Query 014624
Match_columns 421
No_of_seqs 304 out of 4582
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.4E-36 249.6 -2.3 280 85-365 73-356 (1255)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-28 4.5E-33 260.8 18.9 319 38-361 89-441 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.2E-28 4.7E-33 260.7 18.1 324 30-360 57-392 (968)
4 KOG0444 Cytoskeletal regulator 100.0 2E-30 4.3E-35 242.3 -0.3 317 38-360 51-374 (1255)
5 KOG4194 Membrane glycoprotein 100.0 2E-30 4.4E-35 240.4 -0.5 344 24-370 83-438 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 8.8E-31 1.9E-35 232.8 -2.7 288 88-382 181-562 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 3.7E-30 8.1E-35 228.8 -4.8 287 90-383 45-332 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.5E-28 5.4E-33 226.5 4.8 342 16-365 99-456 (873)
9 PRK15387 E3 ubiquitin-protein 99.9 2.5E-22 5.3E-27 201.1 16.8 242 90-366 222-463 (788)
10 PRK15370 E3 ubiquitin-protein 99.9 1.1E-21 2.3E-26 197.7 15.3 248 90-362 178-429 (754)
11 KOG0618 Serine/threonine phosp 99.8 1.2E-22 2.5E-27 198.4 0.4 219 139-361 241-489 (1081)
12 PRK15370 E3 ubiquitin-protein 99.8 3.7E-20 7.9E-25 186.6 14.2 230 116-367 178-407 (754)
13 PLN03210 Resistant to P. syrin 99.8 3.3E-19 7.1E-24 191.3 21.5 258 88-359 609-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 181.5 16.3 244 90-370 201-444 (788)
15 PLN03210 Resistant to P. syrin 99.8 2.1E-19 4.6E-24 192.7 18.5 261 90-364 589-886 (1153)
16 KOG0618 Serine/threonine phosp 99.8 1.6E-21 3.6E-26 190.4 0.8 263 90-358 219-510 (1081)
17 KOG0617 Ras suppressor protein 99.8 4E-21 8.6E-26 152.5 -2.5 172 102-274 20-193 (264)
18 KOG4237 Extracellular matrix p 99.8 4.2E-20 9E-25 164.8 0.6 295 89-398 66-386 (498)
19 KOG0617 Ras suppressor protein 99.8 1.3E-20 2.7E-25 149.7 -3.6 201 159-384 30-235 (264)
20 cd00116 LRR_RI Leucine-rich re 99.8 5.9E-19 1.3E-23 164.8 6.5 250 111-360 18-319 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-17 6.7E-22 153.2 6.1 245 120-364 2-294 (319)
22 KOG0532 Leucine-rich repeat (L 99.6 9.9E-18 2.1E-22 156.3 -2.6 191 187-381 77-267 (722)
23 KOG4237 Extracellular matrix p 99.5 1.4E-16 3.1E-21 142.4 -4.0 267 100-369 53-343 (498)
24 KOG0532 Leucine-rich repeat (L 99.5 1.4E-15 3E-20 142.1 -1.3 196 113-310 72-270 (722)
25 COG4886 Leucine-rich repeat (L 99.5 1.1E-13 2.3E-18 133.1 8.9 182 112-294 112-294 (394)
26 KOG1259 Nischarin, modulator o 99.5 2.9E-14 6.4E-19 123.5 4.2 227 134-365 177-416 (490)
27 KOG1909 Ran GTPase-activating 99.5 1.6E-14 3.5E-19 127.6 1.9 250 86-365 26-315 (382)
28 COG4886 Leucine-rich repeat (L 99.4 3.8E-13 8.2E-18 129.3 9.9 195 143-363 97-292 (394)
29 KOG4658 Apoptotic ATPase [Sign 99.4 1.6E-13 3.5E-18 141.1 3.6 227 8-238 420-675 (889)
30 KOG1259 Nischarin, modulator o 99.4 9.6E-14 2.1E-18 120.4 1.3 267 109-385 175-459 (490)
31 KOG3207 Beta-tubulin folding c 99.3 2.7E-13 5.8E-18 123.3 1.0 204 135-338 117-339 (505)
32 KOG3207 Beta-tubulin folding c 99.3 4E-13 8.6E-18 122.2 1.7 197 114-310 119-336 (505)
33 PF14580 LRR_9: Leucine-rich r 99.3 2.2E-12 4.8E-17 107.0 6.0 125 229-355 17-147 (175)
34 KOG1859 Leucine-rich repeat pr 99.3 4E-14 8.7E-19 135.9 -6.5 181 231-420 164-348 (1096)
35 PF14580 LRR_9: Leucine-rich r 99.2 7.7E-12 1.7E-16 103.8 4.4 130 81-214 10-146 (175)
36 KOG1909 Ran GTPase-activating 99.2 4.8E-12 1.1E-16 112.2 0.2 229 110-368 24-290 (382)
37 KOG0531 Protein phosphatase 1, 99.1 6.8E-12 1.5E-16 120.9 0.3 241 117-364 73-321 (414)
38 KOG4658 Apoptotic ATPase [Sign 99.1 4.2E-11 9.1E-16 123.4 4.9 250 85-338 540-807 (889)
39 KOG0531 Protein phosphatase 1, 99.0 3.4E-11 7.5E-16 116.1 -2.2 218 136-360 69-289 (414)
40 KOG2982 Uncharacterized conser 98.8 1.8E-09 3.9E-14 94.0 2.5 201 91-291 46-263 (418)
41 KOG4341 F-box protein containi 98.7 7.2E-10 1.6E-14 100.7 -3.7 269 91-359 139-437 (483)
42 KOG1859 Leucine-rich repeat pr 98.7 1.9E-10 4.2E-15 111.1 -8.0 182 109-293 102-295 (1096)
43 COG5238 RNA1 Ran GTPase-activa 98.6 1.2E-08 2.6E-13 87.8 1.6 186 87-290 27-255 (388)
44 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.2E-14 95.6 -5.1 172 186-358 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.8E-09 3.9E-14 94.0 -4.1 80 210-289 187-272 (419)
46 PF13855 LRR_8: Leucine rich r 98.6 5.4E-08 1.2E-12 66.4 3.6 57 117-173 2-60 (61)
47 KOG2982 Uncharacterized conser 98.6 1.6E-08 3.5E-13 88.2 1.0 201 88-290 69-290 (418)
48 KOG4341 F-box protein containi 98.6 2.9E-09 6.2E-14 96.9 -4.0 271 86-356 160-460 (483)
49 PF13855 LRR_8: Leucine rich r 98.5 5.3E-08 1.1E-12 66.4 2.6 60 90-151 1-61 (61)
50 PLN03150 hypothetical protein; 98.5 3.6E-07 7.7E-12 92.5 9.2 106 256-362 420-529 (623)
51 PLN03150 hypothetical protein; 98.5 7.6E-07 1.6E-11 90.2 9.8 103 117-219 419-526 (623)
52 KOG4579 Leucine-rich repeat (L 98.4 2.5E-08 5.3E-13 77.2 -2.1 108 233-342 29-140 (177)
53 KOG4579 Leucine-rich repeat (L 98.4 3.9E-08 8.4E-13 76.1 -1.1 112 91-202 28-140 (177)
54 COG5238 RNA1 Ran GTPase-activa 98.3 1.7E-07 3.8E-12 80.9 1.7 246 110-364 24-319 (388)
55 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.7E-11 54.7 3.4 40 325-364 1-40 (44)
56 KOG1644 U2-associated snRNP A' 98.1 4.8E-06 1E-10 69.1 5.7 103 255-359 43-151 (233)
57 PF12799 LRR_4: Leucine Rich r 98.1 3.2E-06 6.8E-11 52.9 3.6 35 118-152 3-37 (44)
58 KOG3665 ZYG-1-like serine/thre 98.1 2.2E-06 4.7E-11 86.8 4.0 135 86-221 118-263 (699)
59 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 74.5 8.7 137 134-288 47-188 (426)
60 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 7E-11 85.6 2.9 128 139-267 122-263 (699)
61 PRK15386 type III secretion pr 98.0 3.2E-05 6.9E-10 72.5 9.0 134 111-265 47-188 (426)
62 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.6E-10 63.7 4.9 99 118-217 44-149 (233)
63 KOG2739 Leucine-rich acidic nu 97.6 2.5E-05 5.4E-10 67.6 2.1 105 230-358 42-153 (260)
64 KOG2123 Uncharacterized conser 97.6 7.2E-06 1.6E-10 71.3 -2.0 102 85-191 14-123 (388)
65 KOG1947 Leucine rich repeat pr 97.4 3.2E-05 6.9E-10 76.5 -0.5 228 114-361 186-440 (482)
66 KOG2123 Uncharacterized conser 97.2 2E-05 4.4E-10 68.6 -3.4 79 208-288 19-99 (388)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00024 5.1E-09 61.7 2.6 82 116-198 43-129 (260)
68 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 72.8 -1.8 166 137-311 186-373 (482)
69 KOG4308 LRR-containing protein 96.9 8.2E-06 1.8E-10 79.2 -10.2 46 315-360 280-330 (478)
70 PF13306 LRR_5: Leucine rich r 96.7 0.0037 8.1E-08 49.5 5.4 81 111-194 7-90 (129)
71 PF13306 LRR_5: Leucine rich r 96.4 0.0097 2.1E-07 47.0 6.4 34 251-285 32-66 (129)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0022 4.9E-08 33.3 0.4 21 326-346 1-21 (22)
73 KOG4308 LRR-containing protein 95.8 0.0001 2.2E-09 71.7 -9.2 80 118-197 89-184 (478)
74 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.4E-07 28.4 1.1 16 326-341 2-17 (17)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.0089 1.9E-07 31.0 0.3 11 142-152 3-13 (22)
76 KOG0473 Leucine-rich repeat pr 92.3 0.0046 1E-07 52.9 -5.5 85 274-360 39-123 (326)
77 smart00370 LRR Leucine-rich re 91.7 0.17 3.7E-06 27.2 2.2 18 325-342 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 91.7 0.17 3.7E-06 27.2 2.2 18 325-342 2-19 (26)
79 KOG3864 Uncharacterized conser 91.2 0.055 1.2E-06 45.5 -0.3 38 323-360 149-188 (221)
80 KOG0473 Leucine-rich repeat pr 90.8 0.0067 1.5E-07 51.9 -6.1 85 114-198 40-124 (326)
81 smart00370 LRR Leucine-rich re 89.4 0.41 8.9E-06 25.7 2.3 23 347-369 1-23 (26)
82 smart00369 LRR_TYP Leucine-ric 89.4 0.41 8.9E-06 25.7 2.3 23 347-369 1-23 (26)
83 KOG4242 Predicted myosin-I-bin 88.8 3.3 7.1E-05 39.8 9.1 110 42-151 165-280 (553)
84 smart00364 LRR_BAC Leucine-ric 85.4 0.55 1.2E-05 25.3 1.3 18 325-342 2-19 (26)
85 KOG3864 Uncharacterized conser 82.5 0.16 3.6E-06 42.7 -2.3 59 232-290 102-165 (221)
86 PF13516 LRR_6: Leucine Rich r 80.3 0.8 1.7E-05 24.0 0.7 14 325-338 2-15 (24)
87 TIGR00864 PCC polycystin catio 77.7 1.7 3.6E-05 50.7 2.8 36 331-366 1-37 (2740)
88 smart00365 LRR_SD22 Leucine-ri 77.1 2.1 4.6E-05 23.1 1.7 16 325-340 2-17 (26)
89 KOG3763 mRNA export factor TAP 75.9 1.6 3.5E-05 42.6 1.8 63 275-338 216-283 (585)
90 KOG3763 mRNA export factor TAP 74.0 1.9 4E-05 42.2 1.7 65 88-152 216-283 (585)
91 smart00367 LRR_CC Leucine-rich 73.8 2.4 5.1E-05 22.7 1.4 14 325-338 2-16 (26)
92 smart00368 LRR_RI Leucine rich 65.6 5.4 0.00012 21.8 1.7 13 326-338 3-15 (28)
93 KOG4242 Predicted myosin-I-bin 40.9 89 0.0019 30.5 6.4 18 44-61 216-233 (553)
No 1
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=249.62 Aligned_cols=280 Identities=28% Similarity=0.451 Sum_probs=171.6
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLS 163 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~ 163 (421)
.++.++.||.+.+..|++... .+|..+..+..|+.||+++|++.+.|..+..-.++-.|+|++|+|..||. .+.++..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhccccccC-CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 455677788888887777654 35667778888888888888888888878888888888888888888875 3457777
Q ss_pred CcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCC--CCcchhcCCcCccEEEccc
Q 014624 164 LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLE--ELPHTIGQCSSLRELRVDY 240 (421)
Q Consensus 164 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~ 240 (421)
|-+||+++|.+..+|..+..+..|+.|.+++|.+..+ -..+.++++|+.|.+++.+-+ .+|..+..+.+|..++++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 8888888888888887777777888888887765422 122334445555555544322 4455555555555555555
Q ss_pred CCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchh
Q 014624 241 NRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRS 320 (421)
Q Consensus 241 ~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 320 (421)
|.+..+|+.+..+++|+.|++++|+++.+........+|++|++|+|+++.+|+.++.+++|+.|.+.+|....+.+|.+
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 55555555555555555555555555554444444455555555555555555555555555555555555555555555
Q ss_pred hcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcH
Q 014624 321 IGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 321 ~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
++++.+|+.+..++|.+.-+|++++.|+.|+.|.|+.|++-..|+
T Consensus 312 IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechh
Confidence 555545544444444444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.1e-28 Score=260.85 Aligned_cols=319 Identities=29% Similarity=0.468 Sum_probs=146.7
Q ss_pred HhhhhHHHHHHhcccccccCccceee-ecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCC
Q 014624 38 CLLLTDFLILQLGSIIFRNKVPIMIM-CMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLS 116 (421)
Q Consensus 38 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 116 (421)
+..+++|+.|+++++.+.+.+|..+. .+..+.. -.++...+........+++|++|++++|.+.. .+|..+..++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~--L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY--LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG--EIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCE--EECcCCccccccCccccCCCCEEECcCCcccc--cCChHHhcCC
Confidence 45566677777777776666665433 1111100 00000001111111234455555555554432 2244455555
Q ss_pred CCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCCCCCcEEECcCCCCC-CCchhhcCCCCCCEEECC
Q 014624 117 SLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEELDLG 193 (421)
Q Consensus 117 ~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~ 193 (421)
+|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 5555555555543 23445555555555555555544 34445555555555555555444 344444555555555555
Q ss_pred CCCCC-CCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcccCCCC-Cchh----------------------
Q 014624 194 SNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLK-ALPE---------------------- 248 (421)
Q Consensus 194 ~~~l~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~~l~-~~~~---------------------- 248 (421)
+|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 55443 33444444444454444444443 23333444444444444444433 2333
Q ss_pred --hhhccCCCCeeecccccCCc-CCcccCCCCCCcEEECcCCCCC-CCchhhhccCcccEEEccCCccCCCccchhhcCC
Q 014624 249 --AVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNL 324 (421)
Q Consensus 249 --~l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 324 (421)
.+..+++|+.|++++|.+.. +|..++.+++|+.|++++|.++ .+|..++..++|+.|++.+|... ..+|..+..+
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE-GEIPKSLGAC 403 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec-ccCCHHHhCC
Confidence 34444444444444444432 3344444444444444444443 23333333444444444443211 2344445555
Q ss_pred CCCcEEeCccCCCC-ccchhhcCCCCCCEEEccCCCCC
Q 014624 325 EMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE 361 (421)
Q Consensus 325 ~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~ 361 (421)
++|+.|++++|.++ .+|..+..++.|+.|++++|.+.
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 55555555555555 34444555555555555555443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.2e-28 Score=260.70 Aligned_cols=324 Identities=27% Similarity=0.413 Sum_probs=251.6
Q ss_pred cccchhHHHhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhh-hhh--hccCCCCCcEEEcCCccccccc
Q 014624 30 FIPLFSSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLA-SLI--EVSSKKGTRDLNLQNKLMDNIE 106 (421)
Q Consensus 30 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~~ 106 (421)
.+.|....|....+++.|+++++.+.+.++..+..+..+..-. ++...+. .++ ....+++|++|++++|.+.+.
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~--Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~- 133 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN--LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS- 133 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEE--CCCCccCCcCChHHhccCCCCCEEECcCCccccc-
Confidence 3434333354456789999999999998876555443322110 0000111 111 123678999999999887652
Q ss_pred ccchhhcCCCCCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCCCCCcEEECcCCCCC-CCchhhcC
Q 014624 107 WLPDSIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSR 183 (421)
Q Consensus 107 ~l~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~ 183 (421)
+|. ..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..
T Consensus 134 -~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 210 (968)
T PLN00113 134 -IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210 (968)
T ss_pred -cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC
Confidence 233 46889999999999987 56888999999999999999887 67888999999999999999987 57889999
Q ss_pred CCCCCEEECCCCCCC-CCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcccCCCC-CchhhhhccCCCCeee
Q 014624 184 LVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLK-ALPEAVGKIHTLEVLS 260 (421)
Q Consensus 184 ~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~ 260 (421)
+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 999999999999988 67888999999999999999887 56778999999999999999987 5778888999999999
Q ss_pred cccccCCc-CCcccCCCCCCcEEECcCCCCC-CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC
Q 014624 261 VRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR 338 (421)
Q Consensus 261 l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 338 (421)
+++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|... ..+|..+..+++|+.|++++|.++
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcEEECCCCeeE
Confidence 99999875 6778888999999999999887 56777888889999999888532 456777777788888888887776
Q ss_pred -ccchhhcCCCCCCEEEccCCCC
Q 014624 339 -VLPDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 339 -~l~~~~~~l~~L~~L~l~~n~~ 360 (421)
.+|..+..+++|+.|++++|++
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEe
Confidence 4455555444555555555444
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-30 Score=242.26 Aligned_cols=317 Identities=23% Similarity=0.334 Sum_probs=265.6
Q ss_pred HhhhhHHHHHHhcccccccCccceeeecccCCC-CCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCC
Q 014624 38 CLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQ-DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLS 116 (421)
Q Consensus 38 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 116 (421)
++.+.+|++|.++.|.+..... .+..+.++.. ..+.-.+....--.++-.+..|+.|+++.|.+.. +|..+...+
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhG-ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E---vP~~LE~AK 126 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHG-ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE---VPTNLEYAK 126 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhh-hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh---cchhhhhhc
Confidence 6667788888888887654322 1222222111 0011111111111245577889999999986655 467888999
Q ss_pred CCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc-hhhcCCCCCCEEECCC
Q 014624 117 SLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGS 194 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~ 194 (421)
++-+|++++|.+.++|. .|.++..|-+|+|++|.+..+|+.+.++.+|++|.+++|.+..+. ..+..++.|+.|.+++
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 99999999999999975 667899999999999999999999999999999999999766321 2345667888999999
Q ss_pred CCCC--CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcc
Q 014624 195 NNLS--SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT 272 (421)
Q Consensus 195 ~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~ 272 (421)
++-+ .+|..+..+.+|+.++++.|.+..+|..+.++++|+.|++++|+++.+........+|++|+++.|+++.+|+.
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 8655 78899999999999999999999999999999999999999999998877778889999999999999999999
Q ss_pred cCCCCCCcEEECcCCCCC--CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCC
Q 014624 273 MSSLSSLRELDVSFNELE--SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRL 350 (421)
Q Consensus 273 l~~~~~L~~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L 350 (421)
+..++.|+.|.+.+|+++ .+|.+++.+..|+.+...+| .++.+|++++.|..|+.|.|+.|.+..+|+.+.-++.|
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN--~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN--KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDL 364 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc--ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCc
Confidence 999999999999999877 89999999999999999999 78899999999999999999999999999999999999
Q ss_pred CEEEccCCCC
Q 014624 351 RVLRVQENPL 360 (421)
Q Consensus 351 ~~L~l~~n~~ 360 (421)
++|++..||-
T Consensus 365 ~vLDlreNpn 374 (1255)
T KOG0444|consen 365 KVLDLRENPN 374 (1255)
T ss_pred ceeeccCCcC
Confidence 9999999974
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2e-30 Score=240.36 Aligned_cols=344 Identities=24% Similarity=0.333 Sum_probs=214.9
Q ss_pred ccceeecccch-hHHHhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCccc
Q 014624 24 VPFLVSFIPLF-SSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLM 102 (421)
Q Consensus 24 ~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 102 (421)
+-++.+.+... ...+.++++|+.+.+..|.+. .+|........+..-.-.-.......-..+...+.||.|+++.|.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 33444443322 233678888888888877653 4454322222110000000000001111233445566666666655
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCC-ch
Q 014624 103 DNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISAL-PV 179 (421)
Q Consensus 103 ~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l-~~ 179 (421)
..+. ...|..-.++++|++++|.++.+ ...|.++.+|..|.|++|.++.+|. .|.++++|+.|++..|.+..+ -.
T Consensus 162 s~i~--~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 162 SEIP--KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hccc--CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 5544 23444445666666666666655 3456666666666666666666654 455566666666666666543 22
Q ss_pred hhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCc-chhcCCcCccEEEcccCCCCCch-hhhhccCCC
Q 014624 180 ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYNRLKALP-EAVGKIHTL 256 (421)
Q Consensus 180 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L 256 (421)
.|..++.|+.|.+.+|++..+. +.+..+.++++|++..|.+..+. .++..+..|+.|++++|.+..+. +.+..+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 4566666666666666666553 34566677777777777776553 35667777777788877777553 566777788
Q ss_pred CeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCc--cCCCccchhhcCCCCCcEEeC
Q 014624 257 EVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNF--ADLRALPRSIGNLEMLEELDI 332 (421)
Q Consensus 257 ~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~L 332 (421)
+.|+|+.|.+++++ ..|..+..|++|+|++|.++.+.+ .+..+++|++|+|++|. ..+++-...|..++.|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 88888888888765 467777778888888888776654 45567888888888873 223344456777888888888
Q ss_pred ccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHHHhc
Q 014624 333 SNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVEM 370 (421)
Q Consensus 333 ~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 370 (421)
.||+|..+|. .|.+++.|+.|+|.+|++..+..+.|..
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 8888888885 7888888888888888887666555543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=8.8e-31 Score=232.77 Aligned_cols=288 Identities=33% Similarity=0.507 Sum_probs=204.6
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhh-CCCCCcE
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVY 166 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~-~l~~L~~ 166 (421)
.++.|++|+...|-.. .+|+.++.+..|+.|++..|++..+| .|.+|..|+++.++.|.+..+|+... +++++..
T Consensus 181 ~m~~L~~ld~~~N~L~---tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLE---TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHhcccchhhhh---cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 3667888888776444 45678888889999999999988887 57888888888888888888876554 7888889
Q ss_pred EECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchh-------------------
Q 014624 167 LDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI------------------- 227 (421)
Q Consensus 167 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------- 227 (421)
||+++|++++.|..+.-+.+|+.||+++|.++.+|..++++ +|+.|.+.||++..+...+
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 99999998888888888888889999999888888888888 7888877777653111000
Q ss_pred -----------------------cCCcC--------------------------ccEEEcccCCCCCch-----------
Q 014624 228 -----------------------GQCSS--------------------------LRELRVDYNRLKALP----------- 247 (421)
Q Consensus 228 -----------------------~~~~~--------------------------L~~L~l~~~~l~~~~----------- 247 (421)
....+ +..++++.|++..+|
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 00111 333444444443333
Q ss_pred -------------hhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCC
Q 014624 248 -------------EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADL 314 (421)
Q Consensus 248 -------------~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (421)
..+..+++|..|++++|-+.++|..++.+..|+.|+++.|++..+|...-.+..++.+-.++| .+
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n--qi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN--QI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc--cc
Confidence 233334444455555554444544444444455555555544444444444444444444444 33
Q ss_pred Cccch-hhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHHH
Q 014624 315 RALPR-SIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADL 382 (421)
Q Consensus 315 ~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 382 (421)
..+++ .+.++.+|.+|||.+|.+..+|..++.|.+|++|.++|||+..+...+.-.|+.++..|+++.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHhccChHHHHHHhccc
Confidence 34443 478899999999999999999999999999999999999999998999999999999998764
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=3.7e-30 Score=228.81 Aligned_cols=287 Identities=35% Similarity=0.586 Sum_probs=270.2
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
..+..+.++.|....+. +.+.++..++++++.+|.+.++|++++.+..++.++.++|+++.+|+.++.+..|..+++
T Consensus 45 v~l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhcc---HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 46788899988776654 577899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
+.|.+..++..++.+..++.++..+|++.++|..+..+.++..+++.+|.+...+...-.+..|+++++..|-++.+|..
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~ 201 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE 201 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh
Confidence 99999999999999999999999999999999999999999999999999999888777799999999999999999999
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhh-ccCcccEEEccCCccCCCccchhhcCCCCCc
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLC-FATTLVKMNIGNNFADLRALPRSIGNLEMLE 328 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 328 (421)
++.+.+|..|++..|++..+| .|.+|..|++|+++.|.++.+|...+ .++++..|++.+| .++.+|..+..+.+|+
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN--klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN--KLKEVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc--ccccCchHHHHhhhhh
Confidence 999999999999999999998 89999999999999999999988766 7999999999999 7889999999999999
Q ss_pred EEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHHHh
Q 014624 329 ELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLV 383 (421)
Q Consensus 329 ~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (421)
+||+++|.|+.+|..++.+ +|+.|-+.|||+..+-.++.+.|+..+.+|++...
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999999999999844
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-28 Score=226.54 Aligned_cols=342 Identities=27% Similarity=0.365 Sum_probs=266.0
Q ss_pred eeecCCCCccceeec---ccchhHHHhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCC
Q 014624 16 YTIPLSNPVPFLVSF---IPLFSSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGT 92 (421)
Q Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (421)
|..|.++.+.+..+. ||.+.+ -..+|+.|+|.+|.+...-...+..+-.+..-+-......-..........++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~---~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGH---ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccc---cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 556667766666664 444422 22345555555555544333322222221111111111111111234455689
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEECc
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLR 170 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~ 170 (421)
++|++++|.+.+++ ...|..+.+|.+|.++.|.++.+|. .|.++++|+.|+|..|.|..+ .-.|..+++|+.|.+.
T Consensus 176 ~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 176 KKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred eEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 99999999999987 4688899999999999999999965 788899999999999988855 2468889999999999
Q ss_pred CCCCCCCch-hhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCCCCCch
Q 014624 171 GNQISALPV-ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 171 ~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
.|++..+.. .|..+.++++|++..|++..+. +.+.+++.|+.|+++.|.+..+ ++.+..+++|+.|++++|+++.++
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 999998754 6788999999999999999774 5578999999999999999976 567888999999999999999887
Q ss_pred -hhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCC----CCchhhhccCcccEEEccCCccCCCccch-h
Q 014624 248 -EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELE----SVPESLCFATTLVKMNIGNNFADLRALPR-S 320 (421)
Q Consensus 248 -~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 320 (421)
..+..+..|+.|+|++|.++.+. ..|.++++|++|||++|.++ +-...+..+++|++|.+.+| .++.+|. +
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krA 411 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRA 411 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc--eeeecchhh
Confidence 46788899999999999999875 57899999999999999876 43456777999999999999 5666664 7
Q ss_pred hcCCCCCcEEeCccCCCCccc-hhhcCCCCCCEEEccCCCCCCCcH
Q 014624 321 IGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 321 ~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
|.++++|+.|||.+|.|.++. ..|..+ +|+.|.+..-.+-|+|.
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 899999999999999999775 578888 99999998888888775
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=2.5e-22 Score=201.13 Aligned_cols=242 Identities=31% Similarity=0.384 Sum_probs=196.0
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
++|+.|++.+|.+..+.. ..++|++|++++|.++.+|.. .++|+.|++++|.++.+|.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEEC
Confidence 478999999887776542 247899999999999888643 46889999999988877653 367889999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
++|+++.+|.. .++|+.|++++|++..+|.. ...|+.|.+++|.++.+|.. ..+|+.|++++|+++.+|..
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred cCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCCCccCCCCCC
Confidence 99999988753 46899999999999988753 24578889999999887642 25799999999999988753
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
..+|+.|++++|.++.+|.. .++|+.|++++|.++.+|.. .++|+.|++++| .+..+|.. ..+|+.
T Consensus 361 ---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N--~LssIP~l---~~~L~~ 426 (788)
T PRK15387 361 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN--RLTSLPML---PSGLLS 426 (788)
T ss_pred ---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCC--cCCCCCcc---hhhhhh
Confidence 35788899999999988764 35799999999999987753 468999999999 45567753 346889
Q ss_pred EeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 330 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 330 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
|++++|+|+.+|..+..+++|+.|++++|+++.....
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 9999999999999999999999999999999866544
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=1.1e-21 Score=197.71 Aligned_cols=248 Identities=28% Similarity=0.462 Sum_probs=205.7
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
.+...|+++++.+..+ |..+. +.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsL---P~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTI---PACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcC---Ccccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 4678899998766554 44442 579999999999999987554 589999999999999987653 58999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
++|.+..+|..+. .+|+.|++++|++..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++.+|..
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc
Confidence 9999999987765 589999999999998887654 589999999999998876443 4789999999999988765
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
+. ++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+ +++|+.|++++| .+..+|..+. ..|+.
T Consensus 323 l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N--~Lt~LP~~l~--~sL~~ 392 (754)
T PRK15370 323 LP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN--ALTNLPENLP--AALQI 392 (754)
T ss_pred cc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC--cCCCCCHhHH--HHHHH
Confidence 43 689999999999999987664 79999999999999888755 479999999999 5667887654 37999
Q ss_pred EeCccCCCCccchhhc----CCCCCCEEEccCCCCCC
Q 014624 330 LDISNNQIRVLPDSFR----MLSRLRVLRVQENPLEV 362 (421)
Q Consensus 330 L~L~~n~l~~l~~~~~----~l~~L~~L~l~~n~~~~ 362 (421)
|++++|+++.+|..+. .++++..|++.+|++..
T Consensus 393 LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 393 MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 9999999998886543 45889999999999873
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.2e-22 Score=198.39 Aligned_cols=219 Identities=29% Similarity=0.468 Sum_probs=158.7
Q ss_pred CCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccc
Q 014624 139 SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETN 218 (421)
Q Consensus 139 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n 218 (421)
.+|+++++++++++.+|+.+..+.+|+.++..+|.++.+|..+....+|+.|.+..|.+..+|......++|++|++..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 34555566665555555555555666666665555555555555555555555555555555555555555555555555
Q ss_pred cCCCCcchh--------------------------cCCcCccEEEcccCCCCC-chhhhhccCCCCeeecccccCCcCCc
Q 014624 219 DLEELPHTI--------------------------GQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNIKQLPT 271 (421)
Q Consensus 219 ~~~~~~~~~--------------------------~~~~~L~~L~l~~~~l~~-~~~~l~~~~~L~~L~l~~n~l~~l~~ 271 (421)
.+..+|..+ ...+.|+.|.+.+|.+++ .-..+.++++|+.|+|++|.+.++|+
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 554433211 124567888888999883 33567888999999999999999985
Q ss_pred -ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCc--cchhhcCCC
Q 014624 272 -TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV--LPDSFRMLS 348 (421)
Q Consensus 272 -~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~ 348 (421)
.+.+++.|++|+||+|+++.+|..+..+..|++|...+| .+..+| .+..++.|+.+|++.|+++. ++..... |
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p 476 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-P 476 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-c
Confidence 678999999999999999999999999999999999888 677888 67889999999999999994 4443333 8
Q ss_pred CCCEEEccCCCCC
Q 014624 349 RLRVLRVQENPLE 361 (421)
Q Consensus 349 ~L~~L~l~~n~~~ 361 (421)
+|++|+++||...
T Consensus 477 ~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRL 489 (1081)
T ss_pred ccceeeccCCccc
Confidence 9999999999863
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=3.7e-20 Score=186.65 Aligned_cols=230 Identities=26% Similarity=0.468 Sum_probs=193.5
Q ss_pred CCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCC
Q 014624 116 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSN 195 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 195 (421)
.+.+.|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. +.|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 457899999999999887553 589999999999999987654 699999999999999987654 57999999999
Q ss_pred CCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCC
Q 014624 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 275 (421)
Q Consensus 196 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~ 275 (421)
.+..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+. .+|+.|++++|.++.+|..+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc-
Confidence 9999987654 479999999999998876553 589999999999998876543 479999999999999876543
Q ss_pred CCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEc
Q 014624 276 LSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRV 355 (421)
Q Consensus 276 ~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l 355 (421)
++|+.|++++|.++.+|..+ +++|+.|++++| .+..+|..+. ++|+.|+|++|.++.+|..+. ..|+.|++
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N--~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASL--PPELQVLDVSKN--QITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQA 395 (754)
T ss_pred -ccceeccccCCccccCChhh--cCcccEEECCCC--CCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhh
Confidence 68999999999999988765 379999999999 4556776553 689999999999999998665 37999999
Q ss_pred cCCCCCCCcHHH
Q 014624 356 QENPLEVPPRNI 367 (421)
Q Consensus 356 ~~n~~~~~~~~~ 367 (421)
++|.+...|..+
T Consensus 396 s~N~L~~LP~sl 407 (754)
T PRK15370 396 SRNNLVRLPESL 407 (754)
T ss_pred ccCCcccCchhH
Confidence 999998877543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.3e-19 Score=191.27 Aligned_cols=258 Identities=26% Similarity=0.414 Sum_probs=166.7
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCc-CCcCchhhcCCCCCcEEEccCC-CCCCCchhhhCCCCCc
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVAVPATIGGLSSLKKLDLHAN-RIIELPDSIGDLLSLV 165 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~l~~l~~L~~L~L~~~-~i~~l~~~~~~l~~L~ 165 (421)
.+.+|++|++.++.+.. ++..+..+++|+.|+++++. +..+| .+..+++|++|++++| .+..+|..+..+++|+
T Consensus 609 ~~~~L~~L~L~~s~l~~---L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK---LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred CccCCcEEECcCccccc---cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 34567777777765443 34455667777777777664 44444 3566777777777765 3446676777777777
Q ss_pred EEECcCC-CCCCCchhhcCCCCCCEEECCCCC-CCCCccccCCCccccccccccccCCCCcchh----------------
Q 014624 166 YLDLRGN-QISALPVALSRLVRLEELDLGSNN-LSSLPDSIGSLISLKKLIVETNDLEELPHTI---------------- 227 (421)
Q Consensus 166 ~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------------- 227 (421)
.|++++| .+..+|..+ ++++|+.|++++|. +..+|.. ..+|+.|++++|.+..+|..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchh
Confidence 7777775 455666544 56667777776663 2233321 235566666666655544322
Q ss_pred --------------cCCcCccEEEcccCC-CCCchhhhhccCCCCeeecccc-cCCcCCcccCCCCCCcEEECcCCC-CC
Q 014624 228 --------------GQCSSLRELRVDYNR-LKALPEAVGKIHTLEVLSVRYN-NIKQLPTTMSSLSSLRELDVSFNE-LE 290 (421)
Q Consensus 228 --------------~~~~~L~~L~l~~~~-l~~~~~~l~~~~~L~~L~l~~n-~l~~l~~~l~~~~~L~~L~L~~n~-l~ 290 (421)
...++|+.|++++|. +..+|..+.++++|+.|++++| .+..+|..+ .+++|++|++++|. +.
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 112456666666654 3456666777777777777776 455566544 56777777777764 33
Q ss_pred CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccC-CCCccchhhcCCCCCCEEEccCCC
Q 014624 291 SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRVLPDSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~l~~n~ 359 (421)
.+|. ...+|+.|++++| .+..+|.++..+++|+.|++++| +++.+|..+..+++|+.+++++|+
T Consensus 840 ~~p~---~~~nL~~L~Ls~n--~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 840 TFPD---ISTNISDLNLSRT--GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---cccccCEeECCCC--CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4433 2356778888777 56678888888888888888886 788888777888888888888885
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.4e-19 Score=181.53 Aligned_cols=244 Identities=31% Similarity=0.391 Sum_probs=198.4
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
.+-..|+++++.+.. +|..+. ++|+.|++.+|.++.+|. ..++|++|++++|+++.+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lts---LP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT---LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc---CCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 456789999987664 455554 489999999999998875 358999999999999988753 478999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
++|.++.+|.. ...|+.|++++|++..+|.. .++|+.|++++|.+..++.. ...|+.|++++|+++.+|..
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc
Confidence 99999988763 35788999999999988763 46799999999999987653 34688899999999988752
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
..+|+.|++++|+++.+|.. .++|+.|++++|.++.+|.. +.+|+.|++++| .+..+|.. .++|+.
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N--~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN--RLTSLPVL---PSELKE 406 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCC--cccCCCCc---ccCCCE
Confidence 25899999999999998863 36788999999999988754 467999999999 45566643 367999
Q ss_pred EeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHHHHhc
Q 014624 330 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEM 370 (421)
Q Consensus 330 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 370 (421)
|++++|+++.+|.. ..+|+.|++++|.++.+|..+..+
T Consensus 407 LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L 444 (788)
T PRK15387 407 LMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHL 444 (788)
T ss_pred EEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhc
Confidence 99999999999864 347889999999999888765543
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=2.1e-19 Score=192.71 Aligned_cols=261 Identities=22% Similarity=0.354 Sum_probs=203.6
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCC-CCCCchhhhCCCCCcEEE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANR-IIELPDSIGDLLSLVYLD 168 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~-i~~l~~~~~~l~~L~~L~ 168 (421)
.+||.|.+.++.+..+ |..+ ...+|++|++.++.+..++..+..+++|++|+++++. +..+| .+..+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~~l---P~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCM---PSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCCCC---CCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 4799999998765544 5555 5789999999999999988888899999999999874 56776 477899999999
Q ss_pred CcCCC-CCCCchhhcCCCCCCEEECCCC-CCCCCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcccCCCCC
Q 014624 169 LRGNQ-ISALPVALSRLVRLEELDLGSN-NLSSLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKA 245 (421)
Q Consensus 169 l~~~~-l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~~l~~ 245 (421)
+++|. +..+|..+..+++|+.|++++| .+..+|..+ .+++|+.|++++|... .+|. ...+|+.|++++|.+..
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE 739 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc
Confidence 99974 6688999999999999999997 566777655 7889999999987533 4433 24578899999988877
Q ss_pred chhhh------------------------------hccCCCCeeeccccc-CCcCCcccCCCCCCcEEECcCC-CCCCCc
Q 014624 246 LPEAV------------------------------GKIHTLEVLSVRYNN-IKQLPTTMSSLSSLRELDVSFN-ELESVP 293 (421)
Q Consensus 246 ~~~~l------------------------------~~~~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~L~~n-~l~~~~ 293 (421)
+|..+ ..+++|+.|++++|. +..+|..++++++|+.|++++| .+..+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 66432 112467777777774 4457888888888999999887 466776
Q ss_pred hhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCC-CCCCc
Q 014624 294 ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENP-LEVPP 364 (421)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~-~~~~~ 364 (421)
... .+++|+.|++++|. .+..+|.. .++|+.|+|++|.++.+|.++..+++|+.|++++|+ +...+
T Consensus 820 ~~~-~L~sL~~L~Ls~c~-~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCS-RLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCC-CccccCEEECCCCC-cccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 655 67888899998875 33444432 368999999999999999999999999999999964 44443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-21 Score=190.44 Aligned_cols=263 Identities=29% Similarity=0.422 Sum_probs=203.1
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
+.++.|+.+.|.+.... ......+|++++++++.+..+|..+..+.+|+.++..+|.++.+|..+....+|+.|++
T Consensus 219 ~~l~~L~a~~n~l~~~~----~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLD----VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeec----cccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 45666666665554321 11234568888888888888887788888888888888888877777777788888888
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCcccc--------------------------CCCccccccccccccCCC-
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI--------------------------GSLISLKKLIVETNDLEE- 222 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------------------~~l~~L~~L~l~~n~~~~- 222 (421)
..|.+..+|.....+..|++|++..|.+..+|+.+ ...+.|+.|.+.+|.++.
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 88888877777777778888888887777665432 123457788888888873
Q ss_pred CcchhcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCc
Q 014624 223 LPHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATT 301 (421)
Q Consensus 223 ~~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 301 (421)
.-..+.+..+|+.|+|++|++..+|+ .+.++..|+.|++++|+++.+|..+..++.|++|...+|++..+| .+..++.
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 33567788999999999999999985 578899999999999999999999999999999999999999998 7889999
Q ss_pred ccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccc-hhhcCCCCCCEEEccCC
Q 014624 302 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQEN 358 (421)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n 358 (421)
|+.++++.|...-..++..... ++|++||++||.=..+. ..+..+.++...++.-+
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9999999997666666655544 89999999999533332 35666666666666655
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=4e-21 Score=152.55 Aligned_cols=172 Identities=34% Similarity=0.548 Sum_probs=141.2
Q ss_pred cccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhh
Q 014624 102 MDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVAL 181 (421)
Q Consensus 102 ~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~ 181 (421)
+.++..++ .+..+.+++.|.+++|+++.+|+.+..+.+|+.|++.+|++.++|.+++++++|++|++.-|.+..+|..|
T Consensus 20 iSsf~~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 20 ISSFEELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccHhhcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 33444444 34477788888888888888888888888899999998888888888888899999998888888888888
Q ss_pred cCCCCCCEEECCCCCCC--CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCee
Q 014624 182 SRLVRLEELDLGSNNLS--SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVL 259 (421)
Q Consensus 182 ~~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L 259 (421)
+.+|.|+.||+++|.+. .+|+.+..+..|+.|++++|.+.-+|..++++.+|+.|.+..|.+-++|..++.+..|+.|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 88899999999888887 5788888888888888888888888888888888888888888888888888888888888
Q ss_pred ecccccCCcCCcccC
Q 014624 260 SVRYNNIKQLPTTMS 274 (421)
Q Consensus 260 ~l~~n~l~~l~~~l~ 274 (421)
++.+|.++-+|..++
T Consensus 179 hiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 179 HIQGNRLTVLPPELA 193 (264)
T ss_pred hcccceeeecChhhh
Confidence 888887777765544
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=4.2e-20 Score=164.80 Aligned_cols=295 Identities=26% Similarity=0.364 Sum_probs=206.0
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccC-CCCCCCch-hhhCCCCCc
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHA-NRIIELPD-SIGDLLSLV 165 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~-~~i~~l~~-~~~~l~~L~ 165 (421)
.+....+.+..|.+..+. +..|+.+++|++||+++|.++.+ |.+|.+++.|..|-+.+ |+|+++|. .|..+..|+
T Consensus 66 P~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 456888999998888877 67899999999999999999988 77999999988887766 88998875 677888999
Q ss_pred EEECcCCCCCCCc-hhhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccccCCC---C----------cchhcCC
Q 014624 166 YLDLRGNQISALP-VALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEE---L----------PHTIGQC 230 (421)
Q Consensus 166 ~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~---~----------~~~~~~~ 230 (421)
-|.+.-|.+..++ ..+..++.+..|.+..|.+..++. .+..+..++.+.+..|.+.. + +..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 9998888888665 467888999999999998888775 67788888888877776321 1 1112222
Q ss_pred cCccEEEcccCCCCCchhhhhccCCCCee--eccc-c-cCCcCC-cccCCCCCCcEEECcCCCCCCCc-hhhhccCcccE
Q 014624 231 SSLRELRVDYNRLKALPEAVGKIHTLEVL--SVRY-N-NIKQLP-TTMSSLSSLRELDVSFNELESVP-ESLCFATTLVK 304 (421)
Q Consensus 231 ~~L~~L~l~~~~l~~~~~~l~~~~~L~~L--~l~~-n-~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~L~~ 304 (421)
.......+.+.++..+++.-..+ .++.+ .++. + ....-| ..|..+++|++|++++|+++.+. .++.....++.
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 22222233333444333211111 12222 1111 1 122223 35778888888888888888664 46677888888
Q ss_pred EEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCccc-hhhcCCCCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHHH
Q 014624 305 MNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADL 382 (421)
Q Consensus 305 L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 382 (421)
|.|..|. +..+. ..|.++.+|+.|+|.+|+|+.+. ..|..+.+|..|++-.||+.|.|.- .|++.+
T Consensus 303 L~L~~N~--l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l----------~wl~~W 370 (498)
T KOG4237|consen 303 LYLTRNK--LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL----------AWLGEW 370 (498)
T ss_pred hhcCcch--HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch----------HHHHHH
Confidence 8888883 33332 35788999999999999999764 5789999999999999999999853 355555
Q ss_pred hhhcccCCcccccccc
Q 014624 383 VEKRDAKTQPVKQKKS 398 (421)
Q Consensus 383 ~~~~~~~~~~~~~~~~ 398 (421)
.++....+.+..+...
T Consensus 371 lr~~~~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPG 386 (498)
T ss_pred HhhCCCCCCCCCCCCc
Confidence 5555544444444333
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-20 Score=149.69 Aligned_cols=201 Identities=33% Similarity=0.508 Sum_probs=149.1
Q ss_pred hCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEc
Q 014624 159 GDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRV 238 (421)
Q Consensus 159 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 238 (421)
..+.+++.|.+++|+++.+|..+..+.+|+.|++++|++.++|..+++++.|++|+++-|.+..+|..++.++.|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCC--CchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCc
Q 014624 239 DYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRA 316 (421)
Q Consensus 239 ~~~~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 316 (421)
++|.+. .+|..+..+..|+.|.+++|.+.-+|..++.+.+|+.|.+.+|.+-.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~------------------------- 164 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS------------------------- 164 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-------------------------
Confidence 777665 55666666666777777777776666666666666666666666544
Q ss_pred cchhhcCCCCCcEEeCccCCCCccchhhcCCC---CCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHHHhh
Q 014624 317 LPRSIGNLEMLEELDISNNQIRVLPDSFRMLS---RLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVE 384 (421)
Q Consensus 317 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~---~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (421)
+|..++.+..|++|.+.+|+++.+|..++.+. +-++..+..|||-..-++.+.+|..+++.|++....
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirtetY 235 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTETY 235 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhhhh
Confidence 45556777888999999999998887666543 345678889999988889999999999999876443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=5.9e-19 Score=164.78 Aligned_cols=250 Identities=28% Similarity=0.346 Sum_probs=126.2
Q ss_pred hhcCCCCCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCCC-------CchhhhCCCCCcEEECcCCCCCC-C
Q 014624 111 SIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIE-------LPDSIGDLLSLVYLDLRGNQISA-L 177 (421)
Q Consensus 111 ~~~~~~~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~~-------l~~~~~~l~~L~~L~l~~~~l~~-l 177 (421)
.+..+..|++|+++++.++. ++..+...+.+++++++++.+.. ++..+..+++|+.|++++|.+.. .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34444456666666665532 23344455556666665554442 12234445566666666665542 2
Q ss_pred chhhcCC---CCCCEEECCCCCCCC-----CccccCCC-ccccccccccccCC-----CCcchhcCCcCccEEEcccCCC
Q 014624 178 PVALSRL---VRLEELDLGSNNLSS-----LPDSIGSL-ISLKKLIVETNDLE-----ELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 178 ~~~~~~~---~~L~~L~l~~~~l~~-----~~~~~~~l-~~L~~L~l~~n~~~-----~~~~~~~~~~~L~~L~l~~~~l 243 (421)
+..+..+ ++|++|++++|.+.. +...+..+ ++|++|++++|.++ .+...+..++.|++|++++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 2222222 336666666665541 11223333 55566666655554 1223344555667777766666
Q ss_pred CC-----chhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCCCc-hhhh-----ccCcccEEEc
Q 014624 244 KA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESVP-ESLC-----FATTLVKMNI 307 (421)
Q Consensus 244 ~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~~~-~~~~-----~~~~L~~L~l 307 (421)
+. ++..+..+++|+.|++++|.++. +...+..+++|++|++++|.+++.. ..+. ..+.|+.|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 52 22334444567777777776653 2344556677777777777666321 1111 1245555555
Q ss_pred cCCccC---CCccchhhcCCCCCcEEeCccCCCCcc-----chhhcCC-CCCCEEEccCCCC
Q 014624 308 GNNFAD---LRALPRSIGNLEMLEELDISNNQIRVL-----PDSFRML-SRLRVLRVQENPL 360 (421)
Q Consensus 308 ~~~~~~---~~~~~~~~~~l~~L~~L~L~~n~l~~l-----~~~~~~l-~~L~~L~l~~n~~ 360 (421)
++|... ...+...+..+++|+.+++++|.++.- ...+... +.|+.+++.+|++
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 555321 122333444556666666666666632 2233333 5666666666553
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=3.1e-17 Score=153.17 Aligned_cols=245 Identities=26% Similarity=0.269 Sum_probs=181.9
Q ss_pred EEEccCCcCC--cCchhhcCCCCCcEEEccCCCCC-----CCchhhhCCCCCcEEECcCCCCCC-------CchhhcCCC
Q 014624 120 SLDLSENRIV--AVPATIGGLSSLKKLDLHANRII-----ELPDSIGDLLSLVYLDLRGNQISA-------LPVALSRLV 185 (421)
Q Consensus 120 ~L~l~~~~l~--~~~~~l~~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~l~~~~l~~-------l~~~~~~~~ 185 (421)
.|+|..+.++ .....+..+.+|++|+++++.++ .++..+...+++++++++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666654 23456677788999999999985 345567778889999999987763 234567788
Q ss_pred CCCEEECCCCCCCC-CccccCCC---ccccccccccccCCC-----CcchhcCC-cCccEEEcccCCCC-----Cchhhh
Q 014624 186 RLEELDLGSNNLSS-LPDSIGSL---ISLKKLIVETNDLEE-----LPHTIGQC-SSLRELRVDYNRLK-----ALPEAV 250 (421)
Q Consensus 186 ~L~~L~l~~~~l~~-~~~~~~~l---~~L~~L~l~~n~~~~-----~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~l 250 (421)
+|+.|++++|.+.. .+..+..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.++ .+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999998873 33333333 459999999998873 22345566 89999999999988 334456
Q ss_pred hccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCCC-----chhhhccCcccEEEccCCccCCCccchh
Q 014624 251 GKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESV-----PESLCFATTLVKMNIGNNFADLRALPRS 320 (421)
Q Consensus 251 ~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 320 (421)
..+++|++|++++|.++. ++..+..+++|++|++++|.+++. ...+..+++|+.|++++|......+...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 777899999999999884 334566778999999999998733 3456678899999999995432222211
Q ss_pred hc----CCCCCcEEeCccCCCC-----ccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 321 IG----NLEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 321 ~~----~l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
.. ..+.|++|++++|.++ .+...+..+++|+.+++++|+++...
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 11 2479999999999997 34456777899999999999998653
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.64 E-value=9.9e-18 Score=156.26 Aligned_cols=191 Identities=35% Similarity=0.578 Sum_probs=161.2
Q ss_pred CCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccC
Q 014624 187 LEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNI 266 (421)
Q Consensus 187 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l 266 (421)
-...|++.|++.++|..+..+..|+.+.+..|.+..++..+..+..|..++++.|++..+|..++.+ -|+.|-+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCcc
Confidence 3456777788888877777777788888888888888777888888888888888888888777665 478888888888
Q ss_pred CcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcC
Q 014624 267 KQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRM 346 (421)
Q Consensus 267 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 346 (421)
+.+|..++..++|..||.+.|.+..+|..++.+.+|+.|++..| .+..+|+.+..+ .|.+||+++|+|+.+|..|..
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence 88888888888888888888888888888888888888888888 567778777744 588999999999999999999
Q ss_pred CCCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHH
Q 014624 347 LSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMAD 381 (421)
Q Consensus 347 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 381 (421)
|.+|++|.|.+||+..+|.++...|..++++|+.-
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 99999999999999999999999999999999854
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=142.41 Aligned_cols=267 Identities=24% Similarity=0.332 Sum_probs=187.1
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEECcC-CCCCC
Q 014624 100 KLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRG-NQISA 176 (421)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~-~~l~~ 176 (421)
|...++..+|..+. +....+.+..|.++.+| .+|+.+++||.|+|++|.|+.| |+.|..++.|..|-+.+ |+|+.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 33445555565443 45678999999999985 5899999999999999999977 56788888877776666 88999
Q ss_pred Cch-hhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCC--------
Q 014624 177 LPV-ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKA-------- 245 (421)
Q Consensus 177 l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~-------- 245 (421)
+|. .|..+..++.|.+.-|++..++ +.+..++++..|.+.+|.+..++. .+..+..++.+.+..|.+..
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 886 5788888888888888888664 567888899999999998887766 67777888888877665321
Q ss_pred -----chhhhhccCCCCeeecccccCCcCCc-ccCCC-CCCcEEECcCCCCC-CCc-hhhhccCcccEEEccCCccCCCc
Q 014624 246 -----LPEAVGKIHTLEVLSVRYNNIKQLPT-TMSSL-SSLRELDVSFNELE-SVP-ESLCFATTLVKMNIGNNFADLRA 316 (421)
Q Consensus 246 -----~~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~~-~~L~~L~L~~n~l~-~~~-~~~~~~~~L~~L~l~~~~~~~~~ 316 (421)
.+..++...-.....+....+..++. .+... ..+.+=-.+.+... .-| ..+..+++|++|++++|.+. ..
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i 289 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RI 289 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hh
Confidence 11112222223333344444444321 12111 11111111222222 223 35778999999999999533 33
Q ss_pred cchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHHHh
Q 014624 317 LPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIVE 369 (421)
Q Consensus 317 ~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~ 369 (421)
-+.+|.+...+++|.|..|+|..+.. .|..+..|+.|+|.+|++++..+..|.
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 34688999999999999999998875 789999999999999999988766554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.51 E-value=1.4e-15 Score=142.12 Aligned_cols=196 Identities=35% Similarity=0.495 Sum_probs=174.0
Q ss_pred cCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEEC
Q 014624 113 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDL 192 (421)
Q Consensus 113 ~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 192 (421)
..+..-...+++.|.+..+|..+..+..|..+.++.|.+..+|..+..+..|++|+++.|+++.+|..+..++ |+.|.+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 3555667789999999999988888899999999999999999999999999999999999999998887766 999999
Q ss_pred CCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcc
Q 014624 193 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT 272 (421)
Q Consensus 193 ~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~ 272 (421)
++|+++.+|..++...+|..|+.+.|.+..++..+.++.+|+.|.+..|++..+|..+.. -.|..||+++|++..+|-.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchh
Confidence 999999999999999999999999999999999999999999999999999999988884 4789999999999999999
Q ss_pred cCCCCCCcEEECcCCCCCCCchhhhccC---cccEEEccCC
Q 014624 273 MSSLSSLRELDVSFNELESVPESLCFAT---TLVKMNIGNN 310 (421)
Q Consensus 273 l~~~~~L~~L~L~~n~l~~~~~~~~~~~---~L~~L~l~~~ 310 (421)
|..+.+|++|-|.+|.+..-|..++..- --++|+...|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 9999999999999999998877665432 2356666555
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.47 E-value=1.1e-13 Score=133.12 Aligned_cols=182 Identities=39% Similarity=0.588 Sum_probs=128.6
Q ss_pred hcCCCCCCEEEccCCcCCcCchhhcCCC-CCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEE
Q 014624 112 IGKLSSLVSLDLSENRIVAVPATIGGLS-SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEEL 190 (421)
Q Consensus 112 ~~~~~~L~~L~l~~~~l~~~~~~l~~l~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 190 (421)
+...+.++.|++.++.+++++....... +|+.|++++|.+..+|..+..+++|+.|++++|+++.+|......+.|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3344667777777777777766555553 777777777777777666777777777777777777777665566777777
Q ss_pred ECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC
Q 014624 191 DLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP 270 (421)
Q Consensus 191 ~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~ 270 (421)
++++|++..+|........|+++.+++|.....+..+..+..+..+.+.+|++..++..+..+..++.|++++|.++.++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 77777777777655555567777777775555556666677777777777777766666677777777777777777775
Q ss_pred cccCCCCCCcEEECcCCCCCCCch
Q 014624 271 TTMSSLSSLRELDVSFNELESVPE 294 (421)
Q Consensus 271 ~~l~~~~~L~~L~L~~n~l~~~~~ 294 (421)
. ++...+++.|+++++.+...+.
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c-ccccCccCEEeccCccccccch
Confidence 5 6777777777777777665443
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.47 E-value=2.9e-14 Score=123.51 Aligned_cols=227 Identities=19% Similarity=0.196 Sum_probs=150.8
Q ss_pred hhcCCCCCcEEEccCCC--CC-------CCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCcccc
Q 014624 134 TIGGLSSLKKLDLHANR--II-------ELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSI 204 (421)
Q Consensus 134 ~l~~l~~L~~L~L~~~~--i~-------~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~ 204 (421)
.+.-+..|.+|..++.. +. .+|-.+..+.+|..+.++.|.-..+-.....-|.|..+.+....+...|..+
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc
Confidence 34445677777776542 11 1222334456666666666654444332233356666666554433222111
Q ss_pred CCCccccccccccccC-C-CCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEE
Q 014624 205 GSLISLKKLIVETNDL-E-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLREL 282 (421)
Q Consensus 205 ~~l~~L~~L~l~~n~~-~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L 282 (421)
....+....-..-.. + .....+..+..|+++++++|.++.+.....-.+.++.|++++|.+..+.. +..+++|+.|
T Consensus 257 -pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~L 334 (490)
T KOG1259|consen 257 -PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLL 334 (490)
T ss_pred -chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEe
Confidence 111111111111000 0 11122334567889999999999888888888999999999999988854 8888999999
Q ss_pred ECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch--hhcCCCCCCEEEccCCCC
Q 014624 283 DVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD--SFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 283 ~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~~ 360 (421)
|||+|.++.+..+-..+-+.++|.+++| .++.+ .++.++-+|..||+++|+|..+.+ .++++|-|+.+.+.+||+
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N--~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQN--KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhh--hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999999888778888888999999988 44444 457778889999999999997764 688999999999999999
Q ss_pred CCCcH
Q 014624 361 EVPPR 365 (421)
Q Consensus 361 ~~~~~ 365 (421)
...++
T Consensus 412 ~~~vd 416 (490)
T KOG1259|consen 412 AGSVD 416 (490)
T ss_pred cccch
Confidence 87654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-14 Score=127.64 Aligned_cols=250 Identities=24% Similarity=0.293 Sum_probs=143.9
Q ss_pred ccCCCCCcEEEcCCccccc--ccccchhhcCCCCCCEEEccCCcCC----cCc-------hhhcCCCCCcEEEccCCCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDN--IEWLPDSIGKLSSLVSLDLSENRIV----AVP-------ATIGGLSSLKKLDLHANRII 152 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~l~----~~~-------~~l~~l~~L~~L~L~~~~i~ 152 (421)
...+..++++++++|.+.. ...+...+.+.+.|+..++++--.. .+| .++..+++|++|+||.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456677788888876654 2334556667777777777764221 222 24455666666666666555
Q ss_pred --CC---chhhhCCCCCcEEECcCCCCCCCchh-hcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCC----
Q 014624 153 --EL---PDSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE---- 222 (421)
Q Consensus 153 --~l---~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~---- 222 (421)
.+ ...+.++..|++|.+.+|.+...... ++ ..|..|. .......-+.|+.+....|.+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--------HHhccCCCcceEEEEeeccccccccHH
Confidence 11 12344556666666666655532211 00 0000000 00112233445555555555442
Q ss_pred -CcchhcCCcCccEEEcccCCCCC-----chhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCC
Q 014624 223 -LPHTIGQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 223 -~~~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~ 291 (421)
+...++..+.|+.+.+..|.+.. +...+.++++|+.||+.+|.++. +...+..+++|+.|++++|.+.+
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 22345556677777777776651 22355677777777777777664 34566777777777777777764
Q ss_pred CchhhhccCcccEEEccCCccCCCccchhh-cCCCCCcEEeCccCCCC-----ccchhhcCCCCCCEEEccCCCCCCCcH
Q 014624 292 VPESLCFATTLVKMNIGNNFADLRALPRSI-GNLEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
-. ...+...+ ...|+|+.|.+.+|.|+ .+..++...|.|+.|+|++|.+...+.
T Consensus 256 ~G--------------------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de 315 (382)
T KOG1909|consen 256 EG--------------------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE 315 (382)
T ss_pred cc--------------------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccch
Confidence 31 11222223 34688999999999888 234456678899999999999854443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=3.8e-13 Score=129.32 Aligned_cols=195 Identities=38% Similarity=0.563 Sum_probs=106.3
Q ss_pred EEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCC-CCCEEECCCCCCCCCccccCCCccccccccccccCC
Q 014624 143 KLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLV-RLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLE 221 (421)
Q Consensus 143 ~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~ 221 (421)
.+.+..+.+..-...+..++.++.|++.++.++.++....... +|+.|++++|.+..++..+..++.|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4555555543222333444566666666666666655554443 666666666666665544556666666666666666
Q ss_pred CCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCc
Q 014624 222 ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATT 301 (421)
Q Consensus 222 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 301 (421)
.++......+.|+.|++++|++..+|........|+++.+++|.....+..+..+..+..+.+.+|++..++..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~------ 250 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES------ 250 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch------
Confidence 55544445555666666666666555544444445556665554444444555555555555555555544444
Q ss_pred ccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCC
Q 014624 302 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
++.+++++.|++++|.++.++. +..+.+++.++++++.+...
T Consensus 251 -------------------~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 251 -------------------IGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -------------------hccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 4444555555555555555544 45555555555555554433
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.38 E-value=1.6e-13 Score=141.07 Aligned_cols=227 Identities=26% Similarity=0.290 Sum_probs=144.5
Q ss_pred CCCCCcceeeecCCCCccceeecccch----------hHHHhhhhHHHHHHhcc---cccccCccceeeecccCCCC---
Q 014624 8 PLFPPRLRYTIPLSNPVPFLVSFIPLF----------SSFCLLLTDFLILQLGS---IIFRNKVPIMIMCMCCVGQD--- 71 (421)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~L~~L~l~~---~~~~~~~~~~~~~~~~~~~~--- 71 (421)
-+||+|+.+....+..+|+..+.+-.. ..+.+.+.+=-.+--.. +.....+++++..++.-..+
T Consensus 420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccc
Confidence 389999999999999999999966431 12233333222222222 23344455555554443222
Q ss_pred --CccchHH---hhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCc--CCcCc-hhhcCCCCCcE
Q 014624 72 --GEKLSLI---KLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR--IVAVP-ATIGGLSSLKK 143 (421)
Q Consensus 72 --~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--l~~~~-~~l~~l~~L~~ 143 (421)
.+..... ...+.+........|+..+-++....+. .. ..++.|++|-+.++. +..++ ..|..++.|+.
T Consensus 500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~---~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrV 575 (889)
T KOG4658|consen 500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA---GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRV 575 (889)
T ss_pred ccccceEEECCcCccccccccchhheeEEEEeccchhhcc---CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEE
Confidence 2211111 1112333444556788888776655443 22 255678898888886 55553 45788999999
Q ss_pred EEccCC-CCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCC-CCccccCCCccccccccccccCC
Q 014624 144 LDLHAN-RIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE 221 (421)
Q Consensus 144 L~L~~~-~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~ 221 (421)
|||++| .+..+|..++.+-+|++|+++++.+..+|..+.++..|.+|++..+... .++.....+.+|+.|.+......
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc
Confidence 999976 5568899999999999999999999999999999999999999877543 44555566888888877654422
Q ss_pred ---CCcchhcCCcCccEEEc
Q 014624 222 ---ELPHTIGQCSSLRELRV 238 (421)
Q Consensus 222 ---~~~~~~~~~~~L~~L~l 238 (421)
.....+..+.+|+.+..
T Consensus 656 ~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cchhhHHhhhcccchhhhee
Confidence 11233444455555544
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=9.6e-14 Score=120.37 Aligned_cols=267 Identities=19% Similarity=0.235 Sum_probs=167.4
Q ss_pred chhhcCCCCCCEEEccCCc--CC-------cCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCch
Q 014624 109 PDSIGKLSSLVSLDLSENR--IV-------AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV 179 (421)
Q Consensus 109 ~~~~~~~~~L~~L~l~~~~--l~-------~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~ 179 (421)
...+.-+..|..|.+++.. +. .+|..+.-+.+|+.+.++.+.-..+-.....-|.|+++.+.+..++..|.
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~ 254 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS 254 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc
Confidence 3445556777777777652 11 12444555678888888887655443333345788888888776664432
Q ss_pred hhcCCCCCCEEECCCCCCC----CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCC
Q 014624 180 ALSRLVRLEELDLGSNNLS----SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHT 255 (421)
Q Consensus 180 ~~~~~~~L~~L~l~~~~l~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~ 255 (421)
.+. ... ..|.++..-+ ..-..+.-+..|+++++++|.++.+...+.-.|.++.|++++|++..+.. +..+.+
T Consensus 255 l~p-e~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~ 330 (490)
T KOG1259|consen 255 LLP-ETI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQ 330 (490)
T ss_pred ccc-hhh--hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhccc
Confidence 211 111 1122221111 11122334566778888888887777777777888888888888877644 677778
Q ss_pred CCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccC
Q 014624 256 LEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN 335 (421)
Q Consensus 256 L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n 335 (421)
|+.||+++|.++++..+-..+-++++|.|++|.+.++ .++..+-+|..|++.+|.+.--.-...++++|-|+.+.|.+|
T Consensus 331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 8888888888877766666777788888888887765 567777888888888774332222346789999999999999
Q ss_pred CCCccchh----hcCC-CCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHHHhhh
Q 014624 336 QIRVLPDS----FRML-SRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMADLVEK 385 (421)
Q Consensus 336 ~l~~l~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
.+..+++. +..+ .+-..+.+.+. +.....+.+..+...++...+.
T Consensus 410 Pl~~~vdYRTKVLa~FGERaSE~~LD~~-----~~~~~ELDTV~Vl~Al~KAKE~ 459 (490)
T KOG1259|consen 410 PLAGSVDYRTKVLARFGERASEISLDNE-----PGNQQELDTVLVLSALLKAKER 459 (490)
T ss_pred CccccchHHHHHHHHHhhhhhheecCCC-----CcchhhhhHHHHHHHHHHHHHH
Confidence 99977752 1111 12234444443 3444556666776666554433
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.7e-13 Score=123.25 Aligned_cols=204 Identities=24% Similarity=0.268 Sum_probs=132.3
Q ss_pred hcCCCCCcEEEccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCC---chhhcCCCCCCEEECCCCCCCCCccc--cCCC
Q 014624 135 IGGLSSLKKLDLHANRIIELP--DSIGDLLSLVYLDLRGNQISAL---PVALSRLVRLEELDLGSNNLSSLPDS--IGSL 207 (421)
Q Consensus 135 l~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~l 207 (421)
=.++.+|+.+.|.++.+...+ .....|++++.||++.|-+..+ ......+|+|+.|+++.|++....+. -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356788888899888877554 3566789999999999876643 34567788999999999887744221 2356
Q ss_pred ccccccccccccCC--CCcchhcCCcCccEEEcccCC-CCCchhhhhccCCCCeeecccccCCcCC--cccCCCCCCcEE
Q 014624 208 ISLKKLIVETNDLE--ELPHTIGQCSSLRELRVDYNR-LKALPEAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLREL 282 (421)
Q Consensus 208 ~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~~~-l~~~~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L 282 (421)
++|+.|.++.|.++ .+...+..+|+|+.|++..|. +........-+..|+.|+|++|.+-+++ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 67888888888777 334455667888888888874 3222223344567888888888887766 456778888888
Q ss_pred ECcCCCCCCCc--hh-----hhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC
Q 014624 283 DVSFNELESVP--ES-----LCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR 338 (421)
Q Consensus 283 ~L~~n~l~~~~--~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 338 (421)
+++.+++.++. +. ....++|++|++..|...--..-..+..+++|+.|.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888877542 22 2345566666666652211111112233455555555555444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-13 Score=122.19 Aligned_cols=197 Identities=24% Similarity=0.266 Sum_probs=92.8
Q ss_pred CCCCCCEEEccCCcCCcCc--hhhcCCCCCcEEEccCCCCCCC---chhhhCCCCCcEEECcCCCCCCCch--hhcCCCC
Q 014624 114 KLSSLVSLDLSENRIVAVP--ATIGGLSSLKKLDLHANRIIEL---PDSIGDLLSLVYLDLRGNQISALPV--ALSRLVR 186 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~--~~l~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~~ 186 (421)
++.+|+.+.+.++.+...+ .....|++++.|+|++|-+..+ ......+++|+.|+++.|.+..... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4444555555555444332 2344455555555555543321 1233345555555555554442111 1123445
Q ss_pred CCEEECCCCCCC--CCccccCCCcccccccccccc-CCCCcchhcCCcCccEEEcccCCCCCch--hhhhccCCCCeeec
Q 014624 187 LEELDLGSNNLS--SLPDSIGSLISLKKLIVETND-LEELPHTIGQCSSLRELRVDYNRLKALP--EAVGKIHTLEVLSV 261 (421)
Q Consensus 187 L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~l~~~~~L~~L~l 261 (421)
|+.|.++.|+++ ++...+..+|+|+.|++..|. +.........+..|+.|+|++|++-+++ .....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 555555555554 222333445555555555552 1111112222345556666665555444 23455555666666
Q ss_pred ccccCCcC--Ccc-----cCCCCCCcEEECcCCCCCCCc--hhhhccCcccEEEccCC
Q 014624 262 RYNNIKQL--PTT-----MSSLSSLRELDVSFNELESVP--ESLCFATTLVKMNIGNN 310 (421)
Q Consensus 262 ~~n~l~~l--~~~-----l~~~~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~l~~~ 310 (421)
+.|.++++ |+. ...+++|++|+++.|++.+++ ..+..+++|+.|.+..+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 66655552 222 244566666666666664332 34445555555555444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=2.2e-12 Score=107.04 Aligned_cols=125 Identities=26% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCcCccEEEcccCCCCCchhhhh-ccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhh-hccCcccEEE
Q 014624 229 QCSSLRELRVDYNRLKALPEAVG-KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL-CFATTLVKMN 306 (421)
Q Consensus 229 ~~~~L~~L~l~~~~l~~~~~~l~-~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~ 306 (421)
++..+++|++.+|+++.+. .+. .+.+|+.|++++|.++.++ .+..++.|++|++++|+|+++...+ ..+++|+.|.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445556666666665553 232 3455666666666666553 3555666666666666666554333 2344444444
Q ss_pred ccCCccCCCccchhhcCCCCCcEEeCccCCCCccch----hhcCCCCCCEEEc
Q 014624 307 IGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD----SFRMLSRLRVLRV 355 (421)
Q Consensus 307 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l 355 (421)
+++|.+.--.--..++.+++|+.|+|.+|.++.-+. .+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 444422111111334556666666666666664432 3455666665543
No 34
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.29 E-value=4e-14 Score=135.87 Aligned_cols=181 Identities=28% Similarity=0.380 Sum_probs=140.7
Q ss_pred cCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCC
Q 014624 231 SSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNN 310 (421)
Q Consensus 231 ~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~ 310 (421)
..|...+.++|.++.+...+.-++.++.|+|++|+++++. .+..+++|++|||+.|.+..+|..-....+|..|++.+|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 4577788888999988888888899999999999999885 788899999999999999988765444555999999999
Q ss_pred ccCCCccchhhcCCCCCcEEeCccCCCCccch--hhcCCCCCCEEEccCCCCCCCcHHHHhcCHHHHHHHHHH--Hhhhc
Q 014624 311 FADLRALPRSIGNLEMLEELDISNNQIRVLPD--SFRMLSRLRVLRVQENPLEVPPRNIVEMGAQAVVQYMAD--LVEKR 386 (421)
Q Consensus 311 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 386 (421)
.+..+ ..+.++.+|+.||+++|-|....+ .++.+..|+.|.|.|||+.|-+.. ++++.+|+.. ...+.
T Consensus 243 --~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h-----RaataqYl~~~~a~~~f 314 (1096)
T KOG1859|consen 243 --ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH-----RAATAQYLHKNSAPVKF 314 (1096)
T ss_pred --HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH-----HHHHHhHhccccCCcce
Confidence 44444 357789999999999998875543 567888999999999999998754 6788888762 22233
Q ss_pred ccCCcccccccceeeeecccccccCCCCCccccc
Q 014624 387 DAKTQPVKQKKSWVEMCFFSRSNKRKRNGMDYVK 420 (421)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (421)
...++.+.....|...-...++...++.+..|-.
T Consensus 315 ~LDgk~l~~~efwk~~s~~~hr~~~p~s~~~~S~ 348 (1096)
T KOG1859|consen 315 KLDGKALGGREFWKRQSGVSHRSSRPASYGFYSP 348 (1096)
T ss_pred EecceeccchhhhhhhhheecCCCCCCCCCCCCc
Confidence 3334456667788777777777777777766653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=7.7e-12 Score=103.83 Aligned_cols=130 Identities=35% Similarity=0.415 Sum_probs=39.8
Q ss_pred hhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhh-h
Q 014624 81 ASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSI-G 159 (421)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~-~ 159 (421)
...........+++|++.++.+..++.+.. .+.+|++|++++|.+..+. .+..++.|+.|++++|.++.+.+.+ .
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp --------------------------S--T---T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccccccccchhh---hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 334444455567778888777776653321 4567777777777777763 3666777777777777777775444 3
Q ss_pred CCCCCcEEECcCCCCCCCc--hhhcCCCCCCEEECCCCCCCCCc----cccCCCccccccc
Q 014624 160 DLLSLVYLDLRGNQISALP--VALSRLVRLEELDLGSNNLSSLP----DSIGSLISLKKLI 214 (421)
Q Consensus 160 ~l~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~----~~~~~l~~L~~L~ 214 (421)
.+++|++|++++|++..+. ..+..+++|+.|++.+|.+...+ ..+..+|+|+.|+
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 5777777777777766543 24556677777777777655332 1233444555544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=4.8e-12 Score=112.15 Aligned_cols=229 Identities=24% Similarity=0.295 Sum_probs=120.4
Q ss_pred hhhcCCCCCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCC----CCch-------hhhCCCCCcEEECcCCC
Q 014624 110 DSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRII----ELPD-------SIGDLLSLVYLDLRGNQ 173 (421)
Q Consensus 110 ~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~----~l~~-------~~~~l~~L~~L~l~~~~ 173 (421)
+....+..++.+++++|.+.. +...+.+.++|+..++++-.-. .+|+ .+..+++|++|+||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344455667777777776642 2335555666666666543211 2222 22234455555555554
Q ss_pred CCC--C---chhhcCCCCCCEEECCCCCCCCCccc-cCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch
Q 014624 174 ISA--L---PVALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 174 l~~--l---~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
+.. + -..+.++..|++|.+.+|.+...... ++ ..|.+|. ...-....+.|+.+...+|++.+.+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--------HHhccCCCcceEEEEeecccccccc
Confidence 431 1 11233344444444444444322110 00 0111111 0112233456777777777665433
Q ss_pred -----hhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCcc
Q 014624 248 -----EAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRAL 317 (421)
Q Consensus 248 -----~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 317 (421)
..+...+.|+.+.++.|.+.. +...+..+++|+.|||.+|-++.- +...+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--------------------gs~~L 233 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--------------------GSVAL 233 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--------------------HHHHH
Confidence 234445566666666665543 223455566666666666555432 11234
Q ss_pred chhhcCCCCCcEEeCccCCCCc-----cchhh-cCCCCCCEEEccCCCCCCCcHHHH
Q 014624 318 PRSIGNLEMLEELDISNNQIRV-----LPDSF-RMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 318 ~~~~~~l~~L~~L~L~~n~l~~-----l~~~~-~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
...++.+++|+.|++++|.+.. +...+ ...|+|+++.+.+|.++.....+.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 5567788999999999999883 22222 457999999999999876554433
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.14 E-value=6.8e-12 Score=120.94 Aligned_cols=241 Identities=29% Similarity=0.392 Sum_probs=108.9
Q ss_pred CCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCC
Q 014624 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNN 196 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 196 (421)
.++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 33333444444433222234444444444444444444222344444445555444444441 23333344445555554
Q ss_pred CCCCccccCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCC
Q 014624 197 LSSLPDSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 275 (421)
Q Consensus 197 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~ 275 (421)
+..+.. +..++.|+.+++++|.+..+... ...+..++.+.+.+|.+..+. .+..+..+..+++..|.++.+. .+..
T Consensus 152 i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~l~~ 228 (414)
T KOG0531|consen 152 ISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-GLNE 228 (414)
T ss_pred chhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-Cccc
Confidence 444421 33344444555555544443221 244444555555555444331 1222223333344444444431 1112
Q ss_pred CC--CCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCc---cc-h-hhcCCC
Q 014624 276 LS--SLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV---LP-D-SFRMLS 348 (421)
Q Consensus 276 ~~--~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---l~-~-~~~~l~ 348 (421)
+. +|+.+++++|++..++..+.....+..|++.++...-. ..+...+.+..+....+.+.. .. . .....+
T Consensus 229 ~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred chhHHHHHHhcccCccccccccccccccccccchhhcccccc---ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 22 25555555555554444444555555555555421111 113344555556666665551 11 1 145667
Q ss_pred CCCEEEccCCCCCCCc
Q 014624 349 RLRVLRVQENPLEVPP 364 (421)
Q Consensus 349 ~L~~L~l~~n~~~~~~ 364 (421)
.++.+.+.++++....
T Consensus 306 ~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccccccCcccccc
Confidence 8888888888876543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=4.2e-11 Score=123.44 Aligned_cols=250 Identities=25% Similarity=0.299 Sum_probs=156.4
Q ss_pred hccCCCCCcEEEcCCcc--cccccccchhhcCCCCCCEEEccCC-cCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCC
Q 014624 85 EVSSKKGTRDLNLQNKL--MDNIEWLPDSIGKLSSLVSLDLSEN-RIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDL 161 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l 161 (421)
.....+.|++|-+..+. ...+. .+.|..++.|.+||+++| .+..+|..++.+-+||||+++++.++.+|..+.++
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 33455679999999875 33433 356889999999999987 46789999999999999999999999999999999
Q ss_pred CCCcEEECcCCCC-CCCchhhcCCCCCCEEECCCCCCCCCc---cccCCCccccccccccccCCCCcchhcCCcCcc---
Q 014624 162 LSLVYLDLRGNQI-SALPVALSRLVRLEELDLGSNNLSSLP---DSIGSLISLKKLIVETNDLEELPHTIGQCSSLR--- 234 (421)
Q Consensus 162 ~~L~~L~l~~~~l-~~l~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~--- 234 (421)
..|.+|++..+.- ..+|.....+++|++|.+.......-. ..+..+.+|+.+....... .+...+.....|.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLL 696 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHh
Confidence 9999999998854 345566677999999999876533111 2233444455544433222 1111122222222
Q ss_pred -EEEcccCCCCCchhhhhccCCCCeeecccccCCcCC-ccc-----C-CCCCCcEEECcCCCCCCCchhhhccCcccEEE
Q 014624 235 -ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTM-----S-SLSSLRELDVSFNELESVPESLCFATTLVKMN 306 (421)
Q Consensus 235 -~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l-----~-~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 306 (421)
.+.+.++.....+..+..+.+|+.|.+.++.+.+.. ... . .++++..+.+.++..-..+.+....++|+.|.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 333333444455566677788888888888776421 111 1 13344444444444444455566778888888
Q ss_pred ccCCccCCCccchhhcCCCCCcEEeCccCCCC
Q 014624 307 IGNNFADLRALPRSIGNLEMLEELDISNNQIR 338 (421)
Q Consensus 307 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 338 (421)
+..+... +.+.+....+..++.+-+..+.+.
T Consensus 777 l~~~~~~-e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 777 LVSCRLL-EDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred Eeccccc-ccCCCHHHHhhhcccEEecccccc
Confidence 8777533 222233334444443333333333
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.99 E-value=3.4e-11 Score=116.07 Aligned_cols=218 Identities=29% Similarity=0.422 Sum_probs=157.9
Q ss_pred cCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCcccccccc
Q 014624 136 GGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 215 (421)
Q Consensus 136 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l 215 (421)
..+..++.+.+..|.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+. .+..++.|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 456677777788888887545577889999999999999988655788999999999999999874 4667777999999
Q ss_pred ccccCCCCcchhcCCcCccEEEcccCCCCCchhh-hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCch
Q 014624 216 ETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPE 294 (421)
Q Consensus 216 ~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 294 (421)
.+|.+..+ ..+..+..|+.+++++|++..+... +..+.+++.+.+.+|.+..+ ..+..+..+..+++..|.++.+..
T Consensus 148 ~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 148 SGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred ccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC
Confidence 99999877 4566688999999999999887553 57788999999999988776 334444555556888888775522
Q ss_pred hhhccC--cccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCC
Q 014624 295 SLCFAT--TLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 295 ~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~ 360 (421)
+.... .|+.+++.++ .+...+..+..+..+..|++.++++..+.. +...+.+..+....+++
T Consensus 226 -l~~~~~~~L~~l~l~~n--~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGN--RISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL 289 (414)
T ss_pred -cccchhHHHHHHhcccC--ccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence 22222 3777888877 344444556677788888888887775433 23333444444444443
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.8e-09 Score=94.03 Aligned_cols=201 Identities=22% Similarity=0.217 Sum_probs=127.7
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCc---CchhhcCCCCCcEEEccCCCCCCCchhh-hCCCCCcE
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA---VPATIGGLSSLKKLDLHANRIIELPDSI-GDLLSLVY 166 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~---~~~~l~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~ 166 (421)
.+.-|.+.++.+.....+-..-..+++++.+|+.+|.+++ +...+.++|.|+.|+++.|.+...-..+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445666666666654432233366778888888887764 3456678888888888888776322222 24567788
Q ss_pred EECcCCCCC--CCchhhcCCCCCCEEECCCCCCCCCc---cccCC-CccccccccccccCC---CCcchhcCCcCccEEE
Q 014624 167 LDLRGNQIS--ALPVALSRLVRLEELDLGSNNLSSLP---DSIGS-LISLKKLIVETNDLE---ELPHTIGQCSSLRELR 237 (421)
Q Consensus 167 L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~-l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~L~ 237 (421)
|-+.++.+. .....+..+|.++.|.++.|.++.+. ..... -+.++++....|... +.......++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 888777655 34445667777888888877555321 11111 224555555555433 1112223467788888
Q ss_pred cccCCCCCch--hhhhccCCCCeeecccccCCcCC--cccCCCCCCcEEECcCCCCCC
Q 014624 238 VDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 238 l~~~~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~L~~n~l~~ 291 (421)
+..|.+.+.. .....++.+..|+++.+++.+.. +.+.+++.|..|.++++.+.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888776443 34566677778888888888754 578888999999999988764
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=7.2e-10 Score=100.75 Aligned_cols=269 Identities=17% Similarity=0.118 Sum_probs=155.0
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCc-CCc--CchhhcCCCCCcEEEccCC-CCCCC--chhhhCCCCC
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVA--VPATIGGLSSLKKLDLHAN-RIIEL--PDSIGDLLSL 164 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~--~~~~l~~l~~L~~L~L~~~-~i~~l--~~~~~~l~~L 164 (421)
-||.|.+.|+.-.....+......++++++|.+.+|. +++ ....-..|++|++|++..| .++.. ......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4788888887766666666666788888888888875 222 1223356788888888774 44422 1123457888
Q ss_pred cEEECcCC-CCC--CCchhhcCCCCCCEEECCCCCCC---CCccccCCCccccccccccc-cCCCC--cchhcCCcCccE
Q 014624 165 VYLDLRGN-QIS--ALPVALSRLVRLEELDLGSNNLS---SLPDSIGSLISLKKLIVETN-DLEEL--PHTIGQCSSLRE 235 (421)
Q Consensus 165 ~~L~l~~~-~l~--~l~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n-~~~~~--~~~~~~~~~L~~ 235 (421)
++++++.| .++ .+.....++..++.+...+|.=. .+-..-..+..+.++++..+ .++.. -..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88888777 233 23234445555666655554211 11111123333444444343 22221 112234566777
Q ss_pred EEcccCCC-CCch--hhhhccCCCCeeeccccc-CCc--CCcccCCCCCCcEEECcCCCCCC---CchhhhccCcccEEE
Q 014624 236 LRVDYNRL-KALP--EAVGKIHTLEVLSVRYNN-IKQ--LPTTMSSLSSLRELDVSFNELES---VPESLCFATTLVKMN 306 (421)
Q Consensus 236 L~l~~~~l-~~~~--~~l~~~~~L~~L~l~~n~-l~~--l~~~l~~~~~L~~L~L~~n~l~~---~~~~~~~~~~L~~L~ 306 (421)
++.+++.. +..+ ..-.++.+|+.+-+++|+ ++. +...-.+++.|+.+++..+.... +.....+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 77766533 3222 233566778888888774 333 22233566778888887776442 233445677888888
Q ss_pred ccCCccCCCc----cchhhcCCCCCcEEeCccCCCC--ccchhhcCCCCCCEEEccCCC
Q 014624 307 IGNNFADLRA----LPRSIGNLEMLEELDISNNQIR--VLPDSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 307 l~~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~l~~n~ 359 (421)
+++|...++. +...-.....|+.+.|++|..+ ..-+.+..+++|+.+++.+|.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 8877433333 2233345677888888888554 334567777888887777764
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=1.9e-10 Score=111.05 Aligned_cols=182 Identities=26% Similarity=0.254 Sum_probs=111.6
Q ss_pred chhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchh-------hh---CCCCCcEEECcCCCCCCCc
Q 014624 109 PDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS-------IG---DLLSLVYLDLRGNQISALP 178 (421)
Q Consensus 109 ~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~-------~~---~l~~L~~L~l~~~~l~~l~ 178 (421)
|-.+..++.|++|.+.+|.+....+...-..+|++|...+ .+..+... +. ....|.+.+.+.|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 4455577788888888887765322111123344443322 11111111 11 1135666677777777776
Q ss_pred hhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCe
Q 014624 179 VALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEV 258 (421)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~ 258 (421)
..+.-++.++.||++.|++..+. .+..++.|++|+++.|.+..+|..-..-..|+.|.+++|.++++ ..+.++++|+.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhc
Confidence 67777777888888888777664 56777778888888877776654322222477777877777766 35567777788
Q ss_pred eecccccCCcCC--cccCCCCCCcEEECcCCCCCCCc
Q 014624 259 LSVRYNNIKQLP--TTMSSLSSLRELDVSFNELESVP 293 (421)
Q Consensus 259 L~l~~n~l~~l~--~~l~~~~~L~~L~L~~n~l~~~~ 293 (421)
||++.|-+.+.. ..+..+..|+.|+|.||.+---|
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888877666532 23455667777788887765433
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=1.2e-08 Score=87.84 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=103.7
Q ss_pred cCCCCCcEEEcCCccccc--ccccchhhcCCCCCCEEEccCCcCC----c-------CchhhcCCCCCcEEEccCCCCC-
Q 014624 87 SSKKGTRDLNLQNKLMDN--IEWLPDSIGKLSSLVSLDLSENRIV----A-------VPATIGGLSSLKKLDLHANRII- 152 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~l~----~-------~~~~l~~l~~L~~L~L~~~~i~- 152 (421)
..+..++++++++|.++. ..++...+.+-++|+..++++--.. . +..++-+||+|+..+|+.|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346678888888887765 3455667777778888888765322 1 1235567777888888777665
Q ss_pred CCc----hhhhCCCCCcEEECcCCCCCCCch--------------hhcCCCCCCEEECCCCCCCCCccccCCCccccccc
Q 014624 153 ELP----DSIGDLLSLVYLDLRGNQISALPV--------------ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLI 214 (421)
Q Consensus 153 ~l~----~~~~~l~~L~~L~l~~~~l~~l~~--------------~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 214 (421)
..| +.+++...|.+|.+++|.+..+.. ....-|.|+.+.+.+|++...+...+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~--------- 177 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS--------- 177 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH---------
Confidence 222 345566777777777776654321 11223455555555555443321100
Q ss_pred cccccCCCCcchhcCCcCccEEEcccCCCCC--c----hhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEE
Q 014624 215 VETNDLEELPHTIGQCSSLRELRVDYNRLKA--L----PEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELD 283 (421)
Q Consensus 215 l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~--~----~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~ 283 (421)
...+..-..|+.+.+..|.+.. + --.+..+++|+.||+++|.++- +...+...+.|++|.
T Consensus 178 ---------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 178 ---------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ---------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 0111112345555555555441 1 1233455666666666666553 234455556666777
Q ss_pred CcCCCCC
Q 014624 284 VSFNELE 290 (421)
Q Consensus 284 L~~n~l~ 290 (421)
+.+|-++
T Consensus 249 lnDClls 255 (388)
T COG5238 249 LNDCLLS 255 (388)
T ss_pred ccchhhc
Confidence 6666655
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1e-09 Score=95.56 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=104.3
Q ss_pred CCCEEECCCCCCC--CCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcccC-CCCCch--hhhhccCCCCee
Q 014624 186 RLEELDLGSNNLS--SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYN-RLKALP--EAVGKIHTLEVL 259 (421)
Q Consensus 186 ~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~-~l~~~~--~~l~~~~~L~~L 259 (421)
.|+++|++...++ .+-..++.|..|+.|.+.++.+. .+...+.+..+|+.++++.+ +++... -.+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5777777776655 33344566667777777776665 23445566667777777764 355332 345667777777
Q ss_pred ecccccCCc--CCccc-CCCCCCcEEECcCCC----CCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeC
Q 014624 260 SVRYNNIKQ--LPTTM-SSLSSLRELDVSFNE----LESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDI 332 (421)
Q Consensus 260 ~l~~n~l~~--l~~~l-~~~~~L~~L~L~~n~----l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L 332 (421)
++++|.+.. +...+ .--++|+.|+++|+. .+.+......+++|..|+|+++.......-..+-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776543 11111 122567777777763 22344445667777777777775444444455667777888888
Q ss_pred ccCCCCccch---hhcCCCCCCEEEccCC
Q 014624 333 SNNQIRVLPD---SFRMLSRLRVLRVQEN 358 (421)
Q Consensus 333 ~~n~l~~l~~---~~~~l~~L~~L~l~~n 358 (421)
+.|..- +|. .+...|+|.+|++.||
T Consensus 346 sRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 877332 222 3567778888888776
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-09 Score=94.05 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=33.6
Q ss_pred ccccccccccCC--CCcchhcCCcCccEEEcccCCCC-CchhhhhccCCCCeeecccc-cCCcC--CcccCCCCCCcEEE
Q 014624 210 LKKLIVETNDLE--ELPHTIGQCSSLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYN-NIKQL--PTTMSSLSSLRELD 283 (421)
Q Consensus 210 L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~n-~l~~l--~~~l~~~~~L~~L~ 283 (421)
++.++++...++ .+...+..|..|+.|.+.++++. .+...+....+|+.|+++.+ .+++. .-.+.+|+.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444433 22223344444444444444444 22233444444444444443 23321 12334444444455
Q ss_pred CcCCCC
Q 014624 284 VSFNEL 289 (421)
Q Consensus 284 L~~n~l 289 (421)
+++|.+
T Consensus 267 lsWc~l 272 (419)
T KOG2120|consen 267 LSWCFL 272 (419)
T ss_pred chHhhc
Confidence 544443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=5.4e-08 Score=66.37 Aligned_cols=57 Identities=39% Similarity=0.687 Sum_probs=26.1
Q ss_pred CCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCC
Q 014624 117 SLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ 173 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~ 173 (421)
+|++|++++|.+..++ ..|.++++|++|++++|.+..+++ .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444443 244444444444444444444432 34444455555544443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.6e-08 Score=88.24 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=144.1
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhh-cCCCCCcEEEccCCCCC--CCchhhhCCCCC
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATI-GGLSSLKKLDLHANRII--ELPDSIGDLLSL 164 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l-~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L 164 (421)
..+.++++++.+|.+.+++.+...+.++|.|++|+++.|.+......+ ....+|+.|.|.++.+. .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345789999999999999999889999999999999999987543444 36789999999999877 444567788999
Q ss_pred cEEECcCCCCCCC--ch-hh-cCCCCCCEEECCCCCCC---CCccccCCCccccccccccccCCCC--cchhcCCcCccE
Q 014624 165 VYLDLRGNQISAL--PV-AL-SRLVRLEELDLGSNNLS---SLPDSIGSLISLKKLIVETNDLEEL--PHTIGQCSSLRE 235 (421)
Q Consensus 165 ~~L~l~~~~l~~l--~~-~~-~~~~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~ 235 (421)
+.|.++.|++..+ .. .. ...+.++++...+|... .........+++..+.+..+++... .+.....+.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999999865522 11 11 12346777777776433 2222234456778888888876633 234556677778
Q ss_pred EEcccCCCCCch--hhhhccCCCCeeecccccCCc-CC------cccCCCCCCcEEECcCCCCC
Q 014624 236 LRVDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQ-LP------TTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 236 L~l~~~~l~~~~--~~l~~~~~L~~L~l~~n~l~~-l~------~~l~~~~~L~~L~L~~n~l~ 290 (421)
|+++.+++.+.. +.+..++.|..|.++++.+.. +. -.++.+++++.|+=+ +++
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 899999888664 567888999999999987764 21 235677777777533 554
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=2.9e-09 Score=96.92 Aligned_cols=271 Identities=18% Similarity=0.081 Sum_probs=183.2
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCc-CCcC--chhhcCCCCCcEEEccCCC-CC--CCchhhh
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVAV--PATIGGLSSLKKLDLHANR-II--ELPDSIG 159 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~--~~~l~~l~~L~~L~L~~~~-i~--~l~~~~~ 159 (421)
....+++++|.+.+|...+...+-..-..+++|++|++..|. ++.. ......+++|++|+++++. ++ .+.....
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 346789999999998755544444555689999999999974 4432 2345689999999999984 33 3434455
Q ss_pred CCCCCcEEECcCCCCCC---CchhhcCCCCCCEEECCCCC-CCCC--ccccCCCccccccccccccC-CCC--cchhcCC
Q 014624 160 DLLSLVYLDLRGNQISA---LPVALSRLVRLEELDLGSNN-LSSL--PDSIGSLISLKKLIVETNDL-EEL--PHTIGQC 230 (421)
Q Consensus 160 ~l~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~-l~~~--~~~~~~l~~L~~L~l~~n~~-~~~--~~~~~~~ 230 (421)
.+..++.+..++|.-.. +-..-..++.+..+++..|. ++.. ...-..+..|+.+..+++.. +.. .....++
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 66778888777763222 21222444556666655552 2221 12234567788888777543 221 1233567
Q ss_pred cCccEEEcccCC-CCCc--hhhhhccCCCCeeecccccCCc---CCcccCCCCCCcEEECcCCCCC-CC-----chhhhc
Q 014624 231 SSLRELRVDYNR-LKAL--PEAVGKIHTLEVLSVRYNNIKQ---LPTTMSSLSSLRELDVSFNELE-SV-----PESLCF 298 (421)
Q Consensus 231 ~~L~~L~l~~~~-l~~~--~~~l~~~~~L~~L~l~~n~l~~---l~~~l~~~~~L~~L~L~~n~l~-~~-----~~~~~~ 298 (421)
++|+.+-++.|+ ++.. ...-.+++.|+.+++.++.... +...-.+++.|+.+.++++... +. ......
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 899999999886 3322 1223577899999999885443 4445578899999999988643 32 334466
Q ss_pred cCcccEEEccCCccCCCccchhhcCCCCCcEEeCccC-CCCc--cchhhcCCCCCCEEEcc
Q 014624 299 ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRV--LPDSFRMLSRLRVLRVQ 356 (421)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--l~~~~~~l~~L~~L~l~ 356 (421)
...|..+.+++++...+..-+.+..+++|+++++-+| +++. +...-..+|++++.-+.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 7889999999998888888888899999999999999 6663 33445677877765443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=5.3e-08 Score=66.43 Aligned_cols=60 Identities=35% Similarity=0.615 Sum_probs=40.3
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRI 151 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i 151 (421)
++|++|++++|.+..+. +..|..+++|++|++++|.+..++ .+|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777776666554 456667777777777777777663 4667777777777777653
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=3.6e-07 Score=92.49 Aligned_cols=106 Identities=21% Similarity=0.368 Sum_probs=79.0
Q ss_pred CCeeecccccCCc-CCcccCCCCCCcEEECcCCCCC-CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCc
Q 014624 256 LEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS 333 (421)
Q Consensus 256 L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 333 (421)
++.|+|++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|... ..+|..++.+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECc
Confidence 6677888887775 6777778888888888888876 66777788888888888888432 4677778888888888888
Q ss_pred cCCCC-ccchhhcCC-CCCCEEEccCCCCCC
Q 014624 334 NNQIR-VLPDSFRML-SRLRVLRVQENPLEV 362 (421)
Q Consensus 334 ~n~l~-~l~~~~~~l-~~L~~L~l~~n~~~~ 362 (421)
+|.++ .+|..+... .++..+++.+|+..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 88877 677766543 456677787776543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=7.6e-07 Score=90.15 Aligned_cols=103 Identities=29% Similarity=0.482 Sum_probs=82.0
Q ss_pred CCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCCCCCcEEECcCCCCC-CCchhhcCCCCCCEEECC
Q 014624 117 SLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVYLDLRGNQIS-ALPVALSRLVRLEELDLG 193 (421)
Q Consensus 117 ~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~ 193 (421)
.++.|++++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 45778888999999999999887 67878888999999999999888 678888888999999999
Q ss_pred CCCCC-CCccccCCC-cccccccccccc
Q 014624 194 SNNLS-SLPDSIGSL-ISLKKLIVETND 219 (421)
Q Consensus 194 ~~~l~-~~~~~~~~l-~~L~~L~l~~n~ 219 (421)
+|.+. .+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 98887 667655442 345566666664
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=2.5e-08 Score=77.15 Aligned_cols=108 Identities=29% Similarity=0.367 Sum_probs=51.8
Q ss_pred ccEEEcccCCCCCchhhh---hccCCCCeeecccccCCcCCcccC-CCCCCcEEECcCCCCCCCchhhhccCcccEEEcc
Q 014624 233 LRELRVDYNRLKALPEAV---GKIHTLEVLSVRYNNIKQLPTTMS-SLSSLRELDVSFNELESVPESLCFATTLVKMNIG 308 (421)
Q Consensus 233 L~~L~l~~~~l~~~~~~l---~~~~~L~~L~l~~n~l~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 308 (421)
+..++++.|++-.++... .....|...++++|.+.++|..|. .++.++.|++++|.++++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344455555554443322 223344445555555555554332 3345555555555555555545444455554444
Q ss_pred CCccCCCccchhhcCCCCCcEEeCccCCCCccch
Q 014624 309 NNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 342 (421)
.| .+...|..+..+.++-.|+..+|.+..+|.
T Consensus 109 ~N--~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 109 FN--PLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cC--ccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 44 233333444444555555555555554443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=3.9e-08 Score=76.07 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcC-CCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG-LSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~-l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
.+..+++++|.+..+...+..+.....|+..++++|.+.++|..|.. .+.++.|++++|.++++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34556666665554443334444555666667777777766654433 34666777777777777766666777777777
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCcc
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPD 202 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~ 202 (421)
+.|.+...|..+..+.++-.|+..+|....++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 777666666655556666666666666665543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=1.7e-07 Score=80.87 Aligned_cols=246 Identities=20% Similarity=0.212 Sum_probs=157.9
Q ss_pred hhhcCCCCCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCC----CCc-------hhhhCCCCCcEEECcCCC
Q 014624 110 DSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRII----ELP-------DSIGDLLSLVYLDLRGNQ 173 (421)
Q Consensus 110 ~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~----~l~-------~~~~~l~~L~~L~l~~~~ 173 (421)
+.+..+..++.+++++|.+.+ +...+.+-.+|+..+++.-... .++ +.+..||+|+..++|+|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344457788899999998763 3345566778888888764322 222 334577888888888887
Q ss_pred CC-CCc----hhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchh
Q 014624 174 IS-ALP----VALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE 248 (421)
Q Consensus 174 l~-~l~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 248 (421)
+. ..| ..++..+.|.+|.+++|++..+.+. .--+.|.+|-. | +-...-|.|+.+.+..|++...+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~-rigkal~~la~--n------KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG-RIGKALFHLAY--N------KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchh-HHHHHHHHHHH--H------hhhccCCCceEEEeccchhccCcH
Confidence 66 233 2456667788888888877655321 00012222211 1 223456789999999999886653
Q ss_pred -----hhhccCCCCeeecccccCCc--CC----cccCCCCCCcEEECcCCCCCCC-----chhhhccCcccEEEccCCcc
Q 014624 249 -----AVGKIHTLEVLSVRYNNIKQ--LP----TTMSSLSSLRELDVSFNELESV-----PESLCFATTLVKMNIGNNFA 312 (421)
Q Consensus 249 -----~l~~~~~L~~L~l~~n~l~~--l~----~~l~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~L~~L~l~~~~~ 312 (421)
.+..-.+|+.+.+..|.|.. +. ..+..+.+|+.||+.+|-++.. ...++..+.|+.|.+.+|..
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 33444689999999998864 11 2445678999999999988733 34556667788888888854
Q ss_pred CCCccchhh-----cCCCCCcEEeCccCCCC--c-----cchh-hcCCCCCCEEEccCCCCCCCc
Q 014624 313 DLRALPRSI-----GNLEMLEELDISNNQIR--V-----LPDS-FRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 313 ~~~~~~~~~-----~~l~~L~~L~L~~n~l~--~-----l~~~-~~~l~~L~~L~l~~n~~~~~~ 364 (421)
........+ ...|+|..|...+|.+. . ++.. -..+|-|..+.+.||+++...
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 444333322 24678888888888544 1 2221 245677778888888887543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.2e-06 Score=54.74 Aligned_cols=40 Identities=43% Similarity=0.596 Sum_probs=30.6
Q ss_pred CCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 325 EMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
++|++|++++|+|+++|..+..+++|+.|++++|+++..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888877888888888888888887543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=4.8e-06 Score=69.06 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=60.7
Q ss_pred CCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhh-hccCcccEEEccCCccC-CCccchhhcCCCCCcEEeC
Q 014624 255 TLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL-CFATTLVKMNIGNNFAD-LRALPRSIGNLEMLEELDI 332 (421)
Q Consensus 255 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L 332 (421)
+...+|+++|.+..+ +.|..++.|.+|.+++|+|+.+...+ ..+++|..|.+.+|... +.++ ..+..||.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 445555666555554 34455556666666666666554333 23455666666555211 1111 23567788888888
Q ss_pred ccCCCCccch----hhcCCCCCCEEEccCCC
Q 014624 333 SNNQIRVLPD----SFRMLSRLRVLRVQENP 359 (421)
Q Consensus 333 ~~n~l~~l~~----~~~~l~~L~~L~l~~n~ 359 (421)
-+|.++.-.. .+..+|+|++|+..+-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8888885542 46788888888887654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.2e-06 Score=52.91 Aligned_cols=35 Identities=40% Similarity=0.626 Sum_probs=14.2
Q ss_pred CCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCC
Q 014624 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRII 152 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~ 152 (421)
|++|++++|.++++++.+.++++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 44444444444444333444444444444444444
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=2.2e-06 Score=86.84 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=91.4
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCc--CchhhcCCCCCcEEEccCCCCCCCchhhhCCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA--VPATIGGLSSLKKLDLHANRIIELPDSIGDLLS 163 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 163 (421)
-....+|++|+++|...-.-.+....-.-+|.|++|.+.+-.+.. +.....++|+|+.||+++++++.+ .+++++++
T Consensus 118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 345568999999885544333333344477889999998876652 344567888999999999888887 67888888
Q ss_pred CcEEECcCCCCCCCc--hhhcCCCCCCEEECCCCCCCCCcc-------ccCCCccccccccccccCC
Q 014624 164 LVYLDLRGNQISALP--VALSRLVRLEELDLGSNNLSSLPD-------SIGSLISLKKLIVETNDLE 221 (421)
Q Consensus 164 L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~-------~~~~l~~L~~L~l~~n~~~ 221 (421)
|+.|.+.+-.+..-. ..+..+++|+.||+|..+....+. .-..+|.|+.|+.+++.+.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888888776665422 256678888888888875553321 1123566666666665444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.6e-05 Score=74.46 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=81.1
Q ss_pred hhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCchhhcCCCCCCEEECCCC-CCCCCccccCCCcccc
Q 014624 134 TIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGN-QISALPVALSRLVRLEELDLGSN-NLSSLPDSIGSLISLK 211 (421)
Q Consensus 134 ~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~l~~L~ 211 (421)
.+..+.+++.|++++|.++.+|. -..+|+.|.+++| .++.+|..+. ++|+.|++++| .+..+|. +|+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 34557888999999888888872 2346889998875 4566665543 57888888887 5656654 355
Q ss_pred ccccccccCCCCcchhcCCcCccEEEcccCC-C--CCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCC
Q 014624 212 KLIVETNDLEELPHTIGQCSSLRELRVDYNR-L--KALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNE 288 (421)
Q Consensus 212 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~-l--~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~ 288 (421)
.|.+..+....+.. -.++|+.|.+.+++ . ..++.. -.++|++|++++|....+|..+. .+|+.|+++.+.
T Consensus 116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 55565544332211 01245566654322 1 111111 12467777777776555554433 567777776653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=3.2e-06 Score=85.60 Aligned_cols=128 Identities=23% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCCcEEEccCCCCC--CCchhhh-CCCCCcEEECcCCCCC--CCchhhcCCCCCCEEECCCCCCCCCccccCCCcccccc
Q 014624 139 SSLKKLDLHANRII--ELPDSIG-DLLSLVYLDLRGNQIS--ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKL 213 (421)
Q Consensus 139 ~~L~~L~L~~~~i~--~l~~~~~-~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L 213 (421)
.+|++|++++...- ..+..++ .+|.|+.|.+++-.+. ++.....++|+|..||+++++++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56777777765322 2233333 4677777777775544 2334556777777777777777766 456777777777
Q ss_pred ccccccCCCC--cchhcCCcCccEEEcccCCCCCchh-------hhhccCCCCeeecccccCC
Q 014624 214 IVETNDLEEL--PHTIGQCSSLRELRVDYNRLKALPE-------AVGKIHTLEVLSVRYNNIK 267 (421)
Q Consensus 214 ~l~~n~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~-------~l~~~~~L~~L~l~~n~l~ 267 (421)
.+.+-.+... ...+..+.+|+.||+|.......+. .-..+++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7666555432 2345566777777777654442221 1123455555555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=3.2e-05 Score=72.54 Aligned_cols=134 Identities=20% Similarity=0.321 Sum_probs=92.5
Q ss_pred hhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCC-CCCCCchhhhCCCCCcEEECcCC-CCCCCchhhcCCCCCC
Q 014624 111 SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHAN-RIIELPDSIGDLLSLVYLDLRGN-QISALPVALSRLVRLE 188 (421)
Q Consensus 111 ~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~ 188 (421)
.+..++++++|++++|.+..+|. + -.+|+.|.+++| .++.+|..+ .++|++|++++| .+..+|. .|+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 35567899999999999888872 2 246999999875 556666655 368999999998 6766663 577
Q ss_pred EEECCCCCCC---CCccccCCCccccccccccccCC---CCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecc
Q 014624 189 ELDLGSNNLS---SLPDSIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVR 262 (421)
Q Consensus 189 ~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~ 262 (421)
.|++..+... .+|. +|+.|.+.++... .++. .-.++|+.|++++|....+|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 7888776544 3443 4667766432211 1111 112579999999998776665444 589999998
Q ss_pred ccc
Q 014624 263 YNN 265 (421)
Q Consensus 263 ~n~ 265 (421)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=4e-05 Score=63.74 Aligned_cols=99 Identities=27% Similarity=0.292 Sum_probs=43.7
Q ss_pred CCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhh-CCCCCcEEECcCCCCCCCch--hhcCCCCCCEEECCC
Q 014624 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIG-DLLSLVYLDLRGNQISALPV--ALSRLVRLEELDLGS 194 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~ 194 (421)
...+|+++|.+..+ ..|..++.|..|.+++|.|+.+.+.+. .+++|..|.+.+|.+..+.. .+..+|+|+.|.+-+
T Consensus 44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34445555544433 223444555555555555554433222 23445555555554443321 234445555555555
Q ss_pred CCCCCCc----cccCCCcccccccccc
Q 014624 195 NNLSSLP----DSIGSLISLKKLIVET 217 (421)
Q Consensus 195 ~~l~~~~----~~~~~l~~L~~L~l~~ 217 (421)
|.+..-. ..+..+++|+.|++.+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 5444221 2234445555555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=2.5e-05 Score=67.63 Aligned_cols=105 Identities=27% Similarity=0.331 Sum_probs=58.5
Q ss_pred CcCccEEEcccCCCCCchhhhhccCCCCeeecccc--cCCc-CCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEE
Q 014624 230 CSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYN--NIKQ-LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMN 306 (421)
Q Consensus 230 ~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n--~l~~-l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 306 (421)
...|+.+++.+..++++ ..+..+++|++|.++.| .+.. ++.....+|+|++|++++|++..+
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-------------- 106 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-------------- 106 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--------------
Confidence 33455555555555544 23344556666666666 3322 333334446666666666665432
Q ss_pred ccCCccCCCccchhhcCCCCCcEEeCccCCCCccch----hhcCCCCCCEEEccCC
Q 014624 307 IGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD----SFRMLSRLRVLRVQEN 358 (421)
Q Consensus 307 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l~~n 358 (421)
..+ ..+..+++|..|++.+|..+.+.. .+.-+++|+.++-...
T Consensus 107 --------stl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 107 --------STL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred --------ccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 111 235567778888888887775542 4566777777655444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=7.2e-06 Score=71.34 Aligned_cols=102 Identities=31% Similarity=0.303 Sum_probs=80.1
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch--hhhCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD--SIGDLL 162 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~--~~~~l~ 162 (421)
..+.+.++++|++.||++.++. ...+++.|++|.|+-|+++++ ..+..|+.|+.|+|..|.|..+.+ .+.+++
T Consensus 14 K~sdl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 14 KCSDLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HhhHHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3445668899999999998875 556899999999999999988 457899999999999999987743 567899
Q ss_pred CCcEEECcCCCCC--CCc----hhhcCCCCCCEEE
Q 014624 163 SLVYLDLRGNQIS--ALP----VALSRLVRLEELD 191 (421)
Q Consensus 163 ~L~~L~l~~~~l~--~l~----~~~~~~~~L~~L~ 191 (421)
+|+.|.|..|.=. .-+ ..+..+|+|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999887422 111 2456677888775
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=3.2e-05 Score=76.46 Aligned_cols=228 Identities=21% Similarity=0.166 Sum_probs=111.6
Q ss_pred CCCCCCEEEccCCc-CCc--CchhhcCCCCCcEEEccCC--CCCCC----chhhhCCCCCcEEECcCCC-CCCC--chhh
Q 014624 114 KLSSLVSLDLSENR-IVA--VPATIGGLSSLKKLDLHAN--RIIEL----PDSIGDLLSLVYLDLRGNQ-ISAL--PVAL 181 (421)
Q Consensus 114 ~~~~L~~L~l~~~~-l~~--~~~~l~~l~~L~~L~L~~~--~i~~l----~~~~~~l~~L~~L~l~~~~-l~~l--~~~~ 181 (421)
.++.|+.+.+.++. +.. +......+++|+.|+++++ .+... ......+.+|+.|+++.+. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777777777663 333 3345566777777777662 11111 1233345677777777765 5532 2222
Q ss_pred cCCCCCCEEECCCCC-CC--CCccccCCCccccccccccccCC---CCcchhcCCcCccEEEcccCCCCCchhhhhccCC
Q 014624 182 SRLVRLEELDLGSNN-LS--SLPDSIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHT 255 (421)
Q Consensus 182 ~~~~~L~~L~l~~~~-l~--~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~ 255 (421)
..+++|+.|.+.+|. ++ .+-.....++.|++|+++++... .+.....++++++.+.+....- +..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~ 336 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPS 336 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------Ccc
Confidence 336777777766665 33 22233445666777777765432 1222234455555544332211 333
Q ss_pred CCeeecccccC-C--c-CCcccCCCCCCcEEECcCCCCCCCc--hhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 256 LEVLSVRYNNI-K--Q-LPTTMSSLSSLRELDVSFNELESVP--ESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 256 L~~L~l~~n~l-~--~-l~~~l~~~~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
++.+.+.++.. . . .......+++++.+.+..+...+.. ..+..++.|. ..+.. .......++.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~ 405 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRV 405 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH----------HhccCCccce
Confidence 34444333211 0 1 1124456666666666666644332 2333344441 11111 1122223677
Q ss_pred EeCccCCCCccc--hhhcC-CCCCCEEEccCCCCC
Q 014624 330 LDISNNQIRVLP--DSFRM-LSRLRVLRVQENPLE 361 (421)
Q Consensus 330 L~L~~n~l~~l~--~~~~~-l~~L~~L~l~~n~~~ 361 (421)
|+++.|...... ..... +..+..+++.+++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 777777433221 11111 566677777776643
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=2e-05 Score=68.62 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=44.2
Q ss_pred ccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC--cccCCCCCCcEEECc
Q 014624 208 ISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVS 285 (421)
Q Consensus 208 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~L~ 285 (421)
.+.++|++.++.+..+ ....+++.|+.|.|+-|.++++ +.+..|++|++|.|..|.|.++. ..+.++|+|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3455555555555544 3344555666666666666655 34455566666666666555543 245556666666665
Q ss_pred CCC
Q 014624 286 FNE 288 (421)
Q Consensus 286 ~n~ 288 (421)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00024 Score=61.68 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=35.2
Q ss_pred CCCCEEEccCCcCCcCchhhcCCCCCcEEEccCC--CCC-CCchhhhCCCCCcEEECcCCCCCCCc--hhhcCCCCCCEE
Q 014624 116 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHAN--RII-ELPDSIGDLLSLVYLDLRGNQISALP--VALSRLVRLEEL 190 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~--~i~-~l~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L 190 (421)
..|+.+++.++.++++ ..+..+++|++|.++.| .++ .++.....+++|++|++++|++..+. ..+..+++|..|
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 3344444444444433 12334455555555555 222 22222233455555555555444321 123344445555
Q ss_pred ECCCCCCC
Q 014624 191 DLGSNNLS 198 (421)
Q Consensus 191 ~l~~~~l~ 198 (421)
++..|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55555443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.0001 Score=72.80 Aligned_cols=166 Identities=23% Similarity=0.186 Sum_probs=81.8
Q ss_pred CCCCCcEEEccCC-CCCC--CchhhhCCCCCcEEECcCC--CCCCC----chhhcCCCCCCEEECCCCC-CCCC--cccc
Q 014624 137 GLSSLKKLDLHAN-RIIE--LPDSIGDLLSLVYLDLRGN--QISAL----PVALSRLVRLEELDLGSNN-LSSL--PDSI 204 (421)
Q Consensus 137 ~l~~L~~L~L~~~-~i~~--l~~~~~~l~~L~~L~l~~~--~l~~l----~~~~~~~~~L~~L~l~~~~-l~~~--~~~~ 204 (421)
.++.|+.+.+.++ .+.. +......+++|+.|+++++ .+... ......+++|+.++++++. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3567777777665 3333 3344456677777777652 11111 1233445667777777765 3322 1112
Q ss_pred CCCcccccccccccc-CC--CCcchhcCCcCccEEEcccCCCC---CchhhhhccCCCCeeecccccCCcCCcccCCCCC
Q 014624 205 GSLISLKKLIVETND-LE--ELPHTIGQCSSLRELRVDYNRLK---ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSS 278 (421)
Q Consensus 205 ~~l~~L~~L~l~~n~-~~--~~~~~~~~~~~L~~L~l~~~~l~---~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~ 278 (421)
..+++|+.|.+.++. ++ .+......++.|++|++++|... .+.....++++++.|.+.... +++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c~~ 336 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GCPS 336 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CCcc
Confidence 235667776655554 33 23334455666777777766543 122233445555554443221 1344
Q ss_pred CcEEECcCCCCC----CCchhhhccCcccEEEccCCc
Q 014624 279 LRELDVSFNELE----SVPESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 279 L~~L~L~~n~l~----~~~~~~~~~~~L~~L~l~~~~ 311 (421)
++.+.+.+.... ........++.++.+.+..+.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 444444333221 111234456666666665553
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.87 E-value=8.2e-06 Score=79.17 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=24.5
Q ss_pred CccchhhcCCCCCcEEeCccCCCCccc-----hhhcCCCCCCEEEccCCCC
Q 014624 315 RALPRSIGNLEMLEELDISNNQIRVLP-----DSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 315 ~~~~~~~~~l~~L~~L~L~~n~l~~l~-----~~~~~l~~L~~L~l~~n~~ 360 (421)
..++..+..++.++++.+++|.++.-. ........+..+.+.++..
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 344555566667777777777666321 2233334444455554443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0037 Score=49.47 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=32.6
Q ss_pred hhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCC
Q 014624 111 SIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRL 187 (421)
Q Consensus 111 ~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L 187 (421)
.|.++.+|+.+.+.. .+..+ ..+|.++++|+.+.+..+ +..++. .+..+++++.+.+.+ .+..++. .+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 444555566655553 34444 234555555666665543 443332 344454555555544 3333322 33445555
Q ss_pred CEEECCC
Q 014624 188 EELDLGS 194 (421)
Q Consensus 188 ~~L~l~~ 194 (421)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.43 E-value=0.0097 Score=47.03 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=12.4
Q ss_pred hccCCCCeeecccccCCcCC-cccCCCCCCcEEECc
Q 014624 251 GKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVS 285 (421)
Q Consensus 251 ~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~ 285 (421)
..+.+++.+.+.++ +..++ ..+.++++++.+.+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred cccccccccccccc-ccccceeeeeccccccccccc
Confidence 33444444444442 33332 234444445555543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0022 Score=33.25 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=15.1
Q ss_pred CCcEEeCccCCCCccchhhcC
Q 014624 326 MLEELDISNNQIRVLPDSFRM 346 (421)
Q Consensus 326 ~L~~L~L~~n~l~~l~~~~~~ 346 (421)
+|++|+|++|+++.+|..++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888888877776543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.84 E-value=0.0001 Score=71.66 Aligned_cols=80 Identities=29% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCCCC-----chhhhCC-CCCcEEECcCCCCCC-----Cchhh
Q 014624 118 LVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIEL-----PDSIGDL-LSLVYLDLRGNQISA-----LPVAL 181 (421)
Q Consensus 118 L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~~l-----~~~~~~l-~~L~~L~l~~~~l~~-----l~~~~ 181 (421)
+..+.+.+|.+.. +...+...+.|..|++++|.+..- ...+... ..+++|++..|.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666667776653 233556667777777777766621 1111111 344555555555442 22334
Q ss_pred cCCCCCCEEECCCCCC
Q 014624 182 SRLVRLEELDLGSNNL 197 (421)
Q Consensus 182 ~~~~~L~~L~l~~~~l 197 (421)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4445555555555544
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.19 E-value=0.011 Score=28.40 Aligned_cols=16 Identities=50% Similarity=0.794 Sum_probs=7.1
Q ss_pred CCcEEeCccCCCCccc
Q 014624 326 MLEELDISNNQIRVLP 341 (421)
Q Consensus 326 ~L~~L~L~~n~l~~l~ 341 (421)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.0089 Score=30.96 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.0
Q ss_pred cEEEccCCCCC
Q 014624 142 KKLDLHANRII 152 (421)
Q Consensus 142 ~~L~L~~~~i~ 152 (421)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.29 E-value=0.0046 Score=52.88 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=51.8
Q ss_pred CCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEE
Q 014624 274 SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVL 353 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 353 (421)
..+...+.||++.|++..+...+..+..+..|+++.| .+..+|..++....++.+++.+|..+..|.++...|+++.+
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn--q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN--QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh--hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3444455566666655555555555555566666655 44455555655666666666667777777667777777777
Q ss_pred EccCCCC
Q 014624 354 RVQENPL 360 (421)
Q Consensus 354 ~l~~n~~ 360 (421)
++.++++
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 7777664
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.74 E-value=0.17 Score=27.20 Aligned_cols=18 Identities=56% Similarity=0.774 Sum_probs=11.9
Q ss_pred CCCcEEeCccCCCCccch
Q 014624 325 EMLEELDISNNQIRVLPD 342 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~ 342 (421)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456667777776666665
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.74 E-value=0.17 Score=27.20 Aligned_cols=18 Identities=56% Similarity=0.774 Sum_probs=11.9
Q ss_pred CCCcEEeCccCCCCccch
Q 014624 325 EMLEELDISNNQIRVLPD 342 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~ 342 (421)
++|++|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456667777776666665
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=0.055 Score=45.52 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCCCCcEEeCccC-CCCccc-hhhcCCCCCCEEEccCCCC
Q 014624 323 NLEMLEELDISNN-QIRVLP-DSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 323 ~l~~L~~L~L~~n-~l~~l~-~~~~~l~~L~~L~l~~n~~ 360 (421)
-.++|+.|+|++| +||+-. .++..+++|+.|.+.+-+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 3578899999988 888654 4678888888888876653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.77 E-value=0.0067 Score=51.93 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECC
Q 014624 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLG 193 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 193 (421)
.+...+.||++.|.+..+...|..++.|..|+++.|.+..+|..+.....+.++++.+|..+..|..+...+++++++.-
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 44555666666665554444455555566666666666666666666666666666666666666666666666666666
Q ss_pred CCCCC
Q 014624 194 SNNLS 198 (421)
Q Consensus 194 ~~~l~ 198 (421)
++.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 65443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.39 E-value=0.41 Score=25.67 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.8
Q ss_pred CCCCCEEEccCCCCCCCcHHHHh
Q 014624 347 LSRLRVLRVQENPLEVPPRNIVE 369 (421)
Q Consensus 347 l~~L~~L~l~~n~~~~~~~~~~~ 369 (421)
+++|+.|++++|.+...+..++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999887664
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.39 E-value=0.41 Score=25.67 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.8
Q ss_pred CCCCCEEEccCCCCCCCcHHHHh
Q 014624 347 LSRLRVLRVQENPLEVPPRNIVE 369 (421)
Q Consensus 347 l~~L~~L~l~~n~~~~~~~~~~~ 369 (421)
+++|+.|++++|.+...+..++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999887664
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.78 E-value=3.3 Score=39.77 Aligned_cols=110 Identities=20% Similarity=0.077 Sum_probs=58.0
Q ss_pred hHHHHHHhcccccccCccceeeecccCC-CCCccchHHhhhhhhhccCCCCCcEEEcCCccccc-ccccchhhcCCCCCC
Q 014624 42 TDFLILQLGSIIFRNKVPIMIMCMCCVG-QDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDN-IEWLPDSIGKLSSLV 119 (421)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~ 119 (421)
+.++.+|++.+.+.+++|..+.+-..-. ...+..+-..+..+..-+....+.+++++.+...+ +.........-.-++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 4678899999999999886655433211 12222222222233333344467788888776655 222212222223466
Q ss_pred EEEccCCcCC--cC--chhhcCCCCCcEEEccCCCC
Q 014624 120 SLDLSENRIV--AV--PATIGGLSSLKKLDLHANRI 151 (421)
Q Consensus 120 ~L~l~~~~l~--~~--~~~l~~l~~L~~L~L~~~~i 151 (421)
.++.+...+. .. +.....-++|+..+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 6666666543 11 22334455677777766543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.42 E-value=0.55 Score=25.26 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=14.0
Q ss_pred CCCcEEeCccCCCCccch
Q 014624 325 EMLEELDISNNQIRVLPD 342 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~ 342 (421)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457788888888888876
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=0.16 Score=42.74 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=32.7
Q ss_pred CccEEEcccCCCCCch-hhhhccCCCCeeecccccCCc---CCcccCCCCCCcEEECcCCC-CC
Q 014624 232 SLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQ---LPTTMSSLSSLRELDVSFNE-LE 290 (421)
Q Consensus 232 ~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~---l~~~l~~~~~L~~L~L~~n~-l~ 290 (421)
.++.++-+++.+.... ..+..++.++.|.+.+|.--. +...-+..++|+.|++++|. |+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 4667777766665332 455666667777776663221 11111244667777777663 54
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.28 E-value=0.8 Score=23.96 Aligned_cols=14 Identities=64% Similarity=0.776 Sum_probs=5.7
Q ss_pred CCCcEEeCccCCCC
Q 014624 325 EMLEELDISNNQIR 338 (421)
Q Consensus 325 ~~L~~L~L~~n~l~ 338 (421)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555443
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.72 E-value=1.7 Score=50.70 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=32.5
Q ss_pred eCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 331 DISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 331 ~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
||++|+|+.++. .|..+++|+.|+|++||+.|.|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 689999999986 688899999999999999999964
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.08 E-value=2.1 Score=23.06 Aligned_cols=16 Identities=50% Similarity=0.758 Sum_probs=10.6
Q ss_pred CCCcEEeCccCCCCcc
Q 014624 325 EMLEELDISNNQIRVL 340 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l 340 (421)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4567777777776644
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.87 E-value=1.6 Score=42.58 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCCCCcEEECcCCCCCCC---chhhhccCcccEEEccCCccCCCccchhhc--CCCCCcEEeCccCCCC
Q 014624 275 SLSSLRELDVSFNELESV---PESLCFATTLVKMNIGNNFADLRALPRSIG--NLEMLEELDISNNQIR 338 (421)
Q Consensus 275 ~~~~L~~L~L~~n~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~ 338 (421)
+.+.+..++|++|++..+ .......|+|+.|+|++|...+...++ +. +...|++|-+.||.|.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccc
Confidence 344455555555554322 223334555566666555322222221 21 2345777888888776
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.99 E-value=1.9 Score=42.21 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=40.3
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCC--cCCcCch-hhcCCCCCcEEEccCCCCC
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSEN--RIVAVPA-TIGGLSSLKKLDLHANRII 152 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~l~~~~~-~l~~l~~L~~L~L~~~~i~ 152 (421)
..+.+..+++++|.+..+..+...-...|+|+.|+|++| .+...++ .-.+...|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 456677777777777777666655567777777777777 3332211 0112345677777777665
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.79 E-value=2.4 Score=22.68 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=7.1
Q ss_pred CCCcEEeCccC-CCC
Q 014624 325 EMLEELDISNN-QIR 338 (421)
Q Consensus 325 ~~L~~L~L~~n-~l~ 338 (421)
++|++|+|++| .|+
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 44555555555 344
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.59 E-value=5.4 Score=21.80 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.1
Q ss_pred CCcEEeCccCCCC
Q 014624 326 MLEELDISNNQIR 338 (421)
Q Consensus 326 ~L~~L~L~~n~l~ 338 (421)
+|++|+|++|.|+
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.86 E-value=89 Score=30.50 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHhcccccccCccce
Q 014624 44 FLILQLGSIIFRNKVPIM 61 (421)
Q Consensus 44 L~~L~l~~~~~~~~~~~~ 61 (421)
++.+|++.+...+.+|..
T Consensus 216 lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRT 233 (553)
T ss_pred ccccccccCCCCccchhH
Confidence 678888888888888864
Done!