: 586 LKSLNLQKN 594
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 56/272 (20%)
Query: 124 SENRIVAVPAT---IGGLSSLKKLDLHANRIIELP----DSIGDLLSL------------ 164
S N+I A+ + I SSLKKL+L +N+I E +IG L L
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 165 --VYLDLRGNQISALPVALSRL-------------VRLEELDLGSNNLSSLP-DSIGSLI 208
+ L+L I L ++ S+L L LDL NNL+ + DS L
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272
Query: 209 SLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267
L+ +E N+++ L H++ ++R L + + K ++ + ++ S ++
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQW---- 327
Query: 268 QLPTTMSSLSSLRELDVSFNELESVPESLCFA-TTLVKMNIGNNFADLRALPR----SIG 322
L L L++ N++ + ++ L +++ N+F LR L S+
Sbjct: 328 --------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 323 NLEMLEELDISNNQI-RVLPDSFRMLSRLRVL 353
+ L L+++ N+I ++ D+F L L VL
Sbjct: 380 H-SPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 225 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT-MSSLSSLRELD 283
H + CS L+ L +P+ + + VL++ +N +++LP + S L LD
Sbjct: 6 HEVADCSHLK--------LTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD- 342
V FN + + LC + LP ML+ L++ +N++ L D
Sbjct: 56 VGFNTISKLEPELC-----------------QKLP-------MLKVLNLQHNELSQLSDK 91
Query: 343 SFRMLSRLRVLRVQENPLE 361
+F + L L + N ++
Sbjct: 92 TFAFCTNLTELHLMSNSIQ 110
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGN 172
L+ + L+LS N + V A I GL S+K LDL + +I ++ G L ++YLDL N
Sbjct: 89 NLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL--N 145
Query: 173 QISALPVALSRLVRLEELDLGSNNLSSL 200
QI+ + L+ L L+ L +G+N ++ L
Sbjct: 146 QITNIS-PLAGLTNLQYLSIGNNQVNDL 172
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 121 LDLSENRIVAVPATI-GGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALP 178
LDLS N + + + L +L+ L L+ N I+ + ++ D+ L L L NQIS P
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 179 VAL----SRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 213
V L ++L +L LDL SN L LP L L+KL
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLP-----LTDLQKL 186
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 40/272 (14%)
Query: 124 SENRIVAVPAT---IGGLSSLKKLDLHANRIIELP----DSIGDLLSLVY--LDLRGNQI 174
++N+I+A+ + G SSL+KLDL +N + E +IG L +L+ L +
Sbjct: 153 AKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLT 212
Query: 175 SALPVALSRLVRLEELDLGSNNLSSLPDSIGS---LISLKKLIVETNDLEELPHTIGQCS 231
L LS ++ L L +N L + +S S +L +L + N+L H +G S
Sbjct: 213 EKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL----HDVGNGS 267
Query: 232 -----SLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPTTMSS---------- 275
SLR L ++YN ++ L P + + L LS++ KQ + S
Sbjct: 268 FSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQW 327
Query: 276 LSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPR----SIGNLEMLEEL 330
L L L++ N + S + +L +++ F L+ L S+ + +L L
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-TL 386
Query: 331 DISNNQI-RVLPDSFRMLSRLRVLRVQENPLE 361
+++ N I ++ +F L +LR+L + N +E
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 116 SSLVSLDLSENRIVAVP-ATIGGL--SSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRG 171
+S+ +L L+ N+++A +T GL ++L +LDL N + ++ + S L SL YL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 172 NQISAL-PVALSRLVRLEELDLG------SNNLSSLPD----SIGSLISLKKLIVETNDL 220
N I L P + L L L L S +L+S P+ S L L+ L ++ N++
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 221 EEL-PHTIGQCSSLRELRVD--YNRLKALPEA--VGKIHT-LEVLSVRYNNIKQLPT-TM 273
+T SL+ L + + L+ L V H+ L L++ N+I ++ T
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF 401
Query: 274 SSLSSLRELDVSFNELE 290
S L LR LD+ NE+E
Sbjct: 402 SWLGQLRILDLGLNEIE 418
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 225 HTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELD 283
+ + CS L+ L +P+ + + VL++ +N +++LP T + S L LD
Sbjct: 6 YNVADCSHLK--------LTHIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILD 55
Query: 284 VSFNELESVPESLCFATTLVK-MNIGNN 310
FN + + LC L+K +N+ +N
Sbjct: 56 AGFNSISKLEPELCQILPLLKVLNLQHN 83
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 139 SSLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVAL-SRLVRLEELDLGSNN 196
+++KL + N I LP + ++ L L L N +S+LP + +L L + +NN
Sbjct: 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 197 LSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK--ALPEAVGKI 253
L + D + + SL+ L + +N L + + SL V YN L A+P AV ++
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210
Query: 254 HT---------------LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCF 298
L +L +++NN+ ++ L E+D+S+NELE +
Sbjct: 211 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKI-----M 264
Query: 299 ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358
VKM + LE L ISNN++ L + + L+VL + N
Sbjct: 265 YHPFVKM-------------------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305
Query: 359 PLEVPPRN 366
L RN
Sbjct: 306 HLLHVERN 313
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN---RIVAVPATIGGLSSLKKLDLHANRI 151
L LQ+ + + WL + G LV +DLS N +I+ P + L++L + NR+
Sbjct: 231 LKLQHNNLTDTAWLLNYPG----LVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNRL 284
Query: 152 IELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLK 211
+ L + +L LDL N + + + RLE L L N++ +L + + +LK
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLK 342
Query: 212 KLIVETNDLEELPHTIGQCSSLREL 236
L + ND + C+SLR L
Sbjct: 343 NLTLSHNDWD--------CNSLRAL 359
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 243 LKALPEAV-GKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFAT 300
++ LP A+ +E+L++ I+++ T + ++++L + FN + +P +
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 301 TLVKMNIGNNFADLRALPRSI-GNLEMLEELDISNNQI-RVLPDSFRMLSRLRVLRVQEN 358
L+ + + DL +LPR I N L L +SNN + R+ D+F+ + L+ L++ N
Sbjct: 117 PLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
Query: 359 PL 360
L
Sbjct: 176 RL 177
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGN 172
L+ + L+LS N + V A I GL S+K LDL + +I ++ G L ++YLDL N
Sbjct: 83 NLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL--N 139
Query: 173 QISALPVALSRLVRLEELDLGSNNLSSL 200
QI+ + L+ L L+ L +G+ +S L
Sbjct: 140 QITNI-SPLAGLTNLQYLSIGNAQVSDL 166
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 59/279 (21%)
Query: 115 LSSLVSLDLSENRI--VAVPATIGGLSSLKKLDLHANRII-----ELPDSIGDLLSLVYL 167
L +L LDLS+N+I + + + G L+SLK +D +N+I EL G LS +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS--FF 179
Query: 168 DLRGNQI-SALPVALSRLVR------LEELDLGSNNLS-----SLPDSIG-----SLISL 210
L N + S + V + + LE LD+ N + + ++I SLI
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 211 KKLIVETNDLEELP----HTIGQC--SSLRELRVDYNRLKALPEAVGK-IHTLEVLSVRY 263
++ + +T SS+R L + + + +L V + + L+VL++ Y
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 264 NNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIG 322
N I ++ L +L+ L++S+N L + S + LP+
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-----------------NFYGLPK--- 339
Query: 323 NLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPL 360
+ +D+ N I ++ D +F+ L +L+ L +++N L
Sbjct: 340 ----VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 36/179 (20%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL-LSLVYLDLRGNQIS 175
SL + L+E +P + LS+L++L L+ N +GD L L+ L+ Q
Sbjct: 87 SLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN-------PMGDAGLKLLCEGLQDPQ-- 137
Query: 176 ALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLI----SLKKLIVETNDLEELPHTIGQC 230
RLE+L L NL++ + + S++ K+L++ NDL E P C
Sbjct: 138 ---------CRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHE-PGVRILC 187
Query: 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
L++ LK LE + N K L ++S +SL+ELD+S N+L
Sbjct: 188 QGLKDSACQLESLK-----------LENCGITAANCKDLCDVVASKASLQELDLSSNKL 235
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 357 ENPLEVPPRNIVEMGAQAVVQYMADLVEKR 386
+NPLE PP IV+ G +AV QY + E R
Sbjct: 1 DNPLESPPPEIVKQGKEAVRQYFQSIEEAR 30
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 158 IGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVET 217
+ LL + +LDL N++ ALP AL+ L LE L N L ++ D + +L L++L++
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCN 517
Query: 218 NDLEE 222
N L++
Sbjct: 518 NRLQQ 522
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 272 TMSSLSSLRELD-VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEML--- 327
T+ S+L+ +D + L+ + +++KM +AD+R L + +L +L
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCHL 459
Query: 328 ------EELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 361
LD+S+N++R LP + L L VL+ +N LE
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 235 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE--SV 292
L + +NRL+ALP A+ + LEVL N ++ + +++L L+EL + N L+ +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAA 525
Query: 293 PESLCFATTLVKMNIGNN 310
+ L LV +N+ N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 134 TIGGLSSLKKLD-LHANRIIELPDSI---GDLLSLVYLDLR----GNQISALPVALSRLV 185
T+ S+LK +D + A + +L +L + Y D+R ++ + L +L+
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 186 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244
+ LDL N L +LP ++ +L L+ L N LE + + L+EL + NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQ 173
+L++L SLD + I + I L+ L KL +N I L + +L YL N+
Sbjct: 40 QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNK 96
Query: 174 ISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSL 233
++ L V + L +L L+ +N L+ L S L++ L N L E+ + + L
Sbjct: 97 LTNLDV--TPLTKLTYLNCDTNKLTKLDVSQNPLLTY--LNCARNTLTEID--VSHNTQL 150
Query: 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
EL N+ KI L+V QL T S + + ELDVS N+L
Sbjct: 151 TELDCHLNK---------KITKLDVTPQT-----QLTTLDCSFNKITELDVSQNKL 192
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 158 IGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVET 217
+ LL + +LDL N++ ALP AL+ L LE L N L ++ D + +L L++L++
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCN 517
Query: 218 NDLEE 222
N L++
Sbjct: 518 NRLQQ 522
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 272 TMSSLSSLRELD-VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEML--- 327
T+ S+L+ +D + L+ + +++KM +AD+R L + +L +L
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCHL 459
Query: 328 ------EELDISNNQIRVLPDSFRMLSRLRVLRVQENPLE 361
LD+S+N++R LP + L L VL+ +N LE
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 235 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE--SV 292
L + +NRL+ALP A+ + LEVL N ++ + +++L L+EL + N L+ +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAA 525
Query: 293 PESLCFATTLVKMNIGNN 310
+ L LV +N+ N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 134 TIGGLSSLKKLD-LHANRIIELPDSI---GDLLSLVYLDLR----GNQISALPVALSRLV 185
T+ S+LK +D + A + +L +L + Y D+R ++ + L +L+
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 186 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244
+ LDL N L +LP ++ +L L+ L N LE + + L+EL + NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 179 VALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRV 238
+ L+EL L N +S L + L L++L V N L+ L C L L +
Sbjct: 57 AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFL 113
Query: 239 DYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL 289
D N L+ +++ + LE+LS+R N +K + + LS L LD+ NE+
Sbjct: 114 DNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEI 162
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 110 DSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169
DS+ L +L L + N++ ++ +G LS L+ LDLH N I + L + ++DL
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179
Query: 170 RGNQISALPV 179
G + PV
Sbjct: 180 TGQKCVNEPV 189
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN---RIVAVPATIGGLSSLKKLDLHANRI 151
L LQ+ + + WL + G LV +DLS N +I+ P + L++L + NR+
Sbjct: 237 LKLQHNNLTDTAWLLNYPG----LVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNRL 290
Query: 152 IELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLK 211
+ L + +L LDL N + + + RLE L L N++ +L + + +LK
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLK 348
Query: 212 KLIVETNDLEELPHTIGQCSSLREL 236
L + ND + C+SLR L
Sbjct: 349 NLTLSHNDWD--------CNSLRAL 365
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 47/248 (18%)
Query: 139 SSLKKLDLHANRIIELPDSI-GDLLSLVYLDLRGNQISALPVAL-SRLVRLEELDLGSNN 196
+++KL + N I LP + ++ L L L N +S+LP + +L L + +NN
Sbjct: 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158
Query: 197 LSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK--ALPEAVGKI 253
L + D + + SL+ L + +N L + + SL V YN L A+P AV ++
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEEL 216
Query: 254 HT---------------LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCF 298
L +L +++NN+ ++ L E+D+S+NELE +
Sbjct: 217 DASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKI-----M 270
Query: 299 ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358
VKM + LE L ISNN++ L + + L+VL + N
Sbjct: 271 YHPFVKM-------------------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311
Query: 359 PLEVPPRN 366
L RN
Sbjct: 312 HLLHVERN 319
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 34/134 (25%)
Query: 257 EVLSVRYNNIKQLPTTMSSLSSLREL------DVSFNELESVPESLCFATTLVKMNIGNN 310
++++ + + +++LP + L S R++ D+ E+++ + +A T+ K+ +G N
Sbjct: 54 KIVTFKNSTMRKLPAAL--LDSFRQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFN 109
Query: 311 F----------------------ADLRALPRSI-GNLEMLEELDISNNQI-RVLPDSFRM 346
DL +LPR I N L L +SNN + R+ D+F+
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 347 LSRLRVLRVQENPL 360
+ L+ L++ N L
Sbjct: 170 TTSLQNLQLSSNRL 183
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRI 151
R +N N + +IE + S + + L+ NR+ V + GL SLK L L +NRI
Sbjct: 60 RKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 152 IELP-DSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSN--NLSSLPDSIGSL 207
+ DS L S+ L L NQI+ + P A L L L+L +N N + +G
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEW 177
Query: 208 ISLKKLIVETNDLEELPH 225
+ KK IV N + P+
Sbjct: 178 LR-KKRIVTGNPRCQKPY 194
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 196 NLSSLPDSIGSLISLKKLIVETN----------DLEELPHTIGQCSSLRELRVDYNRLKA 245
N + LPD + L L+ L + N D L ++ YN L+
Sbjct: 503 NXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYXGYNNLEE 562
Query: 246 LPEAVG--KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLV 303
P + K L +L +N ++ L +++ L +L + +N++E +PE C T V
Sbjct: 563 FPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVK-LTDLKLDYNQIEEIPEDFCAFTDQV 621
Query: 304 KMNIGNNFADLRALPR--SIGNLEMLEELDISNNQI 337
+ +G + L+ +P + ++ + +D S N+I
Sbjct: 622 E-GLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKI 656
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 39/233 (16%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 176
SL + L+E +P+T+ L +L++L L N L D+ LL LD
Sbjct: 87 SLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN---PLGDAGLRLLCEGLLD-------- 135
Query: 177 LPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRE 235
P ++LE L + + L + + +LK+L V ND+ E +GQ
Sbjct: 136 -PQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQ------ 188
Query: 236 LRVDYNRLKALPEAVGKIHTL--EVLSVRYNNIKQLPTTMSSLSSLRELDVSFNEL---- 289
L ++ ++ TL E + N K L ++S +SLRELD+ N L
Sbjct: 189 ---------GLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAG 239
Query: 290 --ESVPESLCFAT---TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI 337
E P L A+ TL + R L R + E L+EL ++ N++
Sbjct: 240 IAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAGNKL 292
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 30/115 (26%)
Query: 161 LLSLVYLDLRGNQISALPVALSRLVRLEELD------------LGSNNLSSLPDSIGSLI 208
L ++ YL ++G ++ +PV +V+LEEL+ + +NN +G++
Sbjct: 103 LETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANN------EVGTIQ 156
Query: 209 SLKKL--IVETNDLEELPH-----TIGQCS-SLRELRVDYNRLKAL----PEAVG 251
++ + IV+ + E L H TIG+ SL +L VDY A P+ VG
Sbjct: 157 PVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVG 211
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 243 LKALPEAVGKIHTLEVLSVRYNNIKQLPTT--MSSLSSLRELDVSFNELESV-PESLCFA 299
LK +P + +HT E+L + N + ++ + L L +L++ N+L + P + A
Sbjct: 20 LKEIPRDI-PLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 300 TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQEN 358
+ + ++ +G N + +G L L+ L++ +NQI V+P SF L+ L L + N
Sbjct: 78 SHIQELQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 359 PLEV 362
P
Sbjct: 137 PFNC 140
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 272 TMSSLSSLRELDVSFNELESVPESLCFAT----TLVKMNIGNNFADLRALPRSIGNLEML 327
S L ++++S N++ V E+ F+ +++ NN L P + NL L
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNL 106
Query: 328 EELDISNNQIRVLPDSFRMLSRLRV-LRVQEN 358
+ L ISN I+ LPD ++ S +V L +Q+N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 272 TMSSLSSLRELDVSFNELESVPESLCFAT----TLVKMNIGNNFADLRALPRSIGNLEML 327
S L ++++S N++ V E+ F+ +++ NN L P + NL L
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNL 106
Query: 328 EELDISNNQIRVLPDSFRMLSRLRV-LRVQEN 358
+ L ISN I+ LPD ++ S +V L +Q+N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
>pdb|2CO6|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (type I)
pdb|2CO7|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (Type Ii)
Length = 221
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 21 SNPVPFLVSFIPLFSSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKL 80
S+P PFLV PLF + I++ G + ++ + +C+ V + E
Sbjct: 54 SSPAPFLV-MPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEP------ 106
Query: 81 ASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDL----SENRI-VAVPA-- 133
+ +K T DLNL D + + PD++ V+ +L + N++ V P
Sbjct: 107 ---SDTQAKGATLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPF 163
Query: 134 -------TIGG--LSSLKKLDLHANRIIELPDSI-GDLLSLVYLDLRG 171
T+GG ++ L+ + A++ + +P S GD+ V D G
Sbjct: 164 YMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIEWRVITDFGG 211
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%)
Query: 126 NRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLV 185
+ + A +G L KL + L ++G+L L +++ L A+ L
Sbjct: 14 QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP 73
Query: 186 RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA 245
+L L+ L ++G L KL +L EL +G+ +L+ Y L
Sbjct: 74 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQ 133
Query: 246 LPEAVGKI 253
L AVG++
Sbjct: 134 LKAAVGEL 141
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 166 YLDLRGNQISALPVALSRLVRLEEL------DLGSNNLSSLPDSIGSLISLKKL--IVET 217
YL +G ++ +PV +V+LEEL D ++ + + +G++ ++ + IV+
Sbjct: 108 YLSXKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKK 167
Query: 218 NDLEELPH-----TIGQCS-SLRELRVDYNRLKAL----PEAVG 251
+ E L H TIG+ SL +L VDY A P+ VG
Sbjct: 168 KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVG 211
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 176
+L L+L N I V + + LK LDL +N++ + + ++ LR N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 177 LPVALSRLVRLEELDLGSNNL 197
+ AL LE DL N
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF 249
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA 176
+L L+L N I V + + LK LDL +N++ + + ++ LR N++
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 177 LPVALSRLVRLEELDLGSNNL 197
+ AL LE DL N
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF 249
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 26/167 (15%)
Query: 185 VRLEELDLGSNNLSSLP-DSIGSLI----SLKKLIVETNDLEELPHTIGQCSSLRELRVD 239
RLE+L L +LS+ + + S++ K+L V ND+ E + C L++
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV-LCQGLKDSPCQ 200
Query: 240 YNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP-ESLCF 298
LK LE V +N + L ++S +SLREL + N+L V LC
Sbjct: 201 LEALK-----------LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249
Query: 299 A--------TTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI 337
TL G L R + E L+EL ++ N++
Sbjct: 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,625,171
Number of Sequences: 62578
Number of extensions: 397554
Number of successful extensions: 1730
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 350
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)