Query 014624
Match_columns 421
No_of_seqs 304 out of 4582
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 2.6E-33 9E-38 283.7 16.2 319 40-364 247-603 (636)
2 4ecn_A Leucine-rich repeat pro 100.0 1.5E-32 5.3E-37 283.4 22.1 319 40-364 489-843 (876)
3 4fmz_A Internalin; leucine ric 100.0 3.1E-31 1E-35 249.3 26.2 261 89-363 65-326 (347)
4 4ecn_A Leucine-rich repeat pro 100.0 2.1E-32 7.1E-37 282.5 19.2 325 31-366 440-824 (876)
5 4eco_A Uncharacterized protein 100.0 5.6E-33 1.9E-37 281.3 14.7 325 31-366 198-584 (636)
6 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5.1E-36 255.5 18.3 263 87-364 90-355 (390)
7 4fmz_A Internalin; leucine ric 100.0 4.2E-30 1.4E-34 241.6 27.6 306 39-361 41-346 (347)
8 3v47_A TOLL-like receptor 5B a 100.0 3.5E-31 1.2E-35 258.2 19.8 317 42-366 30-413 (455)
9 3rgz_A Protein brassinosteroid 100.0 8.2E-32 2.8E-36 278.7 15.9 270 91-363 369-719 (768)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.3E-31 2.1E-35 265.6 20.7 184 182-366 373-563 (606)
11 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-30 5.7E-35 257.7 20.1 158 205-366 321-486 (520)
12 2id5_A Lingo-1, leucine rich r 100.0 1.3E-30 4.4E-35 255.7 18.5 278 86-366 52-338 (477)
13 3rgz_A Protein brassinosteroid 100.0 6.1E-31 2.1E-35 272.2 15.9 277 88-367 341-700 (768)
14 3oja_B Anopheles plasmodium-re 100.0 2.3E-30 8E-35 260.5 19.2 263 87-364 96-361 (597)
15 1o6v_A Internalin A; bacterial 100.0 1.3E-29 4.4E-34 247.7 23.5 308 38-364 64-391 (466)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-29 3.7E-34 254.1 22.4 272 85-366 71-515 (562)
17 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-30 1.8E-34 255.9 19.1 341 20-366 27-515 (549)
18 3o6n_A APL1; leucine-rich repe 100.0 9.5E-30 3.2E-34 243.0 19.3 265 87-364 66-334 (390)
19 3t6q_A CD180 antigen; protein- 100.0 1.3E-29 4.3E-34 256.1 18.8 312 43-362 34-414 (606)
20 1o6v_A Internalin A; bacterial 100.0 2E-28 6.9E-33 239.3 26.3 265 86-365 86-370 (466)
21 2z63_A TOLL-like receptor 4, v 100.0 4.9E-30 1.7E-34 257.2 15.2 115 250-366 417-536 (570)
22 3t6q_A CD180 antigen; protein- 100.0 1.9E-29 6.5E-34 254.8 18.0 182 181-363 274-491 (606)
23 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-29 6E-34 255.0 17.8 132 42-177 32-168 (606)
24 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-29 9.4E-34 249.0 18.8 136 228-366 321-462 (520)
25 3oja_B Anopheles plasmodium-re 100.0 5.3E-29 1.8E-33 250.6 19.3 265 87-364 72-340 (597)
26 3v47_A TOLL-like receptor 5B a 100.0 1.6E-28 5.6E-33 239.3 22.1 275 90-368 30-391 (455)
27 2z63_A TOLL-like receptor 4, v 100.0 4E-30 1.4E-34 257.8 10.8 209 159-368 279-514 (570)
28 2id5_A Lingo-1, leucine rich r 100.0 4.5E-28 1.5E-32 237.6 24.1 276 89-368 31-316 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 4.2E-28 1.4E-32 235.4 22.9 319 19-362 11-371 (454)
30 2z81_A CD282 antigen, TOLL-lik 100.0 8.6E-29 2.9E-33 247.0 17.3 272 42-341 26-426 (549)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-27 6.4E-32 231.0 26.1 299 38-363 38-354 (457)
32 1xku_A Decorin; proteoglycan, 100.0 1.7E-27 5.7E-32 222.2 24.8 261 91-362 32-307 (330)
33 1xku_A Decorin; proteoglycan, 100.0 1.6E-27 5.6E-32 222.3 24.6 263 89-359 51-330 (330)
34 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-27 4.8E-32 222.9 23.5 261 90-359 54-331 (332)
35 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5.1E-32 222.7 22.4 259 91-361 34-307 (332)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-27 3.9E-32 239.5 22.7 267 90-366 52-491 (562)
37 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-28 2.5E-32 246.5 19.8 277 86-366 325-627 (680)
38 3g06_A SSPH2 (leucine-rich rep 100.0 7E-27 2.4E-31 233.8 24.2 241 90-365 61-301 (622)
39 2z80_A TOLL-like receptor 2, v 100.0 1.7E-27 5.9E-32 224.2 18.3 251 117-367 53-320 (353)
40 4fcg_A Uncharacterized protein 99.9 7E-27 2.4E-31 217.5 20.0 234 115-363 80-316 (328)
41 2z66_A Variable lymphocyte rec 99.9 5.6E-27 1.9E-31 216.3 18.9 228 116-366 28-266 (306)
42 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-28 1.6E-32 224.0 11.1 246 90-360 50-303 (313)
43 3j0a_A TOLL-like receptor 5; m 99.9 6.2E-27 2.1E-31 244.7 20.8 155 41-221 23-187 (844)
44 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-26 7.4E-31 235.6 24.1 255 112-368 325-604 (680)
45 4fcg_A Uncharacterized protein 99.9 7.1E-27 2.4E-31 217.4 18.6 220 137-371 79-301 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 2E-27 6.8E-32 219.8 13.9 203 85-290 71-281 (313)
47 4g8a_A TOLL-like receptor 4; l 99.9 5E-26 1.7E-30 230.8 24.5 112 253-366 468-585 (635)
48 1jl5_A Outer protein YOPM; leu 99.9 1.6E-26 5.5E-31 224.3 19.8 227 41-293 10-253 (454)
49 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-25 8.3E-30 216.1 28.1 257 85-364 59-334 (457)
50 3j0a_A TOLL-like receptor 5; m 99.9 9.7E-27 3.3E-31 243.2 18.2 312 20-362 25-395 (844)
51 3zyj_A Leucine-rich repeat-con 99.9 7.6E-26 2.6E-30 219.4 21.5 245 92-366 45-297 (440)
52 3zyi_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 219.0 21.4 246 92-366 56-308 (452)
53 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-24 6.6E-29 216.2 26.5 244 90-370 40-283 (622)
54 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-27 2.2E-31 216.9 7.7 220 110-362 28-251 (317)
55 2z66_A Variable lymphocyte rec 99.9 4.9E-26 1.7E-30 209.9 13.0 202 89-292 27-238 (306)
56 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-25 4.9E-30 207.8 15.2 215 119-366 13-232 (317)
57 3oja_A Leucine-rich immune mol 99.9 1.1E-25 3.7E-30 220.6 13.3 231 116-356 34-270 (487)
58 1wwl_A Monocyte differentiatio 99.9 7.7E-27 2.6E-31 215.9 4.1 242 88-363 41-311 (312)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-24 9.8E-29 196.0 20.5 222 119-366 14-243 (285)
60 1z7x_W Ribonuclease inhibitor; 99.9 5E-27 1.7E-31 229.2 1.6 326 38-363 24-413 (461)
61 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-24 1.1E-28 195.8 17.1 215 93-312 14-237 (285)
62 1wwl_A Monocyte differentiatio 99.9 1.4E-25 4.9E-30 207.3 7.2 215 92-310 65-306 (312)
63 3zyj_A Leucine-rich repeat-con 99.9 1.9E-23 6.3E-28 202.6 20.7 222 89-313 63-292 (440)
64 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.9E-28 190.6 19.7 202 114-365 8-212 (290)
65 3zyi_A Leucine-rich repeat-con 99.9 2.1E-23 7.2E-28 202.9 20.6 222 89-313 74-303 (452)
66 2z80_A TOLL-like receptor 2, v 99.9 7E-24 2.4E-28 199.5 16.3 253 114-368 29-297 (353)
67 3oja_A Leucine-rich immune mol 99.9 4E-24 1.4E-28 209.4 15.1 217 137-363 32-252 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 4.6E-23 1.6E-27 187.1 19.3 223 120-367 11-243 (276)
69 1z7x_W Ribonuclease inhibitor; 99.9 7E-26 2.4E-30 221.0 0.7 276 86-362 52-384 (461)
70 1h6u_A Internalin H; cell adhe 99.9 9.9E-23 3.4E-27 187.8 18.4 210 122-342 25-234 (308)
71 1h6u_A Internalin H; cell adhe 99.9 1.9E-22 6.5E-27 185.8 20.0 195 88-293 39-233 (308)
72 2ca6_A RAN GTPase-activating p 99.9 2.1E-24 7.3E-29 205.6 6.2 248 104-365 20-320 (386)
73 2o6q_A Variable lymphocyte rec 99.9 8.1E-22 2.8E-26 178.3 21.2 201 140-366 17-223 (270)
74 1p9a_G Platelet glycoprotein I 99.9 1E-21 3.5E-26 179.2 19.7 200 85-290 5-208 (290)
75 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-21 4.6E-26 198.2 22.7 131 89-221 51-186 (635)
76 2z62_A TOLL-like receptor 4, v 99.9 5.7E-22 1.9E-26 179.9 17.0 196 94-294 11-217 (276)
77 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5.1E-26 173.2 12.7 205 128-359 23-237 (239)
78 2o6q_A Variable lymphocyte rec 99.9 3E-20 1E-24 167.9 21.0 194 91-289 17-217 (270)
79 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.5E-26 172.5 12.5 192 116-310 31-236 (239)
80 3ogk_B Coronatine-insensitive 99.9 1.3E-22 4.5E-27 204.1 4.5 275 89-363 191-528 (592)
81 3goz_A Leucine-rich repeat-con 99.9 2.8E-22 9.5E-27 189.2 6.0 247 95-363 3-299 (362)
82 3rfs_A Internalin B, repeat mo 99.9 4.7E-21 1.6E-25 173.4 13.7 221 91-348 20-246 (272)
83 3rfs_A Internalin B, repeat mo 99.9 1.3E-20 4.3E-25 170.5 16.3 221 39-296 16-242 (272)
84 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.4E-26 182.7 8.5 193 90-287 47-257 (336)
85 2ca6_A RAN GTPase-activating p 99.8 3.5E-22 1.2E-26 190.3 4.7 254 86-358 28-340 (386)
86 4glp_A Monocyte differentiatio 99.8 3.7E-21 1.3E-25 177.5 11.0 221 88-312 62-306 (310)
87 4glp_A Monocyte differentiatio 99.8 1E-20 3.4E-25 174.6 13.7 221 114-339 62-308 (310)
88 3goz_A Leucine-rich repeat-con 99.8 1.6E-21 5.5E-26 184.0 7.9 235 88-339 20-298 (362)
89 2ast_B S-phase kinase-associat 99.8 4.5E-21 1.5E-25 179.0 9.5 245 116-365 47-310 (336)
90 3cvr_A Invasion plasmid antige 99.8 6.5E-20 2.2E-24 181.3 16.9 176 116-311 59-241 (571)
91 3cvr_A Invasion plasmid antige 99.8 7.9E-20 2.7E-24 180.7 17.5 185 140-346 60-252 (571)
92 1h6t_A Internalin B; cell adhe 99.8 1.6E-20 5.6E-25 171.4 11.3 172 113-291 43-214 (291)
93 3ogk_B Coronatine-insensitive 99.8 4.3E-22 1.5E-26 200.4 0.5 325 35-362 105-477 (592)
94 1h6t_A Internalin B; cell adhe 99.8 3.9E-19 1.4E-23 162.2 18.2 173 88-270 44-216 (291)
95 3m19_A Variable lymphocyte rec 99.8 5.4E-19 1.9E-23 157.8 18.3 176 163-364 15-195 (251)
96 2p1m_B Transport inhibitor res 99.8 1.6E-21 5.6E-26 196.2 -2.3 131 229-360 370-518 (594)
97 3m19_A Variable lymphocyte rec 99.8 2.2E-18 7.4E-23 153.9 17.7 172 118-291 16-193 (251)
98 1m9s_A Internalin B; cell inva 99.8 2.6E-19 8.8E-24 178.9 11.7 170 114-290 41-210 (605)
99 1m9s_A Internalin B; cell inva 99.8 4.4E-18 1.5E-22 170.0 17.8 196 39-270 18-213 (605)
100 4ay9_X Follicle-stimulating ho 99.8 4.8E-18 1.7E-22 159.3 16.3 234 93-335 12-256 (350)
101 2p1m_B Transport inhibitor res 99.8 3.7E-21 1.3E-25 193.6 -6.0 161 200-362 281-470 (594)
102 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.8E-23 156.7 10.7 166 92-291 21-186 (263)
103 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 160.2 13.7 216 90-310 30-256 (350)
104 1xeu_A Internalin C; cellular 99.8 1.8E-18 6.1E-23 155.4 9.5 171 161-341 18-188 (263)
105 3e6j_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 142.8 17.2 135 231-367 40-178 (229)
106 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.5E-22 141.7 13.7 153 205-362 41-195 (197)
107 1dce_A Protein (RAB geranylger 99.7 1.8E-20 6E-25 186.2 -6.9 120 232-355 442-567 (567)
108 4ezg_A Putative uncharacterize 99.7 1.7E-17 6E-22 142.3 11.8 151 114-290 42-194 (197)
109 2v9t_B SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 142.7 13.9 151 189-365 15-169 (220)
110 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.6E-22 155.9 11.9 179 165-366 21-207 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 5.4E-17 1.8E-21 141.7 13.7 132 233-366 34-171 (220)
112 2o6s_A Variable lymphocyte rec 99.7 6.3E-17 2.1E-21 140.1 12.7 176 142-349 10-190 (208)
113 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.3E-24 180.0 -6.0 177 113-291 346-547 (567)
114 2o6s_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 135.4 14.9 164 119-290 10-178 (208)
115 3e6j_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 134.8 15.5 150 118-291 21-173 (229)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-15 3.5E-20 133.6 13.1 148 119-290 14-166 (220)
117 2v9t_B SLIT homolog 2 protein 99.6 1.3E-15 4.5E-20 132.9 13.4 148 119-290 14-165 (220)
118 2xot_A Amphoterin-induced prot 99.6 3.5E-16 1.2E-20 147.2 10.3 149 93-246 21-178 (361)
119 2ell_A Acidic leucine-rich nuc 99.6 8.9E-16 3E-20 128.0 11.6 133 230-365 23-164 (168)
120 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 127.5 9.8 135 88-224 22-163 (168)
121 4b8c_D Glucose-repressible alc 99.6 5.2E-16 1.8E-20 158.8 7.7 183 172-361 211-404 (727)
122 2je0_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 121.4 10.3 125 230-357 16-149 (149)
123 4b8c_D Glucose-repressible alc 99.6 7.5E-16 2.6E-20 157.6 7.1 138 131-268 216-355 (727)
124 2wfh_A SLIT homolog 2 protein 99.6 8.2E-15 2.8E-19 125.0 12.3 128 212-365 14-143 (193)
125 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-15 1.6E-19 124.6 10.1 133 226-361 14-153 (176)
126 1w8a_A SLIT protein; signaling 99.6 9.9E-15 3.4E-19 124.4 11.6 127 235-365 12-143 (192)
127 3sb4_A Hypothetical leucine ri 99.6 5.2E-15 1.8E-19 137.4 9.1 256 90-355 25-328 (329)
128 2je0_A Acidic leucine-rich nuc 99.6 9.8E-15 3.4E-19 119.1 9.3 108 185-293 17-129 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 9E-19 120.0 9.4 133 85-221 14-153 (176)
130 2o6r_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 113.1 14.1 129 234-366 10-142 (177)
131 4fdw_A Leucine rich hypothetic 99.5 2E-12 6.7E-17 122.9 19.6 254 90-359 113-381 (401)
132 3sb4_A Hypothetical leucine ri 99.5 9.9E-14 3.4E-18 128.7 9.6 234 89-332 48-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.5 1.3E-15 4.4E-20 130.7 -3.4 136 222-363 39-187 (198)
134 1w8a_A SLIT protein; signaling 99.5 2.7E-13 9.3E-18 115.4 11.0 123 166-290 12-139 (192)
135 2wfh_A SLIT homolog 2 protein 99.4 7.2E-13 2.5E-17 112.9 12.7 102 117-218 32-136 (193)
136 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 109.7 13.2 109 234-368 15-125 (174)
137 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 108.7 12.9 110 233-368 11-122 (170)
138 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.7E-19 124.9 -1.6 114 176-291 39-154 (198)
139 4fdw_A Leucine rich hypothetic 99.4 5.3E-12 1.8E-16 119.9 16.4 241 112-365 109-362 (401)
140 2o6r_A Variable lymphocyte rec 99.4 7.9E-12 2.7E-16 104.9 13.6 125 166-292 11-139 (177)
141 3un9_A NLR family member X1; l 99.2 9.5E-13 3.2E-17 123.8 1.1 181 161-361 71-283 (372)
142 2r9u_A Variable lymphocyte rec 99.2 6.5E-11 2.2E-15 98.8 11.4 103 93-200 15-120 (174)
143 3un9_A NLR family member X1; l 99.2 1.5E-12 5E-17 122.5 1.1 155 138-292 71-254 (372)
144 3g39_A Variable lymphocyte rec 99.2 7.8E-11 2.7E-15 98.0 10.7 101 93-198 12-115 (170)
145 2ifg_A High affinity nerve gro 99.1 1.7E-10 6E-15 107.6 10.8 106 235-365 12-120 (347)
146 4fs7_A Uncharacterized protein 99.1 1.8E-09 6.2E-14 102.5 15.5 259 86-358 67-376 (394)
147 4gt6_A Cell surface protein; l 99.1 1.3E-08 4.5E-13 96.5 20.7 257 91-358 65-367 (394)
148 4fs7_A Uncharacterized protein 99.0 4.5E-09 1.5E-13 99.8 16.0 247 109-367 64-361 (394)
149 4gt6_A Cell surface protein; l 99.0 2.6E-08 8.9E-13 94.5 18.3 265 86-360 83-390 (394)
150 2ifg_A High affinity nerve gro 98.9 6.2E-09 2.1E-13 97.0 10.1 104 93-200 11-118 (347)
151 2ra8_A Uncharacterized protein 98.8 4.8E-09 1.6E-13 97.8 6.1 188 87-291 104-321 (362)
152 1io0_A Tropomodulin; LRR prote 98.8 2.2E-09 7.6E-14 90.4 2.6 88 274-361 62-164 (185)
153 2ra8_A Uncharacterized protein 98.7 7.5E-09 2.6E-13 96.5 3.7 39 323-361 277-320 (362)
154 4h09_A Hypothetical leucine ri 98.6 2.8E-06 9.4E-11 80.0 19.4 255 88-357 44-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 3.9E-08 1.3E-12 82.7 5.1 112 87-198 33-164 (185)
156 4h09_A Hypothetical leucine ri 98.5 7.2E-06 2.5E-10 77.1 19.6 249 86-350 65-358 (379)
157 3e4g_A ATP synthase subunit S, 98.1 2.6E-06 8.7E-11 70.0 5.0 81 255-359 62-150 (176)
158 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 9E-11 69.9 3.3 86 230-339 60-154 (176)
159 3rw6_A Nuclear RNA export fact 98.0 8.8E-06 3E-10 71.9 6.8 79 113-192 167-258 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.9E-06 6.5E-11 76.2 2.2 93 121-214 148-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 5.4E-06 1.9E-10 69.4 3.2 111 229-359 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 7.6E-05 2.6E-09 62.4 5.7 65 224-288 63-137 (197)
163 3rfe_A Platelet glycoprotein I 97.5 0.00017 5.9E-09 56.3 6.0 42 325-366 31-73 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0049 1.7E-07 47.9 5.3 54 235-290 12-68 (130)
165 2lz0_A Uncharacterized protein 54.2 14 0.00049 26.4 4.0 38 110-148 14-52 (100)
166 2lz0_A Uncharacterized protein 38.9 33 0.0011 24.5 3.9 45 127-172 7-53 (100)
167 4ggd_C Mitotic checkpoint seri 24.7 17 0.00059 17.9 0.1 7 2-8 2-8 (26)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-33 Score=283.71 Aligned_cols=319 Identities=20% Similarity=0.302 Sum_probs=245.6
Q ss_pred hhhHHHHHHhcccccccCccceeeecccCCC---CCcc-chH----HhhhhhhhccCCCCCcEEEcCCcccccccccch-
Q 014624 40 LLTDFLILQLGSIIFRNKVPIMIMCMCCVGQ---DGEK-LSL----IKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPD- 110 (421)
Q Consensus 40 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~- 110 (421)
++++|+.|++++|.+.+.+|..+..+..+.. ..-. +.- ..+..+.....+++|++|++++|.+. .+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCch
Confidence 7788888888888888888866554443322 1111 111 11112222234478888888888766 3466
Q ss_pred -hhcCCCCCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCCCCchhhhCCCC-CcEEECcCCCCCCCchhhcCCC--
Q 014624 111 -SIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQISALPVALSRLV-- 185 (421)
Q Consensus 111 -~~~~~~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~l~~~~l~~l~~~~~~~~-- 185 (421)
.+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+....
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 7888888888888888888 777 788888888888888888888888888888 9999999988888887665544
Q ss_pred CCCEEECCCCCCCC-CccccC-------CCccccccccccccCCCCcchh-cCCcCccEEEcccCCCCCchhhhhc----
Q 014624 186 RLEELDLGSNNLSS-LPDSIG-------SLISLKKLIVETNDLEELPHTI-GQCSSLRELRVDYNRLKALPEAVGK---- 252 (421)
Q Consensus 186 ~L~~L~l~~~~l~~-~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~l~~---- 252 (421)
+|+.|++++|.+.. .|..+. .+++|+.|++++|.++.++..+ ..+++|+.|++++|+++.+|.....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 78899999888874 455555 6778999999999988887654 4588999999999999877754332
Q ss_pred ----cCCCCeeecccccCCcCCcccC--CCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCc-----cCCCccchhh
Q 014624 253 ----IHTLEVLSVRYNNIKQLPTTMS--SLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF-----ADLRALPRSI 321 (421)
Q Consensus 253 ----~~~L~~L~l~~n~l~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~ 321 (421)
+++|+.|++++|.++.+|..+. .+++|++|++++|+++.+|..+..+++|+.|++++|. .....+|..+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 2289999999999999988776 8999999999999999998889999999999996542 1346778888
Q ss_pred cCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 322 GNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 322 ~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
..+++|+.|+|++|.++.+|..+. ++|+.|++++|++.+..
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 899999999999999999988655 79999999999987654
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-32 Score=283.42 Aligned_cols=319 Identities=20% Similarity=0.295 Sum_probs=245.8
Q ss_pred hhhHHHHHHhcccccccCccceeeecccCCC---CCcc-chH----Hhhhhhh-hccCCCCCcEEEcCCcccccccccch
Q 014624 40 LLTDFLILQLGSIIFRNKVPIMIMCMCCVGQ---DGEK-LSL----IKLASLI-EVSSKKGTRDLNLQNKLMDNIEWLPD 110 (421)
Q Consensus 40 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~----~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~l~~ 110 (421)
.+++|+.|++++|.+.+.+|..+..+..+.. ..-. +.. ..+..+. ....+++|++|++++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCC
Confidence 7788888888888888888876555444322 1111 111 1122222 3445668888888888776 3566
Q ss_pred --hhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCC-CcEEECcCCCCCCCchhhcCCC--
Q 014624 111 --SIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLS-LVYLDLRGNQISALPVALSRLV-- 185 (421)
Q Consensus 111 --~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~l~~~~l~~l~~~~~~~~-- 185 (421)
.+.++++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+...+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 7888888889999888888777 788888888889988888888888888888 8899998888888887665554
Q ss_pred CCCEEECCCCCCCCCcccc----C--CCccccccccccccCCCCcchhc-CCcCccEEEcccCCCCCchhhhhc------
Q 014624 186 RLEELDLGSNNLSSLPDSI----G--SLISLKKLIVETNDLEELPHTIG-QCSSLRELRVDYNRLKALPEAVGK------ 252 (421)
Q Consensus 186 ~L~~L~l~~~~l~~~~~~~----~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~l~~------ 252 (421)
+|+.|++++|.+...+..+ . .+++|+.|++++|.+..+|..+. .+++|+.|++++|+++.+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 4888899888886432222 2 34578999999999888876654 788999999999999888765433
Q ss_pred --cCCCCeeecccccCCcCCcccC--CCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCc-----cCCCccchhhcC
Q 014624 253 --IHTLEVLSVRYNNIKQLPTTMS--SLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF-----ADLRALPRSIGN 323 (421)
Q Consensus 253 --~~~L~~L~l~~n~l~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~ 323 (421)
+++|+.|++++|.++.+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|++++|. .....+|..+..
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 2389999999999999988876 8999999999999999988888899999999998742 124577888889
Q ss_pred CCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 324 LEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 324 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
+++|+.|+|++|.++.+|..+. ++|+.|++++|++....
T Consensus 805 L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 805 CPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccC
Confidence 9999999999999998988654 69999999999987654
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.1e-31 Score=249.33 Aligned_cols=261 Identities=22% Similarity=0.358 Sum_probs=122.1
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 168 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 168 (421)
+++|++|++++|.+.++. . +..+++|++|++++|.+..++ .+.++++|++|++++|.+..++. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~---~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS---P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccch---h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 445555555555444332 1 445555555555555554442 34455555555555555554433 44455555555
Q ss_pred CcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchh
Q 014624 169 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE 248 (421)
Q Consensus 169 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 248 (421)
+++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.+++++|.++.++.
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch
Confidence 5555322222234445555555555555444433 4444555555555555444432 4444455555555554444432
Q ss_pred hhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCc
Q 014624 249 AVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLE 328 (421)
Q Consensus 249 ~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 328 (421)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.+ ..+..+++|+.|++++| .+..+ ..+..+++|+
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~ 290 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSN--QISDI-SVLNNLSQLN 290 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS--CCCCC-GGGGGCTTCS
T ss_pred -hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCC--ccCCC-hhhcCCCCCC
Confidence 3444455555555554444433 44445555555555544443 23444445555555544 22222 2244444555
Q ss_pred EEeCccCCCCccc-hhhcCCCCCCEEEccCCCCCCC
Q 014624 329 ELDISNNQIRVLP-DSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 329 ~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
.|++++|.++..+ ..+..+++|+.|++++|+++..
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 5555555444322 3344445555555555554443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-32 Score=282.49 Aligned_cols=325 Identities=17% Similarity=0.234 Sum_probs=236.3
Q ss_pred ccchhHHHhhhhHHHHHHhcccccccC-----------------ccceee--ecccCCCCCccchHH--hh-hhh-hhcc
Q 014624 31 IPLFSSFCLLLTDFLILQLGSIIFRNK-----------------VPIMIM--CMCCVGQDGEKLSLI--KL-ASL-IEVS 87 (421)
Q Consensus 31 ~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~--~~-~~~-~~~~ 87 (421)
+|.. +.++++|+.|+++++.+.+. +|..+. .+..+.. +.+. .+ ..+ ..+.
T Consensus 440 IP~~---l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~----L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKA---IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD----VELYNCPNMTQLPDFLY 512 (876)
T ss_dssp ECGG---GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE----EEEESCTTCCSCCGGGG
T ss_pred hhHH---HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE----EECcCCCCCccChHHHh
Confidence 6654 78899999999999999993 666554 3332111 1110 00 011 1345
Q ss_pred CCCCCcEEEcCCcc-cccccccchhhc-------CCCCCCEEEccCCcCCcCch--hhcCCCCCcEEEccCCCCCCCchh
Q 014624 88 SKKGTRDLNLQNKL-MDNIEWLPDSIG-------KLSSLVSLDLSENRIVAVPA--TIGGLSSLKKLDLHANRIIELPDS 157 (421)
Q Consensus 88 ~~~~L~~L~l~~~~-~~~~~~l~~~~~-------~~~~L~~L~l~~~~l~~~~~--~l~~l~~L~~L~L~~~~i~~l~~~ 157 (421)
.+++|++|++++|. +.+ ..+|..+. .+++|++|++++|.+..+|. .+.++++|++|++++|.++.+| .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C
T ss_pred CCCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h
Confidence 66777777777765 432 01233333 33477777777777777776 7777777777777777777776 6
Q ss_pred hhCCCCCcEEECcCCCCCCCchhhcCCCC-CCEEECCCCCCCCCccccCCCcc--ccccccccccCCCCcc----hhc--
Q 014624 158 IGDLLSLVYLDLRGNQISALPVALSRLVR-LEELDLGSNNLSSLPDSIGSLIS--LKKLIVETNDLEELPH----TIG-- 228 (421)
Q Consensus 158 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~l~~--L~~L~l~~n~~~~~~~----~~~-- 228 (421)
+..+++|+.|++++|.++.+|..+..+++ |+.|++++|.+..+|..+...+. |+.|++++|.+..... .+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 77777777777777777777777777777 78888887777777766655543 7778887777754322 122
Q ss_pred CCcCccEEEcccCCCCCchhhh-hccCCCCeeecccccCCcCCcccCC--------CCCCcEEECcCCCCCCCchhhh--
Q 014624 229 QCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTTMSS--------LSSLRELDVSFNELESVPESLC-- 297 (421)
Q Consensus 229 ~~~~L~~L~l~~~~l~~~~~~l-~~~~~L~~L~l~~n~l~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~~-- 297 (421)
.+++|+.|++++|+++.+|..+ ..+++|+.|++++|.++.+|..+.. +++|+.|+|++|+++.+|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 3457899999999999888665 4788999999999999988764433 2389999999999999998887
Q ss_pred ccCcccEEEccCCccCCCccchhhcCCCCCcEEeCcc------CCCC-ccchhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 298 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISN------NQIR-VLPDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
.+++|+.|++++|. +..+|..+..+++|+.|+|++ |.+. .+|..+..+++|+.|++++|++..+|..
T Consensus 751 ~l~~L~~L~Ls~N~--L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 751 TLPYLSNMDVSYNC--FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp TCTTCCEEECCSSC--CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred cCCCcCEEEeCCCC--CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence 89999999999994 455888889999999999976 5554 6788899999999999999999777654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.6e-33 Score=281.29 Aligned_cols=325 Identities=16% Similarity=0.265 Sum_probs=254.2
Q ss_pred ccchhHHHhhhhHHHHHHhcccccccC-----------------ccceee--ecccCCCCCccchHHh--h-hhh-hhcc
Q 014624 31 IPLFSSFCLLLTDFLILQLGSIIFRNK-----------------VPIMIM--CMCCVGQDGEKLSLIK--L-ASL-IEVS 87 (421)
Q Consensus 31 ~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~~~--~-~~~-~~~~ 87 (421)
+|.. ++++++|+.|+++++.+.+. +|+.+. .+..+.. +.+.. + ..+ ..+.
T Consensus 198 ip~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~----L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKA---VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD----VEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGG---GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE----EEEECCTTCSSCCTTTT
T ss_pred CCHH---HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE----EEecCCcCCccChHHHh
Confidence 7765 78899999999999999996 777665 4433211 11110 0 011 2345
Q ss_pred CCCCCcEEEcCCcc-cccccccchhhcCC------CCCCEEEccCCcCCcCch--hhcCCCCCcEEEccCCCCC-CCchh
Q 014624 88 SKKGTRDLNLQNKL-MDNIEWLPDSIGKL------SSLVSLDLSENRIVAVPA--TIGGLSSLKKLDLHANRII-ELPDS 157 (421)
Q Consensus 88 ~~~~L~~L~l~~~~-~~~~~~l~~~~~~~------~~L~~L~l~~~~l~~~~~--~l~~l~~L~~L~L~~~~i~-~l~~~ 157 (421)
.+++|++|++++|. +.+ ..+|..+..+ ++|++|++++|.++.+|. .+.++++|++|++++|.++ .+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 67788888888876 443 0235556554 888888888888888877 7888888888888888888 777 7
Q ss_pred hhCCCCCcEEECcCCCCCCCchhhcCCCC-CCEEECCCCCCCCCccccCCCc--cccccccccccCCC-Ccchhc-----
Q 014624 158 IGDLLSLVYLDLRGNQISALPVALSRLVR-LEELDLGSNNLSSLPDSIGSLI--SLKKLIVETNDLEE-LPHTIG----- 228 (421)
Q Consensus 158 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~l~--~L~~L~l~~n~~~~-~~~~~~----- 228 (421)
+..+++|++|++++|.++.+|..+..+++ |+.|++++|.+..+|..+.... +|+.|++++|.+.. .|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 77888888888888888888888888888 9999999998888887766654 88999999998875 344555
Q ss_pred --CCcCccEEEcccCCCCCchhhh-hccCCCCeeecccccCCcCCcccCC--------CCCCcEEECcCCCCCCCchhhh
Q 014624 229 --QCSSLRELRVDYNRLKALPEAV-GKIHTLEVLSVRYNNIKQLPTTMSS--------LSSLRELDVSFNELESVPESLC 297 (421)
Q Consensus 229 --~~~~L~~L~l~~~~l~~~~~~l-~~~~~L~~L~l~~n~l~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~~ 297 (421)
.+++|+.|++++|+++.+|..+ ..+++|+.|++++|.++.+|..... +++|++|++++|.++.+|..+.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 6778999999999999888654 4589999999999999988754322 2389999999999999998887
Q ss_pred --ccCcccEEEccCCccCCCccchhhcCCCCCcEEeCc------cCCCC-ccchhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 298 --FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDIS------NNQIR-VLPDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 298 --~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~------~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
.+++|+.|++++|. +..+|..+..+++|+.|+|+ +|.+. .+|..+..+++|+.|++++|+++.+|..
T Consensus 509 ~~~l~~L~~L~Ls~N~--l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNS--FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp TTTCTTCCEEECCSSC--CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred hccCCCcCEEECCCCC--CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 89999999999994 44588899999999999995 45554 7888999999999999999999877654
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=255.52 Aligned_cols=263 Identities=20% Similarity=0.254 Sum_probs=205.1
Q ss_pred cCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCc-hhhhCCCCC
Q 014624 87 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSL 164 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L 164 (421)
..+++|++|++++|.+..+. +..+..+++|++|++++|.+..++. .|.++++|++|++++|.+..++ ..+..+++|
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred cCCCCcCEEECCCCCCCcCC--HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 45567777777777665543 4556677777777777777776654 3466777777777777776553 346667777
Q ss_pred cEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCC
Q 014624 165 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~ 244 (421)
++|++++|.++.++ +..+++|+.|++++|.+..++ ..+.|++|++++|.+..++.. ..++|+.|++++|.++
T Consensus 168 ~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 168 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp CEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCC
T ss_pred CEEECCCCcCCccc--cccccccceeecccccccccC----CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCc
Confidence 77777777776653 445677777777777665432 335688888888888766443 3578999999999999
Q ss_pred CchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcC
Q 014624 245 ALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGN 323 (421)
Q Consensus 245 ~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 323 (421)
.. ..+..+++|++|++++|.++.+ +..+..+++|++|++++|+++.++.....+++|+.|++++| .+..+|..+..
T Consensus 240 ~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~ 316 (390)
T 3o6n_A 240 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQ 316 (390)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHH
T ss_pred cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC--cceecCccccc
Confidence 87 4678899999999999999985 67899999999999999999998888888999999999999 56688888888
Q ss_pred CCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 324 LEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 324 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
+++|+.|++++|.++.++ +..+++|+.|++++|++++.+
T Consensus 317 l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp HTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred cCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 999999999999999886 678899999999999998754
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.2e-30 Score=241.55 Aligned_cols=306 Identities=19% Similarity=0.298 Sum_probs=230.3
Q ss_pred hhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCC
Q 014624 39 LLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSL 118 (421)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 118 (421)
..+++|+.|+++++.+.. ++. +..+... +.-.+....+..+..+..+++|++|++++|.+..+. .+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~~-~~~~~~L--~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQG-IEYLTNL--EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS----ALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CTT-GGGCTTC--CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGTTCTTC
T ss_pred hhcccccEEEEeCCcccc-chh-hhhcCCc--cEEEccCCccccchhhhcCCcCCEEEccCCcccCch----HHcCCCcC
Confidence 466778888888877654 232 1111111 000011112222333667788999999988776643 57788899
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLS 198 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~ 198 (421)
++|++++|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..++. +..+++|+.|++++|.+.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 999999998888765 788889999999888554334557888899999999988887765 778888999999999888
Q ss_pred CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCC
Q 014624 199 SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSS 278 (421)
Q Consensus 199 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~ 278 (421)
.++. +..+++|+.+++++|.+..++. +..+++|+.|++++|+++.++. +..+++|++|++++|.++.+ ..+..+++
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~ 266 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTK 266 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTT
T ss_pred cccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCC
Confidence 7765 7788888999998888887754 7788889999999998888766 77888899999999988887 46788889
Q ss_pred CcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCC
Q 014624 279 LRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQEN 358 (421)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n 358 (421)
|++|++++|.++.+ ..+..+++|+.|++++|... ...+..+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 267 L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 267 LKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred cCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhh
Confidence 99999999988877 45778888999999888532 3455677888899999999998888776 788889999999998
Q ss_pred CCC
Q 014624 359 PLE 361 (421)
Q Consensus 359 ~~~ 361 (421)
+++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 875
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.5e-31 Score=258.22 Aligned_cols=317 Identities=21% Similarity=0.237 Sum_probs=195.6
Q ss_pred hHHHHHHhcccccccCccceeeecccCCCCCccchHHh--hh-h--hhhccCCCCCcEEEcCCcccccccccchhhcCCC
Q 014624 42 TDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIK--LA-S--LIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLS 116 (421)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 116 (421)
++|++|+++++.+.+..|..+..+..+.. +.+.. .. . ...+..+++|++|++++|.+..+. |..+.+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~----L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQF----LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--TGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCE----EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--TTTTTTCT
T ss_pred CccCEEEecCCccCcCChhHhccCccccE----EECcCCcccceECcccccccccCCEEeCCCCccCccC--hhhccCcc
Confidence 57888999999887765643322221110 00000 00 0 011233444444444444443322 33444444
Q ss_pred CCCEEEccCCcCCcC-ch--hhcCCCCCcEEEccCCCCCCC-chh-hhCCCCCcEEECcCCCCCCC-chhhcCC--CCCC
Q 014624 117 SLVSLDLSENRIVAV-PA--TIGGLSSLKKLDLHANRIIEL-PDS-IGDLLSLVYLDLRGNQISAL-PVALSRL--VRLE 188 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~-~~--~l~~l~~L~~L~L~~~~i~~l-~~~-~~~l~~L~~L~l~~~~l~~l-~~~~~~~--~~L~ 188 (421)
+|++|++++|.+... +. .+.++++|++|++++|.++.+ |.. +..+++|++|++++|.++.+ +..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 444454444444431 11 144444444555544444433 222 44444455555544444432 1122211 2344
Q ss_pred EEECCCCCCCCCccc---------cCCCccccccccccccCCCC-cchh-------------------------------
Q 014624 189 ELDLGSNNLSSLPDS---------IGSLISLKKLIVETNDLEEL-PHTI------------------------------- 227 (421)
Q Consensus 189 ~L~l~~~~l~~~~~~---------~~~l~~L~~L~l~~n~~~~~-~~~~------------------------------- 227 (421)
.|++++|.+..++.. +..+++|++|++++|.+... +..+
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 444444433332211 22346777788877766421 1111
Q ss_pred --------cCCcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCC-chhh
Q 014624 228 --------GQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESV-PESL 296 (421)
Q Consensus 228 --------~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~-~~~~ 296 (421)
...++|+.|++++|.++.+ +..+..+++|+.|++++|.++.+ +..+.++++|++|++++|.++.+ +..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 0125788999999988854 56788899999999999999986 56899999999999999999976 5678
Q ss_pred hccCcccEEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 297 CFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
..+++|+.|++++|. +..+ |..+..+++|++|++++|+++.+|. .+..+++|+.|++++|++++.++.
T Consensus 344 ~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ENLDKLEVLDLSYNH--IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCcccCCEEECCCCc--ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 889999999999995 3444 6788999999999999999999886 568999999999999999998864
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.2e-32 Score=278.75 Aligned_cols=270 Identities=27% Similarity=0.425 Sum_probs=206.3
Q ss_pred CCcEEEcCCcccccccccchhhcC--CCCCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCCCCCcE
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGK--LSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVY 166 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~ 166 (421)
+|++|++++|.+.+. ++..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus 369 ~L~~L~Ls~N~l~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGP--ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TCSEEECCSSEEEEE--CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCcEEEccCCCcCCC--cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 455555555444331 1333333 566777777777666 45667777788888888887776 55667777788888
Q ss_pred EECcCCCCC-CCchhhcCCCCCCEEECCCCCCC-CCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcccCCC
Q 014624 167 LDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 167 L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~~l 243 (421)
|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 888888777 56777777788888888888777 56677777788888888888777 5667777788888888888877
Q ss_pred C-CchhhhhccCCCCeeecccccCCc-CC---------------------------------------------------
Q 014624 244 K-ALPEAVGKIHTLEVLSVRYNNIKQ-LP--------------------------------------------------- 270 (421)
Q Consensus 244 ~-~~~~~l~~~~~L~~L~l~~n~l~~-l~--------------------------------------------------- 270 (421)
+ .+|..+..+++|+.|++++|.++. +|
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 7 666777778888888888776652 33
Q ss_pred -------------------cccCCCCCCcEEECcCCCCC-CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEE
Q 014624 271 -------------------TTMSSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEEL 330 (421)
Q Consensus 271 -------------------~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 330 (421)
..+..+++|+.|++++|+++ .+|..++.++.|+.|++++|... ..+|..++.+++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEE
Confidence 23445678999999999998 78889999999999999999633 6889999999999999
Q ss_pred eCccCCCC-ccchhhcCCCCCCEEEccCCCCCCC
Q 014624 331 DISNNQIR-VLPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 331 ~L~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
+|++|+++ .+|..+..++.|++|++++|+++..
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999 7889999999999999999998643
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=6.3e-31 Score=265.65 Aligned_cols=184 Identities=20% Similarity=0.184 Sum_probs=140.3
Q ss_pred cCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCc--chhcCCcCccEEEcccCCCCC-chhhhhccCCCCe
Q 014624 182 SRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELP--HTIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEV 258 (421)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~~~l~~-~~~~l~~~~~L~~ 258 (421)
..+++|+.|++++|.+..+|..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.++. .+..+..+++|++
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 3344444444444444444445556666666666666666543 356677788888888888774 4566778888999
Q ss_pred eecccccCCc--CCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccC
Q 014624 259 LSVRYNNIKQ--LPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN 335 (421)
Q Consensus 259 L~l~~n~l~~--l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n 335 (421)
|++++|.+++ +|..+..+++|++|++++|.++.+ +..+..+++|+.|++++|... ...|..+..+++|+.|+|++|
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CEEGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-CcCHHHccCCCcCCEEECCCC
Confidence 9999888876 577888999999999999998865 456888999999999999432 344788899999999999999
Q ss_pred CCCccchhhcCCC-CCCEEEccCCCCCCCcHH
Q 014624 336 QIRVLPDSFRMLS-RLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 336 ~l~~l~~~~~~l~-~L~~L~l~~n~~~~~~~~ 366 (421)
+++.+|..+..++ +|+.|++++|++.|.|..
T Consensus 532 ~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999998888887 599999999999998753
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=257.71 Aligned_cols=158 Identities=24% Similarity=0.406 Sum_probs=134.5
Q ss_pred CCCccccccccccccCCC-CcchhcCCcCccEEEcccCCCCCc---hhhhhccCCCCeeecccccCCc-CCc-ccCCCCC
Q 014624 205 GSLISLKKLIVETNDLEE-LPHTIGQCSSLRELRVDYNRLKAL---PEAVGKIHTLEVLSVRYNNIKQ-LPT-TMSSLSS 278 (421)
Q Consensus 205 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~L~l~~~~l~~~---~~~l~~~~~L~~L~l~~n~l~~-l~~-~l~~~~~ 278 (421)
..+++|++|++++|.++. .+..+..+++|+.|++++|+++.+ |..+..+++|++|++++|.++. +|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567888899999998886 567788899999999999999854 3567888999999999999988 775 4788899
Q ss_pred CcEEECcCCCCCC-CchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchh-hcCCCCCCEEEcc
Q 014624 279 LRELDVSFNELES-VPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQ 356 (421)
Q Consensus 279 L~~L~L~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~ 356 (421)
|++|++++|+++. ++..+ .++|+.|++++| .+..+|..+..+++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC--CTTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhh--cccCCEEECCCC--cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 9999999999863 33333 279999999999 5568998888999999999999999999985 8899999999999
Q ss_pred CCCCCCCcHH
Q 014624 357 ENPLEVPPRN 366 (421)
Q Consensus 357 ~n~~~~~~~~ 366 (421)
+|++.|.|..
T Consensus 477 ~N~~~c~c~~ 486 (520)
T 2z7x_B 477 TNPWDCSCPR 486 (520)
T ss_dssp SSCBCCCHHH
T ss_pred CCCCcccCCc
Confidence 9999998863
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=255.74 Aligned_cols=278 Identities=26% Similarity=0.363 Sum_probs=224.7
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCC-chhhhCCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLS 163 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~ 163 (421)
+..+++|++|++++|.+..+. |..|.++++|++|++++|.+..++. .|.++++|++|++++|.+..+ +..+..+++
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 445678888888888776654 5678888888888888888887754 577888888888888888754 456778888
Q ss_pred CcEEECcCCCCCCC-chhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCc-chhcCCcCccEEEccc
Q 014624 164 LVYLDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDY 240 (421)
Q Consensus 164 L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~ 240 (421)
|++|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ ..+..+++|+.|++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 88888888888765 346778888888888888888775 34778888888888888877553 3577788888998888
Q ss_pred CCCC-CchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCcc
Q 014624 241 NRLK-ALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRAL 317 (421)
Q Consensus 241 ~~l~-~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 317 (421)
|... .++.......+|+.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|... ...
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 288 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVE 288 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS-EEC
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc-eEC
Confidence 7644 55555555568999999999999987 478999999999999999997654 5788999999999999433 233
Q ss_pred chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 318 PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 318 ~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|++.|.|..
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 6678899999999999999998886 578899999999999999998864
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.1e-31 Score=272.21 Aligned_cols=277 Identities=27% Similarity=0.488 Sum_probs=210.4
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCC-CCCEEEccCCcCCc-CchhhcC--CCCCcEEEccCCCCC-CCchhhhCCC
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLS-SLVSLDLSENRIVA-VPATIGG--LSSLKKLDLHANRII-ELPDSIGDLL 162 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~l~~-~~~~l~~--l~~L~~L~L~~~~i~-~l~~~~~~l~ 162 (421)
.+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+.. ++..+.. +++|++|++++|.++ .+|..+..++
T Consensus 341 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred cCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 34445555555544432 2234444444 55555555555442 2333333 567777777777776 5677788888
Q ss_pred CCcEEECcCCCCC-CCchhhcCCCCCCEEECCCCCCC-CCccccCCCccccccccccccCC-CCcchhcCCcCccEEEcc
Q 014624 163 SLVYLDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLE-ELPHTIGQCSSLRELRVD 239 (421)
Q Consensus 163 ~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~ 239 (421)
+|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 9999999988887 56778888889999999999888 67778888889999999999888 567788888999999999
Q ss_pred cCCCC-CchhhhhccCCCCeeecccccCCc-CCcccCCCCCCcEEECcCCCCC-CCchhh--------------------
Q 014624 240 YNRLK-ALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE-SVPESL-------------------- 296 (421)
Q Consensus 240 ~~~l~-~~~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~-~~~~~~-------------------- 296 (421)
+|+++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 99988 677888889999999999998885 7888889999999999998776 444332
Q ss_pred --------------------------------------------------hccCcccEEEccCCccCCCccchhhcCCCC
Q 014624 297 --------------------------------------------------CFATTLVKMNIGNNFADLRALPRSIGNLEM 326 (421)
Q Consensus 297 --------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 326 (421)
..+++|+.|++++|... ..+|..++.+++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~ 657 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPY 657 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGGGGGCTT
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHHHhcccc
Confidence 22467888999988533 578889999999
Q ss_pred CcEEeCccCCCC-ccchhhcCCCCCCEEEccCCCCC-CCcHHH
Q 014624 327 LEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE-VPPRNI 367 (421)
Q Consensus 327 L~~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 367 (421)
|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 999999999998 78999999999999999999997 444443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-30 Score=260.51 Aligned_cols=263 Identities=20% Similarity=0.260 Sum_probs=192.7
Q ss_pred cCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCch-hhhCCCCC
Q 014624 87 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSL 164 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L 164 (421)
..+++|++|++++|.+..+. +..++.+++|++|++++|.+..+|. .|.++++|++|++++|.++.++. .+..+++|
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCCCC--HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 34456666666666555433 3445566666666666666665543 34566666666666666654432 45566666
Q ss_pred cEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCC
Q 014624 165 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~ 244 (421)
++|++++|.++.++ +..+++|+.|++++|.+..+ ...++|+.|++++|.+..++..+ .++|+.|++++|.++
T Consensus 174 ~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 174 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT 245 (597)
T ss_dssp CEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC
T ss_pred cEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC
Confidence 66666666665543 34455666666666655433 23346777777777777554432 368999999999998
Q ss_pred CchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcC
Q 014624 245 ALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGN 323 (421)
Q Consensus 245 ~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 323 (421)
.. ..+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|.++.++.....+++|+.|++++| .+..+|..+..
T Consensus 246 ~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~ 322 (597)
T 3oja_B 246 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQ 322 (597)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHH
T ss_pred CC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCCccCccccc
Confidence 76 5678899999999999999985 67899999999999999999998888888999999999999 45588888889
Q ss_pred CCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 324 LEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 324 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
+++|+.|+|++|.++.++ +..+++|+.|++++|++.|.+
T Consensus 323 l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 999999999999999886 678899999999999998654
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.3e-29 Score=247.71 Aligned_cols=308 Identities=23% Similarity=0.376 Sum_probs=189.9
Q ss_pred HhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCC
Q 014624 38 CLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSS 117 (421)
Q Consensus 38 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 117 (421)
+..+++|+.|+++++.+.+..+ +..+..+.. -.+....+.....+..+++|++|++++|.+..+. .+..+++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~--L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~ 135 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVD--ILMNNNQIADITPLANLTNLTGLTLFNNQITDID----PLKNLTN 135 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE--EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGTTCTT
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCE--EECCCCccccChhhcCCCCCCEEECCCCCCCCCh----HHcCCCC
Confidence 4567788888888887766433 211111100 0001111122223556677777777777665543 2667777
Q ss_pred CCEEEccCCcCCcCch--------------------hhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 014624 118 LVSLDLSENRIVAVPA--------------------TIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISAL 177 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~--------------------~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l 177 (421)
|++|++++|.+..++. .+.++++|++|++++|.+..++ .+..+++|++|++++|.++.+
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccc
Confidence 7777777776655432 2445555666666666555542 355566666666666666554
Q ss_pred chhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCC
Q 014624 178 PVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLE 257 (421)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~ 257 (421)
+. +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+...+. +..+++|+.|++++|.++.++. +..+++|+
T Consensus 215 ~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 290 (466)
T 1o6v_A 215 TP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALT 290 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred cc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccC
Confidence 33 455666666666666666553 35566666777777666665543 5666677777777777766654 56667777
Q ss_pred eeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCC
Q 014624 258 VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI 337 (421)
Q Consensus 258 ~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 337 (421)
.|++++|.++.++. +..+++|+.|++++|.+++++. +..+++|+.|++++|. +..+ ..+..+++|+.|++++|++
T Consensus 291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 291 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK--VSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC--CCCC-GGGTTCTTCCEEECCSSCC
T ss_pred eEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc--cCCc-hhhccCCCCCEEeCCCCcc
Confidence 77777777766544 5667777777777777766544 5667777777777773 3333 3566777777777777777
Q ss_pred CccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 338 RVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 338 ~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
+.++. +..+++|+.|++++|+++..|
T Consensus 366 ~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 366 SDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred Cccch-hhcCCCCCEEeccCCcccCCc
Confidence 76655 677777777777777776654
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=254.12 Aligned_cols=272 Identities=24% Similarity=0.339 Sum_probs=185.6
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCc--hhhhCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP--DSIGDLL 162 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~--~~~~~l~ 162 (421)
.+..+++|++|++++|.+..+. |..+..+++|++|++++|.++.+|.. .+++|++|++++|.++.++ ..+..++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD--FHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCC--HHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 3456677888888877766543 56677777888888888877777655 6777888888877777543 5677777
Q ss_pred CCcEEECcCCCCCCCchhhcCCC---------------------------------------------------------
Q 014624 163 SLVYLDLRGNQISALPVALSRLV--------------------------------------------------------- 185 (421)
Q Consensus 163 ~L~~L~l~~~~l~~l~~~~~~~~--------------------------------------------------------- 185 (421)
+|++|++++|.++.. .+..++
T Consensus 147 ~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 147 KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 777777777766532 111122
Q ss_pred ----------------------------------------------------CCCEEECCCCCCC-CCcccc--------
Q 014624 186 ----------------------------------------------------RLEELDLGSNNLS-SLPDSI-------- 204 (421)
Q Consensus 186 ----------------------------------------------------~L~~L~l~~~~l~-~~~~~~-------- 204 (421)
+|++|++++|.+. .+|..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence 2333333333322 222221
Q ss_pred ---------------------------------------------CCCccccccccccccCCC-CcchhcCCcCccEEEc
Q 014624 205 ---------------------------------------------GSLISLKKLIVETNDLEE-LPHTIGQCSSLRELRV 238 (421)
Q Consensus 205 ---------------------------------------------~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~L~l 238 (421)
..+++|++|++++|.++. .+..+..+++|+.|++
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 344556666666666664 3455666677777777
Q ss_pred ccCCCCCch---hhhhccCCCCeeecccccCCc-CCc-ccCCCCCCcEEECcCCCCCC-CchhhhccCcccEEEccCCcc
Q 014624 239 DYNRLKALP---EAVGKIHTLEVLSVRYNNIKQ-LPT-TMSSLSSLRELDVSFNELES-VPESLCFATTLVKMNIGNNFA 312 (421)
Q Consensus 239 ~~~~l~~~~---~~l~~~~~L~~L~l~~n~l~~-l~~-~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~l~~~~~ 312 (421)
++|+++.++ ..+..+++|+.|++++|.++. +|. .+..+++|++|++++|+++. ++..+. ++|+.|++++|
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-- 460 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-- 460 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS--
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC--
Confidence 777766543 345666777777777777766 553 46666777777777777652 222221 68999999998
Q ss_pred CCCccchhhcCCCCCcEEeCccCCCCccchh-hcCCCCCCEEEccCCCCCCCcHH
Q 014624 313 DLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 313 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
.+..+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|++.|.|+.
T Consensus 461 ~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 5568888888999999999999999999986 89999999999999999998864
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.2e-30 Score=255.85 Aligned_cols=341 Identities=21% Similarity=0.292 Sum_probs=211.6
Q ss_pred CCCCccceeecccch-hHHHhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhh--hccCCCCCcEEE
Q 014624 20 LSNPVPFLVSFIPLF-SSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLI--EVSSKKGTRDLN 96 (421)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~ 96 (421)
.++.+..+.+.+... ...+..+++|++|+++++.+.+..|..+..+..+.. -.++...+.... .+..+++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH--LDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE--EECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE--EECCCCccCccCHHHhccCCCCcEEE
Confidence 444554444443222 122567788888888888887765543333222111 000000111111 245667788888
Q ss_pred cCCcccccccccchhhcCCCCCCEEEccCCc-CCcCc-hhhcCCCCCcEEEccCCCCCC-CchhhhC-------------
Q 014624 97 LQNKLMDNIEWLPDSIGKLSSLVSLDLSENR-IVAVP-ATIGGLSSLKKLDLHANRIIE-LPDSIGD------------- 160 (421)
Q Consensus 97 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~~-~~l~~l~~L~~L~L~~~~i~~-l~~~~~~------------- 160 (421)
+++|.+..+. ++..+.++++|++|++++|. +..++ ..+.++++|++|++++|.++. +|..+..
T Consensus 105 Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLG-VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSC-SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccc-hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 8877766542 24567777888888888776 45554 467778888888888877763 3444433
Q ss_pred -----------CCCCcEEECcCCCCCCCc---hh-----------------------------hc---------------
Q 014624 161 -----------LLSLVYLDLRGNQISALP---VA-----------------------------LS--------------- 182 (421)
Q Consensus 161 -----------l~~L~~L~l~~~~l~~l~---~~-----------------------------~~--------------- 182 (421)
+++|++|++++|.++.++ .. +.
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 445555555555443320 00 00
Q ss_pred --------------------------------------------CCCCCCEEECCCCCCCCCcccc-CCCcccccccccc
Q 014624 183 --------------------------------------------RLVRLEELDLGSNNLSSLPDSI-GSLISLKKLIVET 217 (421)
Q Consensus 183 --------------------------------------------~~~~L~~L~l~~~~l~~~~~~~-~~l~~L~~L~l~~ 217 (421)
..++|+.|++++|.+..+|..+ ..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 0112333333333333343332 2466677777777
Q ss_pred ccCCCC-c---chhcCCcCccEEEcccCCCCCch---hhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCC
Q 014624 218 NDLEEL-P---HTIGQCSSLRELRVDYNRLKALP---EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 218 n~~~~~-~---~~~~~~~~L~~L~l~~~~l~~~~---~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~ 290 (421)
|.+... + ..+..+++|+.|++++|+++.++ ..+..+++|++|++++|.++.+|..+..+++|++|++++|+++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 766532 1 22556777888888888887665 3467788888888888888888877777778888888887776
Q ss_pred CCchhh------------------hccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCC
Q 014624 291 SVPESL------------------CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLR 351 (421)
Q Consensus 291 ~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~ 351 (421)
.++..+ ..+++|+.|++++| .+..+|. ...+++|+.|+|++|+++.++. .+..+++|+
T Consensus 424 ~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 424 VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN--KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred cccchhcCCceEEECCCCChhhhcccCChhcEEECCCC--ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 554432 25677888888888 4446765 4568889999999999987765 588999999
Q ss_pred EEEccCCCCCCCcHH
Q 014624 352 VLRVQENPLEVPPRN 366 (421)
Q Consensus 352 ~L~l~~n~~~~~~~~ 366 (421)
.|++++|++.|.|+.
T Consensus 501 ~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 501 KIWLHTNPWDCSCPR 515 (549)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEEecCCCccCCCcc
Confidence 999999999988763
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=9.5e-30 Score=243.03 Aligned_cols=265 Identities=23% Similarity=0.283 Sum_probs=202.6
Q ss_pred cCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchh-hhCCCCC
Q 014624 87 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDS-IGDLLSL 164 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L 164 (421)
..+++|++|+++++.+..+. +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.++.+|.. +..+++|
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 34567777777777665543 34666777777777777777766 34567777777777777777766654 4667777
Q ss_pred cEEECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 165 VYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
++|++++|.++.++. .+..+++|+.|++++|.+..++ +..+++|+.+++++|.++.+ ...+.|+.|++++|.+
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI 217 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc----CCCCcceEEECCCCee
Confidence 777777777776543 4666777777777777776653 44566777777777766543 2345788888888888
Q ss_pred CCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCccchhhc
Q 014624 244 KALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPRSIG 322 (421)
Q Consensus 244 ~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (421)
+.++.. ..++|+.|++++|.++.. ..+..+++|++|++++|.++.+ +..+..+++|+.|++++| .+..++..+.
T Consensus 218 ~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~ 292 (390)
T 3o6n_A 218 NVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQ 292 (390)
T ss_dssp CEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS--CCCEEECSSS
T ss_pred eecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC--cCcccCcccC
Confidence 877543 347899999999999887 5788899999999999999866 678888999999999999 5667777778
Q ss_pred CCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 323 NLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
.+++|+.|++++|.++.+|..+..+++|+.|++++|+++..+
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 899999999999999999988899999999999999987664
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.3e-29 Score=256.12 Aligned_cols=312 Identities=19% Similarity=0.208 Sum_probs=173.1
Q ss_pred HHHHHHhcccccccCccceeeecccCCCCCccchHH--hhhhh--hhccCCCCCcEEEcCCcccccccccchhhcCCCCC
Q 014624 43 DFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLI--KLASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSL 118 (421)
Q Consensus 43 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 118 (421)
+++.|+++++.+.+..|..+..+..+.. +.+. .+..+ ..+..+++|++|++++|.+..+. |..+..+++|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~----L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTF----LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--ETALSGPKAL 107 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSE----EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC--TTTTSSCTTC
T ss_pred cCcEEEccCCccCcCChhHhccCccceE----EECCCCccceeChhhccCccccCeeeCCCCcccccC--hhhhcccccc
Confidence 5788888888887665543322222111 1000 01111 12344556666666666555432 4455666666
Q ss_pred CEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC-chhhcCCCCCC--EEECC
Q 014624 119 VSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLE--ELDLG 193 (421)
Q Consensus 119 ~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~--~L~l~ 193 (421)
++|++++|.+..+ +..+.++++|++|++++|.+..++ +.+..+++|++|++++|.++.+ +..+..+++|+ .|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 6666666666655 345566666666666666665432 2233366666666666666644 33456666666 66666
Q ss_pred CCCCCCCccccCCCc----------------------------------------------------cccccccccccCC
Q 014624 194 SNNLSSLPDSIGSLI----------------------------------------------------SLKKLIVETNDLE 221 (421)
Q Consensus 194 ~~~l~~~~~~~~~l~----------------------------------------------------~L~~L~l~~n~~~ 221 (421)
+|.+..++....... +++.|++++|.++
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 666554332222211 3444444455444
Q ss_pred CCcc-hhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCC-CCch-hhh
Q 014624 222 ELPH-TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELE-SVPE-SLC 297 (421)
Q Consensus 222 ~~~~-~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~-~~~~-~~~ 297 (421)
.++. .+..+++|+.|++++|+++.+|..+..+++|++|++++|.++.+ +..+..+++|++|++++|.+. .++. .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 4432 25555666666666666666665556666666666666666654 345566666666666666554 3332 355
Q ss_pred ccCcccEEEccCCccCCCcc---chhhcCCCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCC
Q 014624 298 FATTLVKMNIGNNFADLRAL---PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEV 362 (421)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~ 362 (421)
.+++|+.|++++|.. ... +..+..+++|++|++++|.++.+ +..+..+++|+.|++++|++..
T Consensus 348 ~l~~L~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 348 NLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp TCTTCCEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred ccCcCCEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 566666666666632 222 34566667777777777766644 3456667777777777776653
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2e-28 Score=239.26 Aligned_cols=265 Identities=23% Similarity=0.399 Sum_probs=154.9
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch---------
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD--------- 156 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~--------- 156 (421)
+..+++|++|++++|.+..+. . +..+++|++|++++|.+..++. +.++++|++|++++|.+..++.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT---P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccCh---h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccE
Confidence 344555555555555444432 1 5555666666666665555543 5556666666666555544321
Q ss_pred -----------hhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcc
Q 014624 157 -----------SIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH 225 (421)
Q Consensus 157 -----------~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 225 (421)
.+..+++|++|++++|.++.++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+ .
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~ 237 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G 237 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h
Confidence 1233344444444444444442 24444555555555555554432 44455555555555555554 2
Q ss_pred hhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEE
Q 014624 226 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKM 305 (421)
Q Consensus 226 ~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 305 (421)
.+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|++|++++|+++.++. +..+++|+.|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEE
T ss_pred hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEE
Confidence 35556666666666666665543 5566666666666666666544 6666777777777777766544 5667777777
Q ss_pred EccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcH
Q 014624 306 NIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
++++|. +..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|++....+
T Consensus 315 ~L~~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 315 TLYFNN--ISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ECCSSC--CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred ECcCCc--CCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence 777773 333333 566777777777777777764 46777788888888887766543
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=257.18 Aligned_cols=115 Identities=22% Similarity=0.371 Sum_probs=75.5
Q ss_pred hhccCCCCeeecccccCCc-CCcccCCCCCCcEEECcCCCCC--CCchhhhccCcccEEEccCCccCCCcc-chhhcCCC
Q 014624 250 VGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELE--SVPESLCFATTLVKMNIGNNFADLRAL-PRSIGNLE 325 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~ 325 (421)
+..+++|++|++++|.+.. .+..+.++++|++|++++|.+. .+|..+..+++|+.|++++|. +..+ |..+..++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc--cccCChhhhhccc
Confidence 3444455555555554444 2344555666666666666654 355566666777777777763 3333 56777788
Q ss_pred CCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 326 MLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 326 ~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+|++|++++|+++.++. .+..+++|+.|++++|++++.++.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88888888888887664 577888888888888888887754
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.9e-29 Score=254.80 Aligned_cols=182 Identities=24% Similarity=0.366 Sum_probs=83.1
Q ss_pred hcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCC-----------------
Q 014624 181 LSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNR----------------- 242 (421)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~----------------- 242 (421)
+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3444555555555555555555555555555555555554433 2233444444444444443
Q ss_pred --------CCCc---hhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCc--hhhhccCcccEEEcc
Q 014624 243 --------LKAL---PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVP--ESLCFATTLVKMNIG 308 (421)
Q Consensus 243 --------l~~~---~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~l~ 308 (421)
++.. +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.... ..+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 3322 22233334444444444443332 233444444444444444443221 123444445555554
Q ss_pred CCccCCCccchhhcCCCCCcEEeCccCCCCc--cc--hhhcCCCCCCEEEccCCCCCCC
Q 014624 309 NNFADLRALPRSIGNLEMLEELDISNNQIRV--LP--DSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--l~--~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
+|... ...+..+..+++|++|++++|.++. ++ ..+..+++|+.|++++|.++..
T Consensus 434 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 434 HSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp TCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 44221 2223344555555555555555543 11 3455555666666666655443
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.8e-29 Score=255.05 Aligned_cols=132 Identities=23% Similarity=0.251 Sum_probs=91.6
Q ss_pred hHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhh--hhccCCCCCcEEEcCCcccccccccchhhcCCCCCC
Q 014624 42 TDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASL--IEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLV 119 (421)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 119 (421)
++++.|+++++.+.+..+..+..+..+.. -.++...+..+ ..+..+++|++|++++|.+..+. |..+.++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~--L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQW--LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--PGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCE--EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC--TTSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcE--EeCCCCcccccCHHHhhchhhcCEeECCCCcccccC--hhhcCCcccCC
Confidence 57888999999887765543333222111 00000111122 12456778888888888776653 67788888888
Q ss_pred EEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCC--CCchhhhCCCCCcEEECcCCCCCCC
Q 014624 120 SLDLSENRIVAVP-ATIGGLSSLKKLDLHANRII--ELPDSIGDLLSLVYLDLRGNQISAL 177 (421)
Q Consensus 120 ~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~l~~~~l~~l 177 (421)
+|++++|.+..++ ..+.++++|++|++++|.+. .+|..+..+++|++|++++|.++.+
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 8888888888774 57888888888888888887 4677888888888888888876643
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=248.95 Aligned_cols=136 Identities=25% Similarity=0.414 Sum_probs=97.5
Q ss_pred cCCcCccEEEcccCCCCC-chhhhhccCCCCeeecccccCCcC---CcccCCCCCCcEEECcCCCCCC-Cchh-hhccCc
Q 014624 228 GQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSVRYNNIKQL---PTTMSSLSSLRELDVSFNELES-VPES-LCFATT 301 (421)
Q Consensus 228 ~~~~~L~~L~l~~~~l~~-~~~~l~~~~~L~~L~l~~n~l~~l---~~~l~~~~~L~~L~L~~n~l~~-~~~~-~~~~~~ 301 (421)
..+++|++|++++|+++. ++..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 455667777777777664 455666677777777777777653 3456677777777777777765 5543 555677
Q ss_pred ccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 302 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
|+.|++++|... ..+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+++..+..
T Consensus 401 L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 777777777432 23333322 689999999999999999888999999999999999988765
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.3e-29 Score=250.62 Aligned_cols=265 Identities=23% Similarity=0.290 Sum_probs=207.3
Q ss_pred cCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCchh-hhCCCCC
Q 014624 87 SSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDS-IGDLLSL 164 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L 164 (421)
..+++|+.|++++|.+..+. +..+..+++|++|++++|.+..++ ..|.++++|++|++++|.++.+|.. +..+++|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 34567777777777666543 446777777788888777777664 3567777788888877777777654 4677777
Q ss_pred cEEECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 165 VYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
++|++++|.++.++. .+..+++|+.|++++|.+..++ +..+++|+.|++++|.+..+ ...++|+.|++++|.+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI 223 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcc
Confidence 888887777776543 5677777778888777777654 44567777777777766543 2345788888888888
Q ss_pred CCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCccchhhc
Q 014624 244 KALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPRSIG 322 (421)
Q Consensus 244 ~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (421)
+.++... .++|+.|++++|.++.. ..+..+++|+.|++++|.++.+ |..+..+++|+.|++++| .+..+|..+.
T Consensus 224 ~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~ 298 (597)
T 3oja_B 224 NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQ 298 (597)
T ss_dssp CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS--CCCEEECSSS
T ss_pred ccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC--CCCCCCcccc
Confidence 8776433 36899999999999885 6788999999999999999865 678889999999999999 5667888888
Q ss_pred CCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCc
Q 014624 323 NLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
.+++|+.|+|++|.++.+|..+..+++|+.|++++|++...+
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 899999999999999999998999999999999999987664
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.6e-28 Score=239.28 Aligned_cols=275 Identities=25% Similarity=0.344 Sum_probs=187.2
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCC-cC-chhhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV-AV-PATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVY 166 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~-~~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~ 166 (421)
++|++|++++|.+..+. +..+.++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCC--hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 45666666665554432 445556666666666666554 23 33455666666666666665543 445556666666
Q ss_pred EECcCCCCCC-Cchh--hcCCCCCCEEECCCCCCCCC-ccc-cCCCccccccccccccCCCCc-ch--------------
Q 014624 167 LDLRGNQISA-LPVA--LSRLVRLEELDLGSNNLSSL-PDS-IGSLISLKKLIVETNDLEELP-HT-------------- 226 (421)
Q Consensus 167 L~l~~~~l~~-l~~~--~~~~~~L~~L~l~~~~l~~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~-------------- 226 (421)
|++++|.++. ++.. +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+.... ..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 6666665553 2222 55556666666666666544 222 455566666666665554321 11
Q ss_pred --------------------hcCCcCccEEEcccCCCCC-chhhhh----------------------------------
Q 014624 227 --------------------IGQCSSLRELRVDYNRLKA-LPEAVG---------------------------------- 251 (421)
Q Consensus 227 --------------------~~~~~~L~~L~l~~~~l~~-~~~~l~---------------------------------- 251 (421)
+..+++|+.|++++|+++. .+..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 2234678999999988763 222221
Q ss_pred -----ccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCcc-chhhcC
Q 014624 252 -----KIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PRSIGN 323 (421)
Q Consensus 252 -----~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 323 (421)
..++|+.|++++|.++.+ +..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.. ..+ +..+..
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~ 345 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL--GSIDSRMFEN 345 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECGGGGTT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc--CCcChhHhcC
Confidence 125789999999988884 67889999999999999999976 45788999999999999953 444 677899
Q ss_pred CCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 324 LEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 324 l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
+++|++|+|++|.++.+ |..+..+++|++|++++|+++..+...+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 99999999999999977 6689999999999999999988776543
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4e-30 Score=257.81 Aligned_cols=209 Identities=24% Similarity=0.266 Sum_probs=173.9
Q ss_pred hCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccc--------------------cCCCccccccccccc
Q 014624 159 GDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS--------------------IGSLISLKKLIVETN 218 (421)
Q Consensus 159 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~--------------------~~~l~~L~~L~l~~n 218 (421)
..+++|++|++++|.++.+|..+..+ +|+.|++++|.+..+|.. ...+++|+.|++++|
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 34567888888888887777776666 777777777776655431 146778889999998
Q ss_pred cCCCC---cchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC--cccCCCCCCcEEECcCCCCCC-C
Q 014624 219 DLEEL---PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELES-V 292 (421)
Q Consensus 219 ~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~L~~n~l~~-~ 292 (421)
.++.. +..+..+++|+.|++++|.+..++..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.+.. .
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 88755 56788899999999999999988766889999999999999998864 478899999999999999885 4
Q ss_pred chhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 293 PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
+..+..+++|+.|++++|......+|..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+++..+...+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 567888999999999999654456888899999999999999999977 6789999999999999999988776543
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=237.61 Aligned_cols=276 Identities=26% Similarity=0.379 Sum_probs=240.0
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 166 (421)
.++++.|++++|.+..+. +..|.++++|++|++++|.+..+ +..|.++++|++|++++|.++.++. .+..+++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 468999999999888765 57889999999999999999987 6789999999999999999998875 4788999999
Q ss_pred EECcCCCCCCC-chhhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCC
Q 014624 167 LDLRGNQISAL-PVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 167 L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l 243 (421)
|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999999865 55788999999999999999865 4578899999999999999998764 588999999999999999
Q ss_pred CCch-hhhhccCCCCeeecccccCCc-CCcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCcc-ch
Q 014624 244 KALP-EAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRAL-PR 319 (421)
Q Consensus 244 ~~~~-~~l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~ 319 (421)
..++ ..+..+++|+.|++++|.... ++.......+|++|++++|.++.++. .+..+++|+.|++++|. +..+ +.
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~ 266 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP--ISTIEGS 266 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC--CCEECTT
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc--CCccChh
Confidence 8765 467889999999999986544 66666666799999999999998884 67889999999999995 3344 34
Q ss_pred hhcCCCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 320 SIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 320 ~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
.+..+++|+.|+|++|+++.+ +..+..+++|+.|++++|.++..+...+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 678999999999999999977 5688999999999999999998876553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.2e-28 Score=235.38 Aligned_cols=319 Identities=29% Similarity=0.329 Sum_probs=163.3
Q ss_pred cCCCCccceeecccchhHHHhhhhHHHHHHhcccccccCccceeeecccCCC---------CCccchH--Hhhhhhhhcc
Q 014624 19 PLSNPVPFLVSFIPLFSSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQ---------DGEKLSL--IKLASLIEVS 87 (421)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~ 87 (421)
..++.+....+.+-.....++++++|+.|+++++.+.|.+|..++.+..... ....+.+ ..+..+..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-- 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS--
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC--
Confidence 3444444433333222233788999999999999999999987665432100 0000000 00001111
Q ss_pred CCCCCcEEEcCCcccccccccchh-------------hcCC-CCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCC
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDS-------------IGKL-SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE 153 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~-------------~~~~-~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~ 153 (421)
..++|++|++++|.+.++...+.. +... ++|++|++++|.+..+| .+.++++|++|++++|.++.
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC
T ss_pred CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc
Confidence 123555555555544432211000 0001 35666666666655555 35566666666666666655
Q ss_pred CchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCc
Q 014624 154 LPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSL 233 (421)
Q Consensus 154 l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 233 (421)
+|.. ..+|++|++++|.++.+| .+..+++|+.|++++|.+..+|... ++|+.|++++|.++.++ .+..+++|
T Consensus 168 lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L 239 (454)
T 1jl5_A 168 LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFL 239 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCC
Confidence 5432 235666666666665555 3555666666666666655554322 35566666666665554 35566666
Q ss_pred cEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchh---h-------------h
Q 014624 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES---L-------------C 297 (421)
Q Consensus 234 ~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~---~-------------~ 297 (421)
+.|++++|+++.+|.. +++|+.|++++|.++.+|.. +++|++|++++|.++.++.. + .
T Consensus 240 ~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~ 313 (454)
T 1jl5_A 240 TTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313 (454)
T ss_dssp CEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC
T ss_pred CEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc
Confidence 6666666666655432 24556666666655554432 24455555555544432210 0 0
Q ss_pred c-cCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCC
Q 014624 298 F-ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEV 362 (421)
Q Consensus 298 ~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~ 362 (421)
. +++|+.|++++|. +..+|.. +++|+.|++++|.++.+|. .+++|+.|++++|+++.
T Consensus 314 ~~~~~L~~L~Ls~N~--l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 314 DLPPSLEELNVSNNK--LIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCCTTCCEEECCSSC--CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred CCcCcCCEEECCCCc--ccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc
Confidence 1 2466677776663 3345433 4678888888888887777 46788888888888876
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.6e-29 Score=247.04 Aligned_cols=272 Identities=24% Similarity=0.289 Sum_probs=153.5
Q ss_pred hHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCCCEE
Q 014624 42 TDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSL 121 (421)
Q Consensus 42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 121 (421)
++|+.|+++++.+.+..|.. +..+++|++|++++|.+..+. +..+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L 79 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD------------------------LRACANLQVLILKSSRINTIE--GDAFYSLGSLEHL 79 (549)
T ss_dssp TTCCEEECCSSCCCEECSST------------------------TSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhh------------------------hhcCCcccEEECCCCCcCccC--hhhccccccCCEE
Confidence 57888888888877655542 233445555555555544432 3445555555555
Q ss_pred EccCCcCCcCch-hhcCCCCCcEEEccCCCCCC--CchhhhCCCCCcEEECcCCC-CCCCc-hhhcCCCCCCEEECCCCC
Q 014624 122 DLSENRIVAVPA-TIGGLSSLKKLDLHANRIIE--LPDSIGDLLSLVYLDLRGNQ-ISALP-VALSRLVRLEELDLGSNN 196 (421)
Q Consensus 122 ~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~l~~~~-l~~l~-~~~~~~~~L~~L~l~~~~ 196 (421)
++++|.+..++. .+.++++|++|++++|.++. ++..+..+++|++|++++|. +..++ ..+..+++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 555555555433 35555555555555555552 23344555555555555554 33333 244455555555555554
Q ss_pred CC------------------------CCcccc-CCCccccccccccccCCCCc---ch----------------------
Q 014624 197 LS------------------------SLPDSI-GSLISLKKLIVETNDLEELP---HT---------------------- 226 (421)
Q Consensus 197 l~------------------------~~~~~~-~~l~~L~~L~l~~n~~~~~~---~~---------------------- 226 (421)
+. .++..+ ..+++|+.|++++|.++..+ ..
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 44 332221 23566777777776655421 00
Q ss_pred ------------------------------------------------------------------hcCCcCccEEEccc
Q 014624 227 ------------------------------------------------------------------IGQCSSLRELRVDY 240 (421)
Q Consensus 227 ------------------------------------------------------------------~~~~~~L~~L~l~~ 240 (421)
....++|+.+++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 00012455556666
Q ss_pred CCCCCchhhh-hccCCCCeeecccccCCc-CC---cccCCCCCCcEEECcCCCCCCCc---hhhhccCcccEEEccCCcc
Q 014624 241 NRLKALPEAV-GKIHTLEVLSVRYNNIKQ-LP---TTMSSLSSLRELDVSFNELESVP---ESLCFATTLVKMNIGNNFA 312 (421)
Q Consensus 241 ~~l~~~~~~l-~~~~~L~~L~l~~n~l~~-l~---~~l~~~~~L~~L~L~~n~l~~~~---~~~~~~~~L~~L~l~~~~~ 312 (421)
|.++.+|..+ ..+++|+.|++++|.+++ ++ ..++.+++|++|++++|.++.++ ..+..+++|+.|++++|
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-- 397 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-- 397 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC--
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC--
Confidence 6666666544 457777777777777765 22 23566777777777777777654 24666777777777777
Q ss_pred CCCccchhhcCCCCCcEEeCccCCCCccc
Q 014624 313 DLRALPRSIGNLEMLEELDISNNQIRVLP 341 (421)
Q Consensus 313 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 341 (421)
.+..+|..+..+++|++|++++|.++.+|
T Consensus 398 ~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred CCccCChhhcccccccEEECCCCCccccc
Confidence 34466666666666666666666665444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.9e-27 Score=231.04 Aligned_cols=299 Identities=18% Similarity=0.217 Sum_probs=188.0
Q ss_pred HhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCC
Q 014624 38 CLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSS 117 (421)
Q Consensus 38 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 117 (421)
++.+++|+.|+++++.+.+. |. +..+..... -.++...+..+ .+..+++|++|++++|.+.++ + +..+++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~~-l~~l~~L~~--L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~---~--~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-TG-IEKLTGLTK--LICTSNNITTL-DLSQNTNLTYLACDSNKLTNL---D--VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-TT-GGGCTTCSE--EECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC---C--CTTCTT
T ss_pred hhHcCCCCEEEccCCCcccC-hh-hcccCCCCE--EEccCCcCCeE-ccccCCCCCEEECcCCCCcee---e--cCCCCc
Confidence 46778888899998887763 32 111111000 00000011111 144556666666666655543 1 456666
Q ss_pred CCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCchhhcCCCCCCEEECCCCC
Q 014624 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGN-QISALPVALSRLVRLEELDLGSNN 196 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~~ 196 (421)
|++|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++| .+..+ .+..+++|+.|++++|.
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 666666666666653 556666666666666666552 556666666666666 33344 34556677777777777
Q ss_pred CCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCC
Q 014624 197 LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSL 276 (421)
Q Consensus 197 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~ 276 (421)
++.++ +..+++|+.|++++|.++.+ .+..+++|+.|++++|+++.+| +..+++|+.|++++|.++.++ +..+
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l 253 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTL 253 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred cceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHC
Confidence 77665 66667777777777777665 2566777777777777777765 566777777777777777664 3445
Q ss_pred CCCcEEECcCCCCCCCc---------hhhhccCcccEEEccCCccCCCccch--------hhcCCCCCcEEeCccCCCCc
Q 014624 277 SSLRELDVSFNELESVP---------ESLCFATTLVKMNIGNNFADLRALPR--------SIGNLEMLEELDISNNQIRV 339 (421)
Q Consensus 277 ~~L~~L~L~~n~l~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~~l~~L~~L~L~~n~l~~ 339 (421)
++|+.|++++|.+..+. .....+++|+.|++++|.. .+.+|. .++.+++|+.|++++|+++.
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~-l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ-LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT-CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc-cceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 55555555555443221 0124567888888888741 222221 25677899999999999998
Q ss_pred cchhhcCCCCCCEEEccCCCCCCC
Q 014624 340 LPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 340 l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
++ +..+++|+.|++++|+++..
T Consensus 333 l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 333 LD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCCBC
T ss_pred cc--cccCCcCcEEECCCCCCCCc
Confidence 74 88999999999999999865
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.7e-27 Score=222.24 Aligned_cols=261 Identities=22% Similarity=0.364 Sum_probs=189.4
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEE
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLD 168 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 168 (421)
+++.++++++.+..+ |..+ .+.+++|++++|.++.++. .+.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~l---p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV---PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSC---CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcccc---CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 567777777655443 3333 2577888888888777644 677788888888888877765 56777788888888
Q ss_pred CcCCCCCCCchhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCC---CCcchhcCCcCccEEEcccCCCC
Q 014624 169 LRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLE---ELPHTIGQCSSLRELRVDYNRLK 244 (421)
Q Consensus 169 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L~~L~l~~~~l~ 244 (421)
+++|.++.+|..+. ++|++|++++|.+..++ ..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 88888777766543 67888888888777664 34677788888888887775 23455677788888888888887
Q ss_pred CchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCccchhhc
Q 014624 245 ALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIG 322 (421)
Q Consensus 245 ~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (421)
.+|..+. ++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++| .+..+|.++.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC--cCccCChhhc
Confidence 7765443 6788888888887775 4677788888888888888876543 6677788888888888 4557777777
Q ss_pred CCCCCcEEeCccCCCCccch-hhc------CCCCCCEEEccCCCCCC
Q 014624 323 NLEMLEELDISNNQIRVLPD-SFR------MLSRLRVLRVQENPLEV 362 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~~l~~-~~~------~l~~L~~L~l~~n~~~~ 362 (421)
.+++|++|++++|.|+.++. .+. ..+.++.+++++|++..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 88888888888888887764 232 23677788888888753
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-27 Score=222.28 Aligned_cols=263 Identities=22% Similarity=0.370 Sum_probs=223.5
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYL 167 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 167 (421)
.+.++.|++++|.+..+. +..+.++++|++|++++|.+..+ +..+.++++|++|++++|.++.+|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence 368999999999887765 45788999999999999999987 7789999999999999999998877553 799999
Q ss_pred ECcCCCCCCCch-hhcCCCCCCEEECCCCCCCC---CccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 168 DLRGNQISALPV-ALSRLVRLEELDLGSNNLSS---LPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 168 ~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
++++|.++.++. .+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++.++..+. ++|+.|++++|++
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcC
Confidence 999999998765 58899999999999998873 35668889999999999999998876554 7999999999999
Q ss_pred CCc-hhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccch-h
Q 014624 244 KAL-PEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR-S 320 (421)
Q Consensus 244 ~~~-~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 320 (421)
+.+ +..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|. +..++. .
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~--i~~~~~~~ 282 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN--ISAIGSND 282 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC--CCCCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc--CCccChhh
Confidence 976 467889999999999999999865 47889999999999999999999999999999999999994 444432 2
Q ss_pred hc------CCCCCcEEeCccCCCCc--c-chhhcCCCCCCEEEccCCC
Q 014624 321 IG------NLEMLEELDISNNQIRV--L-PDSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 321 ~~------~l~~L~~L~L~~n~l~~--l-~~~~~~l~~L~~L~l~~n~ 359 (421)
+. ..+.++.|++++|.++. + |..+..+++++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 32 24789999999998873 3 4678889999999999984
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.4e-27 Score=222.94 Aligned_cols=261 Identities=25% Similarity=0.390 Sum_probs=166.0
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 168 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 168 (421)
++++.|++++|.+..+. +..+.++++|++|++++|.+..+ +..+.++++|++|++++|.++.+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 46777777776665543 44566777777777777777665 5566777777777777777776665443 6777777
Q ss_pred CcCCCCCCCch-hhcCCCCCCEEECCCCCCCC---CccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCC
Q 014624 169 LRGNQISALPV-ALSRLVRLEELDLGSNNLSS---LPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLK 244 (421)
Q Consensus 169 l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~ 244 (421)
+++|.++.++. .+..+++|+.|++++|.+.. .+..+..+ +|+.|++++|.++.++..+. ++|+.|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 77777776654 36667777777777776652 23444445 67777777777776655433 56777777777776
Q ss_pred Cch-hhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccch-hh
Q 014624 245 ALP-EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR-SI 321 (421)
Q Consensus 245 ~~~-~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 321 (421)
.++ ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|. +..++. .+
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~--l~~~~~~~~ 284 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN--ITKVGVNDF 284 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC--CCBCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC--CCccChhHc
Confidence 554 45666677777777777777654 35666777777777777777777667777777777777763 233321 22
Q ss_pred cC------CCCCcEEeCccCCCC--cc-chhhcCCCCCCEEEccCCC
Q 014624 322 GN------LEMLEELDISNNQIR--VL-PDSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 322 ~~------l~~L~~L~L~~n~l~--~l-~~~~~~l~~L~~L~l~~n~ 359 (421)
.. .+.|+.|++++|.++ .+ |..+..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 21 355677777777665 23 3456667777777776663
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-27 Score=222.75 Aligned_cols=259 Identities=24% Similarity=0.364 Sum_probs=223.8
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEE
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLD 168 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 168 (421)
.++.++++++.+..+ |..+ .++|++|++++|.+..+ +..+.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~i---p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV---PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSC---CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcccc---CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 588999998876654 4444 36899999999999987 45899999999999999999976 66889999999999
Q ss_pred CcCCCCCCCchhhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccccCCC---CcchhcCCcCccEEEcccCCCC
Q 014624 169 LRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEE---LPHTIGQCSSLRELRVDYNRLK 244 (421)
Q Consensus 169 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~L~~L~l~~~~l~ 244 (421)
+++|.++.+|..+. ++|++|++++|.+..++. .+..+++|+.|++++|.++. .+..+..+ +|+.|++++|+++
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999999887655 899999999999998864 47899999999999999863 34556666 8999999999999
Q ss_pred CchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCccchhhc
Q 014624 245 ALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRALPRSIG 322 (421)
Q Consensus 245 ~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (421)
.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++| .+..+|..+.
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 261 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLP 261 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC--cCeecChhhh
Confidence 9886554 79999999999999975 689999999999999999997765 7888999999999999 5568999999
Q ss_pred CCCCCcEEeCccCCCCccch-hhcC------CCCCCEEEccCCCCC
Q 014624 323 NLEMLEELDISNNQIRVLPD-SFRM------LSRLRVLRVQENPLE 361 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~~l~~-~~~~------l~~L~~L~l~~n~~~ 361 (421)
.+++|+.|++++|.++.++. .+.. .++|+.|++++|++.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999998874 3333 467999999999987
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-27 Score=239.48 Aligned_cols=267 Identities=25% Similarity=0.334 Sum_probs=194.8
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLD 168 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 168 (421)
+++++|++++|.+..+. +..+..+++|++|++++|.++.+ +..|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 68999999999888765 57899999999999999999987 67899999999999999999998876 899999999
Q ss_pred CcCCCCCCCc--hhhcCCCCCCEEECCCCCCCCCccccCCCccc--cccccc----------------------------
Q 014624 169 LRGNQISALP--VALSRLVRLEELDLGSNNLSSLPDSIGSLISL--KKLIVE---------------------------- 216 (421)
Q Consensus 169 l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L--~~L~l~---------------------------- 216 (421)
+++|.++.++ ..+..+++|++|++++|.+... .+..+++| +.|+++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999999764 6899999999999999987642 11222222 333333
Q ss_pred -------------------------------------------------------------------------------c
Q 014624 217 -------------------------------------------------------------------------------T 217 (421)
Q Consensus 217 -------------------------------------------------------------------------------~ 217 (421)
+
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 3
Q ss_pred ccCC-CCcchh-----------------------------------------------------cCCcCccEEEcccCCC
Q 014624 218 NDLE-ELPHTI-----------------------------------------------------GQCSSLRELRVDYNRL 243 (421)
Q Consensus 218 n~~~-~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~l 243 (421)
|.+. .+|..+ ..+++|++|++++|++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 3332 222211 3445566666666666
Q ss_pred CC-chhhhhccCCCCeeecccccCCcCC---cccCCCCCCcEEECcCCCCCC-Cchh-hhccCcccEEEccCCccCCCcc
Q 014624 244 KA-LPEAVGKIHTLEVLSVRYNNIKQLP---TTMSSLSSLRELDVSFNELES-VPES-LCFATTLVKMNIGNNFADLRAL 317 (421)
Q Consensus 244 ~~-~~~~l~~~~~L~~L~l~~n~l~~l~---~~l~~~~~L~~L~L~~n~l~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~ 317 (421)
+. ++..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++. ++.. +..+++|+.|++++|... ..+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSV 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cch
Confidence 54 3455566666666666666666543 345666666666666666664 5442 445666666666666422 222
Q ss_pred chhhcCC-CCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 318 PRSIGNL-EMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 318 ~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
| ..+ ++|+.|++++|+++.+|..+..+++|+.|++++|+++..+..
T Consensus 445 ~---~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 445 F---RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp G---SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred h---hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 2 233 689999999999999998888999999999999999988765
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.2e-28 Score=246.50 Aligned_cols=277 Identities=24% Similarity=0.318 Sum_probs=212.8
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCC--cCc-hhhc--CCCCCcEEEccCCCCCCC-chhhh
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIV--AVP-ATIG--GLSSLKKLDLHANRIIEL-PDSIG 159 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~--~~~-~~l~--~l~~L~~L~L~~~~i~~l-~~~~~ 159 (421)
+..+++|++|++++|.+..+. +..+..+++|++|++++|.+. .++ ..+. ..++|++|++++|.++.+ +..+.
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred cccCCCCCEEECCCCccCCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 345667777777777666543 456677777777777777533 222 1222 235677788887777754 45677
Q ss_pred CCCCCcEEECcCCCCC-CCc-hhhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCC---CCcchhcCCcCc
Q 014624 160 DLLSLVYLDLRGNQIS-ALP-VALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLE---ELPHTIGQCSSL 233 (421)
Q Consensus 160 ~l~~L~~L~l~~~~l~-~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~~~L 233 (421)
.+++|++|++++|.++ .++ ..+..+++|+.|++++|++..+ +..+..+++|+.|++++|.+. ..|..+..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 8888888888888876 354 5677888888888888887754 456777888999998888765 456778889999
Q ss_pred cEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCC---------cccCCCCCCcEEECcCCCCCCCch-hhhccCcc
Q 014624 234 RELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLP---------TTMSSLSSLRELDVSFNELESVPE-SLCFATTL 302 (421)
Q Consensus 234 ~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~---------~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L 302 (421)
+.|++++|+++.++. .+..+++|+.|++++|.++.++ ..+.++++|++|++++|+++.+|. .+..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 999999999997764 5788899999999999888753 137888999999999999998876 57889999
Q ss_pred cEEEccCCccCCCccch-hhcCCCCCcEEeCccCCCCccch-hhc-CCCCCCEEEccCCCCCCCcHH
Q 014624 303 VKMNIGNNFADLRALPR-SIGNLEMLEELDISNNQIRVLPD-SFR-MLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 303 ~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~-~~~-~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+.|++++| .+..+|. .+..+++|+.|+|++|+++.++. .+. .+++|+.+++++||+.|.|..
T Consensus 563 ~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLN--NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECCSS--CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ceeECCCC--CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999 4455655 46788999999999999998875 455 688999999999999998863
No 38
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=7e-27 Score=233.79 Aligned_cols=241 Identities=31% Similarity=0.385 Sum_probs=210.1
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
++|++|++++|.+..+. . .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp---~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP---A---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCC---C---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCC---C---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 58999999999877543 3 57899999999999998876 78999999999999998876 6789999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
++|.++.+|.. +++|++|++++|.+..+|. .+++|+.|++++|.++.++ ..+++|+.|++++|.++.++..
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc
Confidence 99999998864 4899999999999998875 3467899999999999887 4578999999999999988753
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
.++|+.|++++|.++.+|.. +++|++|++++|.++.+| ..+++|+.|++++| .+..+|. .+++|+.
T Consensus 200 ---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLS 265 (622)
T ss_dssp ---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCE
T ss_pred ---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcE
Confidence 47899999999999998753 488999999999999887 45689999999999 5567776 6789999
Q ss_pred EeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcH
Q 014624 330 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 330 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
|+|++|.|+.+|..+..+++|+.|++++|+++....
T Consensus 266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp EECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred EeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 999999999999999999999999999999985443
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=224.21 Aligned_cols=251 Identities=25% Similarity=0.321 Sum_probs=145.2
Q ss_pred CCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCchh-hcCCCCCCEEECC
Q 014624 117 SLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVA-LSRLVRLEELDLG 193 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~ 193 (421)
+|++|++++|.+..++. .+.++++|++|++++|.++.++ ..+..+++|++|++++|.++.++.. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554433 4555555555555555555432 3355555555555555555555443 4555555555555
Q ss_pred CCCCCCCcc--ccCCCccccccccccc-cCCCC-cchhcCCcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCc
Q 014624 194 SNNLSSLPD--SIGSLISLKKLIVETN-DLEEL-PHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQ 268 (421)
Q Consensus 194 ~~~l~~~~~--~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~ 268 (421)
+|++..++. .+..+++|+.|++++| .+..+ +..+..+++|+.|++++|+++.+ +..+..+++|++|++++|.++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 555555443 3445555555555555 23333 23444555555555555555533 3445555555555555555554
Q ss_pred CCcc-cCCCCCCcEEECcCCCCCCCch----hhhccCcccEEEccCCcc---CCCccchhhcCCCCCcEEeCccCCCCcc
Q 014624 269 LPTT-MSSLSSLRELDVSFNELESVPE----SLCFATTLVKMNIGNNFA---DLRALPRSIGNLEMLEELDISNNQIRVL 340 (421)
Q Consensus 269 l~~~-l~~~~~L~~L~L~~n~l~~~~~----~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~l 340 (421)
++.. +..+++|++|++++|.++..+. .......++.+++.++.. .+..+|.++..+++|+.|++++|+++.+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 4432 2334555555555555553321 112234455555555421 2234677889999999999999999999
Q ss_pred chh-hcCCCCCCEEEccCCCCCCCcHHH
Q 014624 341 PDS-FRMLSRLRVLRVQENPLEVPPRNI 367 (421)
Q Consensus 341 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~ 367 (421)
|.. +..+++|+.|++++|++.+.++.+
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 986 589999999999999999988643
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7e-27 Score=217.47 Aligned_cols=234 Identities=24% Similarity=0.353 Sum_probs=126.4
Q ss_pred CCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCC
Q 014624 115 LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGS 194 (421)
Q Consensus 115 ~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 194 (421)
.+++++|++++|.+..+|..+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 34556666666666655555555666666666666666555555666666666666666666665566666666666666
Q ss_pred CCCC-CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCccc
Q 014624 195 NNLS-SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTM 273 (421)
Q Consensus 195 ~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l 273 (421)
|.+. .+|..+.. . .+...+..+++|+.|++++|+++.+|..+..+++|++|++++|.++.+|..+
T Consensus 160 n~~~~~~p~~~~~------~--------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 160 CPELTELPEPLAS------T--------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp ETTCCCCCSCSEE------E--------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred CCCccccChhHhh------c--------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 4332 33432221 0 0011123344444444444444444444444444444444444444444444
Q ss_pred CCCCCCcEEECcCCCCC-CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC-ccchhhcCCCCCC
Q 014624 274 SSLSSLRELDVSFNELE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLR 351 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~ 351 (421)
..+++|++|++++|.+. .+|..+..+++|+.|++++|. ....+|..+..+++|+.|+|++|.+. .+|..+..+++|+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 44445555555544433 334444444555555555443 23455556667777777777777444 6777777777777
Q ss_pred EEEccCCCCCCC
Q 014624 352 VLRVQENPLEVP 363 (421)
Q Consensus 352 ~L~l~~n~~~~~ 363 (421)
.+.+..+.+...
T Consensus 305 ~l~l~~~~~~~l 316 (328)
T 4fcg_A 305 IILVPPHLQAQL 316 (328)
T ss_dssp EEECCGGGSCC-
T ss_pred EEeCCHHHHHHH
Confidence 777776655443
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.6e-27 Score=216.27 Aligned_cols=228 Identities=25% Similarity=0.322 Sum_probs=136.8
Q ss_pred CCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCC---chhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEE
Q 014624 116 SSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIEL---PDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELD 191 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 191 (421)
++|++|++++|.+..++. .|.++++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 455666666666555543 345556666666666655533 3444455555555555555555554455555555555
Q ss_pred CCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCc--
Q 014624 192 LGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQ-- 268 (421)
Q Consensus 192 l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~-- 268 (421)
+++|.+..++. ...+..+++|+.|++++|.++.. +..+..+++|++|++++|.++.
T Consensus 108 l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 108 FQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CTTSEEESSTT---------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCCCccccccc---------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 55555444332 01344445555555555555422 2334555566666666665554
Q ss_pred CCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCcc-chhhc
Q 014624 269 LPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVL-PDSFR 345 (421)
Q Consensus 269 l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l-~~~~~ 345 (421)
+|..+..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..++ ..+..+++|+.|++++|.++.. +..+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc--cCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 455556666666666666666544 3455556666666666663 22222 3577889999999999999965 45778
Q ss_pred CCC-CCCEEEccCCCCCCCcHH
Q 014624 346 MLS-RLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 346 ~l~-~L~~L~l~~n~~~~~~~~ 366 (421)
.++ +|+.|++++|++++.|..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCCEEEccCCCeecccCh
Confidence 885 999999999999998753
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.8e-28 Score=223.98 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=137.2
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccC-CcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCCCCCcE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSE-NRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDLLSLVY 166 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~ 166 (421)
..+++|+++++.+.+...+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666655544223455555666666666653 4444 34555556666666666666555 45555555666666
Q ss_pred EECcCCCCC-CCchhhcCCCCCCEEECCCCCCC-CCccccCCCc-cccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 167 LDLRGNQIS-ALPVALSRLVRLEELDLGSNNLS-SLPDSIGSLI-SLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 167 L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++ .|+.|++++|.++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--------------------- 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--------------------- 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---------------------
Confidence 666666555 44555555555555555555554 4444444444 44444444444441
Q ss_pred CCchhhhhccCCCCeeecccccCCc-CCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhc
Q 014624 244 KALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIG 322 (421)
Q Consensus 244 ~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (421)
.+|..+..+. |+.|++++|.++. .+..+..+++|+.|++++|.++..+..+..+++|+.|++++|... ..+|..+.
T Consensus 189 -~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~ 265 (313)
T 1ogq_A 189 -KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLT 265 (313)
T ss_dssp -ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGG
T ss_pred -cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHh
Confidence 3334444443 5555555555543 334455555555555555555543333445555555555555321 24566677
Q ss_pred CCCCCcEEeCccCCCC-ccchhhcCCCCCCEEEccCCCC
Q 014624 323 NLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~n~~ 360 (421)
.+++|+.|++++|+++ .+|.. ..+++|+.+++++|+.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 7777778888887777 55553 6677777788888773
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=244.67 Aligned_cols=155 Identities=24% Similarity=0.289 Sum_probs=83.1
Q ss_pred hhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccc-cccccchhhcCCCCCC
Q 014624 41 LTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMD-NIEWLPDSIGKLSSLV 119 (421)
Q Consensus 41 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~~~~~L~ 119 (421)
.++++.||++++.+.+..+.. +..+++|+.|++++|... .+. |..+.++++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~------------------------~~~l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~ 76 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASS------------------------FPFLEQLQLLELGSQYTPLTID--KEAFRNLPNLR 76 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSS------------------------CSSCCSCSEEEECTTCCCCEEC--TTTTSSCTTCC
T ss_pred CCCcCEEECCCCcCCccChhH------------------------CcccccCeEEeCCCCCCccccC--HHHhcCCCCCC
Confidence 367888999998887665543 234445666666555321 111 34555556666
Q ss_pred EEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCC-Cchh--hhCCCCCcEEECcCCCCCCC--chhhcCCCCCCEEECC
Q 014624 120 SLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIE-LPDS--IGDLLSLVYLDLRGNQISAL--PVALSRLVRLEELDLG 193 (421)
Q Consensus 120 ~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~l~ 193 (421)
+|++++|.+..+ |..|.++++|++|++++|.++. ++.. +..+++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 666666655544 4455556666666666655553 2222 55555666666666655543 2345555666666666
Q ss_pred CCCCCCC-ccccCCC--ccccccccccccCC
Q 014624 194 SNNLSSL-PDSIGSL--ISLKKLIVETNDLE 221 (421)
Q Consensus 194 ~~~l~~~-~~~~~~l--~~L~~L~l~~n~~~ 221 (421)
+|.+..+ +..+..+ ++|+.|++++|.+.
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 5555432 2223222 34444444444433
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.2e-26 Score=235.55 Aligned_cols=255 Identities=25% Similarity=0.346 Sum_probs=182.8
Q ss_pred hcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCC--CCch-hhh--CCCCCcEEECcCCCCCCC-chhhcCC
Q 014624 112 IGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRII--ELPD-SIG--DLLSLVYLDLRGNQISAL-PVALSRL 184 (421)
Q Consensus 112 ~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~--~l~~-~~~--~l~~L~~L~l~~~~l~~l-~~~~~~~ 184 (421)
+..+++|++|++++|.+..+ +..|.++++|++|++++|.+. .++. .+. ..++|+.|++++|.++.+ |..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 44455555555555555544 234555555555555555422 2211 111 124566666666666644 3456777
Q ss_pred CCCCEEECCCCCCC-CCc-cccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCCCC---CchhhhhccCCCCe
Q 014624 185 VRLEELDLGSNNLS-SLP-DSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLK---ALPEAVGKIHTLEV 258 (421)
Q Consensus 185 ~~L~~L~l~~~~l~-~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~---~~~~~l~~~~~L~~ 258 (421)
++|+.|++++|.+. .++ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 78888888888775 343 5567778888888888877644 345677888888888888765 45667888899999
Q ss_pred eecccccCCcCC-cccCCCCCCcEEECcCCCCCCCch---------hhhccCcccEEEccCCccCCCccch-hhcCCCCC
Q 014624 259 LSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPE---------SLCFATTLVKMNIGNNFADLRALPR-SIGNLEML 327 (421)
Q Consensus 259 L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~---------~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L 327 (421)
|++++|.++.++ ..+.++++|++|++++|.++.++. .+..+++|+.|++++| .+..+|. .+..+++|
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTC
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHcccccCc
Confidence 999999999876 468899999999999999886532 2677899999999999 4456765 58899999
Q ss_pred cEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 328 EELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 328 ~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
+.|++++|+++.+|. .+..+++|+.|++++|.++..+...+
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 999999999999886 46889999999999999998877644
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.1e-27 Score=217.41 Aligned_cols=220 Identities=22% Similarity=0.324 Sum_probs=177.0
Q ss_pred CCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccc
Q 014624 137 GLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVE 216 (421)
Q Consensus 137 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~ 216 (421)
..+++++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35778888888888888887777888888888888888888877788888888888888888777777777777777777
Q ss_pred cccCC-CCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchh
Q 014624 217 TNDLE-ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES 295 (421)
Q Consensus 217 ~n~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 295 (421)
+|.+. .+|..+.. .. +...+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++..
T Consensus 159 ~n~~~~~~p~~~~~------~~--------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 159 ACPELTELPEPLAS------TD--------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp EETTCCCCCSCSEE------EC---------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CCCCccccChhHhh------cc--------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 75443 33332211 11 11234668999999999999999999999999999999999999999999
Q ss_pred hhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC-ccchhhcCCCCCCEEEccCCCCC-CCcHHHHhcC
Q 014624 296 LCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSRLRVLRVQENPLE-VPPRNIVEMG 371 (421)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~ 371 (421)
+..+++|+.|++++|. ....+|..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|++. ..|..+..+.
T Consensus 225 l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp GGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred hccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 9999999999999986 34678888999999999999998555 78889999999999999998864 4555554433
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2e-27 Score=219.80 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=162.2
Q ss_pred hccCCCCCcEEEcCC-cccccccccchhhcCCCCCCEEEccCCcCC-cCchhhcCCCCCcEEEccCCCCC-CCchhhhCC
Q 014624 85 EVSSKKGTRDLNLQN-KLMDNIEWLPDSIGKLSSLVSLDLSENRIV-AVPATIGGLSSLKKLDLHANRII-ELPDSIGDL 161 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l 161 (421)
.+..+++|++|++++ +.+.+ .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+..+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred hHhCCCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 456788999999995 66655 34788999999999999999998 67888999999999999999998 678899999
Q ss_pred CCCcEEECcCCCCC-CCchhhcCCC-CCCEEECCCCCCC-CCccccCCCccccccccccccCCC-CcchhcCCcCccEEE
Q 014624 162 LSLVYLDLRGNQIS-ALPVALSRLV-RLEELDLGSNNLS-SLPDSIGSLISLKKLIVETNDLEE-LPHTIGQCSSLRELR 237 (421)
Q Consensus 162 ~~L~~L~l~~~~l~-~l~~~~~~~~-~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~L~~L~ 237 (421)
++|++|++++|.++ .+|..+..++ .|+.|++++|.+. .+|..+..+. |+.|++++|.++. .+..+..+++|+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 99999999999998 7888898888 9999999999988 5677676666 8888888887763 455566777777777
Q ss_pred cccCCCCCchhhhhccCCCCeeecccccCC-cCCcccCCCCCCcEEECcCCCCC
Q 014624 238 VDYNRLKALPEAVGKIHTLEVLSVRYNNIK-QLPTTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 238 l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~L~~n~l~ 290 (421)
+++|.++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 777777654444556666777777776666 35666666666666666666665
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=5e-26 Score=230.78 Aligned_cols=112 Identities=27% Similarity=0.366 Sum_probs=90.4
Q ss_pred cCCCCeeecccccCCc--CCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCcc-chhhcCCCCCc
Q 014624 253 IHTLEVLSVRYNNIKQ--LPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLE 328 (421)
Q Consensus 253 ~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~ 328 (421)
++.++.|++++|.+.. .|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|. +..+ +..+..+++|+
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCBCCCGGGTTCTTCC
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc--CCCCChhHHhCCCCCC
Confidence 3455566666664332 456788899999999999999976 5678899999999999994 4444 45688999999
Q ss_pred EEeCccCCCCccc-hhhcCC-CCCCEEEccCCCCCCCcHH
Q 014624 329 ELDISNNQIRVLP-DSFRML-SRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 329 ~L~L~~n~l~~l~-~~~~~l-~~L~~L~l~~n~~~~~~~~ 366 (421)
.|+|++|+|+.++ ..+..+ ++|+.|++++||+.|.|..
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999775 567777 6899999999999999963
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.6e-26 Score=224.30 Aligned_cols=227 Identities=26% Similarity=0.296 Sum_probs=108.1
Q ss_pred hhHHHHHHhcccccccCccceeeecccCCCCCccchHHh--hh-hhh-hccCC-------------CCCcEEEcCCcccc
Q 014624 41 LTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIK--LA-SLI-EVSSK-------------KGTRDLNLQNKLMD 103 (421)
Q Consensus 41 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~-------------~~L~~L~l~~~~~~ 103 (421)
.+.|+.|+++++.+ +.+|+.++.+... +.+.... +. .++ .+..+ .++++|+++++.+.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L----~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSK----TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -------------------------CCH----HHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccCch-hhCChhHhcccch----hhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 47899999999999 8999877665542 1111111 10 000 11222 24699999999877
Q ss_pred cccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcC
Q 014624 104 NIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSR 183 (421)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~ 183 (421)
++..+ .++|++|++++|.++.+|.. .++|++|++++|.++.++.. .++|++|++++|.++.+| .+..
T Consensus 85 ~lp~~------~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~ 151 (454)
T 1jl5_A 85 SLPEL------PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQN 151 (454)
T ss_dssp CCCSC------CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTT
T ss_pred cCCCC------cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCC
Confidence 75433 25788888888877776542 35666666666666554321 145666666666666555 3555
Q ss_pred CCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeeccc
Q 014624 184 LVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRY 263 (421)
Q Consensus 184 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~ 263 (421)
+++|++|++++|++..+|... .+|++|++++|.++.++ .+..+++|+.|++++|+++.+|... ++|++|++++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcC
Confidence 666666666666655554322 35555556555555554 3555555555555555555443221 3455555555
Q ss_pred ccCCcCCcccCCCCCCcEEECcCCCCCCCc
Q 014624 264 NNIKQLPTTMSSLSSLRELDVSFNELESVP 293 (421)
Q Consensus 264 n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~ 293 (421)
|.++.+|. +..+++|++|++++|+++.+|
T Consensus 225 n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 225 NILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp SCCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred CcCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 55554442 445555555555555544443
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.4e-25 Score=216.15 Aligned_cols=257 Identities=20% Similarity=0.285 Sum_probs=180.7
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSL 164 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 164 (421)
.+..+++|++|++++|.+.++ + +..+++|++|++++|.+..++ +.++++|++|++++|.++.++ +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcC
Confidence 455667777777777766553 2 556777777777777777664 667777777777777777664 6677777
Q ss_pred cEEECcCCCCCCCchhhcCCCCCCEEECCCCC-CCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 165 VYLDLRGNQISALPVALSRLVRLEELDLGSNN-LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
++|++++|.++.++ +..+++|+.|++++|. +..+ .+..+++|+.|++++|.++.++ +..+++|+.|++++|++
T Consensus 130 ~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC
Confidence 77777777777663 5667777777777773 3344 3567777888888888877765 66778888888888888
Q ss_pred CCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCcc---------CC
Q 014624 244 KALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFA---------DL 314 (421)
Q Consensus 244 ~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~---------~~ 314 (421)
+.++ +..+++|+.|++++|.++++| +..+++|+.|++++|.++.++ ...+++|+.|+++++.. ..
T Consensus 204 ~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 204 TKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp SCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred Ceec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 7763 667788888888888888876 777888888888888887665 33455555554444321 12
Q ss_pred CccchhhcCCCCCcEEeCccCCC-Cccch--------hhcCCCCCCEEEccCCCCCCCc
Q 014624 315 RALPRSIGNLEMLEELDISNNQI-RVLPD--------SFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 315 ~~~~~~~~~l~~L~~L~L~~n~l-~~l~~--------~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
..+| ++.+++|+.|++++|.. ..+|. .+..+++|+.|++++|.++..+
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~ 334 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD 334 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence 2333 45678899999999853 33332 2567789999999999998763
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=9.7e-27 Score=243.18 Aligned_cols=312 Identities=23% Similarity=0.301 Sum_probs=185.1
Q ss_pred CCCCccceeecccch-hHHHhhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcC
Q 014624 20 LSNPVPFLVSFIPLF-SSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQ 98 (421)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 98 (421)
.++.+..+.+.+... ...+..+++|+.|+++++...+.++.. .+..+++|++|+++
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-----------------------~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-----------------------AFRNLPNLRILDLG 81 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT-----------------------TTSSCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH-----------------------HhcCCCCCCEEECC
Confidence 444455555544322 123678899999999998776666321 34466788888888
Q ss_pred CcccccccccchhhcCCCCCCEEEccCCcCCc-Cch--hhcCCCCCcEEEccCCCCCCC--chhhhCCCCCcEEECcCCC
Q 014624 99 NKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA-VPA--TIGGLSSLKKLDLHANRIIEL--PDSIGDLLSLVYLDLRGNQ 173 (421)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~-~~~--~l~~l~~L~~L~L~~~~i~~l--~~~~~~l~~L~~L~l~~~~ 173 (421)
+|.+..+. |..+.++++|++|++++|.+.. ++. .+.++++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 82 ~N~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 82 SSKIYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TCCCCEEC--TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCcCcccC--HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 87776653 6677888888888888888775 333 377888888888888887754 2467788888888888887
Q ss_pred CCCC-chhhcCC--CCCCEEECCCCCCCC-CccccCCCcc------ccccccccccCCC-Ccchh---------------
Q 014624 174 ISAL-PVALSRL--VRLEELDLGSNNLSS-LPDSIGSLIS------LKKLIVETNDLEE-LPHTI--------------- 227 (421)
Q Consensus 174 l~~l-~~~~~~~--~~L~~L~l~~~~l~~-~~~~~~~l~~------L~~L~l~~n~~~~-~~~~~--------------- 227 (421)
++.+ +..+..+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+.. .+..+
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 7643 3344443 566667776666552 2333333332 6666666654331 11100
Q ss_pred ---------------------cC--CcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEE
Q 014624 228 ---------------------GQ--CSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLREL 282 (421)
Q Consensus 228 ---------------------~~--~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L 282 (421)
.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+ +..+.++++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 00 14566666666665543 23445556666666666666553 3455666666666
Q ss_pred ECcCCCCCCC-chhhhccCcccEEEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCC
Q 014624 283 DVSFNELESV-PESLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 283 ~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~ 360 (421)
++++|.++.+ +..+..+++|+.|++++|. +..++ ..+..+++|+.|++++|.++.++. +++|+.|++++|++
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNH--IAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKL 393 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCC--CCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCC--CCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCc
Confidence 6666666544 3455556666666666663 22222 235556666666666666654433 44455555555544
Q ss_pred CC
Q 014624 361 EV 362 (421)
Q Consensus 361 ~~ 362 (421)
..
T Consensus 394 ~~ 395 (844)
T 3j0a_A 394 VT 395 (844)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=219.36 Aligned_cols=245 Identities=24% Similarity=0.386 Sum_probs=156.7
Q ss_pred CcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEEC
Q 014624 92 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDL 169 (421)
Q Consensus 92 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l 169 (421)
.+.++.++..+.. +|..+. ++++.|++++|.+..++ ..|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 45 ~~~v~c~~~~l~~---iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLRE---VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSS---CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCc---CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4455655544333 344332 56777777777777653 56677777777777777777554 45666777777777
Q ss_pred cCCCCCCCch-hhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccc-cCCCCcc-hhcCCcCccEEEcccCCCCC
Q 014624 170 RGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETN-DLEELPH-TIGQCSSLRELRVDYNRLKA 245 (421)
Q Consensus 170 ~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~L~~L~l~~~~l~~ 245 (421)
++|.++.++. .+..+++|++|++++|.+..++. .+..+++|+.|++++| .+..++. .+..+++|+.|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 7777776654 46666777777777776665542 4555666666666653 2333222 34455555555555555555
Q ss_pred chhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCC
Q 014624 246 LPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNL 324 (421)
Q Consensus 246 ~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 324 (421)
+|. +..+++|+.|++++|.++.+ +..+.++++|++|++++|+++.+ .+..+..+
T Consensus 200 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l 254 (440)
T 3zyj_A 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI------------------------ERNAFDNL 254 (440)
T ss_dssp CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------------------------CTTSSTTC
T ss_pred ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE------------------------ChhhhcCC
Confidence 542 44455555555555555553 34455555555555555555433 23457788
Q ss_pred CCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 325 EMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
++|+.|+|++|+++.++. .+..+++|+.|++++||+.|+|..
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 999999999999998875 678899999999999999999863
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.1e-25 Score=218.98 Aligned_cols=246 Identities=27% Similarity=0.372 Sum_probs=146.5
Q ss_pred CcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEEC
Q 014624 92 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDL 169 (421)
Q Consensus 92 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l 169 (421)
.+.++.++..+.. +|..+. +++++|++++|.+..+ +..|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 56 ~~~v~c~~~~l~~---iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSE---VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSS---CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCc---cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3455555543333 333332 4566666666666655 445666666666666666666443 35556666666666
Q ss_pred cCCCCCCCch-hhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch
Q 014624 170 RGNQISALPV-ALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 170 ~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
++|.++.++. .+..+++|++|++++|.+..++. .+..+++|+.|++++| +.+..++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~----------------------~~l~~i~ 188 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL----------------------KKLEYIS 188 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC----------------------TTCCEEC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC----------------------CCccccC
Confidence 6666665544 35556666666666666654432 3445555555555542 2233332
Q ss_pred h-hhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCccCCCccchhhcCCC
Q 014624 248 E-AVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNFADLRALPRSIGNLE 325 (421)
Q Consensus 248 ~-~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 325 (421)
. .+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.+ +..+..+++|+.|++++|... ...+..+..++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLA 266 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCT
T ss_pred hhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCC
Confidence 1 2344445555555555555443 244555555555555555543 334455555555555555321 12245678899
Q ss_pred CCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 326 MLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 326 ~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+|+.|+|++|+++.++. .+..+++|+.|++++||+.|+|..
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999998875 578899999999999999999864
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-24 Score=216.18 Aligned_cols=244 Identities=30% Similarity=0.383 Sum_probs=211.3
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEEC
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDL 169 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l 169 (421)
.+++.|+++++.+..+ |..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~l---p~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL---PDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCC---CSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCcc---ChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3689999999887754 44443 799999999999998876 67999999999999999877 7899999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 170 RGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 170 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
++|.++.+|. .+++|+.|++++|+++.+|.. +++|++|++++|.++.++. ..++|+.|++++|.++.++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--
Confidence 9999999887 568999999999999998864 4889999999999998765 3568999999999999987
Q ss_pred hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 250 VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
..+++|+.|++++|.++.+|.. .++|+.|++++|.++.++.. +++|+.|++++| .+..+| ..+++|+.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N--~L~~lp---~~l~~L~~ 245 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN--RLTSLP---VLPSELKE 245 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS--CCSCCC---CCCTTCCE
T ss_pred -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCC--ccCcCC---CCCCcCcE
Confidence 5568999999999999998764 47899999999999988753 589999999999 555676 56689999
Q ss_pred EeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcHHHHhc
Q 014624 330 LDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPRNIVEM 370 (421)
Q Consensus 330 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 370 (421)
|+|++|.|+.+|. .+++|+.|++++|.++.+|..+..+
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l 283 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHL 283 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGS
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhc
Confidence 9999999999988 6789999999999999887655443
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.4e-27 Score=216.91 Aligned_cols=220 Identities=22% Similarity=0.298 Sum_probs=135.2
Q ss_pred hhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCC
Q 014624 110 DSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLE 188 (421)
Q Consensus 110 ~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~ 188 (421)
..+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.+++ +..+++|++|++++|.++.++ ..++|+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 34445567777777777777663 466777777777777777765443 666777777777777666554 226677
Q ss_pred EEECCCCCCCCCccccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCCch-hhh-hccCCCCeeeccccc
Q 014624 189 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKALP-EAV-GKIHTLEVLSVRYNN 265 (421)
Q Consensus 189 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~-~~l-~~~~~L~~L~l~~n~ 265 (421)
+|++++|.+..++. ..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|.
T Consensus 103 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 77777776665432 124455566666655554422 3444555555555555555432 222 244555555555555
Q ss_pred CCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhc
Q 014624 266 IKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFR 345 (421)
Q Consensus 266 l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 345 (421)
++.++. ...+++|++|++++|.++. +|..+..+++|+.|++++|.++.+|..+.
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~-------------------------l~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 234 (317)
T 3o53_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAF-------------------------MGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (317)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCE-------------------------ECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred Cccccc-ccccccCCEEECCCCcCCc-------------------------chhhhcccCcccEEECcCCcccchhhHhh
Confidence 555432 2234555555555555544 44446667778888888888888887777
Q ss_pred CCCCCCEEEccCCCCCC
Q 014624 346 MLSRLRVLRVQENPLEV 362 (421)
Q Consensus 346 ~l~~L~~L~l~~n~~~~ 362 (421)
.+++|+.|++++|++.+
T Consensus 235 ~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCTTCCEEECTTCCCBH
T ss_pred cCCCCCEEEccCCCccC
Confidence 88888888888888873
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=4.9e-26 Score=209.95 Aligned_cols=202 Identities=27% Similarity=0.348 Sum_probs=167.3
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC---chhhcCCCCCcEEEccCCCCCCCchhhhCCCCCc
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV---PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLV 165 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~---~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 165 (421)
.+++++|+++++.+..+. +..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCccC--HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 468999999999887654 34578999999999999999865 5677789999999999999998888889999999
Q ss_pred EEECcCCCCCCCch--hhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCCC--CcchhcCCcCccEEEccc
Q 014624 166 YLDLRGNQISALPV--ALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDY 240 (421)
Q Consensus 166 ~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~ 240 (421)
+|++++|.++.++. .+..+++|++|++++|.+... +..+..+++|++|++++|.+.. .+..+..+++|+.|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 99999999987764 688899999999999988744 4567788889999998888775 566777788888888888
Q ss_pred CCCCCc-hhhhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCC
Q 014624 241 NRLKAL-PEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESV 292 (421)
Q Consensus 241 ~~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~ 292 (421)
|+++.+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|.++..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 888766 4567777888888888888877653 677788888888888887644
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=207.82 Aligned_cols=215 Identities=18% Similarity=0.282 Sum_probs=136.4
Q ss_pred CEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCC
Q 014624 119 VSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNN 196 (421)
Q Consensus 119 ~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 196 (421)
+..+++++.+... ...+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence 3344444444433 234455677888888888877664 467778888888888887775543 6677777777777776
Q ss_pred CCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCC-ccc-
Q 014624 197 LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLP-TTM- 273 (421)
Q Consensus 197 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~-~~l- 273 (421)
+..++. .++|+.|++++|.++.++. ..+++|+.|++++|+++.++. .+..+++|+.|++++|.++.++ ..+
T Consensus 92 l~~l~~----~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccccC----CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 665442 2556666666666554432 124455555555555554432 3444555555555555555432 222
Q ss_pred CCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEE
Q 014624 274 SSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVL 353 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 353 (421)
..+++|++|++++|.++.+ +. ...+++|++|++++|.++.+|..+..+++|+.|
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-------------------------~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-------------------------KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-------------------------EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred hccCcCCEEECCCCcCccc-------------------------cc-ccccccCCEEECCCCcCCcchhhhcccCcccEE
Confidence 2445555555555554433 22 234789999999999999999889999999999
Q ss_pred EccCCCCCCCcHH
Q 014624 354 RVQENPLEVPPRN 366 (421)
Q Consensus 354 ~l~~n~~~~~~~~ 366 (421)
++++|+++..+..
T Consensus 220 ~L~~N~l~~l~~~ 232 (317)
T 3o53_A 220 SLRNNKLVLIEKA 232 (317)
T ss_dssp ECTTSCCCEECTT
T ss_pred ECcCCcccchhhH
Confidence 9999999866543
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-25 Score=220.55 Aligned_cols=231 Identities=25% Similarity=0.321 Sum_probs=168.3
Q ss_pred CCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCC
Q 014624 116 SSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGS 194 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 194 (421)
++|++|++++|.+..+ +..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.++. .++|+.|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 3788888888888776 3577788888888888888775544 7778888888888887776553 27788888888
Q ss_pred CCCCCCccccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCCCCCc-hhhhh-ccCCCCeeecccccCCcCCc
Q 014624 195 NNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKAL-PEAVG-KIHTLEVLSVRYNNIKQLPT 271 (421)
Q Consensus 195 ~~l~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~l~-~~~~L~~L~l~~n~l~~l~~ 271 (421)
|.+..++. ..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.. +..+. .+++|+.|++++|.++.++.
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 88776653 2456788888888877765 34566778888888888888753 34443 67788888888888877643
Q ss_pred ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC--ccchhhcCCCC
Q 014624 272 TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR--VLPDSFRMLSR 349 (421)
Q Consensus 272 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~l~~ 349 (421)
...+++|++|++++|.++.++..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.++ .+|..+..++.
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred -cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 33578888888888888877776777777777777777 34456777777777777777777777 55666677777
Q ss_pred CCEEEcc
Q 014624 350 LRVLRVQ 356 (421)
Q Consensus 350 L~~L~l~ 356 (421)
|+.+++.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 7666665
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.7e-27 Score=215.85 Aligned_cols=242 Identities=20% Similarity=0.241 Sum_probs=152.3
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCc--Cchhhc-------CCCCCcEEEccCCCCC-CCchh
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA--VPATIG-------GLSSLKKLDLHANRII-ELPDS 157 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~l~-------~l~~L~~L~L~~~~i~-~l~~~ 157 (421)
..++|++|+++++.+ .+|..+... |++|++++|.+.. ++..+. ++++|++|++++|.++ .+|..
T Consensus 41 ~~~~L~~l~l~~n~l----~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE----ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT----CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc----ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 445667777776665 234433332 6666777766643 344333 5677777777777776 45554
Q ss_pred h--hCCCCCcEEECcCCCCCCCchhhcCC-----CCCCEEECCCCCCCCCc-cccCCCccccccccccccCCC---Ccch
Q 014624 158 I--GDLLSLVYLDLRGNQISALPVALSRL-----VRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEE---LPHT 226 (421)
Q Consensus 158 ~--~~l~~L~~L~l~~~~l~~l~~~~~~~-----~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~---~~~~ 226 (421)
+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|++..++ ..+..+++|++|++++|.+.. ++..
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4 66777777777777777666555444 67777777777776654 556666777777777766542 1222
Q ss_pred h--cCCcCccEEEcccCCCCCchh----hhhccCCCCeeecccccCCcCC--cccCCCCCCcEEECcCCCCCCCchhhhc
Q 014624 227 I--GQCSSLRELRVDYNRLKALPE----AVGKIHTLEVLSVRYNNIKQLP--TTMSSLSSLRELDVSFNELESVPESLCF 298 (421)
Q Consensus 227 ~--~~~~~L~~L~l~~~~l~~~~~----~l~~~~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 298 (421)
+ ..+++|++|++++|+++.++. .+..+++|+.|++++|.++..+ ..+..+++|++|++++|.++.+|
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip----- 269 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP----- 269 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-----
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-----
Confidence 2 556666777777666664332 2234566666666666666533 34445566666666666665543
Q ss_pred cCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCC
Q 014624 299 ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
..+. ++|++|++++|+|+.+|. +..+++|+.|++++|+++..
T Consensus 270 --------------------~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 --------------------KGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --------------------SSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred --------------------hhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 3333 678888888888888776 77888888888888888753
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.9e-24 Score=196.01 Aligned_cols=222 Identities=30% Similarity=0.422 Sum_probs=158.5
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC-chhhcCCCCCCEEECCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNN 196 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~ 196 (421)
++++++++.+..+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67788888888877543 468888888888888665 3577888888888888888766 5567778888888888886
Q ss_pred -CCCC-ccccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCCc-
Q 014624 197 -LSSL-PDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT- 271 (421)
Q Consensus 197 -l~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~- 271 (421)
+..+ +..+..+++|++|++++|.++.+ +..+..+++|++|++++|+++.++. .+..+++|++|++++|.++.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 6665 45566666777777777666655 3345556666666666666665543 24555566666666666555443
Q ss_pred ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCC
Q 014624 272 TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRL 350 (421)
Q Consensus 272 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L 350 (421)
.+..+++|++|++++|.++.+ .|..+..+++|+.|++++|.++.++. .+..+++|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE------------------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhcCccccCEEECCCCccccc------------------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 355555666666665555433 24567788999999999999998875 68999999
Q ss_pred CEEEccCCCCCCCcHH
Q 014624 351 RVLRVQENPLEVPPRN 366 (421)
Q Consensus 351 ~~L~l~~n~~~~~~~~ 366 (421)
+.|++++|++.+.+..
T Consensus 228 ~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CEEECCSSCEECSGGG
T ss_pred CEEeccCCCccCCCCc
Confidence 9999999999998754
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=5e-27 Score=229.15 Aligned_cols=326 Identities=21% Similarity=0.236 Sum_probs=232.1
Q ss_pred HhhhhHHHHHHhcccccccC----ccceeeecccC---CCCCccchHHhhhhhhh-ccCC-CCCcEEEcCCcccccc--c
Q 014624 38 CLLLTDFLILQLGSIIFRNK----VPIMIMCMCCV---GQDGEKLSLIKLASLIE-VSSK-KGTRDLNLQNKLMDNI--E 106 (421)
Q Consensus 38 ~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~--~ 106 (421)
+..+++|+.|+++++.+.+. ++..+.....+ ......+.......+.. +... ++|++|++++|.+... .
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 56677778888887777643 22221111111 11111122222222222 1111 2699999999987753 3
Q ss_pred ccchhhcCCCCCCEEEccCCcCCcC-ch----h-hcCCCCCcEEEccCCCCCC-----CchhhhCCCCCcEEECcCCCCC
Q 014624 107 WLPDSIGKLSSLVSLDLSENRIVAV-PA----T-IGGLSSLKKLDLHANRIIE-----LPDSIGDLLSLVYLDLRGNQIS 175 (421)
Q Consensus 107 ~l~~~~~~~~~L~~L~l~~~~l~~~-~~----~-l~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~l~~~~l~ 175 (421)
.++..+..+++|++|++++|.+... +. . ....++|++|++++|.++. ++..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 5677888999999999999988642 11 2 2346789999999998884 3456677899999999999877
Q ss_pred CCc-----hhh-cCCCCCCEEECCCCCCCC-----CccccCCCccccccccccccCCCC------cchhcCCcCccEEEc
Q 014624 176 ALP-----VAL-SRLVRLEELDLGSNNLSS-----LPDSIGSLISLKKLIVETNDLEEL------PHTIGQCSSLRELRV 238 (421)
Q Consensus 176 ~l~-----~~~-~~~~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~L~~L~l 238 (421)
... ..+ ...++|+.|++++|.+.. ++..+..+++|++|++++|.+... +.....+++|+.|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 431 112 235699999999998886 456677889999999999987742 122335889999999
Q ss_pred ccCCCCC-----chhhhhccCCCCeeecccccCCc-----CCccc-CCCCCCcEEECcCCCCCCC-----chhhhccCcc
Q 014624 239 DYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTM-SSLSSLRELDVSFNELESV-----PESLCFATTL 302 (421)
Q Consensus 239 ~~~~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l-~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~L 302 (421)
++|.++. ++..+..+++|++|++++|.++. +...+ ...++|++|++++|.++.. +..+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 9999986 66777889999999999998875 22222 2347999999999998853 5667778999
Q ss_pred cEEEccCCccCCCc---cchhhcC-CCCCcEEeCccCCCC-----ccchhhcCCCCCCEEEccCCCCCCC
Q 014624 303 VKMNIGNNFADLRA---LPRSIGN-LEMLEELDISNNQIR-----VLPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 303 ~~L~l~~~~~~~~~---~~~~~~~-l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
+.|++++|...... +...+.. .++|++|++++|.++ .++..+..+++|++|++++|+++..
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999999533221 2223332 679999999999999 6788889999999999999998743
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.1e-24 Score=195.78 Aligned_cols=215 Identities=27% Similarity=0.389 Sum_probs=165.4
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEECc
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLR 170 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~ 170 (421)
++++++++.+..+ |..+ .++|++|++++|.+..++ ..|..+++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~i---p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAV---PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSC---CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccC---CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 5667766555443 3332 467888888888888764 4678888888888888888765 5577788888888888
Q ss_pred CCC-CCCC-chhhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCCc
Q 014624 171 GNQ-ISAL-PVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKAL 246 (421)
Q Consensus 171 ~~~-l~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~~ 246 (421)
+|. ++.+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|+++.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 886 7766 55677888888888888888866 4557778888888888888887654 367788888888888888877
Q ss_pred hh-hhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCcc
Q 014624 247 PE-AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFA 312 (421)
Q Consensus 247 ~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~ 312 (421)
+. .+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 64 477788899999999888875 6778888889999999988887764 466777778888877743
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.4e-25 Score=207.32 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=173.1
Q ss_pred CcEEEcCCcccccccccchhhc-------CCCCCCEEEccCCcCCc-Cchhh--cCCCCCcEEEccCCCCCCCchhhhCC
Q 014624 92 TRDLNLQNKLMDNIEWLPDSIG-------KLSSLVSLDLSENRIVA-VPATI--GGLSSLKKLDLHANRIIELPDSIGDL 161 (421)
Q Consensus 92 L~~L~l~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~~~l~~-~~~~l--~~l~~L~~L~L~~~~i~~l~~~~~~l 161 (421)
+++|+++++.+... .++..+. ++++|++|++++|.+.. +|..+ ..+++|++|++++|.++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 88899998877554 3455554 78999999999999984 56654 89999999999999999888777766
Q ss_pred -----CCCcEEECcCCCCCCCc-hhhcCCCCCCEEECCCCCCCC---Ccccc--CCCccccccccccccCCCCc----ch
Q 014624 162 -----LSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSS---LPDSI--GSLISLKKLIVETNDLEELP----HT 226 (421)
Q Consensus 162 -----~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~---~~~~~--~~l~~L~~L~l~~n~~~~~~----~~ 226 (421)
++|++|++++|.++.++ ..+..+++|++|++++|++.. ++..+ ..+++|++|++++|.++.++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 99999999999999876 678999999999999998763 23334 78999999999999998543 23
Q ss_pred hcCCcCccEEEcccCCCCCch--hhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccE
Q 014624 227 IGQCSSLRELRVDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVK 304 (421)
Q Consensus 227 ~~~~~~L~~L~l~~~~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 304 (421)
+..+++|+.|++++|+++..+ ..+..+++|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|+.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 357789999999999998754 345667899999999999999988776 899999999999987754 433444444
Q ss_pred EEccCC
Q 014624 305 MNIGNN 310 (421)
Q Consensus 305 L~l~~~ 310 (421)
|++++|
T Consensus 301 L~L~~N 306 (312)
T 1wwl_A 301 LSLKGN 306 (312)
T ss_dssp EECTTC
T ss_pred EeccCC
Confidence 444433
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=202.56 Aligned_cols=222 Identities=29% Similarity=0.423 Sum_probs=194.9
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 166 (421)
.++++.|++++|.+..+. +..|.++++|++|++++|.+..++ ..|.++++|++|++++|.++.++. .+..+++|++
T Consensus 63 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CTTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 468999999999888765 578899999999999999999874 689999999999999999998875 6889999999
Q ss_pred EECcCCCCCCCch-hhcCCCCCCEEECCCC-CCCCCc-cccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 167 LDLRGNQISALPV-ALSRLVRLEELDLGSN-NLSSLP-DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 167 L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
|++++|.++.++. .+..+++|+.|++++| .+..++ ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 9999999998765 6889999999999995 555554 35788999999999999999886 478899999999999999
Q ss_pred CCc-hhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccC
Q 014624 244 KAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFAD 313 (421)
Q Consensus 244 ~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~ 313 (421)
+.+ +..+..+++|+.|++++|.++.+ +..+..+++|++|+|++|+++.++. .+..+++|+.|++++|...
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 977 56788999999999999999986 4688999999999999999998765 4567889999999988543
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2e-23 Score=190.58 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=121.0
Q ss_pred CCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEEC
Q 014624 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDL 192 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 192 (421)
+++++++++++++.++.+|..+. +++++|++++|.++.++ ..+..+++|++|++++|.++.++..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------------ 73 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------------
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------------
Confidence 44455555555555554443322 34455555555444332 2344444444444444444433221
Q ss_pred CCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch-hhhhccCCCCeeecccccCCcCCc
Q 014624 193 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLPT 271 (421)
Q Consensus 193 ~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~ 271 (421)
..+++|+.|++++|.+..++..+..+++|+.|++++|+++.++ ..+..+++|++|++++|.++.++.
T Consensus 74 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 ------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp ------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 2333444444444444444444444555555555555555554 345556666666666666666543
Q ss_pred -ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCC
Q 014624 272 -TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRL 350 (421)
Q Consensus 272 -~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L 350 (421)
.+..+++|+.|++++|+++.++. ..+..+++|+.|+|++|+++.+|..+..+++|
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~------------------------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L 197 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPA------------------------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCT------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred hhcccccCCCEEECCCCcCCccCH------------------------HHhcCcCCCCEEECCCCcCCccChhhcccccC
Confidence 45666777777777776665542 23567899999999999999999988899999
Q ss_pred CEEEccCCCCCCCcH
Q 014624 351 RVLRVQENPLEVPPR 365 (421)
Q Consensus 351 ~~L~l~~n~~~~~~~ 365 (421)
+.+++++||+.|.|.
T Consensus 198 ~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 198 PFAFLHGNPWLCNCE 212 (290)
T ss_dssp SEEECCSCCBCCSGG
T ss_pred CeEEeCCCCccCcCc
Confidence 999999999999884
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.1e-23 Score=202.90 Aligned_cols=222 Identities=28% Similarity=0.418 Sum_probs=192.5
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 166 (421)
.+++++|++++|.+..+. +..|.++++|++|++++|.+..+ +..|.++++|++|++++|.++.++. .+..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 468999999999888765 67899999999999999999987 4689999999999999999998875 4788999999
Q ss_pred EECcCCCCCCCch-hhcCCCCCCEEECCCC-CCCCCc-cccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCC
Q 014624 167 LDLRGNQISALPV-ALSRLVRLEELDLGSN-NLSSLP-DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 167 L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l 243 (421)
|++++|.++.++. .+..+++|+.|++++| .+..++ ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 9999999998765 6889999999999994 555554 35788999999999999999885 578889999999999999
Q ss_pred CCc-hhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccC
Q 014624 244 KAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFAD 313 (421)
Q Consensus 244 ~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~ 313 (421)
+.+ +..+..+++|+.|++++|.++.+ +..+.++++|+.|+|++|+++.++. .+..+++|+.|++++|...
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 976 56788999999999999999986 5678999999999999999998765 4567888888988888533
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=7e-24 Score=199.55 Aligned_cols=253 Identities=21% Similarity=0.266 Sum_probs=212.2
Q ss_pred CCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc-hhhcCCCCCCEEE
Q 014624 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELD 191 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ 191 (421)
.|+.....+++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+..+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45556678889999999987554 589999999999998765 7889999999999999999774 5688999999999
Q ss_pred CCCCCCCCCccc-cCCCccccccccccccCCCCcc--hhcCCcCccEEEcccC-CCCCch-hhhhccCCCCeeecccccC
Q 014624 192 LGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPH--TIGQCSSLRELRVDYN-RLKALP-EAVGKIHTLEVLSVRYNNI 266 (421)
Q Consensus 192 l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~~-~l~~~~-~~l~~~~~L~~L~l~~n~l 266 (421)
+++|.++.++.. +..+++|++|++++|.+..++. .+..+++|+.|++++| .++.++ ..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999999988765 7899999999999999998876 6888999999999998 477664 5678899999999999999
Q ss_pred CcC-CcccCCCCCCcEEECcCCCCCCCchhh-hccCcccEEEccCCccCCCccc--hhhcCCCCCcEEeCccCCCC----
Q 014624 267 KQL-PTTMSSLSSLRELDVSFNELESVPESL-CFATTLVKMNIGNNFADLRALP--RSIGNLEMLEELDISNNQIR---- 338 (421)
Q Consensus 267 ~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~---- 338 (421)
+.+ +..+..+++|++|++++|.++.++..+ ..+++|+.|++++|........ ........++.++++++.++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 985 788999999999999999999887654 4589999999999953322111 11234667888999888887
Q ss_pred -ccchhhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 339 -VLPDSFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 339 -~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
.+|..+..+++|+.|++++|.++..+..++
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 477889999999999999999998887653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4e-24 Score=209.37 Aligned_cols=217 Identities=18% Similarity=0.279 Sum_probs=189.9
Q ss_pred CCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCcccccccc
Q 014624 137 GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIV 215 (421)
Q Consensus 137 ~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l 215 (421)
.+++|++|++++|.++.++ ..+..+++|++|++++|.++..+. +..+++|++|++++|.+..++. .++|+.|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3458999999999999775 588999999999999999986654 8889999999999999887653 388999999
Q ss_pred ccccCCCCcchhcCCcCccEEEcccCCCCCch-hhhhccCCCCeeecccccCCcC-CcccC-CCCCCcEEECcCCCCCCC
Q 014624 216 ETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQL-PTTMS-SLSSLRELDVSFNELESV 292 (421)
Q Consensus 216 ~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~l-~~~l~-~~~~L~~L~L~~n~l~~~ 292 (421)
++|.++.++. ..+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+ |..+. .+++|++|+|++|.++.+
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9999997754 35689999999999999774 4678899999999999999984 55554 789999999999999987
Q ss_pred chhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCC
Q 014624 293 PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
+. ...+++|+.|++++| .+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|++.|.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cc-cccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 54 346999999999999 566788889999999999999999999999999999999999999999854
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.6e-23 Score=187.08 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=139.3
Q ss_pred EEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCCC
Q 014624 120 SLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNL 197 (421)
Q Consensus 120 ~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l 197 (421)
.++..+..+..+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45566666666665442 467888888887776654 66777788888888877776544 566677777777777776
Q ss_pred CCCc-cccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCC
Q 014624 198 SSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 275 (421)
Q Consensus 198 ~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~ 275 (421)
..++ ..+..+++|++|++++|.+..++. .+..+++|+.|++++|.++.+. +|..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------l~~~~~~ 147 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---------------------LPEYFSN 147 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---------------------CCGGGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---------------------Cchhhcc
Confidence 6543 345555555666555555554432 3444444444444444444310 3444555
Q ss_pred CCCCcEEECcCCCCCCCc-hhhhccCccc----EEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCC
Q 014624 276 LSSLRELDVSFNELESVP-ESLCFATTLV----KMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSR 349 (421)
Q Consensus 276 ~~~L~~L~L~~n~l~~~~-~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~ 349 (421)
+++|++|++++|+++.++ ..+..+++|+ .|++++| .+..++.......+|+.|++++|.++.+|. .+..+++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC--cccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 555555555555555432 2333333333 5555555 233444434444589999999999998886 4688999
Q ss_pred CCEEEccCCCCCCCcHHH
Q 014624 350 LRVLRVQENPLEVPPRNI 367 (421)
Q Consensus 350 L~~L~l~~n~~~~~~~~~ 367 (421)
|+.|++++|+++|.|+.+
T Consensus 226 L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEEECCSSCBCCCTTTT
T ss_pred ccEEEccCCcccccCCch
Confidence 999999999999988643
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=7e-26 Score=221.03 Aligned_cols=276 Identities=22% Similarity=0.246 Sum_probs=185.9
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCC----CCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCCCC-c
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLS----SLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIEL-P 155 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~~l-~ 155 (421)
+...++|++|++++|.+.+.. +......++ +|++|++++|.+.. ++..+..+++|++|++++|.++.. +
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHH-HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHH-HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 345677888888887765421 111222333 68888888888773 356777888888888888877632 1
Q ss_pred hhh-----hCCCCCcEEECcCCCCCC-----CchhhcCCCCCCEEECCCCCCCCCc-cccC-----CCcccccccccccc
Q 014624 156 DSI-----GDLLSLVYLDLRGNQISA-----LPVALSRLVRLEELDLGSNNLSSLP-DSIG-----SLISLKKLIVETND 219 (421)
Q Consensus 156 ~~~-----~~l~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~-----~l~~L~~L~l~~n~ 219 (421)
..+ ...++|++|++++|.++. ++..+..+++|++|++++|.+.... ..+. ..++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 111 124578888888887774 3445666788888888888766321 1111 24578888888888
Q ss_pred CCC-----CcchhcCCcCccEEEcccCCCCCch-----h-hhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEE
Q 014624 220 LEE-----LPHTIGQCSSLRELRVDYNRLKALP-----E-AVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELD 283 (421)
Q Consensus 220 ~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~-----~-~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~ 283 (421)
++. ++..+..+++|++|++++|+++... . ....+++|++|++++|.++. ++..+..+++|++|+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 775 3556667788888888888776431 2 22246788888888888876 566677788888888
Q ss_pred CcCCCCCCCc-hhhhc-----cCcccEEEccCCccCCC---ccchhhcCCCCCcEEeCccCCCCccc-h----hhcC-CC
Q 014624 284 VSFNELESVP-ESLCF-----ATTLVKMNIGNNFADLR---ALPRSIGNLEMLEELDISNNQIRVLP-D----SFRM-LS 348 (421)
Q Consensus 284 L~~n~l~~~~-~~~~~-----~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~l~-~----~~~~-l~ 348 (421)
+++|.+++.. ..+.. .++|+.|++++|..... .++..+..+++|++|++++|.++... . .+.. .+
T Consensus 291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence 8888876322 12222 26888888888853322 25666777889999999999888542 2 2222 67
Q ss_pred CCCEEEccCCCCCC
Q 014624 349 RLRVLRVQENPLEV 362 (421)
Q Consensus 349 ~L~~L~l~~n~~~~ 362 (421)
+|+.|++++|+++.
T Consensus 371 ~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 371 VLRVLWLADCDVSD 384 (461)
T ss_dssp CCCEEECTTSCCCH
T ss_pred ceEEEECCCCCCCh
Confidence 89999999998773
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=9.9e-23 Score=187.76 Aligned_cols=210 Identities=22% Similarity=0.382 Sum_probs=165.0
Q ss_pred EccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCc
Q 014624 122 DLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP 201 (421)
Q Consensus 122 ~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~ 201 (421)
.+..+.+.+.. ....+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 34444454432 2456789999999999998886 57889999999999999998876 888999999999999988875
Q ss_pred cccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcE
Q 014624 202 DSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRE 281 (421)
Q Consensus 202 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 281 (421)
.+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|+.|++++|.++.++. +..+++|++
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence 57888899999999998888754 7888899999999998888765 7788889999999998888766 888888999
Q ss_pred EECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch
Q 014624 282 LDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD 342 (421)
Q Consensus 282 L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 342 (421)
|++++|.++.++. +..+++|+.|++++| .+..++ .+..+++|+.|++++|.++..|.
T Consensus 178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N--~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 178 LKADDNKISDISP-LASLPNLIEVHLKNN--QISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECTTS--CCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred EECCCCccCcChh-hcCCCCCCEEEccCC--ccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 9999988887754 566677777777777 333444 25667777777777777666554
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.9e-22 Score=185.84 Aligned_cols=195 Identities=22% Similarity=0.392 Sum_probs=153.1
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEE
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYL 167 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 167 (421)
.+++|++|+++++.+..+. .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 3458888888888776643 46678888999998888888766 888888899999888888774 57788888888
Q ss_pred ECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch
Q 014624 168 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 168 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 888888888764 7788888888888888887755 6777888888888888777655 777788888888888887775
Q ss_pred hhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCc
Q 014624 248 EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVP 293 (421)
Q Consensus 248 ~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~ 293 (421)
. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+++..+
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCC
Confidence 4 667778888888888777775 3677778888888887776554
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.1e-24 Score=205.59 Aligned_cols=248 Identities=19% Similarity=0.203 Sum_probs=144.1
Q ss_pred cccccchhhcCCCCCCEEEccCCcCCcC-----chhhcCCCCCcEEEccCCCCCC----Cchhh-------hCCCCCcEE
Q 014624 104 NIEWLPDSIGKLSSLVSLDLSENRIVAV-----PATIGGLSSLKKLDLHANRIIE----LPDSI-------GDLLSLVYL 167 (421)
Q Consensus 104 ~~~~l~~~~~~~~~L~~L~l~~~~l~~~-----~~~l~~l~~L~~L~L~~~~i~~----l~~~~-------~~l~~L~~L 167 (421)
++..++..+..+++|++|++++|.+... +..+..+++|++|++++|.+.. +|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3444556677777788888888777642 2346677788888887765542 23333 567778888
Q ss_pred ECcCCCCCC-----CchhhcCCCCCCEEECCCCCCCCC-----ccccCCCccccccccccccCCCCcchhcCCcCccEEE
Q 014624 168 DLRGNQISA-----LPVALSRLVRLEELDLGSNNLSSL-----PDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELR 237 (421)
Q Consensus 168 ~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 237 (421)
++++|.++. ++..+..+++|++|++++|.+... +..+..+ . .+.+. ...++|++|+
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l---~-----~~~~~------~~~~~L~~L~ 165 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---A-----VNKKA------KNAPPLRSII 165 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---H-----HHHHH------HTCCCCCEEE
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH---h-----hhhhc------ccCCCCcEEE
Confidence 888777765 455667777777777777766521 1111111 0 00000 0004455555
Q ss_pred cccCCCC--Cch---hhhhccCCCCeeecccccCCc------CCcccCCCCCCcEEECcCCCC-----CCCchhhhccCc
Q 014624 238 VDYNRLK--ALP---EAVGKIHTLEVLSVRYNNIKQ------LPTTMSSLSSLRELDVSFNEL-----ESVPESLCFATT 301 (421)
Q Consensus 238 l~~~~l~--~~~---~~l~~~~~L~~L~l~~n~l~~------l~~~l~~~~~L~~L~L~~n~l-----~~~~~~~~~~~~ 301 (421)
+++|+++ .++ ..+..+++|++|++++|.++. ++..+..+++|++|+|++|.+ ..++..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 5555544 222 233444555555555555541 122445555555555555555 233444555555
Q ss_pred ccEEEccCCccCC---Cccchhhc--CCCCCcEEeCccCCCCc-----cchhh-cCCCCCCEEEccCCCCCCCcH
Q 014624 302 LVKMNIGNNFADL---RALPRSIG--NLEMLEELDISNNQIRV-----LPDSF-RMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 302 L~~L~l~~~~~~~---~~~~~~~~--~l~~L~~L~L~~n~l~~-----l~~~~-~~l~~L~~L~l~~n~~~~~~~ 365 (421)
|+.|++++|.... ..++..+. .+++|+.|+|++|.++. +|..+ ..+++|+.|++++|+++....
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5555555553211 12345553 37888888888888886 77766 557888888888888886653
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=8.1e-22 Score=178.25 Aligned_cols=201 Identities=35% Similarity=0.588 Sum_probs=128.7
Q ss_pred CCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCccc-cCCCcccccccccc
Q 014624 140 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVET 217 (421)
Q Consensus 140 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~ 217 (421)
..++++++++.++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677777777776665432 567777777777766654 466667777777777766665533 34556666666666
Q ss_pred ccCCCCcc-hhcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCCch
Q 014624 218 NDLEELPH-TIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPE 294 (421)
Q Consensus 218 n~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~ 294 (421)
|.+..++. .+..+++|+.|++++|+++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP- 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-
Confidence 65555432 23445555555555555554432 23445555555555555555432 2445555555555555544432
Q ss_pred hhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 295 SLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.|.|..
T Consensus 174 -----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 -----------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred -----------------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 1346788999999999999998886 588899999999999999998853
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1e-21 Score=179.25 Aligned_cols=200 Identities=27% Similarity=0.362 Sum_probs=167.1
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchhhhCCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDSIGDLLS 163 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 163 (421)
.+..++++++++++++.+..+ |..+. +++++|++++|.+..+ +..+.++++|++|++++|.++.++.. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i---p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL---PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC---CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred cccccCCccEEECCCCCCCcC---CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence 356788999999999877654 44442 6899999999999987 56899999999999999999987654 78999
Q ss_pred CcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCcch-hcCCcCccEEEcccC
Q 014624 164 LVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYN 241 (421)
Q Consensus 164 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~ 241 (421)
|++|++++|.++.+|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999999999988889999999999999999886 5578888899999988888877543 567788888888888
Q ss_pred CCCCchhh-hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCC
Q 014624 242 RLKALPEA-VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 242 ~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~ 290 (421)
+++.++.. +..+++|+.|++++|.++.+|..+...++|+.|++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 88877753 46678888888888888888877777778888888888765
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.3e-21 Score=198.16 Aligned_cols=131 Identities=27% Similarity=0.340 Sum_probs=116.6
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcE
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVY 166 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 166 (421)
.+++++|++++|.+..+. +..|.++++|++|++++|.++.++ .+|.++++|++|+|++|+++.+|. .|..+++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 358999999999888765 568999999999999999999884 579999999999999999998875 6889999999
Q ss_pred EECcCCCCCCCch-hhcCCCCCCEEECCCCCCCC--CccccCCCccccccccccccCC
Q 014624 167 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSS--LPDSIGSLISLKKLIVETNDLE 221 (421)
Q Consensus 167 L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~ 221 (421)
|++++|+++.++. .+..+++|++|++++|.+.. .|..+..++.|++|++++|.++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999999998875 58899999999999999985 4677888999999999888765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.7e-22 Score=179.90 Aligned_cols=196 Identities=28% Similarity=0.362 Sum_probs=159.6
Q ss_pred EEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcC
Q 014624 94 DLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRG 171 (421)
Q Consensus 94 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~ 171 (421)
..+..+.. +..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.++.++. .+..+++|++|++++
T Consensus 11 ~~~c~~~~---l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELN---FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSC---CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCC---ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 34444433 333455443 579999999999998754 88999999999999999997754 788999999999999
Q ss_pred CCCCCCc-hhhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccccCCC--CcchhcCCcCccEEEcccCCCCCch
Q 014624 172 NQISALP-VALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 172 ~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. ++..+..+++|+.|++++|+++.++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 9999765 568899999999999999997754 58899999999999999986 5788999999999999999998765
Q ss_pred -hhhhccCCCC----eeecccccCCcCCcccCCCCCCcEEECcCCCCCCCch
Q 014624 248 -EAVGKIHTLE----VLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPE 294 (421)
Q Consensus 248 -~~l~~~~~L~----~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 294 (421)
..+..+.+|+ .|++++|.++.++.......+|++|++++|.++.++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH
Confidence 4555555565 7888888888876655555688888888888877654
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.5e-21 Score=173.20 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=122.8
Q ss_pred CCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCC-CCCCch-hhcCCCCCCEEECCC-CCCCCCc-c
Q 014624 128 IVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQ-ISALPV-ALSRLVRLEELDLGS-NNLSSLP-D 202 (421)
Q Consensus 128 l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~-l~~l~~-~~~~~~~L~~L~l~~-~~l~~~~-~ 202 (421)
++.+|. +. ++|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.+..++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 32 367777777777776654 56677777777777775 666654 556667777777766 6666554 2
Q ss_pred ccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccc-cCCcCCc-ccCCCCCCc
Q 014624 203 SIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYN-NIKQLPT-TMSSLSSLR 280 (421)
Q Consensus 203 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n-~l~~l~~-~l~~~~~L~ 280 (421)
.+..+++|+.|++++|.++.++. +..+++|+ .|+.|++++| .++.++. .+.++++|+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcce
Confidence 34455555555555555555443 44444444 0115555555 4444432 345555555
Q ss_pred -EEECcCCCCCCCchhhhccCcccEEEccCCccCCCcc-chhhcCC-CCCcEEeCccCCCCccchhhcCCCCCCEEEccC
Q 014624 281 -ELDVSFNELESVPESLCFATTLVKMNIGNNFADLRAL-PRSIGNL-EMLEELDISNNQIRVLPDSFRMLSRLRVLRVQE 357 (421)
Q Consensus 281 -~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~ 357 (421)
+|++++|+++.++......++|+.|++++|.. +..+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.+
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~-l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTCTT-CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCC-cccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 55555555555444333335555555555520 2233 2456777 8999999999999988875 678899999887
Q ss_pred CC
Q 014624 358 NP 359 (421)
Q Consensus 358 n~ 359 (421)
+.
T Consensus 236 ~~ 237 (239)
T 2xwt_C 236 TW 237 (239)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-20 Score=167.88 Aligned_cols=194 Identities=33% Similarity=0.530 Sum_probs=109.1
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCCCCchh-hhCCCCCcEEE
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRIIELPDS-IGDLLSLVYLD 168 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~ 168 (421)
+.+.++++++.+..+ |..+. +++++|++++|.+..++. .|.++++|++|++++|.++.++.. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~i---p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI---PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSC---CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCcc---CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 456667666555443 33222 456777777776666643 566667777777777766666543 35566777777
Q ss_pred CcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCC
Q 014624 169 LRGNQISALPV-ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKA 245 (421)
Q Consensus 169 l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~ 245 (421)
+++|.++.++. .+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77766666553 3455666666666666666553 2344555555555555555544332 4445555555555555554
Q ss_pred chh-hhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCC
Q 014624 246 LPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNEL 289 (421)
Q Consensus 246 ~~~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l 289 (421)
++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 442 24444555555555555555432 344455555555555544
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=172.53 Aligned_cols=192 Identities=18% Similarity=0.264 Sum_probs=147.0
Q ss_pred CCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCC-CCCCch-hhhCCCCCcEEECcC-CCCCCCch-hhcCCCCCCEE
Q 014624 116 SSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANR-IIELPD-SIGDLLSLVYLDLRG-NQISALPV-ALSRLVRLEEL 190 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~-i~~l~~-~~~~l~~L~~L~l~~-~~l~~l~~-~~~~~~~L~~L 190 (421)
++|++|++++|.++.++. .|.++++|++|++++|. ++.++. .+..+++|++|++++ |.++.++. .+..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888888887754 67788888888888886 777654 677888888888887 88887764 57778888888
Q ss_pred ECCCCCCCCCccccCCCcccc---ccccccc-cCCCCcc-hhcCCcCcc-EEEcccCCCCCchhhhhccCCCCeeecccc
Q 014624 191 DLGSNNLSSLPDSIGSLISLK---KLIVETN-DLEELPH-TIGQCSSLR-ELRVDYNRLKALPEAVGKIHTLEVLSVRYN 264 (421)
Q Consensus 191 ~l~~~~l~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~-~~~~~~~L~-~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n 264 (421)
++++|.+..+|. +..+++|+ .|++++| .++.++. .+..+++|+ .|++++|+++.++......++|+.|++++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 888888888776 77777777 8888888 7776654 477788888 888888888877765444478888999888
Q ss_pred c-CCcCC-cccCCC-CCCcEEECcCCCCCCCchhhhccCcccEEEccCC
Q 014624 265 N-IKQLP-TTMSSL-SSLRELDVSFNELESVPESLCFATTLVKMNIGNN 310 (421)
Q Consensus 265 ~-l~~l~-~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~ 310 (421)
. ++.++ ..+.++ ++|+.|++++|+++.+|.. .+++|+.|.+.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 88875 567788 8899999998888877653 3455555555544
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.3e-22 Score=204.12 Aligned_cols=275 Identities=16% Similarity=0.121 Sum_probs=136.6
Q ss_pred CCCCcEEEcCCccccc--ccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCC----CCchhhhCCC
Q 014624 89 KKGTRDLNLQNKLMDN--IEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRII----ELPDSIGDLL 162 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~----~l~~~~~~l~ 162 (421)
.++|++|+++++.+.. ...++..+..+++|++|++++|.+..++..+.++++|++|+++..... ..+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 4455555555554431 122333444555555555555555554444555555555555432111 1112223334
Q ss_pred CCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCC--CccccCCCcccccccccc-----------------------
Q 014624 163 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSS--LPDSIGSLISLKKLIVET----------------------- 217 (421)
Q Consensus 163 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~----------------------- 217 (421)
+|+.|+++++....+|..+..+++|++|++++|.+.. +...+..+++|+.|++.+
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 4444444443333444445555666666666665431 112234444444444441
Q ss_pred ------------ccCCC--CcchhcCCcCccEEEcccCCCCCc-hhhhh-ccCCCCeeecc----cccCCcCC------c
Q 014624 218 ------------NDLEE--LPHTIGQCSSLRELRVDYNRLKAL-PEAVG-KIHTLEVLSVR----YNNIKQLP------T 271 (421)
Q Consensus 218 ------------n~~~~--~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~-~~~~L~~L~l~----~n~l~~l~------~ 271 (421)
+.++. +......+++|++|+++.+.++.. ...+. .+++|+.|+++ .+.++..| .
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 12221 111122344555555544444421 12222 25556666654 33444322 2
Q ss_pred ccCCCCCCcEEECcCCC--CCC-Cchhh-hccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCc--cchhhc
Q 014624 272 TMSSLSSLRELDVSFNE--LES-VPESL-CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV--LPDSFR 345 (421)
Q Consensus 272 ~l~~~~~L~~L~L~~n~--l~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~ 345 (421)
.+.++++|++|++++|. +++ ....+ ..+++|+.|++++|......++..+..+++|+.|+|++|.++. ++....
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 24456666777665433 331 11222 2367777777777754333455566777888888888888763 444556
Q ss_pred CCCCCCEEEccCCCCCCC
Q 014624 346 MLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 346 ~l~~L~~L~l~~n~~~~~ 363 (421)
.+++|+.|++++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 778888888888887654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.8e-22 Score=189.18 Aligned_cols=247 Identities=20% Similarity=0.252 Sum_probs=130.4
Q ss_pred EEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-----hhhcCCC-CCcEEEccCCCCCCC-chhhhCC-----C
Q 014624 95 LNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-----ATIGGLS-SLKKLDLHANRIIEL-PDSIGDL-----L 162 (421)
Q Consensus 95 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-----~~l~~l~-~L~~L~L~~~~i~~l-~~~~~~l-----~ 162 (421)
+.++.+.+.+. +|..+...++|++|++++|.+...+ ..+..++ +|++|++++|.++.. +..+..+ +
T Consensus 3 ~~ls~n~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNP--VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCH--HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHH--HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 34555544442 3445555555777777777776553 4566676 777777777777643 2333332 7
Q ss_pred CCcEEECcCCCCCCCch-----hhcCC-CCCCEEECCCCCCCCCcc-----ccCC-CccccccccccccCCC-----Ccc
Q 014624 163 SLVYLDLRGNQISALPV-----ALSRL-VRLEELDLGSNNLSSLPD-----SIGS-LISLKKLIVETNDLEE-----LPH 225 (421)
Q Consensus 163 ~L~~L~l~~~~l~~l~~-----~~~~~-~~L~~L~l~~~~l~~~~~-----~~~~-l~~L~~L~l~~n~~~~-----~~~ 225 (421)
+|++|++++|.++..+. .+..+ ++|+.|++++|.+...+. .+.. .++|++|++++|.++. ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 77777777777664332 23444 677777777776654321 1222 2345555555554441 112
Q ss_pred hhcCCc-CccEEEcccCCCCCch-----hhhhcc-CCCCeeecccccCCc-----CCcccCC-CCCCcEEECcCCCCCCC
Q 014624 226 TIGQCS-SLRELRVDYNRLKALP-----EAVGKI-HTLEVLSVRYNNIKQ-----LPTTMSS-LSSLRELDVSFNELESV 292 (421)
Q Consensus 226 ~~~~~~-~L~~L~l~~~~l~~~~-----~~l~~~-~~L~~L~l~~n~l~~-----l~~~l~~-~~~L~~L~L~~n~l~~~ 292 (421)
.+...+ +|+.|++++|+++... ..+..+ ++|++|++++|.++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 222332 4555555555444221 122222 244444444444443 2222222 22444444444444433
Q ss_pred chhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCc--------cchhhcCCCCCCEEEccCCCCCCC
Q 014624 293 PESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV--------LPDSFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~l~~n~~~~~ 363 (421)
+. ..+...+..+++|+.|++++|.++. ++..+..+++|+.|++++|++...
T Consensus 241 ~~--------------------~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SL--------------------ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CH--------------------HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HH--------------------HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 11 1223445667778888888887443 333456777788888888887654
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=4.7e-21 Score=173.40 Aligned_cols=221 Identities=29% Similarity=0.418 Sum_probs=128.9
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECc
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLR 170 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~ 170 (421)
.+..+++.++.+.+.. ....+++|++|+++++.+..++ .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~----~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV----TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE----CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc----ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECC
Confidence 3444555555444432 3446677888888888777664 366778888888888877776 356777788888888
Q ss_pred CCCCCCCch-hhcCCCCCCEEECCCCCCCCCccc-cCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCCch
Q 014624 171 GNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 171 ~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~ 247 (421)
+|.++.++. .+..+++|++|++++|++..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|+++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 877776654 356677777777777777665432 45555566666655555544332 344455555555555554443
Q ss_pred h-hhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCC
Q 014624 248 E-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLE 325 (421)
Q Consensus 248 ~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 325 (421)
. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+. +.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------------------------~~~~ 222 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------------------------CTCP 222 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------------------------CCTT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------------------------ccCc
Confidence 2 23444444444444444444332 2344444444444444332 3345
Q ss_pred CCcEEeCccCCCC-ccchhhcCCC
Q 014624 326 MLEELDISNNQIR-VLPDSFRMLS 348 (421)
Q Consensus 326 ~L~~L~L~~n~l~-~l~~~~~~l~ 348 (421)
+|+.|++..|.++ .+|.+++.++
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHHHHhCCCcccCcccccC
Confidence 6666777766665 4565555443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.3e-20 Score=170.55 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=181.3
Q ss_pred hhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCC
Q 014624 39 LLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSL 118 (421)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 118 (421)
..+..+..++++...+.+... ...+++|+.|+++++.+..+. .+..+++|
T Consensus 16 ~~~~~l~~l~l~~~~~~~~~~--------------------------~~~l~~L~~L~l~~~~i~~~~----~l~~l~~L 65 (272)
T 3rfs_A 16 DAFAETIKANLKKKSVTDAVT--------------------------QNELNSIDQIIANNSDIKSVQ----GIQYLPNV 65 (272)
T ss_dssp HHHHHHHHHHHTCSCTTSEEC--------------------------HHHHTTCCEEECTTSCCCCCT----TGGGCTTC
T ss_pred chHHHHHHHHhcCcccccccc--------------------------cccccceeeeeeCCCCccccc----ccccCCCC
Confidence 445677777777665544322 235668999999998877654 57789999
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 196 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 196 (421)
++|++++|.+..++ .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 66 ~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 66 RYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp CEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 99999999998874 68899999999999999997765 46889999999999999998765 47889999999999999
Q ss_pred CCCCccc-cCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCCccc
Q 014624 197 LSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPTTM 273 (421)
Q Consensus 197 l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~l 273 (421)
+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|+++.++. .+..+++|+.|++++|.+.
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 218 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 218 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------
T ss_pred cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------
Confidence 9987644 67899999999999999987654 6789999999999999998764 4688999999999999765
Q ss_pred CCCCCCcEEECcCCCCC-CCchhh
Q 014624 274 SSLSSLRELDVSFNELE-SVPESL 296 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~-~~~~~~ 296 (421)
+.+++|+.|++..|.++ .+|..+
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred ccCcHHHHHHHHHHhCCCcccCcc
Confidence 45678888888888776 445444
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.3e-21 Score=182.73 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=119.1
Q ss_pred CCCcEEEcCCcccccccccchhhcCC--CCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCC--CchhhhCCCCCc
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKL--SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE--LPDSIGDLLSLV 165 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~ 165 (421)
..+++++++++.+. +..+..+ +.++.|++++|.+...+..+..+++|++|++++|.++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 45788888876554 2344555 78888888888877665556678888888888887763 566677788888
Q ss_pred EEECcCCCCC-CCchhhcCCCCCCEEECCCC-CCCC--CccccCCCccccccccccc-cCCC--CcchhcCCc-CccEEE
Q 014624 166 YLDLRGNQIS-ALPVALSRLVRLEELDLGSN-NLSS--LPDSIGSLISLKKLIVETN-DLEE--LPHTIGQCS-SLRELR 237 (421)
Q Consensus 166 ~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~l~~L~~L~l~~n-~~~~--~~~~~~~~~-~L~~L~ 237 (421)
+|++++|.++ ..+..+..+++|++|++++| .++. ++..+..+++|++|++++| .++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888776 44556677788888888877 4552 3444455555666666555 4442 333444555 555555
Q ss_pred cccCC--CC--CchhhhhccCCCCeeeccccc-CCc-CCcccCCCCCCcEEECcCC
Q 014624 238 VDYNR--LK--ALPEAVGKIHTLEVLSVRYNN-IKQ-LPTTMSSLSSLRELDVSFN 287 (421)
Q Consensus 238 l~~~~--l~--~~~~~l~~~~~L~~L~l~~n~-l~~-l~~~l~~~~~L~~L~L~~n 287 (421)
+++|. ++ .++..+..+++|+.|++++|. ++. .+..+..+++|++|++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55552 22 233444445555555555554 332 2334444555555555555
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.5e-22 Score=190.28 Aligned_cols=254 Identities=21% Similarity=0.250 Sum_probs=156.2
Q ss_pred ccCCCCCcEEEcCCccccccc--ccchhhcCCCCCCEEEccCCcCCcC----chh-------hcCCCCCcEEEccCCCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDNIE--WLPDSIGKLSSLVSLDLSENRIVAV----PAT-------IGGLSSLKKLDLHANRII 152 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~----~~~-------l~~l~~L~~L~L~~~~i~ 152 (421)
+..+++|++|++++|.+.... .++..+..+++|++|++++|.+..+ |.. +..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 456788999999999887632 2445678999999999999866532 333 478999999999999998
Q ss_pred C-----CchhhhCCCCCcEEECcCCCCCC-----CchhhcCC---------CCCCEEECCCCCCC--CCc---cccCCCc
Q 014624 153 E-----LPDSIGDLLSLVYLDLRGNQISA-----LPVALSRL---------VRLEELDLGSNNLS--SLP---DSIGSLI 208 (421)
Q Consensus 153 ~-----l~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~~---------~~L~~L~l~~~~l~--~~~---~~~~~l~ 208 (421)
. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|++. .++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 56788899999999999999873 22334344 78888998888776 222 2233444
Q ss_pred cccccccccccCCCC--cchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCC-----cCCcccCCCCCCcE
Q 014624 209 SLKKLIVETNDLEEL--PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK-----QLPTTMSSLSSLRE 281 (421)
Q Consensus 209 ~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~ 281 (421)
+|+.|++++|.++.. .. .++..+..+++|+.|++++|.++ .++..+..+++|++
T Consensus 188 ~L~~L~L~~n~l~~~g~~~-------------------l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEH-------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp TCCEEECCSSCCCHHHHHH-------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CcCEEECcCCCCCHhHHHH-------------------HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 455555544444310 00 11113344455555555555552 23444555555555
Q ss_pred EECcCCCCCCC-----chhhhc--cCcccEEEccCCccCC---Cccchhh-cCCCCCcEEeCccCCCCccc---hh-hcC
Q 014624 282 LDVSFNELESV-----PESLCF--ATTLVKMNIGNNFADL---RALPRSI-GNLEMLEELDISNNQIRVLP---DS-FRM 346 (421)
Q Consensus 282 L~L~~n~l~~~-----~~~~~~--~~~L~~L~l~~~~~~~---~~~~~~~-~~l~~L~~L~L~~n~l~~l~---~~-~~~ 346 (421)
|+|++|.++.. +..+.. +++|+.|++++|.... ..+|..+ .++++|++|++++|.++... .. ...
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 328 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHH
Confidence 55555555432 233322 5555555555553221 1255555 55788888888888888544 21 223
Q ss_pred CCCCCEEEccCC
Q 014624 347 LSRLRVLRVQEN 358 (421)
Q Consensus 347 l~~L~~L~l~~n 358 (421)
+++++.+.+...
T Consensus 329 l~~~~~~~l~~~ 340 (386)
T 2ca6_A 329 FSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCCEECCC
T ss_pred hhhcCcchhhhc
Confidence 344444455443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=177.49 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=174.4
Q ss_pred CCCCCcEEEcCCcccccc--cccchhhcCCCCCCEEEccCCcCCcC-chhh--cCCCCCcEEEccCCCCCCC-c----hh
Q 014624 88 SKKGTRDLNLQNKLMDNI--EWLPDSIGKLSSLVSLDLSENRIVAV-PATI--GGLSSLKKLDLHANRIIEL-P----DS 157 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l--~~l~~L~~L~L~~~~i~~l-~----~~ 157 (421)
....++.+.+.++.+... ..+.. +..+++|++|++++|.+... +..+ ..+++|++|++++|.++.. + ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 445688899988766431 21222 22456799999999998854 5555 8899999999999998842 2 23
Q ss_pred hhCCCCCcEEECcCCCCCCCc-hhhcCCCCCCEEECCCCCCCC---Cc--cccCCCccccccccccccCCCCcc----hh
Q 014624 158 IGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSS---LP--DSIGSLISLKKLIVETNDLEELPH----TI 227 (421)
Q Consensus 158 ~~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~---~~--~~~~~l~~L~~L~l~~n~~~~~~~----~~ 227 (421)
+..+++|++|++++|.++.++ ..+..+++|++|++++|++.. ++ ..+..+++|++|++++|.++.++. .+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 457899999999999998765 577889999999999998763 32 224678899999999999986654 24
Q ss_pred cCCcCccEEEcccCCCCCc-hhhhhcc---CCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCccc
Q 014624 228 GQCSSLRELRVDYNRLKAL-PEAVGKI---HTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLV 303 (421)
Q Consensus 228 ~~~~~L~~L~l~~~~l~~~-~~~l~~~---~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~ 303 (421)
..+++|++|++++|+++.. |..+..+ ++|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 6789999999999999976 6555555 699999999999999987764 899999999999998765 67789999
Q ss_pred EEEccCCcc
Q 014624 304 KMNIGNNFA 312 (421)
Q Consensus 304 ~L~l~~~~~ 312 (421)
.|++++|..
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 999999953
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=174.61 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=178.2
Q ss_pred CCCCCCEEEccCCcCCc--Cch--hhcCCCCCcEEEccCCCCC-CCchhh--hCCCCCcEEECcCCCCCCC-c----hhh
Q 014624 114 KLSSLVSLDLSENRIVA--VPA--TIGGLSSLKKLDLHANRII-ELPDSI--GDLLSLVYLDLRGNQISAL-P----VAL 181 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~--~~~--~l~~l~~L~~L~L~~~~i~-~l~~~~--~~l~~L~~L~l~~~~l~~l-~----~~~ 181 (421)
....++.+.+.++.+.. +.. .+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44568899999888763 111 2234577999999999988 445555 7899999999999998852 2 234
Q ss_pred cCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCC---Cc--chhcCCcCccEEEcccCCCCCchhh----hh
Q 014624 182 SRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEE---LP--HTIGQCSSLRELRVDYNRLKALPEA----VG 251 (421)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~---~~--~~~~~~~~L~~L~l~~~~l~~~~~~----l~ 251 (421)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|+++.++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 57899999999999998765 678899999999999998753 22 2346789999999999999877653 46
Q ss_pred ccCCCCeeecccccCCcC-CcccCCC---CCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCC
Q 014624 252 KIHTLEVLSVRYNNIKQL-PTTMSSL---SSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEML 327 (421)
Q Consensus 252 ~~~~L~~L~l~~n~l~~l-~~~l~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 327 (421)
.+++|++|++++|.++.. |..+..+ ++|++|++++|+++.+|..+. ++|+.|++++|. +..+|. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~--l~~~~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR--LNRAPQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC--CCSCCC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc--CCCCch-hhhCCCc
Confidence 789999999999999986 7666665 799999999999999888764 899999999994 455554 6788999
Q ss_pred cEEeCccCCCCc
Q 014624 328 EELDISNNQIRV 339 (421)
Q Consensus 328 ~~L~L~~n~l~~ 339 (421)
+.|++++|.++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999874
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.6e-21 Score=183.95 Aligned_cols=235 Identities=19% Similarity=0.255 Sum_probs=176.3
Q ss_pred CCCCCcEEEcCCccccccc--ccchhhcCCC-CCCEEEccCCcCCcC-chhhcCC-----CCCcEEEccCCCCCCCch--
Q 014624 88 SKKGTRDLNLQNKLMDNIE--WLPDSIGKLS-SLVSLDLSENRIVAV-PATIGGL-----SSLKKLDLHANRIIELPD-- 156 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~--~l~~~~~~~~-~L~~L~l~~~~l~~~-~~~l~~l-----~~L~~L~L~~~~i~~l~~-- 156 (421)
..++|++|++++|.+.+.. .+.+.+..++ +|++|++++|.+... +..+..+ ++|++|++++|.++..+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4456999999999887754 1226788888 899999999998865 4444443 999999999999985433
Q ss_pred ---hhhCC-CCCcEEECcCCCCCCCch-----hhcC-CCCCCEEECCCCCCCC-----CccccCCCc-cccccccccccC
Q 014624 157 ---SIGDL-LSLVYLDLRGNQISALPV-----ALSR-LVRLEELDLGSNNLSS-----LPDSIGSLI-SLKKLIVETNDL 220 (421)
Q Consensus 157 ---~~~~l-~~L~~L~l~~~~l~~l~~-----~~~~-~~~L~~L~l~~~~l~~-----~~~~~~~l~-~L~~L~l~~n~~ 220 (421)
.+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+.. ++..+...+ +|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 25555 899999999999986643 2344 3699999999998883 334445555 899999999998
Q ss_pred CCCc-----chhcCC-cCccEEEcccCCCCC-----chhhhhc-cCCCCeeecccccCCcCC-----cccCCCCCCcEEE
Q 014624 221 EELP-----HTIGQC-SSLRELRVDYNRLKA-----LPEAVGK-IHTLEVLSVRYNNIKQLP-----TTMSSLSSLRELD 283 (421)
Q Consensus 221 ~~~~-----~~~~~~-~~L~~L~l~~~~l~~-----~~~~l~~-~~~L~~L~l~~n~l~~l~-----~~l~~~~~L~~L~ 283 (421)
+... ..+..+ ++|+.|++++|+++. ++..+.. .++|++|++++|.++..+ ..+..+++|++|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 7543 244556 599999999999986 5556655 459999999999998753 4567889999999
Q ss_pred CcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCc
Q 014624 284 VSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRV 339 (421)
Q Consensus 284 L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 339 (421)
+++|.+..+... ....++..+..+++|+.|++++|.+..
T Consensus 260 L~~n~l~~i~~~-----------------~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 260 LDYDIVKNMSKE-----------------QCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEHHHHTTCCHH-----------------HHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eccCCccccCHH-----------------HHHHHHHHhccCCceEEEecCCCcCCC
Confidence 999986655432 112334455667777778888777763
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=4.5e-21 Score=179.01 Aligned_cols=245 Identities=18% Similarity=0.240 Sum_probs=177.2
Q ss_pred CCCCEEEccCCcCCcCchhhcCC--CCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCC--CchhhcCCCCCCEEE
Q 014624 116 SSLVSLDLSENRIVAVPATIGGL--SSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA--LPVALSRLVRLEELD 191 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~~l~~l--~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~ 191 (421)
..+++++++++.+. +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.++. ++..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34788888888766 3455555 78888888888887665556678888899998888773 666778888899999
Q ss_pred CCCCCCC-CCccccCCCccccccccccc-cCC--CCcchhcCCcCccEEEcccC-CCCC--chhhhhccC-CCCeeeccc
Q 014624 192 LGSNNLS-SLPDSIGSLISLKKLIVETN-DLE--ELPHTIGQCSSLRELRVDYN-RLKA--LPEAVGKIH-TLEVLSVRY 263 (421)
Q Consensus 192 l~~~~l~-~~~~~~~~l~~L~~L~l~~n-~~~--~~~~~~~~~~~L~~L~l~~~-~l~~--~~~~l~~~~-~L~~L~l~~ 263 (421)
+++|.+. ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9888877 44566777888888888888 566 25556777888889998888 7774 566677888 888999888
Q ss_pred c--cCC--cCCcccCCCCCCcEEECcCCC-CC-CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCC
Q 014624 264 N--NIK--QLPTTMSSLSSLRELDVSFNE-LE-SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQI 337 (421)
Q Consensus 264 n--~l~--~l~~~l~~~~~L~~L~L~~n~-l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 337 (421)
| .++ .++..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|..........+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 444 356667778888999998888 55 455677788888999988885222222235677888899999888 4
Q ss_pred Ccc-chhhcCCCCCCEEEccCCCCCCCcH
Q 014624 338 RVL-PDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 338 ~~l-~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
+.- -..+. .+++.|++++|.++...+
T Consensus 284 ~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 284 PDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred CHHHHHHHH--hhCcceEEecccCccccC
Confidence 421 11221 124445578888876544
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=6.5e-20 Score=181.31 Aligned_cols=176 Identities=28% Similarity=0.417 Sum_probs=124.3
Q ss_pred CCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCC
Q 014624 116 SSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSN 195 (421)
Q Consensus 116 ~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~ 195 (421)
.+|++|++++|.++.+|..+ .++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|+.|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 37888888888888877644 377888888888888877 457888888888888888776 443 7888888888
Q ss_pred CCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCC
Q 014624 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSS 275 (421)
Q Consensus 196 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~ 275 (421)
.++.+|. .+++|+.|++++|.++.++. .+++|+.|++++|+++.+|. +. ++|+.|++++|.++.+|. +..
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 8877765 56777777777777776655 45677777777777777665 43 677777777777776666 443
Q ss_pred CCCC-------cEEECcCCCCCCCchhhhccCcccEEEccCCc
Q 014624 276 LSSL-------RELDVSFNELESVPESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 276 ~~~L-------~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~ 311 (421)
+| +.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 55 67777777766666655555555555555553
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=7.9e-20 Score=180.70 Aligned_cols=185 Identities=33% Similarity=0.469 Sum_probs=150.6
Q ss_pred CCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCcccccccccccc
Q 014624 140 SLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETND 219 (421)
Q Consensus 140 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~ 219 (421)
+|++|++++|.++.+|..+ +++|++|++++|.++.+| ..+++|+.|++++|.++.+|. +.. +|+.|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 8999999999999888765 478999999999999988 457899999999999999887 554 89999999999
Q ss_pred CCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhcc
Q 014624 220 LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 299 (421)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 299 (421)
++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~- 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV- 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC--
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH-
Confidence 998876 67899999999999998876 56889999999999999887 65 899999999999998877 433
Q ss_pred Ccc-------cEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC-ccchhhcC
Q 014624 300 TTL-------VKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRM 346 (421)
Q Consensus 300 ~~L-------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 346 (421)
+| +.|++++| .+..+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 201 -~L~~~~~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCREN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --------CCEEEECCSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -hhhcccccceEEecCCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66 77777777 45567776766777778888877776 34444443
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.6e-20 Score=171.40 Aligned_cols=172 Identities=23% Similarity=0.364 Sum_probs=103.6
Q ss_pred cCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEEC
Q 014624 113 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDL 192 (421)
Q Consensus 113 ~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 192 (421)
..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 345566666666666666533 5566666666666666666544 5666666666666666666543 556666666666
Q ss_pred CCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcc
Q 014624 193 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTT 272 (421)
Q Consensus 193 ~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~ 272 (421)
++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+++.++. +..+++|+.|++++|.++.++.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 666666552 355555666666666655555 345555666666666666665544 5555666666666666655542
Q ss_pred cCCCCCCcEEECcCCCCCC
Q 014624 273 MSSLSSLRELDVSFNELES 291 (421)
Q Consensus 273 l~~~~~L~~L~L~~n~l~~ 291 (421)
+..+++|+.|++++|+++.
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 5556666666666665543
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=4.3e-22 Score=200.38 Aligned_cols=325 Identities=14% Similarity=0.073 Sum_probs=214.9
Q ss_pred hHHHhhhhHHHHHHhcccccccCccceeeecccC--CC----CCccchHHhhhhhhhccCCCCCcEEEcCCccccccc--
Q 014624 35 SSFCLLLTDFLILQLGSIIFRNKVPIMIMCMCCV--GQ----DGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIE-- 106 (421)
Q Consensus 35 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 106 (421)
......+++|+.|+++++.+.+..+..+...+.. .. ....+....+..+ ...+++|++|++++|.+.+..
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI--VTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHH--HHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHH--HhhCCCCCEEECccccccCcchh
Confidence 3345577888888888887776544433332111 00 0001111111111 125678888888887654422
Q ss_pred ccchhhcCCCCCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCC----CC
Q 014624 107 WLPDSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQIS----AL 177 (421)
Q Consensus 107 ~l~~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~----~l 177 (421)
.++.....+++|++|++++|.+.. ++..+.++++|++|++++|.+..++..+..+++|++|+++..... ..
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 144456677888888888887762 334556788888888888887777777788888888888753222 23
Q ss_pred chhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCC--CcchhcCCcCccEEEcccCCCC--Cchhhhhcc
Q 014624 178 PVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLK--ALPEAVGKI 253 (421)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~~~l~--~~~~~l~~~ 253 (421)
+..+..+++|+.++++++....++..+..+++|++|++++|.++. +...+..+++|+.|+++ +.+. .++.....+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 345667788888888887666777777788899999999888652 22346788999999998 3333 333445678
Q ss_pred CCCCeeeccc-----------ccCCc--CCcccCCCCCCcEEECcCCCCCCC-chhhhc-cCcccEEEccCC--ccCCCc
Q 014624 254 HTLEVLSVRY-----------NNIKQ--LPTTMSSLSSLRELDVSFNELESV-PESLCF-ATTLVKMNIGNN--FADLRA 316 (421)
Q Consensus 254 ~~L~~L~l~~-----------n~l~~--l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~-~~~L~~L~l~~~--~~~~~~ 316 (421)
++|++|++++ +.++. +......+++|++|+++.+.+++. ...+.. +++|+.|++.++ ...+..
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 8999999993 45543 333455689999999988888732 334444 889999999632 112222
Q ss_pred ------cchhhcCCCCCcEEeCccCC--CCc--cchhhcCCCCCCEEEccCCCCCC
Q 014624 317 ------LPRSIGNLEMLEELDISNNQ--IRV--LPDSFRMLSRLRVLRVQENPLEV 362 (421)
Q Consensus 317 ------~~~~~~~l~~L~~L~L~~n~--l~~--l~~~~~~l~~L~~L~l~~n~~~~ 362 (421)
++..+..+++|++|+++.|. ++. +......+++|+.|++++|+++.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 44456779999999998763 662 22233458999999999999764
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.9e-19 Score=162.21 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=155.6
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEE
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYL 167 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 167 (421)
.+++|++|+++++.+..+. .+..+++|++|++++|.+..++. +.++++|++|++++|.++.++. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 4568999999999887764 47789999999999999999876 8999999999999999998754 8899999999
Q ss_pred ECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch
Q 014624 168 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP 247 (421)
Q Consensus 168 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 247 (421)
++++|.++.++ .+..+++|+.|++++|++..+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh
Confidence 99999999884 678899999999999999988 568899999999999999998866 889999999999999999986
Q ss_pred hhhhccCCCCeeecccccCCcCC
Q 014624 248 EAVGKIHTLEVLSVRYNNIKQLP 270 (421)
Q Consensus 248 ~~l~~~~~L~~L~l~~n~l~~l~ 270 (421)
. +..+++|+.|++++|.++..+
T Consensus 195 ~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G-GTTCTTCSEEEEEEEEEECCC
T ss_pred h-hccCCCCCEEECcCCcccCCc
Confidence 4 888999999999999988754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=5.4e-19 Score=157.83 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=104.6
Q ss_pred CCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCcc-hhcCCcCccEEEccc
Q 014624 163 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDY 240 (421)
Q Consensus 163 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~ 240 (421)
..++++++++.++.+|..+. +.++.|++++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34566666666666655443 45666666666655443 234455555555555555554322 234444555555555
Q ss_pred CCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchh-hhccCcccEEEccCCccCCCccch
Q 014624 241 NRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPES-LCFATTLVKMNIGNNFADLRALPR 319 (421)
Q Consensus 241 ~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 319 (421)
|+++.++. ..+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++.
T Consensus 93 n~l~~~~~----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~ 148 (251)
T 3m19_A 93 NQLASLPL----------------------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPA 148 (251)
T ss_dssp SCCCCCCT----------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCT
T ss_pred CcccccCh----------------------hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC--cCCccCH
Confidence 54444432 2334444555555555544444332 234455555555554 2233333
Q ss_pred -hhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCc
Q 014624 320 -SIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPP 364 (421)
Q Consensus 320 -~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~ 364 (421)
.+..+++|+.|+|++|+++.++. .+..+++|+.|++++|++++.+
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 57788999999999999998875 7889999999999999999873
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.6e-21 Score=196.20 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCcCccEEEcccCCCCCch-hhh-hccCCCCeeecc--c----ccCCcCC------cccCCCCCCcEEECcCCCCCC-Cc
Q 014624 229 QCSSLRELRVDYNRLKALP-EAV-GKIHTLEVLSVR--Y----NNIKQLP------TTMSSLSSLRELDVSFNELES-VP 293 (421)
Q Consensus 229 ~~~~L~~L~l~~~~l~~~~-~~l-~~~~~L~~L~l~--~----n~l~~l~------~~l~~~~~L~~L~L~~n~l~~-~~ 293 (421)
.+++|+.|.+..+.++... ..+ ..+++|+.|+++ + +.++..| ..+..+++|+.|++++ .+++ ..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 3567777766666666321 222 357788888888 3 4555332 2356678888888876 5552 22
Q ss_pred hhhhc-cCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCcc--chhhcCCCCCCEEEccCCCC
Q 014624 294 ESLCF-ATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVL--PDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 294 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~l~~L~~L~l~~n~~ 360 (421)
..+.. +++|+.|++++|......+......+++|+.|+|++|.++.. ......+++|+.|++++|++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 33433 788999999888643233333336689999999999988733 23455688999999999987
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.2e-18 Score=153.91 Aligned_cols=172 Identities=30% Similarity=0.506 Sum_probs=100.4
Q ss_pred CCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCC
Q 014624 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSN 195 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~ 195 (421)
.++++++++.+..+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555554443332 345555555555554332 34455555555555555554432 3455555555555555
Q ss_pred CCCCCc-cccCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCCc-
Q 014624 196 NLSSLP-DSIGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLPT- 271 (421)
Q Consensus 196 ~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~- 271 (421)
.+..++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|+++.++. .+..+++|+.|++++|.++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 555443 2344555555555555555554433 4556677777777777776654 46677778888888887777653
Q ss_pred ccCCCCCCcEEECcCCCCCC
Q 014624 272 TMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 272 ~l~~~~~L~~L~L~~n~l~~ 291 (421)
.+..+++|++|++++|.+..
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCT
T ss_pred HHhCCCCCCEEEeeCCceeC
Confidence 67777888888888887763
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.6e-19 Score=178.88 Aligned_cols=170 Identities=24% Similarity=0.366 Sum_probs=84.5
Q ss_pred CCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECC
Q 014624 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLG 193 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 193 (421)
.+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..++. +..+++|+.|++++|.++.++ .+..+++|+.|+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 3444555555555544443 24445555555555555554433 444555555555555554443 34444555555555
Q ss_pred CCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCccc
Q 014624 194 SNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTM 273 (421)
Q Consensus 194 ~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l 273 (421)
+|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|+++.++. +..+++|+.|++++|.++.++ .+
T Consensus 118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 118 HNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp TSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH
Confidence 55554442 244445555555555555444 344455555555555555554433 445555555555555555542 34
Q ss_pred CCCCCCcEEECcCCCCC
Q 014624 274 SSLSSLRELDVSFNELE 290 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~ 290 (421)
..+++|+.|+|++|.+.
T Consensus 194 ~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCTTCSEEECCSEEEE
T ss_pred ccCCCCCEEEccCCcCc
Confidence 55555555555555544
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4.4e-18 Score=169.99 Aligned_cols=196 Identities=23% Similarity=0.338 Sum_probs=167.7
Q ss_pred hhhhHHHHHHhcccccccCccceeeecccCCCCCccchHHhhhhhhhccCCCCCcEEEcCCcccccccccchhhcCCCCC
Q 014624 39 LLLTDFLILQLGSIIFRNKVPIMIMCMCCVGQDGEKLSLIKLASLIEVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSL 118 (421)
Q Consensus 39 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 118 (421)
..+.++..+.++...+.+.++ ...+++|+.|+++++.+..+. .+..+++|
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--------------------------~~~L~~L~~L~l~~n~i~~l~----~l~~l~~L 67 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--------------------------QNELNSIDQIIANNSDIKSVQ----GIQYLPNV 67 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--------------------------HHHHTTCCCCBCTTCCCCCCT----TGGGCTTC
T ss_pred HHHHHHHHHhccCCCcccccc--------------------------hhcCCCCCEEECcCCCCCCCh----HHccCCCC
Confidence 345677777777665544322 235568999999998877654 57789999
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLS 198 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~ 198 (421)
+.|++++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus 68 ~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred CEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC
Confidence 999999999998866 889999999999999999875 6889999999999999999875 5788999999999999999
Q ss_pred CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC
Q 014624 199 SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP 270 (421)
Q Consensus 199 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~ 270 (421)
.+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|.+...|
T Consensus 145 ~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 145 DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 88 568899999999999999998866 889999999999999999885 5788999999999999887754
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=4.8e-18 Score=159.31 Aligned_cols=234 Identities=18% Similarity=0.264 Sum_probs=172.9
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhcCCCCCcEEEccCCCCC-CCch-hhhCCCCCcE-EE
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIGGLSSLKKLDLHANRII-ELPD-SIGDLLSLVY-LD 168 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~l~~L~~L~L~~~~i~-~l~~-~~~~l~~L~~-L~ 168 (421)
+.++.+++++.. +|..+ .+++++|++++|.++.++. +|.++++|++|+|++|.+. .++. .|..++++.. +.
T Consensus 12 ~~v~C~~~~Lt~---iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTE---IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCS---CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCc---cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 466666655544 45544 3679999999999998864 7899999999999999875 4543 5677888775 55
Q ss_pred CcCCCCCCCc-hhhcCCCCCCEEECCCCCCCCCcc-ccCCCcccccccccc-ccCCCCcc-hhcCC-cCccEEEcccCCC
Q 014624 169 LRGNQISALP-VALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVET-NDLEELPH-TIGQC-SSLRELRVDYNRL 243 (421)
Q Consensus 169 l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~-n~~~~~~~-~~~~~-~~L~~L~l~~~~l 243 (421)
+..|+++.++ ..+..+++|++|++++|++..++. .+.....+..+++.+ +.+..++. .+..+ ..++.|++++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 5668888774 467889999999999999987764 234455667777755 45655543 33444 3688899999999
Q ss_pred CCchhhhhccCCCCeeeccc-ccCCcCCc-ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhh
Q 014624 244 KALPEAVGKIHTLEVLSVRY-NNIKQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSI 321 (421)
Q Consensus 244 ~~~~~~l~~~~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (421)
+.++.......+++.+++.+ |.++.+|. .|.++++|++|++++|+++.+|.. .+.+|+.|.+.++. .++.+|. +
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~-~l~~lP~-l 242 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY-NLKKLPT-L 242 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT-TCCCCCC-T
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC-CcCcCCC-c
Confidence 98887766677899999875 67888874 678999999999999999988763 25566666665553 4566663 6
Q ss_pred cCCCCCcEEeCccC
Q 014624 322 GNLEMLEELDISNN 335 (421)
Q Consensus 322 ~~l~~L~~L~L~~n 335 (421)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 77888888888654
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=3.7e-21 Score=193.58 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=105.4
Q ss_pred CccccCCCccccccccccccCCC--CcchhcCCcCccEEEcccCCCC--CchhhhhccCCCCeeeccc---------ccC
Q 014624 200 LPDSIGSLISLKKLIVETNDLEE--LPHTIGQCSSLRELRVDYNRLK--ALPEAVGKIHTLEVLSVRY---------NNI 266 (421)
Q Consensus 200 ~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~~~l~--~~~~~l~~~~~L~~L~l~~---------n~l 266 (421)
++..+..+++|++|++++|.++. +...+..+++|+.|++++| ++ .++.....+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 33333456788888888887652 2333567888999998887 33 2223334678899998844 233
Q ss_pred Cc--CCcccCCCCCCcEEECcCCCCCCC-chhh-hccCcccEEEcc--C--CccCCC------ccchhhcCCCCCcEEeC
Q 014624 267 KQ--LPTTMSSLSSLRELDVSFNELESV-PESL-CFATTLVKMNIG--N--NFADLR------ALPRSIGNLEMLEELDI 332 (421)
Q Consensus 267 ~~--l~~~l~~~~~L~~L~L~~n~l~~~-~~~~-~~~~~L~~L~l~--~--~~~~~~------~~~~~~~~l~~L~~L~L 332 (421)
+. +.....++++|++|.++.+.++.. ...+ ..+++|+.|+++ + ....+. .++..+..+++|+.|+|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 33 112223578999998888888743 2333 358999999998 3 112333 23334677899999999
Q ss_pred ccCCCCcc-chhhcC-CCCCCEEEccCCCCCC
Q 014624 333 SNNQIRVL-PDSFRM-LSRLRVLRVQENPLEV 362 (421)
Q Consensus 333 ~~n~l~~l-~~~~~~-l~~L~~L~l~~n~~~~ 362 (421)
++ .++.. ...+.. +++|+.|++++|.++.
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 87 66632 234444 8999999999999754
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=156.72 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=82.0
Q ss_pred CcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcC
Q 014624 92 TRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRG 171 (421)
Q Consensus 92 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~ 171 (421)
+..++++++.+.++. .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc----chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 444444444443322 2344555555555555555544 34455555555555555555443 44555555555555
Q ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhh
Q 014624 172 NQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVG 251 (421)
Q Consensus 172 ~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~ 251 (421)
|.++.++.... ++|+.|++++|++..++ .+..+++|+.|++++|+++.++ .+.
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~------------------------~l~~l~~L~~L~Ls~N~i~~~~-~l~ 147 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTD------------------------SLIHLKNLEILSIRNNKLKSIV-MLG 147 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSG------------------------GGTTCTTCCEEECTTSCCCBCG-GGG
T ss_pred CccCCcCcccc--CcccEEEccCCccCCCh------------------------hhcCcccccEEECCCCcCCCCh-HHc
Confidence 55554432211 44555555544444432 2444455555555555555443 344
Q ss_pred ccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCC
Q 014624 252 KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 252 ~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~ 291 (421)
.+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.
T Consensus 148 ~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 455555555555555554 444555555555555555443
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=3.6e-18 Score=160.18 Aligned_cols=216 Identities=19% Similarity=0.306 Sum_probs=111.2
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCc-Cc-hhhcCCCCCcE-EEccCCCCCCCc-hhhhCCCCCc
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVA-VP-ATIGGLSSLKK-LDLHANRIIELP-DSIGDLLSLV 165 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~-~~-~~l~~l~~L~~-L~L~~~~i~~l~-~~~~~l~~L~ 165 (421)
+++++|++++|.+..+. +..|.++++|++|++++|.+.+ ++ .+|.+++++++ +.+.+|+++.++ ..+..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEEC--TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcC--HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 45666666665554443 2345566666666666665533 32 34555555544 344455555543 3455566666
Q ss_pred EEECcCCCCCCCch-hhcCCCCCCEEECCC-CCCCCCcc-ccCCC-ccccccccccccCCCCcchhcCCcCccEEEcc-c
Q 014624 166 YLDLRGNQISALPV-ALSRLVRLEELDLGS-NNLSSLPD-SIGSL-ISLKKLIVETNDLEELPHTIGQCSSLRELRVD-Y 240 (421)
Q Consensus 166 ~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~-~~l~~~~~-~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~-~ 240 (421)
+|++++|.++.++. .+....++..+++.+ +.+..++. .+..+ ..++.|++++|.++.++.......+++.+++. +
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 66666666655443 233334455555543 34444432 22222 23555666666666555544445556666654 3
Q ss_pred CCCCCchh-hhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCC-CCCCCchhhhccCcccEEEccCC
Q 014624 241 NRLKALPE-AVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN-ELESVPESLCFATTLVKMNIGNN 310 (421)
Q Consensus 241 ~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~~ 310 (421)
|.++.++. .+..+++|+.|++++|.++.+|.. .+.+|+.|.+.++ .++.+| .+..+++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 45555553 345556666666666666665532 2344445544433 244444 2445556666666543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.8e-18 Score=155.41 Aligned_cols=171 Identities=22% Similarity=0.329 Sum_probs=128.1
Q ss_pred CCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEccc
Q 014624 161 LLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDY 240 (421)
Q Consensus 161 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 240 (421)
+.++..++++++.++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 445667778888888776 5677888999999999888876 57778888888888888888766 77888888888888
Q ss_pred CCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchh
Q 014624 241 NRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRS 320 (421)
Q Consensus 241 ~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 320 (421)
|+++.++.... ++|+.|++++|.++.++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|. +..+ ..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~--i~~~-~~ 167 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE--ITNT-GG 167 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC--CCBC-TT
T ss_pred CccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc--Ccch-HH
Confidence 88887764333 78888888888888774 5778888888888888888764 56666777777777763 3333 44
Q ss_pred hcCCCCCcEEeCccCCCCccc
Q 014624 321 IGNLEMLEELDISNNQIRVLP 341 (421)
Q Consensus 321 ~~~l~~L~~L~L~~n~l~~l~ 341 (421)
+..+++|+.|++++|.++..|
T Consensus 168 l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp STTCCCCCEEEEEEEEEECCC
T ss_pred hccCCCCCEEeCCCCcccCCc
Confidence 566667777777777666544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=5.2e-17 Score=142.77 Aligned_cols=135 Identities=28% Similarity=0.428 Sum_probs=90.6
Q ss_pred cCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCCCCchh-hhccCcccEEEc
Q 014624 231 SSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELESVPES-LCFATTLVKMNI 307 (421)
Q Consensus 231 ~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l 307 (421)
++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|+|++|+++.++.. +..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4455555555555544 234455555556666665555554 2345556666666666666555433 345566666666
Q ss_pred cCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHH
Q 014624 308 GNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNI 367 (421)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~ 367 (421)
++| .+..+|..+..+++|+.|+|++|+|+.++. .+..+++|+.|++++|++.|.|..+
T Consensus 120 s~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 120 CCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred cCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 666 334566677888999999999999998885 6889999999999999999998643
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.2e-17 Score=141.68 Aligned_cols=153 Identities=14% Similarity=0.231 Sum_probs=112.4
Q ss_pred CCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCc-CCcccCCCCCCcEEE
Q 014624 205 GSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQ-LPTTMSSLSSLRELD 283 (421)
Q Consensus 205 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~ 283 (421)
..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34556666666666666655 5666677777777777666554 56667788888888887776 456777788888888
Q ss_pred CcCCCCCC-CchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCC
Q 014624 284 VSFNELES-VPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEV 362 (421)
Q Consensus 284 L~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~ 362 (421)
+++|.+++ .+..+..+++|+.|++++|. .+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 88888874 45667778888888888874 144555 5788899999999999999887 68889999999999998753
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.8e-20 Score=186.17 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=86.8
Q ss_pred CccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCc
Q 014624 232 SLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 232 ~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~ 311 (421)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++.+| .+..+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 47778888887777765 77777788888888877777777777888888888888777776 67777777777777773
Q ss_pred cCCCcc--chhhcCCCCCcEEeCccCCCCccchh----hcCCCCCCEEEc
Q 014624 312 ADLRAL--PRSIGNLEMLEELDISNNQIRVLPDS----FRMLSRLRVLRV 355 (421)
Q Consensus 312 ~~~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~l~~L~~L~l 355 (421)
+..+ |..+..+++|+.|+|++|.++.+|.. +..+|+|+.|++
T Consensus 520 --l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 --LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp --CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred --CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3444 66777777777777777777765542 334677777653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=142.29 Aligned_cols=151 Identities=16% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCC-CchhhcCCCCCCEEEC
Q 014624 114 KLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISA-LPVALSRLVRLEELDL 192 (421)
Q Consensus 114 ~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l 192 (421)
.+++|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4455566666666555554 3555555666666555544432 44455555555555555543 2333444444444444
Q ss_pred CCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCC-CCCchhhhhccCCCCeeecccccCCcCCc
Q 014624 193 GSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNR-LKALPEAVGKIHTLEVLSVRYNNIKQLPT 271 (421)
Q Consensus 193 ~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~l~~~~~L~~L~l~~n~l~~l~~ 271 (421)
++|.+.. ..+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++.++
T Consensus 120 s~n~i~~----------------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 120 SHSAHDD----------------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp CSSBCBG----------------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred cCCccCc----------------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 4444432 122334444555555555554 44443 3445555555555555555544
Q ss_pred ccCCCCCCcEEECcCCCCC
Q 014624 272 TMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 272 ~l~~~~~L~~L~L~~n~l~ 290 (421)
.+..+++|++|++++|++.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 4455555555555555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.8e-17 Score=142.69 Aligned_cols=151 Identities=21% Similarity=0.405 Sum_probs=91.0
Q ss_pred EEECCCCCCCCCccccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccC
Q 014624 189 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNI 266 (421)
Q Consensus 189 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l 266 (421)
.+++++++++.+|..+. ++++.|++++|.++.++. .+..+++|+.|++++|+++.+ +..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444444444443222 334444444444443322 344444555555555555443 33445555555555555555
Q ss_pred CcCCc-ccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hh
Q 014624 267 KQLPT-TMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SF 344 (421)
Q Consensus 267 ~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~ 344 (421)
+.++. .+.++++|++|+|++|.++.++ +..+..+++|+.|+|++|.|+.++. .+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLR------------------------VDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeC------------------------HHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 55443 2445555555555555554432 3457788999999999999998875 58
Q ss_pred cCCCCCCEEEccCCCCCCCcH
Q 014624 345 RMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 345 ~~l~~L~~L~l~~n~~~~~~~ 365 (421)
..+++|+.|++++|++.|.|.
T Consensus 149 ~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTCTTCCEEECCSSCEECSGG
T ss_pred hCCCCCCEEEeCCCCcCCCCc
Confidence 889999999999999999885
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.9e-17 Score=155.86 Aligned_cols=179 Identities=28% Similarity=0.378 Sum_probs=115.0
Q ss_pred cEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccc-cC-CCccccccccccccCCCCc-chhcCCcCccEEEcccC
Q 014624 165 VYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDS-IG-SLISLKKLIVETNDLEELP-HTIGQCSSLRELRVDYN 241 (421)
Q Consensus 165 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~~-~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~~ 241 (421)
+.++++++.++.+|..+. +.++.|++++|.+..++.. +. .+++|+.|++++|.++.++ ..+..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777765443 4567777777777655433 33 5666666666666666543 24556666666666666
Q ss_pred CCCCchh-hhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCccCCCccch
Q 014624 242 RLKALPE-AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFADLRALPR 319 (421)
Q Consensus 242 ~l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (421)
+++.++. .+..+++|+.|++++|.++.+ +..+.++++|++|+|++|.++.++.... .
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------------------~ 157 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI---------------------K 157 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT---------------------C
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh---------------------c
Confidence 6665543 345556666666666666654 3455666666666666666655543210 0
Q ss_pred hhcCCCCCcEEeCccCCCCccch-hhcCCCC--CCEEEccCCCCCCCcHH
Q 014624 320 SIGNLEMLEELDISNNQIRVLPD-SFRMLSR--LRVLRVQENPLEVPPRN 366 (421)
Q Consensus 320 ~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~--L~~L~l~~n~~~~~~~~ 366 (421)
.+..+++|+.|+|++|.|+.+|. .+..++. ++.|++.+|++.|.|..
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 01568899999999999998884 6777877 48899999999999863
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=141.71 Aligned_cols=132 Identities=23% Similarity=0.313 Sum_probs=86.6
Q ss_pred ccEEEcccCCCCCch--hhhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEcc
Q 014624 233 LRELRVDYNRLKALP--EAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIG 308 (421)
Q Consensus 233 L~~L~l~~~~l~~~~--~~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~ 308 (421)
++.|++++|+++.++ ..+..+++|+.|++++|.++.++. .+.++++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 345555555555442 224455555555555555555432 45555556666666665554443 34555566666666
Q ss_pred CCccCCCcc-chhhcCCCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCCCcHH
Q 014624 309 NNFADLRAL-PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 309 ~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+|. +..+ |..+..+++|+.|+|++|+|+.+ |..+..+++|+.|++++|++.|.|..
T Consensus 114 ~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 114 SNR--ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSC--CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCc--CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 553 2222 45678899999999999999988 67899999999999999999998863
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=6.3e-17 Score=140.08 Aligned_cols=176 Identities=28% Similarity=0.390 Sum_probs=93.2
Q ss_pred cEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCccc-cCCCcccccccccccc
Q 014624 142 KKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLPDS-IGSLISLKKLIVETND 219 (421)
Q Consensus 142 ~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~ 219 (421)
+.++.+++.++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|++..++.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666666655433 3466666666666665544 345566666666666666555432 3444555555555554
Q ss_pred CCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCCchh-hh
Q 014624 220 LEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPES-LC 297 (421)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~-~~ 297 (421)
++.++.. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +.
T Consensus 88 l~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 88 LQSLPNG----------------------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHh----------------------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 4443322 23444555555555555554432 244555555555555555544432 34
Q ss_pred ccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCC-ccchhhcCCCC
Q 014624 298 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIR-VLPDSFRMLSR 349 (421)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~ 349 (421)
.+++|+.|++++|. ....+++|+.|+++.|+++ .+|..++.++.
T Consensus 146 ~l~~L~~L~l~~N~--------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSCC--------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCCC--------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45555555555552 1234556777777777666 56665555543
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.3e-19 Score=180.01 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=86.8
Q ss_pred cCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCC-------------CC-CCchhhhCCCCCcEEE-CcCCCCCCC
Q 014624 113 GKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANR-------------II-ELPDSIGDLLSLVYLD-LRGNQISAL 177 (421)
Q Consensus 113 ~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~-------------i~-~l~~~~~~l~~L~~L~-l~~~~l~~l 177 (421)
..+++|+.|++++|.+..+|..+.++++|+.|++++|. .. ..|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34566666666666666666666666666666665442 11 2233445555555555 333322221
Q ss_pred ch------hhcC--CCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhh
Q 014624 178 PV------ALSR--LVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEA 249 (421)
Q Consensus 178 ~~------~~~~--~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 249 (421)
+. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|+++.+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 11 0000 1134555555555555443 44445555555555555444444444555555555555554444 4
Q ss_pred hhccCCCCeeecccccCCcC--CcccCCCCCCcEEECcCCCCCC
Q 014624 250 VGKIHTLEVLSVRYNNIKQL--PTTMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 250 l~~~~~L~~L~l~~n~l~~l--~~~l~~~~~L~~L~L~~n~l~~ 291 (421)
+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 44444555555555544444 4444445555555555554443
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.5e-16 Score=135.35 Aligned_cols=164 Identities=29% Similarity=0.488 Sum_probs=123.3
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN 196 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~ 196 (421)
+.++++++.+..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 67888889888887644 4689999999999998765 46889999999999999998876 46889999999999999
Q ss_pred CCCCccc-cCCCccccccccccccCCCCcch-hcCCcCccEEEcccCCCCCchhh-hhccCCCCeeecccccCCcCCccc
Q 014624 197 LSSLPDS-IGSLISLKKLIVETNDLEELPHT-IGQCSSLRELRVDYNRLKALPEA-VGKIHTLEVLSVRYNNIKQLPTTM 273 (421)
Q Consensus 197 l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~-l~~~~~L~~L~l~~n~l~~l~~~l 273 (421)
+..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 9987644 57788888888888888766543 56667777777777776665532 455666666666666433
Q ss_pred CCCCCCcEEECcCCCCC
Q 014624 274 SSLSSLRELDVSFNELE 290 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~ 290 (421)
..+++|+.|+++.|.++
T Consensus 162 ~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCTTTTHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhCC
Confidence 23455566666555554
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=9e-16 Score=134.82 Aligned_cols=150 Identities=33% Similarity=0.493 Sum_probs=91.7
Q ss_pred CCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCC
Q 014624 118 LVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIEL-PDSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSN 195 (421)
Q Consensus 118 L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~ 195 (421)
-+.++++++.+..+|..+. ++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456666666665554332 5566666666655544 3345555555555555555555443 2344455555555555
Q ss_pred CCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC-cccC
Q 014624 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMS 274 (421)
Q Consensus 196 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~ 274 (421)
+++.++. ..+..+++|+.|++++|+++.+|..+..+++|+.|++++|.++.++ ..+.
T Consensus 99 ~l~~l~~----------------------~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 99 QLTVLPS----------------------AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCCCCCT----------------------TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCCccCh----------------------hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 4443321 2245566777777777777777766777778888888888877765 4577
Q ss_pred CCCCCcEEECcCCCCCC
Q 014624 275 SLSSLRELDVSFNELES 291 (421)
Q Consensus 275 ~~~~L~~L~L~~n~l~~ 291 (421)
.+++|+.|++++|.+..
T Consensus 157 ~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECTTSCBCT
T ss_pred CCCCCCEEEeeCCCccC
Confidence 78888888888887763
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=133.55 Aligned_cols=148 Identities=22% Similarity=0.339 Sum_probs=84.2
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELP--DSIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSN 195 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~ 195 (421)
++++++++.++.+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35566666555555433 123455555555555442 124455555555555555554432 3444444444444444
Q ss_pred CCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCc-hhhhhccCCCCeeecccccCCcC-Cccc
Q 014624 196 NLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIHTLEVLSVRYNNIKQL-PTTM 273 (421)
Q Consensus 196 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~~L~~L~l~~n~l~~l-~~~l 273 (421)
.+..++. ..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.++.+ |..+
T Consensus 92 ~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 92 RLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CCCCCCG----------------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ccCccCH----------------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 4443321 2345566666666666666655 34566677777777777777775 5677
Q ss_pred CCCCCCcEEECcCCCCC
Q 014624 274 SSLSSLRELDVSFNELE 290 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~ 290 (421)
..+++|++|++++|.+.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 77788888888888765
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.3e-15 Score=132.87 Aligned_cols=148 Identities=26% Similarity=0.415 Sum_probs=87.2
Q ss_pred CEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCC-chhhcCCCCCCEEECCCCC
Q 014624 119 VSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISAL-PVALSRLVRLEELDLGSNN 196 (421)
Q Consensus 119 ~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~ 196 (421)
+.++++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666654332 456666666666665543 455566666666666665544 3445555555555555555
Q ss_pred CCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCch-hhhhccCCCCeeecccccCCcCCc-ccC
Q 014624 197 LSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLPT-TMS 274 (421)
Q Consensus 197 l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~-~l~ 274 (421)
++.++.. .+..+++|+.|++++|+++.++ ..+..+++|+.|++++|.++.++. .+.
T Consensus 92 l~~l~~~----------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 92 ITELPKS----------------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp CCCCCTT----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHh----------------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 5544322 1344555566666666655443 345566677777777777776543 466
Q ss_pred CCCCCcEEECcCCCCC
Q 014624 275 SLSSLRELDVSFNELE 290 (421)
Q Consensus 275 ~~~~L~~L~L~~n~l~ 290 (421)
.+++|++|++++|.+.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 7777777777777765
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=3.5e-16 Score=147.20 Aligned_cols=149 Identities=28% Similarity=0.371 Sum_probs=76.7
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCch-hhc-CCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEEC
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPA-TIG-GLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDL 169 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~l~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l 169 (421)
+.++++++.+..+ |..+. +.++.|++++|.++.++. .+. ++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 21 ~~l~c~~~~l~~i---P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNV---PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSC---CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcc---CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3555655544432 33221 345666666666665532 343 5666666666666666554 24556666666666
Q ss_pred cCCCCCCCch-hhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCCCCcchh----cCCcCccEEEcccCCC
Q 014624 170 RGNQISALPV-ALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEELPHTI----GQCSSLRELRVDYNRL 243 (421)
Q Consensus 170 ~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~L~~L~l~~~~l 243 (421)
++|.++.++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++..+ ..+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666665543 355556666666666655543 233444555555555555554443322 2344444444444444
Q ss_pred CCc
Q 014624 244 KAL 246 (421)
Q Consensus 244 ~~~ 246 (421)
+.+
T Consensus 176 ~~l 178 (361)
T 2xot_A 176 KKL 178 (361)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=8.9e-16 Score=128.03 Aligned_cols=133 Identities=23% Similarity=0.343 Sum_probs=109.0
Q ss_pred CcCccEEEcccCCCC--CchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCC-CchhhhccCcccEEE
Q 014624 230 CSSLRELRVDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELES-VPESLCFATTLVKMN 306 (421)
Q Consensus 230 ~~~L~~L~l~~~~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~ 306 (421)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 467888888888887 7777777888888888888888877 777888888888888888887 666667788888888
Q ss_pred ccCCccCCCccc--hhhcCCCCCcEEeCccCCCCccch----hhcCCCCCCEEEccCCCCCCCcH
Q 014624 307 IGNNFADLRALP--RSIGNLEMLEELDISNNQIRVLPD----SFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 307 l~~~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
+++| .+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++...+.
T Consensus 102 Ls~N--~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGN--KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSS--SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCC--ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8888 445544 678889999999999999998876 78889999999999998876653
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=127.49 Aligned_cols=135 Identities=27% Similarity=0.333 Sum_probs=93.2
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCC-CchhhhCCCCCcE
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIE-LPDSIGDLLSLVY 166 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~-l~~~~~~l~~L~~ 166 (421)
..++|++|++++|.+.. ..+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44678888888876651 13455566777788888888877766 666777778888888777776 5666666777777
Q ss_pred EECcCCCCCCCc--hhhcCCCCCCEEECCCCCCCCCcc----ccCCCccccccccccccCCCCc
Q 014624 167 LDLRGNQISALP--VALSRLVRLEELDLGSNNLSSLPD----SIGSLISLKKLIVETNDLEELP 224 (421)
Q Consensus 167 L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~----~~~~l~~L~~L~l~~n~~~~~~ 224 (421)
|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 777777777765 466677777777777777666654 4566666666666666655544
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=5.2e-16 Score=158.77 Aligned_cols=183 Identities=23% Similarity=0.241 Sum_probs=107.5
Q ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhh
Q 014624 172 NQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVG 251 (421)
Q Consensus 172 ~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~ 251 (421)
+.+...+..+..++.|+.|++++|.+..++..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|.++.+|..+.
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 33443455677778888888888888888777778888888888888888888888888889999999999888888888
Q ss_pred ccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCC-chhhhccC-cccEEEccCCccCCCccchhhcCCCCCcE
Q 014624 252 KIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESV-PESLCFAT-TLVKMNIGNNFADLRALPRSIGNLEMLEE 329 (421)
Q Consensus 252 ~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 329 (421)
.+++|++|+|++|.++.+|..+..+++|++|+|++|.++.. |..+.... .+..+++.+|... ..+| ..|+.
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-~~~p------~~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE-IPLP------HERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-CCCC------CC---
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc-CcCc------cccce
Confidence 88999999999999988888899999999999999998854 33443322 2233566666432 2233 35666
Q ss_pred EeCccC--------CCCcc-chhhcCCCCCCEEEccCCCCC
Q 014624 330 LDISNN--------QIRVL-PDSFRMLSRLRVLRVQENPLE 361 (421)
Q Consensus 330 L~L~~n--------~l~~l-~~~~~~l~~L~~L~l~~n~~~ 361 (421)
|+++.| .++.. +..+..+..+....+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 777766 12211 123344555556666666553
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=4e-15 Score=121.41 Aligned_cols=125 Identities=25% Similarity=0.373 Sum_probs=99.7
Q ss_pred CcCccEEEcccCCCC--CchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCC-CchhhhccCcccEEE
Q 014624 230 CSSLRELRVDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELES-VPESLCFATTLVKMN 306 (421)
Q Consensus 230 ~~~L~~L~l~~~~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~ 306 (421)
.++++.|++++|.++ .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|+.|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356788888888877 6776667778888888888888877 677788888888888888886 666667788888888
Q ss_pred ccCCccCCCccc--hhhcCCCCCcEEeCccCCCCccch----hhcCCCCCCEEEccC
Q 014624 307 IGNNFADLRALP--RSIGNLEMLEELDISNNQIRVLPD----SFRMLSRLRVLRVQE 357 (421)
Q Consensus 307 l~~~~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l~~ 357 (421)
+++|. +..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 95 ls~N~--i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNK--IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSC--CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCc--CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88884 44443 678889999999999999998775 688899999998864
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=7.5e-16 Score=157.58 Aligned_cols=138 Identities=28% Similarity=0.308 Sum_probs=89.5
Q ss_pred CchhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCccc
Q 014624 131 VPATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISL 210 (421)
Q Consensus 131 ~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L 210 (421)
.+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 34566677777777777777777766666777777777777777777777777777777777777777777777777777
Q ss_pred cccccccccCCCCcchhcCCcCccEEEcccCCCCCc-hhhhhccC-CCCeeecccccCCc
Q 014624 211 KKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKAL-PEAVGKIH-TLEVLSVRYNNIKQ 268 (421)
Q Consensus 211 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~~~-~L~~L~l~~n~l~~ 268 (421)
+.|++++|.++.+|..+..+++|+.|++++|.++.. |..+.... ....+++++|.++.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 777777777777776677777777777777777643 33332221 11234566665543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=8.2e-15 Score=124.97 Aligned_cols=128 Identities=29% Similarity=0.491 Sum_probs=85.0
Q ss_pred ccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCC
Q 014624 212 KLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 212 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~ 290 (421)
.++++++.++.+|..+. ++++.|++++|+++.+|..+..+++|+.|++++|.++.++ ..|.++++|++|+|++|.++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 44555555555544322 3555555555555555555555555555555555555543 34555555555555555554
Q ss_pred CCchhhhccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcH
Q 014624 291 SVPESLCFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
.++ +..+..+++|+.|+|++|.|+.++. .+..+++|+.|++++|++.|.|.
T Consensus 92 ~i~------------------------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 92 CIP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp BCC------------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeC------------------------HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 432 2357888999999999999999886 58899999999999999999886
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.7e-15 Score=124.60 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=108.5
Q ss_pred hhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhh-hccCcccE
Q 014624 226 TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESL-CFATTLVK 304 (421)
Q Consensus 226 ~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~L~~ 304 (421)
.+..+++|+.|++++|+++.++......++|+.|++++|.++.+ ..+..+++|++|++++|.++.++..+ ..+++|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34567788888888888887754333334889999999988887 67888889999999999988877544 78889999
Q ss_pred EEccCCccCCCccch--hhcCCCCCcEEeCccCCCCccchh----hcCCCCCCEEEccCCCCC
Q 014624 305 MNIGNNFADLRALPR--SIGNLEMLEELDISNNQIRVLPDS----FRMLSRLRVLRVQENPLE 361 (421)
Q Consensus 305 L~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~----~~~l~~L~~L~l~~n~~~ 361 (421)
|++++| .+..+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+..
T Consensus 93 L~L~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNN--SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSC--CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCC--cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999998 4466666 788899999999999999988874 889999999999999754
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=9.9e-15 Score=124.45 Aligned_cols=127 Identities=22% Similarity=0.396 Sum_probs=76.2
Q ss_pred EEEcccCCCCCchhhhhccCCCCeeecccccCCcCCc--ccCCCCCCcEEECcCCCCCCC-chhhhccCcccEEEccCCc
Q 014624 235 ELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT--TMSSLSSLRELDVSFNELESV-PESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 235 ~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~L~~L~l~~~~ 311 (421)
.+++++++++.+|..+. .+++.|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 44444444444443222 144444444444444432 244444444444444444433 3344444445555554442
Q ss_pred cCCCcc-chhhcCCCCCcEEeCccCCCCcc-chhhcCCCCCCEEEccCCCCCCCcH
Q 014624 312 ADLRAL-PRSIGNLEMLEELDISNNQIRVL-PDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 312 ~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
+..+ +..+..+++|++|+|++|+|+.+ |..+..+++|+.|++++|++.+.+.
T Consensus 90 --l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 --IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp --CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred --CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 2222 23477889999999999999966 6688999999999999999999876
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=5.2e-15 Score=137.43 Aligned_cols=256 Identities=14% Similarity=0.144 Sum_probs=146.3
Q ss_pred CCCcEEEcCCcccccccccchhhcC-CCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchhhhC--------
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGK-LSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDSIGD-------- 160 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~~~~-------- 160 (421)
.++++|.++++-... .+ ..+.. +++|++|++++|.+......-..++.++.+.+..+.+.. ..|..
T Consensus 25 ~~l~~L~l~g~i~~~--~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~~~g 99 (329)
T 3sb4_A 25 NSITHLTLTGKLNAE--DF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGVTKG 99 (329)
T ss_dssp HHCSEEEEEEEECHH--HH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTEEEE
T ss_pred CceeEEEEeccccHH--HH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH--HHhcccccccccc
Confidence 367777777631111 11 12223 677777887777766211111111223333333332221 13444
Q ss_pred CCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCCc-cccCCCcccccccccccc----CCCC-cchhcC----
Q 014624 161 LLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETND----LEEL-PHTIGQ---- 229 (421)
Q Consensus 161 l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~----~~~~-~~~~~~---- 229 (421)
+++|+.|++.+ .++.++. .|..+++|+.++++.|.+..++ ..+..+.++..+....+. ...+ ...+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55566666555 5555443 3555556666666555554432 233334334433332210 0000 011222
Q ss_pred ----------------------CcCccEEEcccCCCC-CchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECc
Q 014624 230 ----------------------CSSLRELRVDYNRLK-ALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVS 285 (421)
Q Consensus 230 ----------------------~~~L~~L~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~ 285 (421)
..++..+.+.++-.. .+......+++|+.+++++|.++.++ ..|.++++|++|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 233444444432111 11111124789999999999999986 478999999999999
Q ss_pred CCCCCCCch-hhhccCccc-EEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEc
Q 014624 286 FNELESVPE-SLCFATTLV-KMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRV 355 (421)
Q Consensus 286 ~n~l~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l 355 (421)
+| ++.++. .+..+.+|+ .+++.++ +..+ +.+|.+|++|+.+++++|+++.++. .|..+++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 87 777764 577888999 9999884 2333 3678999999999999999998876 7899999998864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=9.8e-15 Score=119.06 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCCEEECCCCCCC--CCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCC-chhhhhccCCCCeeec
Q 014624 185 VRLEELDLGSNNLS--SLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKA-LPEAVGKIHTLEVLSV 261 (421)
Q Consensus 185 ~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~l~~~~~L~~L~l 261 (421)
++++.|++++|.+. .+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555554 4444444555555555555555544 445556666666666666665 5555555666666666
Q ss_pred ccccCCcCC--cccCCCCCCcEEECcCCCCCCCc
Q 014624 262 RYNNIKQLP--TTMSSLSSLRELDVSFNELESVP 293 (421)
Q Consensus 262 ~~n~l~~l~--~~l~~~~~L~~L~L~~n~l~~~~ 293 (421)
++|.++.++ ..+..+++|++|++++|.++.++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 666666643 55666667777777777666554
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.6e-14 Score=120.00 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=84.4
Q ss_pred hccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCchh-hhCCCC
Q 014624 85 EVSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPDS-IGDLLS 163 (421)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~~-~~~l~~ 163 (421)
.....++|++|++++|.+..+. ......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~---~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC---CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhH---HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4445667777777777666542 2222233777777777777766 4566777777777777777766543 366777
Q ss_pred CcEEECcCCCCCCCch--hhcCCCCCCEEECCCCCCCCCccc----cCCCccccccccccccCC
Q 014624 164 LVYLDLRGNQISALPV--ALSRLVRLEELDLGSNNLSSLPDS----IGSLISLKKLIVETNDLE 221 (421)
Q Consensus 164 L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~----~~~l~~L~~L~l~~n~~~ 221 (421)
|++|++++|.++.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777776665 566667777777777766655542 455555666655555443
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=3.7e-13 Score=113.05 Aligned_cols=129 Identities=26% Similarity=0.484 Sum_probs=85.2
Q ss_pred cEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCCchh-hhccCcccEEEccCCc
Q 014624 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESVPES-LCFATTLVKMNIGNNF 311 (421)
Q Consensus 234 ~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~~~ 311 (421)
+.+++++++++.+|..+ .++++.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44555555555554322 2455666666666555443 345556666666666666555432 3556666666666662
Q ss_pred cCCCccc-hhhcCCCCCcEEeCccCCCCccchh-hcCCCCCCEEEccCCCCCCCcHH
Q 014624 312 ADLRALP-RSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 312 ~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
+..++ ..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++.+.++.
T Consensus 88 --l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 88 --LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred --ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 23333 3467889999999999999988874 57899999999999999998764
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=2e-12 Score=122.85 Aligned_cols=254 Identities=15% Similarity=0.229 Sum_probs=173.3
Q ss_pred CCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEE
Q 014624 90 KGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYL 167 (421)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L 167 (421)
..++.+.+.+. +..+. ...|.++ +|+.+.+..+ +..+. .+|.++ +|+.+.+.. .+..++ ..|..|.+|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I~--~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIP--KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEEC--TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cCEeh--HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 56677777652 33333 2456554 6888888766 66663 466664 688888876 566554 467788889999
Q ss_pred ECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCCCC
Q 014624 168 DLRGNQISALPVALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRLKA 245 (421)
Q Consensus 168 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l~~ 245 (421)
++.++.++.++...-.+..|+.+.+..+ +..++ ..+..+++|+.+.+..+ ++.+.. .+.. .+|+.+.+. +.++.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 9888888887764444688888888754 66553 45777888888888764 444433 3344 678888883 45665
Q ss_pred ch-hhhhccCCCCeeecccccCC-----cC-CcccCCCCCCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCcc
Q 014624 246 LP-EAVGKIHTLEVLSVRYNNIK-----QL-PTTMSSLSSLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRAL 317 (421)
Q Consensus 246 ~~-~~l~~~~~L~~L~l~~n~l~-----~l-~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 317 (421)
++ ..+..|++|+.+++.++.+. .+ +..|.+|++|+.+++. +.++.++. .+..+.+|+.+.+.++- ..+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l---~~I 337 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANV---TQI 337 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTTC---CEE
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECccc---cEE
Confidence 54 46778888888888887665 33 3578888889998888 45776654 55667888888887662 222
Q ss_pred -chhhcCCCCCcEEeCccCCCCccch-hhcCCC-CCCEEEccCCC
Q 014624 318 -PRSIGNLEMLEELDISNNQIRVLPD-SFRMLS-RLRVLRVQENP 359 (421)
Q Consensus 318 -~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~-~L~~L~l~~n~ 359 (421)
..+|.++ +|+.+++.+|.+..++. .+..++ +++.|.+-.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 2467777 88888888887776654 556664 56777666543
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=9.9e-14 Score=128.73 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=141.4
Q ss_pred CCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCchhhcC--------CCCCcEEEccCCCCCCCch-hhh
Q 014624 89 KKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVPATIGG--------LSSLKKLDLHANRIIELPD-SIG 159 (421)
Q Consensus 89 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~l~~--------l~~L~~L~L~~~~i~~l~~-~~~ 159 (421)
+++|+.|++++|.+.........+ +.+..+.+..+.+. ..+|.+ +++|+.+++.. .++.+++ .|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 779999999998877221111111 11233333333221 124455 66666666666 5555543 455
Q ss_pred CCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCCCC----CCCCc-cccCCC--------------------------
Q 014624 160 DLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGSNN----LSSLP-DSIGSL-------------------------- 207 (421)
Q Consensus 160 ~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~----l~~~~-~~~~~l-------------------------- 207 (421)
.+++|+.+++.++.+..++. .|..+.++..+...... ...+. ..+..+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 66666666666666555433 34444445444444311 01110 111122
Q ss_pred ccccccccccccCC-CCcchhcCCcCccEEEcccCCCCCchh-hhhccCCCCeeecccccCCcCC-cccCCCCCCc-EEE
Q 014624 208 ISLKKLIVETNDLE-ELPHTIGQCSSLRELRVDYNRLKALPE-AVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLR-ELD 283 (421)
Q Consensus 208 ~~L~~L~l~~n~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~-~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~-~L~ 283 (421)
.++..+.+.++-.. ........+++|+.+++++|+++.++. .+..+.+|+.+++.+| ++.++ .+|.++++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 22233333322111 001111237899999999999998874 5788999999999987 77765 5799999999 999
Q ss_pred CcCCCCCCCc-hhhhccCcccEEEccCCccCCCccch-hhcCCCCCcEEeC
Q 014624 284 VSFNELESVP-ESLCFATTLVKMNIGNNFADLRALPR-SIGNLEMLEELDI 332 (421)
Q Consensus 284 L~~n~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L 332 (421)
+.+ .++.++ ..+..+++|+.+++.++ .+..++. +|.++++|+.++.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGD--KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSS--CCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCC--ccCccchhhhcCCcchhhhcc
Confidence 988 777775 57788999999999777 4455544 7889999998864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.3e-15 Score=130.69 Aligned_cols=136 Identities=21% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCcchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhccCc
Q 014624 222 ELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFATT 301 (421)
Q Consensus 222 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 301 (421)
.++..+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|+++.++ .+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34446666777777777777777766 667777777888877777777766666677788888888777765 5667777
Q ss_pred ccEEEccCCccCCCccch--hhcCCCCCcEEeCccCCCCccch-----------hhcCCCCCCEEEccCCCCCCC
Q 014624 302 LVKMNIGNNFADLRALPR--SIGNLEMLEELDISNNQIRVLPD-----------SFRMLSRLRVLRVQENPLEVP 363 (421)
Q Consensus 302 L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-----------~~~~l~~L~~L~l~~n~~~~~ 363 (421)
|+.|++++|. +..++. .+..+++|++|++++|.++..+. .+..+++|+.|+ +++++..
T Consensus 117 L~~L~l~~N~--i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 117 LRVLYMSNNK--ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp SSEEEESEEE--CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCEEECCCCc--CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 8888887773 444433 67788888888888888875422 367788888886 6776654
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.7e-13 Score=115.45 Aligned_cols=123 Identities=26% Similarity=0.444 Sum_probs=68.8
Q ss_pred EEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCcc--ccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCC
Q 014624 166 YLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD--SIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNR 242 (421)
Q Consensus 166 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~ 242 (421)
+++++++.++.+|..+. .+++.|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|+
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 44444444444443222 144444444444444332 134444444455544444433 3345555666666666666
Q ss_pred CCCchh-hhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCC
Q 014624 243 LKALPE-AVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 243 l~~~~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~ 290 (421)
++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 665443 355667777777777777764 566777778888888888776
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=7.2e-13 Score=112.87 Aligned_cols=102 Identities=28% Similarity=0.463 Sum_probs=47.0
Q ss_pred CCCEEEccCCcCCcCchhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCch-hhcCCCCCCEEECCC
Q 014624 117 SLVSLDLSENRIVAVPATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALPV-ALSRLVRLEELDLGS 194 (421)
Q Consensus 117 ~L~~L~l~~~~l~~~~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~ 194 (421)
+|++|++++|.+..+|..|.++++|++|++++|.++.++. .|..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4555555555555444445555555555555555544432 34444555555555555444432 344444444444444
Q ss_pred CCCCCCcc-ccCCCccccccccccc
Q 014624 195 NNLSSLPD-SIGSLISLKKLIVETN 218 (421)
Q Consensus 195 ~~l~~~~~-~~~~l~~L~~L~l~~n 218 (421)
|.+..++. .+..+++|+.|++++|
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCeeChhhhhcCccccEEEeCCC
Confidence 44444332 2333334444444333
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=1.1e-12 Score=109.73 Aligned_cols=109 Identities=25% Similarity=0.449 Sum_probs=80.8
Q ss_pred cEEEcccCCCCCchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCcc
Q 014624 234 RELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNFA 312 (421)
Q Consensus 234 ~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 312 (421)
+.+++++++++.+|..+. ++|+.|++++|.++.+ +..+.++++|++|+|++|+++.++.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------------------ 74 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh------------------
Confidence 456666666666665443 5666777777766665 3456666777777777776665532
Q ss_pred CCCccchhhcCCCCCcEEeCccCCCCccchh-hcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 313 DLRALPRSIGNLEMLEELDISNNQIRVLPDS-FRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 313 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
..+..+++|+.|+|++|+|+.+|.. +..+++|+.|++++|++.+.|..+.
T Consensus 75 ------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 75 ------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 2357889999999999999998874 8999999999999999999987543
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.4e-12 Score=108.67 Aligned_cols=110 Identities=25% Similarity=0.441 Sum_probs=80.7
Q ss_pred ccEEEcccCCCCCchhhhhccCCCCeeecccccCCcC-CcccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCc
Q 014624 233 LRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 233 L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~ 311 (421)
.+.+++++++++.+|..+. ++++.|++++|.++.+ +..+.++++|++|+|++|+++.++.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------------- 71 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------- 71 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-----------------
Confidence 3566666666666664432 5666677777766665 3456666677777777766665532
Q ss_pred cCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHHH
Q 014624 312 ADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNIV 368 (421)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~ 368 (421)
..+..+++|+.|+|++|+|+.++. .+..+++|+.|++++|++++.|..+.
T Consensus 72 -------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 72 -------GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred -------hhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 236788999999999999999886 58899999999999999999986543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.1e-14 Score=124.89 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=70.1
Q ss_pred CCchhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccCCCCCchhhhhccCC
Q 014624 176 ALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYNRLKALPEAVGKIHT 255 (421)
Q Consensus 176 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~ 255 (421)
.+|..+..+++|+.|++++|.+..+| .+..+++|+.|++++|.++.++..+..+++|+.|++++|+++.++ .+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 33444555555555555555555554 445555556666666655555555555566777777777766665 4566677
Q ss_pred CCeeecccccCCcCCc--ccCCCCCCcEEECcCCCCCC
Q 014624 256 LEVLSVRYNNIKQLPT--TMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 256 L~~L~l~~n~l~~l~~--~l~~~~~L~~L~L~~n~l~~ 291 (421)
|+.|++++|.++.++. .+..+++|++|++++|.+..
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7777777777776543 56677777777777776653
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=5.3e-12 Score=119.87 Aligned_cols=241 Identities=13% Similarity=0.200 Sum_probs=184.1
Q ss_pred hcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc-hhhcCCCCCC
Q 014624 112 IGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLRGNQISALP-VALSRLVRLE 188 (421)
Q Consensus 112 ~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~ 188 (421)
+..+..++.+.+.+. ++.+ ..+|.++ +|+.+.+..+ +..++. .|.. .+|+.+.+.+ .++.++ ..|..+++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 345577888888754 5655 3477775 7999999876 666654 5555 4799999986 677665 4788999999
Q ss_pred EEECCCCCCCCCccccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCC
Q 014624 189 ELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIK 267 (421)
Q Consensus 189 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~ 267 (421)
.+++..|++..++.....+.+|+.+.+..+ +..+ ...+..+++|+.+.+..+ ++.++.......+|+.+.+ .+.++
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVT 260 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCC
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCcc
Confidence 999999999988766666789999999754 5544 346788999999999864 5655543333378999999 45677
Q ss_pred cCC-cccCCCCCCcEEECcCCCCC-----CCc-hhhhccCcccEEEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCc
Q 014624 268 QLP-TTMSSLSSLRELDVSFNELE-----SVP-ESLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRV 339 (421)
Q Consensus 268 ~l~-~~l~~~~~L~~L~L~~n~l~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~ 339 (421)
.++ .+|.++++|+.+++.++.+. .++ ..+..+++|+.+.+.++ +..++ .+|.+|++|+.+.|.++ ++.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 764 68999999999999988765 343 46788999999999865 33332 46889999999999654 887
Q ss_pred cch-hhcCCCCCCEEEccCCCCCCCcH
Q 014624 340 LPD-SFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 340 l~~-~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
++. +|..+ +|+.+.+.+|.......
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred EcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 764 78899 99999999997655443
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=7.9e-12 Score=104.85 Aligned_cols=125 Identities=26% Similarity=0.452 Sum_probs=71.6
Q ss_pred EEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCcc-ccCCCccccccccccccCCCCcc-hhcCCcCccEEEcccCCC
Q 014624 166 YLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPD-SIGSLISLKKLIVETNDLEELPH-TIGQCSSLRELRVDYNRL 243 (421)
Q Consensus 166 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~l 243 (421)
.++++++.++.+|..+. ++|+.|++++|++..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|++
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34444444444433221 344444444444444332 23444455555555555544432 245566677777777777
Q ss_pred CCchh-hhhccCCCCeeecccccCCcCCc-ccCCCCCCcEEECcCCCCCCC
Q 014624 244 KALPE-AVGKIHTLEVLSVRYNNIKQLPT-TMSSLSSLRELDVSFNELESV 292 (421)
Q Consensus 244 ~~~~~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~L~~n~l~~~ 292 (421)
+.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66654 34667777888888887777664 356778888888888877643
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=9.5e-13 Score=123.81 Aligned_cols=181 Identities=23% Similarity=0.288 Sum_probs=90.6
Q ss_pred CCCCcEEECcCCCCCCCc-----hhhc-CCCCCCEEECCCCCCCCC--ccccCCCccccccccccccCCCC-----cchh
Q 014624 161 LLSLVYLDLRGNQISALP-----VALS-RLVRLEELDLGSNNLSSL--PDSIGSLISLKKLIVETNDLEEL-----PHTI 227 (421)
Q Consensus 161 l~~L~~L~l~~~~l~~l~-----~~~~-~~~~L~~L~l~~~~l~~~--~~~~~~l~~L~~L~l~~n~~~~~-----~~~~ 227 (421)
+++|+.|++++|.++... ..+. ..++|+.|++++|.+... ......+++|+.|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467888888888877422 2222 235788888888876531 11122234455555555555421 1111
Q ss_pred -cCCcCccEEEcccCCCCC-----chhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCCCchhh
Q 014624 228 -GQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESVPESL 296 (421)
Q Consensus 228 -~~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 296 (421)
...+.|+.|++++|.++. +...+..+++|++|++++|.++. +...+..+++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~---- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH----
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH----
Confidence 123445555555555442 22223344445555555544433 122333444444444444444322
Q ss_pred hccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccCCCCccch-hhcCC---CC--CCEEE--ccCCCCC
Q 014624 297 CFATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNNQIRVLPD-SFRML---SR--LRVLR--VQENPLE 361 (421)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l---~~--L~~L~--l~~n~~~ 361 (421)
+...++..+..+++|++|+|++|.|+.... .+..+ .. ++.+. +.++.++
T Consensus 227 ----------------g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 227 ----------------AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ----------------HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred ----------------HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 112344556677899999999999985432 23222 21 66665 5555554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=6.5e-11 Score=98.84 Aligned_cols=103 Identities=25% Similarity=0.402 Sum_probs=57.1
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCchh-hhCCCCCcEEECc
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPDS-IGDLLSLVYLDLR 170 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~ 170 (421)
+.++++++.+..+ |..+. ++|++|++++|.+..+ +..|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 15 ~~l~~~~n~l~~i---P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASV---PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSC---CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCcc---CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4556665544333 23222 5566666666666655 34555666666666666666655443 3555666666666
Q ss_pred CCCCCCCchh-hcCCCCCCEEECCCCCCCCC
Q 014624 171 GNQISALPVA-LSRLVRLEELDLGSNNLSSL 200 (421)
Q Consensus 171 ~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~ 200 (421)
+|.++.+|.. +..+++|+.|++++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6666655543 55555666666666555543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.5e-12 Score=122.52 Aligned_cols=155 Identities=26% Similarity=0.336 Sum_probs=116.6
Q ss_pred CCCCcEEEccCCCCCCC-----chhhh-CCCCCcEEECcCCCCCC--CchhhcCCCCCCEEECCCCCCCCC-----cccc
Q 014624 138 LSSLKKLDLHANRIIEL-----PDSIG-DLLSLVYLDLRGNQISA--LPVALSRLVRLEELDLGSNNLSSL-----PDSI 204 (421)
Q Consensus 138 l~~L~~L~L~~~~i~~l-----~~~~~-~l~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~-----~~~~ 204 (421)
+++|++|++++|.++.. ...+. ..++|++|++++|.++. +......+++|+.|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998842 22222 23699999999999874 222334456899999999988732 2222
Q ss_pred -CCCccccccccccccCCC-----CcchhcCCcCccEEEcccCCCCC-----chhhhhccCCCCeeecccccCCc-----
Q 014624 205 -GSLISLKKLIVETNDLEE-----LPHTIGQCSSLRELRVDYNRLKA-----LPEAVGKIHTLEVLSVRYNNIKQ----- 268 (421)
Q Consensus 205 -~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~~~~L~~L~l~~n~l~~----- 268 (421)
...++|++|++++|.++. ++..+..+++|++|++++|.++. +...+..+++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999998873 34456778899999999999874 34556777899999999999985
Q ss_pred CCcccCCCCCCcEEECcCCCCCCC
Q 014624 269 LPTTMSSLSSLRELDVSFNELESV 292 (421)
Q Consensus 269 l~~~l~~~~~L~~L~L~~n~l~~~ 292 (421)
+...+..+++|++|+|++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 335566778999999999998754
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=7.8e-11 Score=98.00 Aligned_cols=101 Identities=28% Similarity=0.438 Sum_probs=51.5
Q ss_pred cEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEECc
Q 014624 93 RDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLDLR 170 (421)
Q Consensus 93 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~ 170 (421)
++++++++.+..+ |..+ .++|++|++++|.++.+ +..|.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 12 ~~l~~s~n~l~~i---p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLASV---PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSSC---CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcc---CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4555555544332 2222 24555555555555554 3345555555555555555555443 23455555555555
Q ss_pred CCCCCCCch-hhcCCCCCCEEECCCCCCC
Q 014624 171 GNQISALPV-ALSRLVRLEELDLGSNNLS 198 (421)
Q Consensus 171 ~~~l~~l~~-~~~~~~~L~~L~l~~~~l~ 198 (421)
+|.++.++. .+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555555543 2445555555555555444
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.7e-10 Score=107.58 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=73.1
Q ss_pred EEEcccC-CCCCchhhhhccCCCCeeeccc-ccCCcCC-cccCCCCCCcEEECcCCCCCCCchhhhccCcccEEEccCCc
Q 014624 235 ELRVDYN-RLKALPEAVGKIHTLEVLSVRY-NNIKQLP-TTMSSLSSLRELDVSFNELESVPESLCFATTLVKMNIGNNF 311 (421)
Q Consensus 235 ~L~l~~~-~l~~~~~~l~~~~~L~~L~l~~-n~l~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~~~ 311 (421)
.++++++ +++.+|. +..+.+|+.|+|++ |.++.++ ..|.++++|+.|+|++|.++.++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~------------------ 72 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA------------------ 72 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC------------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC------------------
Confidence 3455555 6666666 66666666666664 6666654 45666666666766666665543
Q ss_pred cCCCccchhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCCCCCcH
Q 014624 312 ADLRALPRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPLEVPPR 365 (421)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 365 (421)
|..|..+++|+.|+|++|+|+.+|........|+.|++.+|++.|.|.
T Consensus 73 ------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 73 ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp ------TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ------HHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 234677888899999999888887643333349999999999998875
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=1.8e-09 Score=102.49 Aligned_cols=259 Identities=16% Similarity=0.217 Sum_probs=149.3
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCC------------CC-
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHAN------------RI- 151 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~------------~i- 151 (421)
.....+|+++.+..+ +..+. ...|.+|.+|+.+++.++ ++.+ ..+|.++.+|+.+.+..+ ..
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~--~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIG--EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEEC--TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCC-ccCcc--hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 345667888888642 44443 346778888888888654 5544 346677777766655432 11
Q ss_pred --------CCC-chhhhCCCCCcEEECcCCCCCCCc-hhhcCCCCCCEEECCCCCCCCCc-cccCCCccccccccccccC
Q 014624 152 --------IEL-PDSIGDLLSLVYLDLRGNQISALP-VALSRLVRLEELDLGSNNLSSLP-DSIGSLISLKKLIVETNDL 220 (421)
Q Consensus 152 --------~~l-~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~ 220 (421)
..+ ...|..+.+|+.+.+.++ +..++ ..+..+.+|+.+++..+ +..++ ..+..+..|+.+.+..+..
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 111 135667888999988764 34443 35677888888888765 44332 3455666666665544321
Q ss_pred CCCcc-----------------------hhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCCcccCCCC
Q 014624 221 EELPH-----------------------TIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLPTTMSSLS 277 (421)
Q Consensus 221 ~~~~~-----------------------~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~ 277 (421)
. +.. .+..+..++.+.+..+...--...+..+..++.+......+. ...+..+.
T Consensus 221 ~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~ 297 (394)
T 4fs7_A 221 Y-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCS 297 (394)
T ss_dssp E-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCT
T ss_pred E-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccc
Confidence 1 111 223334444444433322211122333444444444332211 13566777
Q ss_pred CCcEEECcCCCCCCCch-hhhccCcccEEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEE
Q 014624 278 SLRELDVSFNELESVPE-SLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLR 354 (421)
Q Consensus 278 ~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~ 354 (421)
+|+.+.+..+ ++.++. .+..+.+|+.+++.++ +..+ ..+|.+|.+|+.+++..+ ++.++. +|..|++|+.++
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 7888877644 555543 4566788888888655 2333 246778888888888765 777764 788888888888
Q ss_pred ccCC
Q 014624 355 VQEN 358 (421)
Q Consensus 355 l~~n 358 (421)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 7643
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.3e-08 Score=96.52 Aligned_cols=257 Identities=12% Similarity=0.222 Sum_probs=149.3
Q ss_pred CCcEEEcCCcccccccccchhhcCCCCCCEEEccCCc---CCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCc
Q 014624 91 GTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENR---IVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLV 165 (421)
Q Consensus 91 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~---l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~ 165 (421)
.|+.+.+-.. +..+. ...|.+|.+|+.+.+.++. ++.+ ..+|.++.+|+.+.+..+ ++.++ ..+..+.+|+
T Consensus 65 ~L~sI~iP~s-vt~Ig--~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIG--SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT-CCEEC--TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCC-eeEEh--HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 4777777542 33443 3567788888888887653 5555 347777788877776654 44443 3566777788
Q ss_pred EEECcCCCCCCCc-hhhcCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchhcCCcCccEEEcccC---
Q 014624 166 YLDLRGNQISALP-VALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTIGQCSSLRELRVDYN--- 241 (421)
Q Consensus 166 ~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~--- 241 (421)
.+.+... +..++ ..+..+..|+.+.+..+ +..+.........|+.+.+..+-..--...+..+..+........
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccc
Confidence 7777543 33333 24566677777776553 333322222233455544433211111112222333332221111
Q ss_pred ---------------------------------CCCCch-hhhhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCC
Q 014624 242 ---------------------------------RLKALP-EAVGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFN 287 (421)
Q Consensus 242 ---------------------------------~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n 287 (421)
.++.+. ..+..+..|+.+.+..+...--...+.+++.|+.+.+. +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-T
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-C
Confidence 111111 23456677777777654332223567788888888886 4
Q ss_pred CCCCCch-hhhccCcccEEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCC
Q 014624 288 ELESVPE-SLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQEN 358 (421)
Q Consensus 288 ~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n 358 (421)
.++.++. .+..+.+|+.+.+..+- ..+ ..+|.+|.+|+.+.|.. .++.++. +|..|.+|+.+++.++
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~v---~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEGI---TQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred cccccCceeecCCCCcCEEEeCCcc---cEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 5665554 55667888888887652 233 24678888898888864 4777764 7888888988888876
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.04 E-value=4.5e-09 Score=99.80 Aligned_cols=247 Identities=13% Similarity=0.155 Sum_probs=154.5
Q ss_pred chhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCC------------CC
Q 014624 109 PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGN------------QI 174 (421)
Q Consensus 109 ~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~------------~l 174 (421)
...|.+|.+|+++.+..+ ++.+ ..+|.+|.+|+.+++..+ +..++ ..+..+..|+.+.+..+ ..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 357889999999999754 7777 458999999999999765 55554 35667777776655432 11
Q ss_pred C---------CC-chhhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccCCCC-cchhcCCcCccEEEcccCC
Q 014624 175 S---------AL-PVALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNR 242 (421)
Q Consensus 175 ~---------~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~ 242 (421)
. .+ ...|..+++|+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+.
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 1 11 135677899999999865 3434 355778899999988765 3322 2456667777777665432
Q ss_pred CCCchhh-----------------------hhccCCCCeeecccccCCcCCcccCCCCCCcEEECcCCCCCCCchhhhcc
Q 014624 243 LKALPEA-----------------------VGKIHTLEVLSVRYNNIKQLPTTMSSLSSLRELDVSFNELESVPESLCFA 299 (421)
Q Consensus 243 l~~~~~~-----------------------l~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 299 (421)
.. +... +..+..++.+.+..+...--...+..+..++.+......+. ...+..+
T Consensus 220 ~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~ 296 (394)
T 4fs7_A 220 YY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGC 296 (394)
T ss_dssp CE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTC
T ss_pred eE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--ccccccc
Confidence 21 1111 22333444444433322112234445555555554433221 1345667
Q ss_pred CcccEEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHHH
Q 014624 300 TTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRNI 367 (421)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~ 367 (421)
.+|+.+.+.++- ..+ ..+|.+|.+|+.++|.+ .++.++. +|..|.+|+.+.+..+ ++.+....
T Consensus 297 ~~L~~i~l~~~i---~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 297 SSLTEVKLLDSV---KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp TTCCEEEECTTC---CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred cccccccccccc---ceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 888888887662 333 24688899999999965 4777764 7889999999999765 55544433
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.97 E-value=2.6e-08 Score=94.48 Aligned_cols=265 Identities=12% Similarity=0.209 Sum_probs=160.3
Q ss_pred ccCCCCCcEEEcCCccccccccc-chhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWL-PDSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLL 162 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~ 162 (421)
+...++|+++.+..+.-..+..+ ...|..+..|+.+.+..+ +..+ ..+|.++.+|+.+.+... +..++ ..+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 44667899999876543333333 346778888888877654 4544 347788889999888654 33333 3566778
Q ss_pred CCcEEECcCCCCCCCchhhcCCCCCCEEECCCCCCCCCccccCCCcccccccccc-------------------------
Q 014624 163 SLVYLDLRGNQISALPVALSRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVET------------------------- 217 (421)
Q Consensus 163 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~------------------------- 217 (421)
.|+.+.+..+ ++.+....-....|+.+.+..+-...-...+..+..+.......
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP 239 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred ccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccccccc
Confidence 8888887653 44443322223456666655431111111122222222211100
Q ss_pred -----------ccCCCC-cchhcCCcCccEEEcccCCCCCchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEEC
Q 014624 218 -----------NDLEEL-PHTIGQCSSLRELRVDYNRLKALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDV 284 (421)
Q Consensus 218 -----------n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L 284 (421)
+.+..+ ...+..+..|+.+.+..+...--...+.++..|+.+.+. +.++.++ ..|.++.+|+++++
T Consensus 240 ~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 240 SQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp TTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 001111 235677888999988655433223466788999999996 4566665 58899999999999
Q ss_pred cCCCCCCCch-hhhccCcccEEEccCCccCCCcc-chhhcCCCCCcEEeCccCCCCccchhhcCCCCCCEEEccCCCC
Q 014624 285 SFNELESVPE-SLCFATTLVKMNIGNNFADLRAL-PRSIGNLEMLEELDISNNQIRVLPDSFRMLSRLRVLRVQENPL 360 (421)
Q Consensus 285 ~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~~ 360 (421)
..+ ++.+.. .+.++.+|+.+.+..+- ..+ ..+|.+|.+|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~sv---~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSSV---TKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTTC---CBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECccc---CEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 854 666654 67788999999997763 333 357899999999999987432 14567788888888776644
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=6.2e-09 Score=96.99 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=81.0
Q ss_pred cEEEcCCc-ccccccccchhhcCCCCCCEEEccC-CcCCcCc-hhhcCCCCCcEEEccCCCCCCCch-hhhCCCCCcEEE
Q 014624 93 RDLNLQNK-LMDNIEWLPDSIGKLSSLVSLDLSE-NRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLSLVYLD 168 (421)
Q Consensus 93 ~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~-~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~ 168 (421)
..++++++ .+. .+|. +..+++|++|+|++ |.+..++ ..|.++++|++|+|++|.++.++. .|..+++|++|+
T Consensus 11 ~~v~~~~~n~l~---~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD---SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT---TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC---ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 34667665 444 4566 88888999999986 8888875 578899999999999999887654 678899999999
Q ss_pred CcCCCCCCCchhhcCCCCCCEEECCCCCCCCC
Q 014624 169 LRGNQISALPVALSRLVRLEELDLGSNNLSSL 200 (421)
Q Consensus 169 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~ 200 (421)
|++|+++.+|........|+.|++.+|.+...
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99999998876443333499999999888743
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=4.8e-09 Score=97.81 Aligned_cols=188 Identities=12% Similarity=0.144 Sum_probs=104.2
Q ss_pred cCCCCCcEEEcCCccccc------ccccchhhcCCCCCCEEEccCCcCC----------cCchhhcCCCCCcEEEccCCC
Q 014624 87 SSKKGTRDLNLQNKLMDN------IEWLPDSIGKLSSLVSLDLSENRIV----------AVPATIGGLSSLKKLDLHANR 150 (421)
Q Consensus 87 ~~~~~L~~L~l~~~~~~~------~~~l~~~~~~~~~L~~L~l~~~~l~----------~~~~~l~~l~~L~~L~L~~~~ 150 (421)
.....++.|.+....... +..+......+++|+.|.+.+.... .+...+..+|+|+.|.++++.
T Consensus 104 ~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 344567788877654331 1112333456778888887654321 233455667777777777663
Q ss_pred CCCCchhhhCCCCCcEEECcCCCCCCCc-hhh--cCCCCCCEEECCCCCCCCCccccCCCccccccccccccCCCCcchh
Q 014624 151 IIELPDSIGDLLSLVYLDLRGNQISALP-VAL--SRLVRLEELDLGSNNLSSLPDSIGSLISLKKLIVETNDLEELPHTI 227 (421)
Q Consensus 151 i~~l~~~~~~l~~L~~L~l~~~~l~~l~-~~~--~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 227 (421)
-..++. + .+++|++|++..+.++.-. ..+ ..+|+|+.|+++.+.-..... . .+..+...+
T Consensus 184 ~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-----~----------~~~~l~~~l 246 (362)
T 2ra8_A 184 NLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-----G----------DMNVFRPLF 246 (362)
T ss_dssp TCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-----S----------CGGGTGGGS
T ss_pred Cceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-----h----------hHHHHHHHH
Confidence 123332 2 3677777777776655211 122 256777777764310000000 0 000111111
Q ss_pred --cCCcCccEEEcccCCCCC-chhhh---hccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCC
Q 014624 228 --GQCSSLRELRVDYNRLKA-LPEAV---GKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELES 291 (421)
Q Consensus 228 --~~~~~L~~L~l~~~~l~~-~~~~l---~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~ 291 (421)
..+++|+.|++.+|.+.. ....+ ..+++|++|+++.|.++. ++..+..+++|+.|++++|.+++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 246788888888877763 11122 346788888888887765 23344567888999998888764
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=2.2e-09 Score=90.40 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=53.0
Q ss_pred CCCCCCcEEECcCCCCCC-----CchhhhccCcccEEEccCCccC---CCccchhhcCCCCCcEEeC--ccCCCCc----
Q 014624 274 SSLSSLRELDVSFNELES-----VPESLCFATTLVKMNIGNNFAD---LRALPRSIGNLEMLEELDI--SNNQIRV---- 339 (421)
Q Consensus 274 ~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~L--~~n~l~~---- 339 (421)
...++|++|+|++|.+.+ +...+...++|++|+|++|... ...+...+...++|++|+| ++|.|+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 333444444444444432 1223333344444444444222 1234556677788999999 8899983
Q ss_pred -cchhhcCCCCCCEEEccCCCCC
Q 014624 340 -LPDSFRMLSRLRVLRVQENPLE 361 (421)
Q Consensus 340 -l~~~~~~l~~L~~L~l~~n~~~ 361 (421)
+...+...++|+.|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 4567778899999999999865
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=7.5e-09 Score=96.48 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCCCcEEeCccCCCCc-----cchhhcCCCCCCEEEccCCCCC
Q 014624 323 NLEMLEELDISNNQIRV-----LPDSFRMLSRLRVLRVQENPLE 361 (421)
Q Consensus 323 ~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~~~ 361 (421)
.+++|++|+|+.|.++. ++..+..+++|+.|++++|.++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35667777777777663 3334455677777777777655
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=2.8e-06 Score=79.97 Aligned_cols=255 Identities=10% Similarity=0.190 Sum_probs=133.4
Q ss_pred CCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCchhhhCCCCCcE
Q 014624 88 SKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPDSIGDLLSLVY 166 (421)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 166 (421)
...+|+.+.+.. .+..+. ...|.+|.+|+.+++..+ ++.+. .+|.++ +|+.+.+..+ +..+........+|+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig--~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIG--EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGCSEEEECT-TEEEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred cccCCEEEEeCC-CccChH--HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 445788888865 233333 346888889999988654 66663 467666 5777776543 4444432223347888
Q ss_pred EECcCCCCCCCch-hhcCCCCCCEEECCCCCCCCC-ccccCCCccccccccccccC------------------------
Q 014624 167 LDLRGNQISALPV-ALSRLVRLEELDLGSNNLSSL-PDSIGSLISLKKLIVETNDL------------------------ 220 (421)
Q Consensus 167 L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~------------------------ 220 (421)
+.+..+ ++.+.. .+.. ..++.+.+..+ +..+ ...+..+..++.+.+..+..
T Consensus 118 i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 877653 332222 2222 23444443332 1111 11222333333332221110
Q ss_pred ------------CCCcchhcCCcCccEEEcccCCCCCch-hhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcC
Q 014624 221 ------------EELPHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSF 286 (421)
Q Consensus 221 ------------~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~ 286 (421)
......+..+..++.+.+..+ +..+. ..+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+..
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 001122333445555555332 22222 33455666777776554 44442 4566777777777754
Q ss_pred CCCCCCch-hhhccCcccEEEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCccch-hhcCCCCCCEEEccC
Q 014624 287 NELESVPE-SLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQE 357 (421)
Q Consensus 287 n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~ 357 (421)
.+..++. .+..+.+|+.+.+.++ .+..++ .+|.+|.+|+.+.|..+ ++.++. +|..|.+|+.+.+..
T Consensus 273 -~i~~i~~~aF~~c~~L~~i~l~~~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 273 -KVKTVPYLLCSGCSNLTKVVMDNS--AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp -CCSEECTTTTTTCTTCCEEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred -cceecccccccccccccccccccc--ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 3444443 4556777777777665 233332 35677777777777543 666654 677777777776643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=3.9e-08 Score=82.69 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=70.5
Q ss_pred cCCCCCcEEEcCCc-cccc--ccccchhhcCCCCCCEEEccCCcCCc-----CchhhcCCCCCcEEEccCCCCCC-----
Q 014624 87 SSKKGTRDLNLQNK-LMDN--IEWLPDSIGKLSSLVSLDLSENRIVA-----VPATIGGLSSLKKLDLHANRIIE----- 153 (421)
Q Consensus 87 ~~~~~L~~L~l~~~-~~~~--~~~l~~~~~~~~~L~~L~l~~~~l~~-----~~~~l~~l~~L~~L~L~~~~i~~----- 153 (421)
...+.|++|++++| .+.+ +..+...+...+.|++|++++|.+.. +...+...++|++|+|++|.++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34567777777777 6554 33345566667777777777777663 23445556677777777777763
Q ss_pred CchhhhCCCCCcEEEC--cCCCCCC-----CchhhcCCCCCCEEECCCCCCC
Q 014624 154 LPDSIGDLLSLVYLDL--RGNQISA-----LPVALSRLVRLEELDLGSNNLS 198 (421)
Q Consensus 154 l~~~~~~l~~L~~L~l--~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~ 198 (421)
+...+...++|++|++ ++|.+.. +...+...+.|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3345556667777777 6666663 3334555566777777766543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.53 E-value=7.2e-06 Score=77.09 Aligned_cols=249 Identities=14% Similarity=0.186 Sum_probs=146.9
Q ss_pred ccCCCCCcEEEcCCcccccccccchhhcCCCCCCEEEccCCcCCcCc-hhhcCCCCCcEEEccCCCCCCCch-hhhCCCC
Q 014624 86 VSSKKGTRDLNLQNKLMDNIEWLPDSIGKLSSLVSLDLSENRIVAVP-ATIGGLSSLKKLDLHANRIIELPD-SIGDLLS 163 (421)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~l~~L~~L~L~~~~i~~l~~-~~~~l~~ 163 (421)
...+.+|+.+++..+ +..+. ...|.++ .|+.+.+..+ +..+. .+|.. .+|+.+.+..+ +..+.. .+.. .+
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig--~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~-~~ 136 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIG--DGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYN-SS 136 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEEC--TTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CC
T ss_pred hhCCCCCCEEEeCCc-ceEec--hhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-ccccccccccc-ce
Confidence 345678888888653 33333 2456555 5777776543 44443 34544 36888877654 222222 2222 23
Q ss_pred CcEEECcCCCCCCCc-hhhcCCCCCCEEECCCC------------------------------------CCCCCccccCC
Q 014624 164 LVYLDLRGNQISALP-VALSRLVRLEELDLGSN------------------------------------NLSSLPDSIGS 206 (421)
Q Consensus 164 L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~------------------------------------~l~~~~~~~~~ 206 (421)
++.+.+..+ ++.+. ..+..+..++.+.+... ........+..
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~ 215 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSY 215 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTT
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccc
Confidence 444433321 22211 12233333333333221 11111122344
Q ss_pred CccccccccccccCCCC-cchhcCCcCccEEEcccCCCCCch-hhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEE
Q 014624 207 LISLKKLIVETNDLEEL-PHTIGQCSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELD 283 (421)
Q Consensus 207 l~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~ 283 (421)
+..++.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+.. .+..++ ..|.++.+|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 555666655433 2222 245677889999998754 55554 4567788999999965 455554 5789999999999
Q ss_pred CcCCCCCCCch-hhhccCcccEEEccCCccCCCccc-hhhcCCCCCcEEeCccCCCCccch-hhcCCCCC
Q 014624 284 VSFNELESVPE-SLCFATTLVKMNIGNNFADLRALP-RSIGNLEMLEELDISNNQIRVLPD-SFRMLSRL 350 (421)
Q Consensus 284 L~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L 350 (421)
+.++.++.++. .+.++.+|+.+.+..+- ..+. .+|.+|.+|+.+.+..+ ++.+.. +|..++.+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~l---~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTAL---KTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCccc---cEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99998987764 66788999999998763 3332 46889999999998654 776654 56666433
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=2.6e-06 Score=70.01 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCeeecccccCCcC-CcccCCCCCCcEEECcCCC-CCCCchhhhccCcccEEEccCCccCCCccchhhcC----CCCCc
Q 014624 255 TLEVLSVRYNNIKQL-PTTMSSLSSLRELDVSFNE-LESVPESLCFATTLVKMNIGNNFADLRALPRSIGN----LEMLE 328 (421)
Q Consensus 255 ~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----l~~L~ 328 (421)
.|+.||+++|.++.. -..+.++++|++|+|++|. +++. --..+.. +++|+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~------------------------gL~~L~~~~~~~~~L~ 117 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG------------------------CLERLSQLENLQKSML 117 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH------------------------HHHHHHTCHHHHHHCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH------------------------HHHHHHhcccccCCCC
Confidence 466666666665541 1334556666666666653 4421 1112222 24677
Q ss_pred EEeCccC-CCCccc-hhhcCCCCCCEEEccCCC
Q 014624 329 ELDISNN-QIRVLP-DSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 329 ~L~L~~n-~l~~l~-~~~~~l~~L~~L~l~~n~ 359 (421)
+|+|++| +||+-. ..+..+++|+.|++++|+
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 7777777 576322 245567777777777776
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.6e-06 Score=69.92 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=59.9
Q ss_pred CcCccEEEcccCCCCCch-hhhhccCCCCeeeccccc-CCcC-CcccCC----CCCCcEEECcCCC-CCCCchhhhccCc
Q 014624 230 CSSLRELRVDYNRLKALP-EAVGKIHTLEVLSVRYNN-IKQL-PTTMSS----LSSLRELDVSFNE-LESVPESLCFATT 301 (421)
Q Consensus 230 ~~~L~~L~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~-l~~l-~~~l~~----~~~L~~L~L~~n~-l~~~~~~~~~~~~ 301 (421)
...|+.|++++|.+++.. ..+..+++|++|++++|. +++- -..+.. +++|++|+|++|. +++.. +
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l----- 132 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--I----- 132 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--H-----
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--H-----
Confidence 347999999999988432 456889999999999994 6652 123343 3478999999885 66431 1
Q ss_pred ccEEEccCCccCCCccchhhcCCCCCcEEeCccC-CCCc
Q 014624 302 LVKMNIGNNFADLRALPRSIGNLEMLEELDISNN-QIRV 339 (421)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~ 339 (421)
..+..+++|++|+|++| .|++
T Consensus 133 -----------------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 -----------------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -----------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred -----------------HHHhcCCCCCEEECCCCCCCCc
Confidence 22445677777888777 5664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=8.8e-06 Score=71.94 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=57.5
Q ss_pred cCCCCCCEEEccCCcCCcCc---hhhcCCCCCcEEEccCCCCCCCchhhhCCC--CCcEEECcCCCCCC-Cc-------h
Q 014624 113 GKLSSLVSLDLSENRIVAVP---ATIGGLSSLKKLDLHANRIIELPDSIGDLL--SLVYLDLRGNQISA-LP-------V 179 (421)
Q Consensus 113 ~~~~~L~~L~l~~~~l~~~~---~~l~~l~~L~~L~L~~~~i~~l~~~~~~l~--~L~~L~l~~~~l~~-l~-------~ 179 (421)
.++++|++|++++|.+..++ ..+..+++|+.|+|++|.++.+ ..+..+. +|++|++++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46788888888888887653 4556788888888888888866 3333343 88888888888763 33 2
Q ss_pred hhcCCCCCCEEEC
Q 014624 180 ALSRLVRLEELDL 192 (421)
Q Consensus 180 ~~~~~~~L~~L~l 192 (421)
.+..+|+|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4677888888764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=1.9e-06 Score=76.22 Aligned_cols=93 Identities=27% Similarity=0.354 Sum_probs=65.7
Q ss_pred EEccCCcCCcCch----hhcCCCCCcEEEccCCCCCCCc---hhhhCCCCCcEEECcCCCCCCCchhhcCCC--CCCEEE
Q 014624 121 LDLSENRIVAVPA----TIGGLSSLKKLDLHANRIIELP---DSIGDLLSLVYLDLRGNQISALPVALSRLV--RLEELD 191 (421)
Q Consensus 121 L~l~~~~l~~~~~----~l~~l~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~ 191 (421)
++++.|....++. ...++++|+.|+|++|.++.++ ..+..+++|+.|+|++|.++.+. .+..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence 4455554333322 2357899999999999998654 55678999999999999998763 233333 899999
Q ss_pred CCCCCCCC-Cc-------cccCCCccccccc
Q 014624 192 LGSNNLSS-LP-------DSIGSLISLKKLI 214 (421)
Q Consensus 192 l~~~~l~~-~~-------~~~~~l~~L~~L~ 214 (421)
+++|.+.. +| ..+..+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99998873 33 2345677777775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=5.4e-06 Score=69.39 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCcCccEEEcccC-CCCC-----chhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCCCCCCchhhh
Q 014624 229 QCSSLRELRVDYN-RLKA-----LPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNELESVPESLC 297 (421)
Q Consensus 229 ~~~~L~~L~l~~~-~l~~-----~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 297 (421)
.-+.|++|+++++ ++.. +...+.....|+.|+|++|.+.. +...+...+.|++|+|++|.|++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~----- 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE----- 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH-----
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH-----
Confidence 3445555555553 4431 22334444455555555555543 223344445555555555555432
Q ss_pred ccCcccEEEccCCccCCCccchhhcCCCCCcEEeCccC---CCC-----ccchhhcCCCCCCEEEccCCC
Q 014624 298 FATTLVKMNIGNNFADLRALPRSIGNLEMLEELDISNN---QIR-----VLPDSFRMLSRLRVLRVQENP 359 (421)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n---~l~-----~l~~~~~~l~~L~~L~l~~n~ 359 (421)
+...+.+++...+.|++|+|++| .+. .+.+.+..-++|..|+++.|.
T Consensus 114 ---------------Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 ---------------LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp ---------------HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred ---------------HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22334556677778999999876 344 244567778899999998664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=7.6e-05 Score=62.41 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=48.6
Q ss_pred cchhcCCcCccEEEcccCCCC-----CchhhhhccCCCCeeecccccCCc-----CCcccCCCCCCcEEECcCCC
Q 014624 224 PHTIGQCSSLRELRVDYNRLK-----ALPEAVGKIHTLEVLSVRYNNIKQ-----LPTTMSSLSSLRELDVSFNE 288 (421)
Q Consensus 224 ~~~~~~~~~L~~L~l~~~~l~-----~~~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~L~~n~ 288 (421)
...+.....|+.|+|++|++. .+...+...+.|++|+|++|.+.. +...+.....|++|+|+++.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 345556677888888888887 344566777889999999998875 34567777889999998653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.48 E-value=0.00017 Score=56.26 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=37.9
Q ss_pred CCCcEEeCccCCCCccch-hhcCCCCCCEEEccCCCCCCCcHH
Q 014624 325 EMLEELDISNNQIRVLPD-SFRMLSRLRVLRVQENPLEVPPRN 366 (421)
Q Consensus 325 ~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~ 366 (421)
++|+.|+|++|+|+.++. .|..+++|+.|+|.+||+.|+|..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 468999999999999986 678899999999999999999863
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.34 E-value=0.0049 Score=47.88 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEcccCCCC--CchhhhhccCCCCeeecccccCCcCC-cccCCCCCCcEEECcCCCCC
Q 014624 235 ELRVDYNRLK--ALPEAVGKIHTLEVLSVRYNNIKQLP-TTMSSLSSLRELDVSFNELE 290 (421)
Q Consensus 235 ~L~l~~~~l~--~~~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~L~~n~l~ 290 (421)
.++.++++++ .+|..+. .+++.|+|++|.++.++ ..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6664332 35677777777777765 34566677777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.17 E-value=14 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=20.5
Q ss_pred hhhcCCCCCCEEEccCCcCCcC-chhhcCCCCCcEEEccC
Q 014624 110 DSIGKLSSLVSLDLSENRIVAV-PATIGGLSSLKKLDLHA 148 (421)
Q Consensus 110 ~~~~~~~~L~~L~l~~~~l~~~-~~~l~~l~~L~~L~L~~ 148 (421)
..|..|..|+.+.+..+ ++.+ ..+|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34556666666666543 3333 23555666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.89 E-value=33 Score=24.47 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=27.5
Q ss_pred cCCcC-chhhcCCCCCcEEEccCCCCCCCc-hhhhCCCCCcEEECcCC
Q 014624 127 RIVAV-PATIGGLSSLKKLDLHANRIIELP-DSIGDLLSLVYLDLRGN 172 (421)
Q Consensus 127 ~l~~~-~~~l~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~ 172 (421)
.++.+ ..+|.+|.+|+.+.+..+ ++.+. ..|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455 346777777777777654 34443 35666777777776553
No 167
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=24.68 E-value=17 Score=17.92 Aligned_cols=7 Identities=57% Similarity=1.142 Sum_probs=4.3
Q ss_pred ccccccC
Q 014624 2 EWELLEP 8 (421)
Q Consensus 2 ~~~~~~~ 8 (421)
|||..+|
T Consensus 2 ewel~ke 8 (26)
T 4ggd_C 2 EWELSKE 8 (26)
T ss_pred ccccchh
Confidence 6766554
Done!