Query 014627
Match_columns 421
No_of_seqs 216 out of 1564
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02857 octaprenyl-diphosphat 100.0 6.9E-88 1.5E-92 688.4 39.4 416 2-421 1-416 (416)
2 TIGR02749 prenyl_cyano solanes 100.0 1.3E-68 2.9E-73 533.8 37.6 321 98-421 2-322 (322)
3 PLN02890 geranyl diphosphate s 100.0 1.1E-67 2.3E-72 539.7 37.9 324 98-421 80-422 (422)
4 TIGR02748 GerC3_HepT heptapren 100.0 6.8E-67 1.5E-71 521.2 36.9 315 100-421 3-319 (319)
5 PRK10888 octaprenyl diphosphat 100.0 1E-66 2.2E-71 520.2 37.6 317 98-420 2-322 (323)
6 CHL00151 preA prenyl transfera 100.0 5.8E-67 1.3E-71 522.5 35.8 318 100-420 5-322 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 8.6E-66 1.9E-70 513.6 35.8 316 102-421 3-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 7.5E-60 1.6E-64 468.3 30.7 313 99-419 64-384 (384)
9 PRK10581 geranyltranstransfera 100.0 8.3E-59 1.8E-63 458.6 31.5 277 104-420 5-298 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 2.1E-54 4.6E-59 419.6 29.2 254 125-419 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 1.3E-54 2.8E-59 421.5 20.8 251 129-386 2-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1E-40 2.2E-45 317.9 27.2 233 143-419 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 3.4E-36 7.3E-41 277.8 20.6 272 126-410 21-299 (322)
14 KOG0711 Polyprenyl synthetase 100.0 5.9E-35 1.3E-39 281.2 23.1 289 127-420 39-346 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 5.2E-22 1.1E-26 184.9 28.9 223 169-415 13-240 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.5 0.0018 4E-08 61.1 13.0 105 165-277 32-137 (212)
17 TIGR01559 squal_synth farnesyl 97.0 0.03 6.4E-07 56.8 15.7 150 232-404 101-250 (336)
18 PF00494 SQS_PSY: Squalene/phy 96.4 0.17 3.7E-06 49.0 16.6 144 236-407 88-232 (267)
19 PLN02632 phytoene synthase 95.5 0.42 9.2E-06 48.4 14.7 137 240-403 141-279 (334)
20 TIGR03464 HpnC squalene syntha 95.3 0.73 1.6E-05 45.0 15.5 133 240-403 87-219 (266)
21 TIGR03465 HpnD squalene syntha 93.6 1 2.3E-05 43.9 12.1 134 239-403 85-218 (266)
22 cd00683 Trans_IPPS_HH Trans-Is 93.0 1.5 3.3E-05 42.5 12.2 134 239-402 93-226 (265)
23 cd00687 Terpene_cyclase_nonpla 92.2 12 0.00026 36.7 17.7 89 231-321 128-221 (303)
24 cd00868 Terpene_cyclase_C1 Ter 80.6 55 0.0012 31.3 18.2 87 232-320 122-214 (284)
25 COG1562 ERG9 Phytoene/squalene 76.0 49 0.0011 32.9 12.4 138 237-404 101-238 (288)
26 PRK10581 geranyltranstransfera 71.1 25 0.00055 35.0 9.1 62 168-229 205-278 (299)
27 PF03936 Terpene_synth_C: Terp 67.1 80 0.0017 29.9 11.5 85 234-319 139-228 (270)
28 PF06783 UPF0239: Uncharacteri 53.1 18 0.00039 29.3 3.4 29 291-319 14-42 (85)
29 TIGR01474 ubiA_proteo 4-hydrox 46.9 2.9E+02 0.0063 27.1 14.4 56 171-226 45-105 (281)
30 TIGR02748 GerC3_HepT heptapren 46.3 2.4E+02 0.0052 28.3 11.2 48 286-345 56-103 (319)
31 CHL00151 preA prenyl transfera 44.7 1.5E+02 0.0033 29.8 9.5 25 166-190 195-219 (323)
32 PLN02857 octaprenyl-diphosphat 42.4 1.8E+02 0.0039 30.6 9.8 24 168-191 290-313 (416)
33 PRK12884 ubiA prenyltransferas 41.1 3.4E+02 0.0074 26.2 18.2 157 169-348 40-199 (279)
34 PRK12872 ubiA prenyltransferas 39.1 3.7E+02 0.008 26.0 13.4 35 304-349 172-206 (285)
35 PRK09573 (S)-2,3-di-O-geranylg 37.8 3.9E+02 0.0085 26.0 16.3 54 171-224 42-98 (279)
36 PRK07566 bacteriochlorophyll/c 37.8 4.3E+02 0.0092 26.4 13.1 50 174-223 73-125 (314)
37 PF01040 UbiA: UbiA prenyltran 36.6 3.6E+02 0.0078 25.2 17.9 152 174-347 31-189 (257)
38 PF00348 polyprenyl_synt: Poly 31.2 4.8E+02 0.01 25.0 11.9 53 283-347 23-75 (260)
39 TIGR02749 prenyl_cyano solanes 29.2 5.8E+02 0.013 25.6 10.8 39 295-345 69-107 (322)
40 cd00685 Trans_IPPS_HT Trans-Is 29.0 5.2E+02 0.011 24.7 11.1 46 289-346 34-80 (259)
41 PRK12882 ubiA prenyltransferas 27.8 5.7E+02 0.012 24.8 17.2 56 171-226 43-101 (276)
42 PRK13591 ubiA prenyltransferas 27.7 6.4E+02 0.014 25.4 11.4 32 169-200 61-92 (307)
43 PRK13105 ubiA prenyltransferas 26.0 1.5E+02 0.0032 29.4 5.8 64 274-348 140-204 (282)
44 COG0142 IspA Geranylgeranyl py 25.8 6E+02 0.013 25.5 10.2 42 166-207 194-247 (322)
45 KOG2802 Membrane protein HUEL 24.4 1.6E+02 0.0035 30.5 5.7 43 273-320 371-415 (503)
46 TIGR02056 ChlG chlorophyll syn 24.4 7E+02 0.015 24.7 12.7 159 168-356 56-235 (306)
47 PRK10888 octaprenyl diphosphat 24.3 7.3E+02 0.016 24.9 14.2 48 286-345 57-104 (323)
48 cd00684 Terpene_cyclase_plant_ 22.4 1E+03 0.022 25.8 14.6 103 232-347 356-465 (542)
49 PF06304 DUF1048: Protein of u 20.1 63 0.0014 27.2 1.6 23 307-329 45-67 (103)
50 PRK12871 ubiA prenyltransferas 20.1 6.2E+02 0.013 25.1 8.9 86 258-346 1-102 (297)
No 1
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=6.9e-88 Score=688.45 Aligned_cols=416 Identities=76% Similarity=1.122 Sum_probs=391.2
Q ss_pred CccccccccccccccchhcccCCCCcccchhhhhhHhhhhccccccccccccccccccccccccccCCCCchhhhhhhcC
Q 014627 2 MSMTSHNLDFGRSVLDLVACGCSSSASIHRSSVRKIAMTGSRKSNRDCGARRLVCCRQNLARCRVYSTKTPETLLNEVGQ 81 (421)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (421)
|+|+|+|+|||++ +++|||||++.++|+.+|++++.+++.|+|+|+++ .++|||++++|+++++++....+....+
T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (416)
T PLN02857 1 MSMSCRNIDLGTS---LVACGCSSNASSRRRVVRNGATPVCKSCSRSYASS-LVTSRRDIGRCRVVSPSPETSLVNGIGQ 76 (416)
T ss_pred CCccccCCCCCcc---cccCCCccccccccccccccccccccccCcccccc-cchhccCcceeeccCCCCcccccCcccc
Confidence 8999999999999 66999999999999999999999999999999996 6999999999999988777777777766
Q ss_pred CCchhhhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCC
Q 014627 82 IPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGL 161 (421)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~ 161 (421)
.++....+++....++++.++++.+.++++.|++.|.+.+....|.+.++++|++..||||+||.|++++++++++..|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~ 156 (416)
T PLN02857 77 GPTVALDLKAESKEPISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGL 156 (416)
T ss_pred ccHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCC
Confidence 66666666666777899999999999999999999999999889999999999999999999999999999988765554
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 014627 162 KELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 241 (421)
Q Consensus 162 ~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~ 241 (421)
+...++++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+++++++.+.++++.+++++
T Consensus 157 ~~~~~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~ 236 (416)
T PLN02857 157 KELTTEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVI 236 (416)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44457789999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014627 242 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 321 (421)
Q Consensus 242 ~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d 321 (421)
..+++||+.|..+..+.+.++++|++++++|||+||+.+|++|++++|++++..+.+++||++||+||||+||++||+++
T Consensus 237 ~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~ 316 (416)
T PLN02857 237 KDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQS 316 (416)
T ss_pred HHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998888788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCC
Q 014627 322 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 401 (421)
Q Consensus 322 ~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 401 (421)
++++|||.|+||++||+|+|+++++++++++++++.+.+.+++++++++++|+++|++++|++.+++|.++|++.|+.||
T Consensus 317 ~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp 396 (416)
T PLN02857 317 TEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLP 396 (416)
T ss_pred HHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999989999999888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014627 402 RSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 402 ~~~~r~~L~~l~~~~~~R~~ 421 (421)
+++.++.|..|++++++|++
T Consensus 397 ~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 397 RGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999975
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=1.3e-68 Score=533.76 Aligned_cols=321 Identities=67% Similarity=1.020 Sum_probs=301.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014627 98 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 177 (421)
Q Consensus 98 ~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEl 177 (421)
+..+++..+..+++.|++.+.+.+.+..|.+.++.+|++..||||+||.|+++++++++.. ...++..+++|+++|+
T Consensus 2 ~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~---~~~~~~~~~~A~avEl 78 (322)
T TIGR02749 2 SATSLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQ---QELTPRHRRLAEITEM 78 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCC---ccccHHHHHHHHHHHH
Confidence 4556788899999999999999999989999999999999999999999999998876421 1234677899999999
Q ss_pred HHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014627 178 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 257 (421)
Q Consensus 178 lH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~ 257 (421)
||+||||||||||+|++|||+||+|.+||++.||++||||+++|++.++...+.++++.+++++..+++||+.|.....+
T Consensus 79 iH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~ 158 (322)
T TIGR02749 79 IHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFD 158 (322)
T ss_pred HHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999877767
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCc
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 337 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk 337 (421)
.++++++|++++.+|||+||+.+|++|++++|++++.++.+++||+++|+||||+||++||+++++.+|||.|+||++||
T Consensus 159 ~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk 238 (322)
T TIGR02749 159 SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGN 238 (322)
T ss_pred CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014627 338 LTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 417 (421)
Q Consensus 338 ~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~ 417 (421)
+|+|++++++..|++.+++.+...++++++++.+++.++|+++++++++++|.++|++.|+.+|+++.++.|..++++++
T Consensus 239 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 318 (322)
T TIGR02749 239 LTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVL 318 (322)
T ss_pred chHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999998888888888887788899999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014627 418 ERFV 421 (421)
Q Consensus 418 ~R~~ 421 (421)
+|.|
T Consensus 319 ~R~~ 322 (322)
T TIGR02749 319 SRLY 322 (322)
T ss_pred hcCC
Confidence 9986
No 3
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=1.1e-67 Score=539.73 Aligned_cols=324 Identities=41% Similarity=0.668 Sum_probs=300.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCC--CccchHHHHHHHHHHHhhhhCCc-----------cc
Q 014627 98 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAG--GKRLRPALVFLVSRATAELVGLK-----------EL 164 (421)
Q Consensus 98 ~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~g--GKrlRp~Lvll~a~a~~~~~g~~-----------~~ 164 (421)
...+++..+.++++.|++.|.+.+....|.+.++++|++..| |||+||.|+++++++++...+.. +.
T Consensus 80 ~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~ 159 (422)
T PLN02890 80 EQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASEL 159 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccch
Confidence 456778899999999999999999999999999999999888 99999999999998865211000 01
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Q 014627 165 TTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 244 (421)
Q Consensus 165 ~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l 244 (421)
.++++++|+++||||+||||||||||++++|||+||+|.+||++.||++||||+++++..++...+.++++.+++++..+
T Consensus 160 ~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l 239 (422)
T PLN02890 160 RTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHL 239 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 24578999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhh
Q 014627 245 ASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQ 324 (421)
Q Consensus 245 ~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~ 324 (421)
++||+.|.....+..+++++|++++++|||+||+.+|++||+++|++++..+.+++||+++|+||||+||++||+++++.
T Consensus 240 ~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~ 319 (422)
T PLN02890 240 VTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSAS 319 (422)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhh
Confidence 99999998877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh
Q 014627 325 LGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP 404 (421)
Q Consensus 325 ~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (421)
+|||.|+||++||+|+|++++++..++++.++.....++++++++.+++.++|++++|++.+++|.++|++.|+.||+++
T Consensus 320 ~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~ 399 (422)
T PLN02890 320 LGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETD 399 (422)
T ss_pred hCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999998888888888877777889999999999999999999999999999999999999987
Q ss_pred ------HHHHHHHHHHHHhccCC
Q 014627 405 ------FRVALEDMVMFNLERFV 421 (421)
Q Consensus 405 ------~r~~L~~l~~~~~~R~~ 421 (421)
.++.|..+++++++|..
T Consensus 400 ~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 400 DEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred cccchHHHHHHHHHHHHHHhccC
Confidence 79999999999999963
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=6.8e-67 Score=521.17 Aligned_cols=315 Identities=35% Similarity=0.583 Sum_probs=288.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014627 100 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 179 (421)
Q Consensus 100 ~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH 179 (421)
.+++..+.++++.|++.+.+.+....|.+.+++.|++..||||+||.|++++++++ |. ..+.++++|+++|+||
T Consensus 3 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRp~L~ll~~~~~----~~--~~~~~~~~A~aiEliH 76 (319)
T TIGR02748 3 ADIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAGGKRIRPVFVLLAGKFG----DY--DLDAIKHVAVALELIH 76 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcCCchHHHHHHHHHHHHc----CC--CHHHHHHHHHHHHHHH
Confidence 35677889999999999999998888889999999999999999999999988754 22 2367889999999999
Q ss_pred HHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014627 180 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 259 (421)
Q Consensus 180 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~ 259 (421)
+||||||||+|+|++|||+||+|.+||++.||++||||++++++.+++.++.++++.+++++..+++||+.|.....+..
T Consensus 77 ~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~ 156 (319)
T TIGR02748 77 MASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFD 156 (319)
T ss_pred HHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999987766777
Q ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 260 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 260 ~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
+++++|++++++|||+||+++|.+|++++|.+++.++.+++||+++|+||||+||++||+++++.+|||.++||++||+|
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~T 236 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVT 236 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhChHHHHHHHhhcC--CcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014627 340 APVIFALEKEPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 417 (421)
Q Consensus 340 lP~l~al~~~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~ 417 (421)
+|++++++..+ .+..+...+. +++++++++++++++|++++++.++++|.++|++.|+.||+++.++.|..++++++
T Consensus 237 lp~l~al~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 315 (319)
T TIGR02748 237 LPVLYAMEDPF-LKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGRAKKPLQEIAKYIG 315 (319)
T ss_pred HHHHHHhcCcc-hhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999998633 4444443332 45688999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014627 418 ERFV 421 (421)
Q Consensus 418 ~R~~ 421 (421)
+|.+
T Consensus 316 ~R~~ 319 (319)
T TIGR02748 316 KRKY 319 (319)
T ss_pred hccC
Confidence 9974
No 5
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=1e-66 Score=520.20 Aligned_cols=317 Identities=33% Similarity=0.579 Sum_probs=291.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014627 98 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 177 (421)
Q Consensus 98 ~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEl 177 (421)
.+.+++..+..+++.|++.|.+.+....|.+.++..|.+..||||+||.|+++++++++ .. .+..+++|+++|+
T Consensus 2 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g----~~--~~~~~~~A~avEl 75 (323)
T PRK10888 2 NLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGGGKRIRPMIAVLAARAVG----YQ--GNAHVTIAALIEF 75 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCCCchHHHHHHHHHHHHcC----CC--hHHHHHHHHHHHH
Confidence 34567788899999999999999988888899999999999999999999999888753 22 3577899999999
Q ss_pred HHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014627 178 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 257 (421)
Q Consensus 178 lH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~ 257 (421)
||+||||||||+|++++|||+||+|.+||+++||++||||++++++++++....+++..+++++..+++||+.|.....+
T Consensus 76 lH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~ 155 (323)
T PRK10888 76 IHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVND 155 (323)
T ss_pred HHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999876666
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCc
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 337 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk 337 (421)
..+++++|++++++|||+||+++|.+|++++|++++..+.+++||+++|+||||+||++||+++++.+|||.|+||++||
T Consensus 156 ~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk 235 (323)
T PRK10888 156 PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGK 235 (323)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhhh-ChHHHHHHHhhcCC---cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 014627 338 LTAPVIFALEK-EPKLREIIESEFCE---TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMV 413 (421)
Q Consensus 338 ~TlP~l~al~~-~~~~~~~l~~~~~~---~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~ 413 (421)
+|||++++++. ++..+..+...+.. +++++++.+++.++|+++++++.+++|.++|++.|+.+|+++.++.|..++
T Consensus 236 ~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~ 315 (323)
T PRK10888 236 PTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLA 315 (323)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999987 55566666544432 346889999999999999999999999999999999999999999999999
Q ss_pred HHHhccC
Q 014627 414 MFNLERF 420 (421)
Q Consensus 414 ~~~~~R~ 420 (421)
+++++|.
T Consensus 316 ~~~~~R~ 322 (323)
T PRK10888 316 HIAVQRD 322 (323)
T ss_pred HHHHhCc
Confidence 9999996
No 6
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=5.8e-67 Score=522.48 Aligned_cols=318 Identities=53% Similarity=0.876 Sum_probs=295.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014627 100 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 179 (421)
Q Consensus 100 ~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH 179 (421)
.+++..+.++++.|++.|.+.+....|.+.++++|++..||||+||.|+++++++++. ......+++.+|+++|++|
T Consensus 5 ~~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~---~~~~~~~~~~~A~aiEllH 81 (323)
T CHL00151 5 SNLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAGGKRIRPAIVLLVAKATGG---NMEIKTSQQRLAEITEIIH 81 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcCCccHHHHHHHHHHHHcCC---CccccHHHHHHHHHHHHHH
Confidence 4567778899999999999999888899999999999999999999999999887642 1122356778999999999
Q ss_pred HHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014627 180 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 259 (421)
Q Consensus 180 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~ 259 (421)
+||||||||||+|++|||+||+|.+||++.||++||||+++++++++...+..+.+.+++++..+++||+.|.....+..
T Consensus 82 ~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 161 (323)
T CHL00151 82 TASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTT 161 (323)
T ss_pred HHHHHHcccccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999887788899999999999999999877666667
Q ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 260 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 260 ~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
.++++|++++++|||+||+++|.+|++++|.+++..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|
T Consensus 162 ~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~T 241 (323)
T CHL00151 162 LSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLT 241 (323)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014627 340 APVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 419 (421)
Q Consensus 340 lP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R 419 (421)
||++++++..+++.+++.....++++++++.+++.++|+++++++.+++|.++|++.|+.||.++.++.|..+++++++|
T Consensus 242 lp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R 321 (323)
T CHL00151 242 APVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIINR 321 (323)
T ss_pred HHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999888888888877777889999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 014627 420 F 420 (421)
Q Consensus 420 ~ 420 (421)
.
T Consensus 322 ~ 322 (323)
T CHL00151 322 L 322 (323)
T ss_pred c
Confidence 6
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=8.6e-66 Score=513.57 Aligned_cols=316 Identities=39% Similarity=0.574 Sum_probs=287.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVG-AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 180 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~-~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~ 180 (421)
+...+..+++.|++.|.+.++ +.++.+.++..|.+..||||+||.++++++++++. ......+++.++|++|||||+
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~--~~~~~~~~~~~~aaavEliH~ 80 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGI--DLETGGNDALDLAAAIELIHT 80 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCC--CcccchhhHHHHHHHHHHHHH
Confidence 456778889999999999998 77889999999999999999999999999988751 111113478999999999999
Q ss_pred HHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc--HHHHHHHHHHHHHHHhHHHHHhhhccCC
Q 014627 181 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN--LEVIKLISQVIKDFASGEIKQASSLFDC 258 (421)
Q Consensus 181 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~--~~v~~~~s~~~~~l~~Ge~~q~~~~~~~ 258 (421)
+|||||||||+|++|||+||+|.+||+..||++||+|++.||+++++..+ +.+.+.+++++..|+.||..|+....+.
T Consensus 81 ~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~ 160 (322)
T COG0142 81 ASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP 160 (322)
T ss_pred HHHHHhhcccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999877 7889999999999999999998776554
Q ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcc
Q 014627 259 DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 338 (421)
Q Consensus 259 ~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~ 338 (421)
+++++|++|+++|||.||+++|++|+++++++++..+.++.||+++|+||||+||++|+++|++++|||+|+|+++||.
T Consensus 161 -~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~ 239 (322)
T COG0142 161 -VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKP 239 (322)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhC-hHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014627 339 TAPVIFALEKE-PKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 417 (421)
Q Consensus 339 TlP~l~al~~~-~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~ 417 (421)
|||++++++.. ++.+ .+........++++++++++++|+++++...++.|.++|++.|+.+|+++.++.|..++++++
T Consensus 240 T~p~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~~~~~L~~la~~i~ 318 (322)
T COG0142 240 TLPVLLALEKANEDQK-LLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSEAKEALLELADFII 318 (322)
T ss_pred hHHHHHHHHcCchhhH-HHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999983 4444 444433333399999999999999999999999999999999999998899999999999999
Q ss_pred ccCC
Q 014627 418 ERFV 421 (421)
Q Consensus 418 ~R~~ 421 (421)
+|..
T Consensus 319 ~R~~ 322 (322)
T COG0142 319 KRKY 322 (322)
T ss_pred hccC
Confidence 9964
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.5e-60 Score=468.32 Aligned_cols=313 Identities=45% Similarity=0.645 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC-C-hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHH
Q 014627 99 LANIFEVVAEDLQTLNQNLKSIVGAE-N-PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIE 176 (421)
Q Consensus 99 ~~~l~~~i~~dl~~v~~~l~~~~~~~-~-p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avE 176 (421)
..+++..+..+++.+++.+...++.. . +.+..+.+|.+..+||++||.++++++++.+. ++...+.++|+++|
T Consensus 64 ~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~-----g~~~~q~~~A~i~E 138 (384)
T KOG0776|consen 64 LFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGKRVRPLLCLAACELVGS-----GDESSQRSLAEIVE 138 (384)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhcccccCchhhhhHHHhccc-----cccHHHHHHHHHHH
Confidence 34566677788999999999988766 3 45667777999999999999999988877652 23467899999999
Q ss_pred HHHHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhh
Q 014627 177 MIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASS 254 (421)
Q Consensus 177 llH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~ 254 (421)
|||++||||||| ||++++|||+||.|+.||++.|||+||||+++|++.++.+.++.+.+++++++.++++|++.|...
T Consensus 139 MIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~ 218 (384)
T KOG0776|consen 139 MIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLV 218 (384)
T ss_pred HHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred c---cCCC-CCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCc
Q 014627 255 L---FDCD-LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 330 (421)
Q Consensus 255 ~---~~~~-~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g 330 (421)
. .+.+ ..++.|..+..+|||+|++.+|++|++++|.++++++.+++||++||++||+.||++||+...+++||+.|
T Consensus 219 ~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag 298 (384)
T KOG0776|consen 219 AGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAG 298 (384)
T ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchh
Confidence 5 3433 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 014627 331 SDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALE 410 (421)
Q Consensus 331 ~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~ 410 (421)
.|+..|+.|+|+++++++.|++++.+.+.+.++.+.++..+.+. ++..|..++++|.++|++.|+.||++++|++|+
T Consensus 299 ~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~ar~aL~ 375 (384)
T KOG0776|consen 299 KDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSEARSALE 375 (384)
T ss_pred hhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999988888 899999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 014627 411 DMVMFNLER 419 (421)
Q Consensus 411 ~l~~~~~~R 419 (421)
.|+.+++.|
T Consensus 376 ~l~~~~~~r 384 (384)
T KOG0776|consen 376 NLVLAVLTR 384 (384)
T ss_pred HHHHHHhcC
Confidence 999999887
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=8.3e-59 Score=458.58 Aligned_cols=277 Identities=29% Similarity=0.393 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014627 104 EVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 180 (421)
Q Consensus 104 ~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~ 180 (421)
..+...++.|++.|.+.+... ++.+.+++.|++..||||+||.|+++++++++ .+ .+...++|+++||||+
T Consensus 5 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~ 78 (299)
T PRK10581 5 QQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFG----VS--TNTLDAPAAAVECIHA 78 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHH
Confidence 345566778888888877542 46789999999999999999999999887653 22 2567889999999999
Q ss_pred HHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc-----H---HHHHHHHHH--HHHHHhHH
Q 014627 181 ASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----L---EVIKLISQV--IKDFASGE 248 (421)
Q Consensus 181 AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-----~---~v~~~~s~~--~~~l~~Ge 248 (421)
|||||||| ||+|++|||+||+|.+||++.|||+||||++.++++++.... . ++++.++++ +..++.||
T Consensus 79 aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ 158 (299)
T PRK10581 79 YSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQ 158 (299)
T ss_pred HHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhh
Confidence 99999999 999999999999999999999999999999999999987532 1 234444443 35689999
Q ss_pred HHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCC
Q 014627 249 IKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDG-SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 327 (421)
Q Consensus 249 ~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~-~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK 327 (421)
+.|+.... ..++.++|++|+++|||+||.++|.+|++++|.++ +.++.+++||+++|+||||+||++|++++++.+||
T Consensus 159 ~ld~~~~~-~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK 237 (299)
T PRK10581 159 ALDLEAEG-KQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGK 237 (299)
T ss_pred HHHHhccC-CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCC
Confidence 99876543 36789999999999999999999999999999864 57899999999999999999999999999999999
Q ss_pred CCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChH-H
Q 014627 328 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF-R 406 (421)
Q Consensus 328 ~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~-r 406 (421)
|.|+|+++||+|||+++++ +++.+.+++|.++|++.|+.+|.++. +
T Consensus 238 ~~g~Dl~~gk~T~p~l~~~---------------------------------e~a~~~a~~~~~~A~~~l~~l~~~~~~~ 284 (299)
T PRK10581 238 RQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDARQSLDQLAAQSLDT 284 (299)
T ss_pred CcchhhhcCCCCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCcCCchhH
Confidence 9999999999999999964 47888999999999999999998766 7
Q ss_pred HHHHHHHHHHhccC
Q 014627 407 VALEDMVMFNLERF 420 (421)
Q Consensus 407 ~~L~~l~~~~~~R~ 420 (421)
+.|..+++|+++|.
T Consensus 285 ~~L~~l~~~~~~R~ 298 (299)
T PRK10581 285 SALEALANYIIQRD 298 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999996
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=2.1e-54 Score=419.64 Aligned_cols=254 Identities=45% Similarity=0.673 Sum_probs=235.5
Q ss_pred ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhh
Q 014627 125 NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 204 (421)
Q Consensus 125 ~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~ 204 (421)
.+.+.++++|++..+||++||.++++++++++ .+. .+.+..+|+++|++|+|+||||||+|+|++|||+||+|.+
T Consensus 3 ~~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g----~~~-~~~~~~la~aiEllh~asLIhDDI~D~s~~RRG~p~~~~~ 77 (259)
T cd00685 3 VELLREALRYLLLAGGKRLRPLLVLLAARALG----GPE-LEAALRLAAAIELLHTASLVHDDVMDNSDLRRGKPTVHKV 77 (259)
T ss_pred chHHHHHHHHHHHcCCccHhHHHHHHHHHHhC----CCc-hHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCcHHHH
Confidence 45688899999999999999999999888764 221 2678899999999999999999999999999999999999
Q ss_pred cCHHHHHHHhHHHHHHHHHHHHccCc---HHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHH
Q 014627 205 YGTRVAVLAGDFMFAQSSWYLANLEN---LEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAAST 281 (421)
Q Consensus 205 ~G~~~AIl~GD~Ll~~a~~~l~~~~~---~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~ 281 (421)
||+..|||+||+|++.++++++.... .++++.+++.+..++.||+.|.....+..+++++|++++.+|||+||+.+|
T Consensus 78 ~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~ 157 (259)
T cd00685 78 FGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAP 157 (259)
T ss_pred hCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999998776 789999999999999999998876555578999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcC
Q 014627 282 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFC 361 (421)
Q Consensus 282 ~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~ 361 (421)
.+|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 158 ~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l--------------- 222 (259)
T cd00685 158 LLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL--------------- 222 (259)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014627 362 ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 419 (421)
Q Consensus 362 ~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R 419 (421)
++.++.|.++|+..|+.+|.+..++.|..+++++++|
T Consensus 223 ---------------------~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ---------------------RELAREYEEKALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 6788999999999999999887889999999999987
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=1.3e-54 Score=421.45 Aligned_cols=251 Identities=39% Similarity=0.632 Sum_probs=224.3
Q ss_pred HHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHH
Q 014627 129 MSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTR 208 (421)
Q Consensus 129 ~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~ 208 (421)
.+++.|++..|||++||.|+++++++++ ...+.+.++|+++||||+||||||||+|+|++|||+||+|.+||++
T Consensus 2 ~~~~~~~~~~~GK~~Rp~l~~~~~~~~~------~~~~~~~~~a~avEliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~ 75 (260)
T PF00348_consen 2 LEPARYYILRGGKRIRPLLVLLAAEALG------GDPEKAIPLAAAVELIHAASLIHDDIIDNSDLRRGKPTVHKKFGNA 75 (260)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHHHHH
T ss_pred hHHHHHHhhCCCccHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcccccccccc
Confidence 4677888899999999999999888764 2347889999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHccC----cHHHHHHHHHHHHHHHhHHHHHhhhccCC--CCCHHHHHHHHhcccHHHHHHHHH
Q 014627 209 VAVLAGDFMFAQSSWYLANLE----NLEVIKLISQVIKDFASGEIKQASSLFDC--DLELEEYLIKSYYKTASLIAASTK 282 (421)
Q Consensus 209 ~AIl~GD~Ll~~a~~~l~~~~----~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~--~~t~~~Y~~~i~~KTa~Lf~~a~~ 282 (421)
.|||+||+|++.+++.++... ...+..++......++.|+.+|..+.... ++++++|++|+++|||+||+++|+
T Consensus 76 ~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~ 155 (260)
T PF00348_consen 76 IAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQ 155 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHH
Confidence 999999999999999999887 34566777777788888988888877655 889999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhC-hHHHHHHHhhcC
Q 014627 283 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE-PKLREIIESEFC 361 (421)
Q Consensus 283 ~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~-~~~~~~l~~~~~ 361 (421)
+|++++|.+++.++.+++||+++|+||||+||++|++++++.+||+.|+||++||+|||+++++++. +++++++....
T Consensus 156 ~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~- 234 (260)
T PF00348_consen 156 LGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAY- 234 (260)
T ss_dssp HHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 45666666554
Q ss_pred CcccHHHHHHHHHhhCcHHHHHHHH
Q 014627 362 ETGSLDEAIKLVKTSGGIEEAQELA 386 (421)
Q Consensus 362 ~~~~~~~i~~li~~~g~i~~a~~~a 386 (421)
...+.+++.+.++.++.++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 235 GKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhc
Confidence 3446778888888888898888765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1e-40 Score=317.89 Aligned_cols=233 Identities=39% Similarity=0.579 Sum_probs=207.9
Q ss_pred chHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhh-cCHHHHHHHhHHHHHHH
Q 014627 143 LRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL-YGTRVAVLAGDFMFAQS 221 (421)
Q Consensus 143 lRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~-~G~~~AIl~GD~Ll~~a 221 (421)
+||.++++++++++ .. .+.+..+|+++|+||++++|||||+|++..|||+|++|.+ ||...|+++||+++..+
T Consensus 1 ~r~~~~~~~~~~~~----~~--~~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a 74 (236)
T cd00867 1 SRPLLVLLLARALG----GD--LEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAILAGDYLLARA 74 (236)
T ss_pred CcHHHHHHHHHHcC----CC--HHHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHHHHHHHHHHHHH
Confidence 58999998887654 22 4678899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 014627 222 SWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEY 301 (421)
Q Consensus 222 ~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~ 301 (421)
+..+.+....++.+++.+.+..+++||..|+....+...++++|++++++|||++|+.+|..++++++.+++..+.+.+|
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (236)
T cd00867 75 FQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDY 154 (236)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 99999877778899999999999999999887655457899999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHH
Q 014627 302 GRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEE 381 (421)
Q Consensus 302 G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~ 381 (421)
|.++|+||||.||++|+++|.+.+|| .++||++||+|||++++
T Consensus 155 ~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------------------ 197 (236)
T cd00867 155 GRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------------------ 197 (236)
T ss_pred HHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH------------------------------------
Confidence 99999999999999999999999999 99999999999999996
Q ss_pred HHHHHHHHHHHHHHHhccCCCCh--HHHHHHHHHHHHhcc
Q 014627 382 AQELAKEKANLAIHNLHCLPRSP--FRVALEDMVMFNLER 419 (421)
Q Consensus 382 a~~~a~~~~~~A~~~L~~lp~~~--~r~~L~~l~~~~~~R 419 (421)
.+.+.++.+++.+.+..+++.. .+..+..++.++.+|
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 -RERAAEYAEEAYAALEALPPSLPRARRALIALADFLYRR 236 (236)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC
Confidence 4555666777777777665543 577788888888765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=277.85 Aligned_cols=272 Identities=22% Similarity=0.358 Sum_probs=230.3
Q ss_pred hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhc
Q 014627 126 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 205 (421)
Q Consensus 126 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~ 205 (421)
..+.++..|++..+||.+|--|.+. ++.+...+. ++...+..++||+|++||..|||.|+|.+|||.|++|..|
T Consensus 21 ~ill~Py~yilq~PGKqfR~~L~~a----fNhwl~~P~--dkLaii~~ivemLHNsSLLIDDIEDNs~LRRG~pvaHsIy 94 (322)
T KOG0777|consen 21 SILLKPYNYILQKPGKQFRLNLIVA----FNHWLNLPK--DKLAIISQIVEMLHNSSLLIDDIEDNSPLRRGQPVAHSIY 94 (322)
T ss_pred HHHhchHHHHHhCchHHHHHHHHHH----HHHHHhCCH--HHHHHHHHHHHHHhccceeeccccccchhhcCCcchhhhc
Confidence 4577899999999999999999884 444544432 4566788999999999999999999999999999999999
Q ss_pred CHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccC----CCCCHHHHHHHHhcccHHHHHHHH
Q 014627 206 GTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD----CDLELEEYLIKSYYKTASLIAAST 281 (421)
Q Consensus 206 G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~----~~~t~~~Y~~~i~~KTa~Lf~~a~ 281 (421)
|++-.|++++|++.+|++.+.++..+..++++.+.+..+..|| ..++++ ..+++++|..|+..|||-||.++.
T Consensus 95 GvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQ---GldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~La~ 171 (322)
T KOG0777|consen 95 GVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQ---GLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRLAL 171 (322)
T ss_pred cCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC---CcceeeeccCcCCCHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999988899999999999999994 444443 247999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhCh---HHHHHHHh
Q 014627 282 KGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEP---KLREIIES 358 (421)
Q Consensus 282 ~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~---~~~~~l~~ 358 (421)
++.-.++...+ .+..+-.-+|+.|||+||++++...+..-.|..+.||.|||.++|+++|+...+ ....++..
T Consensus 172 rLMqlfS~~ke----dl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrq 247 (322)
T KOG0777|consen 172 RLMQLFSHHKE----DLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRILRQ 247 (322)
T ss_pred HHHHHHHhcch----hHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHHHH
Confidence 99999886544 466778899999999999999976555567999999999999999999997633 33445544
Q ss_pred hcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Q 014627 359 EFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALE 410 (421)
Q Consensus 359 ~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~ 410 (421)
+-.+-+-....++++++.|.++|++....+...+|...++....+++...|.
T Consensus 248 RT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Npyl~~L~ 299 (322)
T KOG0777|consen 248 RTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENPYLPDLA 299 (322)
T ss_pred hhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 4444444557899999999999999999999999999999888887765554
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-35 Score=281.18 Aligned_cols=289 Identities=20% Similarity=0.139 Sum_probs=235.1
Q ss_pred HHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccH----HHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhh
Q 014627 127 VLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTT----KHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVH 202 (421)
Q Consensus 127 ~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~----~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h 202 (421)
.+.....|. ..|||..|+..++.+.+++.+- ....+ .+..+++.||++++..||.|||||+|.+|||+||||
T Consensus 39 ~~~~~L~yN-~~GGK~nRgl~vv~s~~~L~~~---~~l~~~~~~~a~~lGw~vElLQaffLiaDDIMDnS~tRRGqpCWy 114 (347)
T KOG0711|consen 39 WLKEVLDYN-VIGGKLNRGLSVVDSFKALVEP---RKLDEEELQLALILGWCVELLQAFFLVADDIMDNSKTRRGQPCWY 114 (347)
T ss_pred HHHHHHhcc-CcccccccchhHHHHHHHhcCc---cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCccee
Confidence 455555555 5899999999999998876531 22222 345678899999999999999999999999999999
Q ss_pred hhcCH-HHHHHHhHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhHHHHHhhhcc--CCCCCHHHHHHHHhcccH
Q 014627 203 QLYGT-RVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSLF--DCDLELEEYLIKSYYKTA 274 (421)
Q Consensus 203 ~~~G~-~~AIl~GD~Ll~~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Ge~~q~~~~~--~~~~t~~~Y~~~i~~KTa 274 (421)
.+-|+ -.|||-+-+|-+.-..+|... ...++++++.+....++.|++....+.. -..+|++.|..|+.+|||
T Consensus 115 ~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa 194 (347)
T KOG0711|consen 115 QKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTA 194 (347)
T ss_pred ecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHHHHHHHhhcccc
Confidence 99999 458887766655555555532 1357889999999999999554322211 125789999999999999
Q ss_pred HH-HHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-ChH
Q 014627 275 SL-IAASTKGAAIFSGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPK 351 (421)
Q Consensus 275 ~L-f~~a~~~gailag~-~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~~ 351 (421)
.+ |.+|..+|.+++|. +.+.-.....+...+|..||++||++|++||++.+|| .|+||.++|+||.+.+|+++ +++
T Consensus 195 ~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv~~al~~~~~e 273 (347)
T KOG0711|consen 195 YYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLVVKALQRASAE 273 (347)
T ss_pred ceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeeehHHHHhhcCHH
Confidence 99 89999999999985 4556667888999999999999999999999999999 89999999999999999999 899
Q ss_pred HHHHHHhhcCCc--ccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHHHhccC
Q 014627 352 LREIIESEFCET--GSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRS--PFRVALEDMVMFNLERF 420 (421)
Q Consensus 352 ~~~~l~~~~~~~--~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~--~~r~~L~~l~~~~~~R~ 420 (421)
+.+++..+++.+ +.++.+..+.++.+......+.-..........|..++.+ +....+..++..+.+|.
T Consensus 274 q~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~~~~~v~t~fl~kiykr~ 346 (347)
T KOG0711|consen 274 QYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTGVKVKVGTSFLNKIYKRS 346 (347)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCcchhhhHHHHHHHHHhhc
Confidence 999999999864 5688999999999999999888888888888888877654 44556666777776664
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.91 E-value=5.2e-22 Score=184.88 Aligned_cols=223 Identities=35% Similarity=0.471 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhh---cCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Q 014627 169 RRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL---YGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFA 245 (421)
Q Consensus 169 ~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~---~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~ 245 (421)
..++.++|.+|+++++||||+|++..|+|.|++|.. +|...+++.|+.++..++..+...........+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998 99999999999999999998887766778889999999999
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 014627 246 SGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 325 (421)
Q Consensus 246 ~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~ 325 (421)
.|+..+.....+..++.++|..+++.|||.++...+..++...+.+......+..++.++|++||+.||+.|+..+.+..
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99998876654456899999999999999999999999888877776778889999999999999999999998775432
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh-
Q 014627 326 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP- 404 (421)
Q Consensus 326 GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~- 404 (421)
+|+.|+|.+++.+......+. ..++..+.++.+.+.+..+.+++++.+..+....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 578999999988753221111 1677888899999999999999999988765542
Q ss_pred -HHHHHHHHHHH
Q 014627 405 -FRVALEDMVMF 415 (421)
Q Consensus 405 -~r~~L~~l~~~ 415 (421)
....+...+..
T Consensus 229 ~~~~~~~~~~~~ 240 (243)
T cd00385 229 DVPRALLALALN 240 (243)
T ss_pred HHHHHHHHHHHH
Confidence 34444444443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.51 E-value=0.0018 Score=61.15 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Q 014627 165 TTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDF 244 (421)
Q Consensus 165 ~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l 244 (421)
+++....+.++-++|+|..+||.|-. +..+.+...-.+ ...||+|||.-++.+.+|++.++..+++.+++++..+
T Consensus 32 ~~~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~R----QLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~ei 106 (212)
T PF07307_consen 32 EEEAERYALATMLVQIALDTHDEVDN-AGDESEESSKER----QLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEI 106 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhh----hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677889999999999999999966 333222222211 5799999999999999999999999999999999999
Q ss_pred HhHHHHHhhhccCCCCCHHHHHHHHh-cccHHHH
Q 014627 245 ASGEIKQASSLFDCDLELEEYLIKSY-YKTASLI 277 (421)
Q Consensus 245 ~~Ge~~q~~~~~~~~~t~~~Y~~~i~-~KTa~Lf 277 (421)
.+..+.=. .....+.++|+..+. -+|+.+.
T Consensus 107 NE~K~~ly---~~~~~~~e~~~~~~~~ies~l~~ 137 (212)
T PF07307_consen 107 NELKMSLY---QKKKETAEEYLESVVTIESALFQ 137 (212)
T ss_pred HHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHH
Confidence 98865311 122347788876543 3444433
No 17
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.95 E-value=0.03 Score=56.80 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 014627 232 EVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQI 311 (421)
Q Consensus 232 ~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI 311 (421)
...+++.+.+..|..|....+........|.++|..-+++=-|..-.+.+.+-+. +|...+......+++..+|+|+|+
T Consensus 101 ~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQl 179 (336)
T TIGR01559 101 KYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQK 179 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHH
Confidence 4567777888888899754432211111688999888887766665555554332 333222222346799999999999
Q ss_pred HHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 014627 312 VDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKAN 391 (421)
Q Consensus 312 ~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 391 (421)
.|=+.|+. .|+.+|++=||.=..-+......+ +..++..++... .+..-...|..+++
T Consensus 180 TNIlRDv~-----------ED~~~GR~YlP~e~l~~~g~~~~d-----l~~~~~~~~~~~------~l~~lv~~A~~~~~ 237 (336)
T TIGR01559 180 TNIIRDYL-----------EDINEGRMFWPREIWSKYAKKLGD-----FKKPENSDKALQ------CLNELVTNALHHAT 237 (336)
T ss_pred HHHHHHHH-----------hHHhCCCCCCCHHHHHHcCCCHHH-----hcCccccHHHHH------HHHHHHHHHHHHHH
Confidence 99999974 566778888885432221111111 112233333333 34455677888999
Q ss_pred HHHHHhccCCCCh
Q 014627 392 LAIHNLHCLPRSP 404 (421)
Q Consensus 392 ~A~~~L~~lp~~~ 404 (421)
.|+..+..+++..
T Consensus 238 ~al~yl~~l~~~~ 250 (336)
T TIGR01559 238 DCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999987654
No 18
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.45 E-value=0.17 Score=49.02 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 014627 236 LISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDI 315 (421)
Q Consensus 236 ~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDl 315 (421)
+-.+.+..+.+|...++.. ..-.|++++..-+++-+|++..+.+.+.. ..+++ .....++.++|.|+|+.|=+
T Consensus 88 l~~~~l~~li~~~~~dl~~--~~~~t~~~L~~Y~~~vag~vg~l~~~~~~---~~~~~--~~~~~~a~~lG~alql~nil 160 (267)
T PF00494_consen 88 LPREPLLELIDGMEMDLEF--TPYETFADLERYCYYVAGSVGLLLLQLLG---AHDPD--EAARDAARALGRALQLTNIL 160 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---S--SSHHHHHHHHHHHTHHHHHHHHHHHH---SSTSH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhc---cccch--hhHHHHHHHHHHHHHHHHHH
Confidence 3445566677775554432 23458899988888888888877655543 21222 46778899999999999999
Q ss_pred hhcccchhhhCCCCccc-ccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 014627 316 LDFTQSAEQLGKPAASD-LAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAI 394 (421)
Q Consensus 316 lD~~~d~~~~GK~~g~D-L~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~ 394 (421)
.|+- .| +..|++-+|.=..-+..-...+++.....+ +.+.. .+......++.++++|.
T Consensus 161 Rd~~-----------~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~----~~~~~------~~~~~~~~A~~~l~~a~ 219 (267)
T PF00494_consen 161 RDIP-----------EDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRS----ERLRA------LIRELAARARAHLDEAR 219 (267)
T ss_dssp HTHH-----------HH-HHTT---S-HHHHHHTTSSHHHHHHHG-GG----HHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHhH-----------HHHHhcccccCCchhHHHcCCCHHHHHhcccCC----HHHHH------HHHHHHHHHHHHHHHHH
Confidence 8873 57 678888888766433221122222221011 11222 23456778899999999
Q ss_pred HHhccCCCChHHH
Q 014627 395 HNLHCLPRSPFRV 407 (421)
Q Consensus 395 ~~L~~lp~~~~r~ 407 (421)
..+..+|+...+.
T Consensus 220 ~~~~~l~~~~~~~ 232 (267)
T PF00494_consen 220 AGLSALPPPRARP 232 (267)
T ss_dssp HGGGGS--TTHHH
T ss_pred HHHHHcCCHhhhH
Confidence 9999995554444
No 19
>PLN02632 phytoene synthase
Probab=95.45 E-value=0.42 Score=48.42 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=83.3
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 014627 240 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD--GSLSKQMYEYGRNLGLSFQIVDDILD 317 (421)
Q Consensus 240 ~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~--~~~~~~l~~~G~~lG~afQI~DDllD 317 (421)
.+..+.+|...++.. ..-.|++++..-+++--|.+..+.+.+ ++..+ +...+.+...+.++|+|+|+.|=+.|
T Consensus 141 ~~~~li~g~~~Dl~~--~~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRD 215 (334)
T PLN02632 141 PFRDMIEGMRMDLVK--SRYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRD 215 (334)
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566775544432 234578888888887777777666554 22222 22234567889999999999999988
Q ss_pred cccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHh
Q 014627 318 FTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNL 397 (421)
Q Consensus 318 ~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 397 (421)
+ +.|+..|++-+|.=..-+..-...+++... .-+.+..+ +.+-...++.++++|...+
T Consensus 216 v-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-----~~~~~~~l------~~~~~~~Ar~~~~~a~~~l 273 (334)
T PLN02632 216 V-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-----VTDKWRAF------MKFQIKRARMYFAEAEEGV 273 (334)
T ss_pred H-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-----CCHHHHHH------HHHHHHHHHHHHHHHHHhH
Confidence 7 367788888888644322211111222211 11122222 2333467888999999989
Q ss_pred ccCCCC
Q 014627 398 HCLPRS 403 (421)
Q Consensus 398 ~~lp~~ 403 (421)
..+|..
T Consensus 274 ~~lp~~ 279 (334)
T PLN02632 274 SELDPA 279 (334)
T ss_pred hhCCHH
Confidence 888864
No 20
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.31 E-value=0.73 Score=44.98 Aligned_cols=133 Identities=8% Similarity=-0.026 Sum_probs=79.5
Q ss_pred HHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014627 240 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFT 319 (421)
Q Consensus 240 ~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~ 319 (421)
.+..+.+|...++. .....|.+++..-+++-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~--~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVV--VTRYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 33445556544332 1233578888877877777777665543 3322322 346889999999999988886
Q ss_pred cchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhcc
Q 014627 320 QSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHC 399 (421)
Q Consensus 320 ~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 399 (421)
+.|+..|++.+|.=..-+..-...+++... .-..+.. .+..-...++.++.+|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~-----~~~~~~~------~~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAGR-----ATPALRE------LMAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcCC-----CCHHHHH------HHHHHHHHHHHHHHHHHHhHHh
Confidence 356677888888644332211111222211 1112222 1344556788899999999998
Q ss_pred CCCC
Q 014627 400 LPRS 403 (421)
Q Consensus 400 lp~~ 403 (421)
+|..
T Consensus 216 lp~~ 219 (266)
T TIGR03464 216 VDGR 219 (266)
T ss_pred CCHh
Confidence 8854
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=93.59 E-value=1 Score=43.85 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=82.4
Q ss_pred HHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014627 239 QVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDF 318 (421)
Q Consensus 239 ~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~ 318 (421)
+.+..+.+|...++.. ....|.+++..-++.-.|++..+.+.+ ++ ..+ +.....+.++|.|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~--~~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg-~~~---~~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQ--TRYPDFAELDLYCDRVAGAVGRLSARI---FG-ATD---ARTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCC--CCCCCHHHHHHHHHHhHHHHHHHHHHH---hC-CCC---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566775544432 234588888888887777777666554 33 222 23567899999999999988887
Q ss_pred ccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhc
Q 014627 319 TQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH 398 (421)
Q Consensus 319 ~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 398 (421)
- .|+..|++.+|.=..-+.+-...+++... .-+.+.. .+.+-...++.++++|...+.
T Consensus 156 ~-----------eD~~~gR~ylP~~~l~~~gv~~~~l~~~~-----~~~~~~~------~~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 G-----------EDARRGRIYLPAEELQRFGVPAADILEGR-----YSPALAA------LCRFQAERARAHYAEADALLP 213 (266)
T ss_pred H-----------HHHhCCCeecCHHHHHHcCCCHHHhcCCC-----CCHHHHH------HHHHHHHHHHHHHHHHHHhhh
Confidence 3 56778889998755433221111222111 1112222 133445667888888888888
Q ss_pred cCCCC
Q 014627 399 CLPRS 403 (421)
Q Consensus 399 ~lp~~ 403 (421)
.+|..
T Consensus 214 ~~p~~ 218 (266)
T TIGR03465 214 ACDRR 218 (266)
T ss_pred hCCHh
Confidence 88853
No 22
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=92.97 E-value=1.5 Score=42.50 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=82.5
Q ss_pred HHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014627 239 QVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDF 318 (421)
Q Consensus 239 ~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~ 318 (421)
+.+..+.+|...++. .....+++++...+++-.|+...+.+.+ ++.... +...+++.++|.|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~--~~~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLD--KRRYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCC--CCCCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666554433 1234578888877877767666555443 222122 34668899999999999999897
Q ss_pred ccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhc
Q 014627 319 TQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH 398 (421)
Q Consensus 319 ~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 398 (421)
- .|+..|++.+|.=..-+..-...+++.. ..-+.+..+ +.+-...++.++..|...+.
T Consensus 165 ~-----------eD~~~gR~YlP~d~l~~~gv~~~~l~~~-----~~~~~~~~~------~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 G-----------EDARRGRIYLPREELARFGVTLEDLLAP-----ENSPAFRAL------LRRLIARARAHYREALAGLA 222 (265)
T ss_pred H-----------HHHccCCCcCCHHHHHHcCCCHHHHcCC-----CCCHHHHHH------HHHHHHHHHHHHHHHHHhHH
Confidence 3 5677888888875543322112222211 111222222 34556778999999999999
Q ss_pred cCCC
Q 014627 399 CLPR 402 (421)
Q Consensus 399 ~lp~ 402 (421)
.+|.
T Consensus 223 ~lp~ 226 (265)
T cd00683 223 ALPR 226 (265)
T ss_pred hCCH
Confidence 9985
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=92.25 E-value=12 Score=36.68 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC--CChhHHH--HHHHHHHHH
Q 014627 231 LEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSK--QMYEYGRNL 305 (421)
Q Consensus 231 ~~v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag--~~~~~~~--~l~~~G~~l 305 (421)
+.....+.+.+.....|.+.+..... ...+++++|+.+-..-.|..+.... +-...| .++.... .+..+-...
T Consensus 128 ~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~~ 205 (303)
T cd00687 128 AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEALA 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHHH
Confidence 44455566666667777766654332 3457999998654444454443221 111223 3343333 367788888
Q ss_pred HHHHHHHHhhhhcccc
Q 014627 306 GLSFQIVDDILDFTQS 321 (421)
Q Consensus 306 G~afQI~DDllD~~~d 321 (421)
+...-+.||+..|..+
T Consensus 206 ~~~~~l~NDl~S~~KE 221 (303)
T cd00687 206 SDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 9999999999999543
No 24
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=80.62 E-value=55 Score=31.34 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-cCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC--CCh---hHHHHHHHHHHHH
Q 014627 232 EVIKLISQVIKDFASGEIKQASSL-FDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDG---SLSKQMYEYGRNL 305 (421)
Q Consensus 232 ~v~~~~s~~~~~l~~Ge~~q~~~~-~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag--~~~---~~~~~l~~~G~~l 305 (421)
.....+.+.+..+..|...+.... ....++.++|+.+-..-.|..+.+++.. ...| .++ .....+..+....
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~--~~~g~~l~~~~~~~~~~~~~l~~~~ 199 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSF--LGMGDILPEEAFEWLPSYPKLVRAS 199 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHH--HHcCCCCCHHHHHHhhhhHHHHHHH
Confidence 444556666666667766665443 2346899999876555444444332221 1122 333 3345677788888
Q ss_pred HHHHHHHHhhhhccc
Q 014627 306 GLSFQIVDDILDFTQ 320 (421)
Q Consensus 306 G~afQI~DDllD~~~ 320 (421)
+..--+.||+..|..
T Consensus 200 ~~~~~l~NDl~S~~k 214 (284)
T cd00868 200 STIGRLLNDIASYEK 214 (284)
T ss_pred HHHHHHhccchHHHH
Confidence 888899999999843
No 25
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=75.99 E-value=49 Score=32.94 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=75.8
Q ss_pred HHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhh
Q 014627 237 ISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDIL 316 (421)
Q Consensus 237 ~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDll 316 (421)
..+.+..|..|...++... .-.+++++..-+++=.|....+ ++.+++-.+ ..........+|.|+|+.|=+.
T Consensus 101 ~~~~~~~~~da~~~Dl~~~--~y~~~~eL~~Yc~~vAg~vG~l---~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilR 172 (288)
T COG1562 101 PREAFPALIDAMRMDLDRT--RYLDFEELEEYCYGVAGAVGLL---LARILGPDK---DAATRAYARGLGLALQLVNILR 172 (288)
T ss_pred CHHHHHHHHHHHHHHhhhc--cccCHHHHHHHHHHhHHHHHHH---HHHHhCccc---chhhHHHHHHHHHHHHHHHHHH
Confidence 3455566777765554332 1223455544444433333322 333443222 2345556666999999999999
Q ss_pred hcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Q 014627 317 DFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHN 396 (421)
Q Consensus 317 D~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 396 (421)
|+ +.|...|+.=+|.=-..+-.....++++.. .-+.... .+++-...++++...|...
T Consensus 173 dv-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~-----~~~~~~~------~~~~~~~~ar~~~~~a~~~ 230 (288)
T COG1562 173 DV-----------GEDRRRGRVYLPAEELARFGVSEADLLAGR-----VDDAFRE------LMRFEADRARDHLAEARRG 230 (288)
T ss_pred Hh-----------HHHHhCCcccCCHHHHHHhCCCHHHHHccc-----chhHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 86 467778888888533222222222222111 1112222 2455667788888999999
Q ss_pred hccCCCCh
Q 014627 397 LHCLPRSP 404 (421)
Q Consensus 397 L~~lp~~~ 404 (421)
|..+|...
T Consensus 231 ~~~lp~~~ 238 (288)
T COG1562 231 LPALPGRA 238 (288)
T ss_pred hhhCCccc
Confidence 99888754
No 26
>PRK10581 geranyltranstransferase; Provisional
Probab=71.09 E-value=25 Score=35.02 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCcCCC------------CCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 168 HRRLAEIIEMIHTASLIHDDVLDE------------SDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 168 ~~~lA~avEllH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
...+...-+.+=.|+-|.|||.|- .+.+.|++|+=..+|...|....+-++..|.+.|..++
T Consensus 205 ~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 205 LPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445667788899999999999883 34567777776666666555555555566666665553
No 27
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=67.08 E-value=80 Score=29.94 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCC-C---hhHHHHHHHHHHHHHHH
Q 014627 234 IKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGV-D---GSLSKQMYEYGRNLGLS 308 (421)
Q Consensus 234 ~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~-~---~~~~~~l~~~G~~lG~a 308 (421)
.+.+.+.+.....|...+..... ...+++++|+.+-..-+|..+..++..-.+ ... + ++....-..+-...+..
T Consensus 139 ~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (270)
T PF03936_consen 139 IKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAADI 217 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHHH
Confidence 34466666666677666555443 346789999976665555554443321111 211 1 11122211255566666
Q ss_pred HHHHHhhhhcc
Q 014627 309 FQIVDDILDFT 319 (421)
Q Consensus 309 fQI~DDllD~~ 319 (421)
--+.||+..|.
T Consensus 218 ~~l~NDl~S~~ 228 (270)
T PF03936_consen 218 IRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhcccchhh
Confidence 67779999984
No 28
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=53.13 E-value=18 Score=29.27 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014627 291 DGSLSKQMYEYGRNLGLSFQIVDDILDFT 319 (421)
Q Consensus 291 ~~~~~~~l~~~G~~lG~afQI~DDllD~~ 319 (421)
.+...+.+-+||..+|-.||++==+.-++
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 45677889999999999999985444443
No 29
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=46.87 E-value=2.9e+02 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCC----C-CCCchhhhhcCHHHHHHHhHHHHHHHHHHHH
Q 014627 171 LAEIIEMIHTASLIHDDVLDESDM----R-RGQETVHQLYGTRVAVLAGDFMFAQSSWYLA 226 (421)
Q Consensus 171 lA~avEllH~AsLIHDDIiD~s~~----R-RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 226 (421)
+..++=++|.+..+..|+.|.+.. | +.+|-..-+...+.|...+-.+...++-...
T Consensus 45 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 45 FTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999775433 2 3677777777888888887777666654433
No 30
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=46.30 E-value=2.4e+02 Score=28.26 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=33.4
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 286 IFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 286 ilag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
.+.|.+++....+...-+.|=.|.=|.||+.|= +++|.|++|....|.
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~G 103 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKWG 103 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHhC
Confidence 344555554445666667777888999999873 567888888866654
No 31
>CHL00151 preA prenyl transferase; Reviewed
Probab=44.67 E-value=1.5e+02 Score=29.76 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD 190 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD 190 (421)
+....+...-+-+=.|+-|.|||.|
T Consensus 195 ~~~~~l~~~G~~lG~aFQi~DDilD 219 (323)
T CHL00151 195 KDHNDFYLYGKHLGLAFQIIDDVLD 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566677788889999999987
No 32
>PLN02857 octaprenyl-diphosphate synthase
Probab=42.36 E-value=1.8e+02 Score=30.55 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCcCCC
Q 014627 168 HRRLAEIIEMIHTASLIHDDVLDE 191 (421)
Q Consensus 168 ~~~lA~avEllH~AsLIHDDIiD~ 191 (421)
...+...-+.+=.|+-|.|||+|-
T Consensus 290 ~~~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 290 KEQMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344666678888999999999883
No 33
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=41.07 E-value=3.4e+02 Score=26.24 Aligned_cols=157 Identities=13% Similarity=0.001 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCC---CCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Q 014627 169 RRLAEIIEMIHTASLIHDDVLDESDM---RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFA 245 (421)
Q Consensus 169 ~~lA~avEllH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~ 245 (421)
.-...++=++|.+..+..|+.|-+.. |..+|-...+...+.+...+-.+...+.-+..-.+ ....-+ . .+ ...
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~-~-~~-~~~ 115 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLIS-PLAFLV-V-IL-VSV 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-HHHHHH-H-HH-HHH
Confidence 33445677899999999999776544 45566555555666777666555544443322222 111110 0 00 011
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 014627 246 SGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 325 (421)
Q Consensus 246 ~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~ 325 (421)
.+-..-.. .....-..+.. .|..+..+...|....+......-.+.-+.--..+.+++..|+.|..
T Consensus 116 ~~~~Ys~~--lK~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e------ 181 (279)
T PRK12884 116 LGILYNWK--LKEYGLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE------ 181 (279)
T ss_pred HHHHHHHh--hccccchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh------
Confidence 11111000 01000011111 12223333344444333332222223333444556678888888875
Q ss_pred CCCCcccccCCcccHHHHHHhhh
Q 014627 326 GKPAASDLAKGNLTAPVIFALEK 348 (421)
Q Consensus 326 GK~~g~DL~egk~TlP~l~al~~ 348 (421)
.|-+.|+.|+|+.+.-++
T Consensus 182 -----~D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 182 -----GDRLRGARTLAILYGEKI 199 (279)
T ss_pred -----hHHHcCCeeechHhcHHH
Confidence 455788899999986654
No 34
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=39.06 E-value=3.7e+02 Score=26.03 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhC
Q 014627 304 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE 349 (421)
Q Consensus 304 ~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~ 349 (421)
-+-.+.++..|+.|..+| -+.|+.|+|+.+..++.
T Consensus 172 l~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGD-----------RKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchhH-----------HHcCCcccchhcchHHH
Confidence 345678899999998654 46788999999987653
No 35
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=37.85 E-value=3.9e+02 Score=25.97 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCCC---CCCchhhhhcCHHHHHHHhHHHHHHHHHH
Q 014627 171 LAEIIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSSWY 224 (421)
Q Consensus 171 lA~avEllH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~ 224 (421)
...++=++|.+..+..|+.|-+..| +.+|-...+...+.|...+-.++..+.-.
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 98 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLIL 98 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3445668899999999998866544 56777777788888888887777666543
No 36
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=37.82 E-value=4.3e+02 Score=26.39 Aligned_cols=50 Identities=8% Similarity=-0.102 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhcCcCCCCCCC---CCCchhhhhcCHHHHHHHhHHHHHHHHH
Q 014627 174 IIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSSW 223 (421)
Q Consensus 174 avEllH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 223 (421)
+.=++|.++.++.|+.|.+..| +.+|...-+...+.+...+-.++..++-
T Consensus 73 ~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 73 AGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 3557899999999999876655 4466666667777787777666655543
No 37
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=36.56 E-value=3.6e+02 Score=25.15 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhhcCcCCCCCCCC--CC---chhhhhcCHHHHHHHhHHHHHHHHHHHHccCcH-HHHHHHHHHHHHHHhH
Q 014627 174 IIEMIHTASLIHDDVLDESDMRR--GQ---ETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL-EVIKLISQVIKDFASG 247 (421)
Q Consensus 174 avEllH~AsLIHDDIiD~s~~RR--G~---pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~-~v~~~~s~~~~~l~~G 247 (421)
++=++|.+.-+.||+.|-...|. ++ |-...+...+.+...+-.++..+.-+....+.. -.+-.+.-.+. +..-
T Consensus 31 ~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~-~~Ys 109 (257)
T PF01040_consen 31 AVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG-LLYS 109 (257)
T ss_pred HHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHh
Confidence 33389999999999988777766 43 344556666666666655555444322222211 11111111111 1000
Q ss_pred HHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhC
Q 014627 248 EIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVD-GSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLG 326 (421)
Q Consensus 248 e~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~-~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~G 326 (421)
... ..+...-..+.. .|..+......|....+.+ +...-.+.-+.--++......+|+.|+.+|
T Consensus 110 --~~~--~lk~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D----- 174 (257)
T PF01040_consen 110 --PPL--RLKRRPLWGELV------VALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGD----- 174 (257)
T ss_pred --hhh--hhcceeccchhh------HHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----
Confidence 000 000000001110 0111223333444334333 223333444446777888888899998654
Q ss_pred CCCcccccCCcccHHHHHHhh
Q 014627 327 KPAASDLAKGNLTAPVIFALE 347 (421)
Q Consensus 327 K~~g~DL~egk~TlP~l~al~ 347 (421)
.+.|+.|+|+.+..+
T Consensus 175 ------~~~g~~Tl~v~~G~~ 189 (257)
T PF01040_consen 175 ------RKAGRRTLPVLLGEK 189 (257)
T ss_pred ------HHcCCcchHHHHHHH
Confidence 467889999988544
No 38
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=31.22 E-value=4.8e+02 Score=25.01 Aligned_cols=53 Identities=28% Similarity=0.166 Sum_probs=39.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhh
Q 014627 283 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 347 (421)
Q Consensus 283 ~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~ 347 (421)
+.+.+.|.+++....+...-+.|=.++=|.||+.|= +++|.|++|.-..+.-.
T Consensus 23 ~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~G~~ 75 (260)
T PF00348_consen 23 LAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKFGNA 75 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCcccccccccc
Confidence 334445566766777888888889999999999773 56789999887776543
No 39
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=29.22 E-value=5.8e+02 Score=25.57 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 295 SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 295 ~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
...+...-+.|=.|.-|.||++|- +++|.|++|+-..|.
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~G 107 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLFG 107 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHhC
Confidence 334555667777788999999873 577889998877664
No 40
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=29.02 E-value=5.2e+02 Score=24.72 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCCh-hHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHh
Q 014627 289 GVDG-SLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 289 g~~~-~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al 346 (421)
|.++ +....+...-+-+=.++-|.||+.|= ++++.|++|+-..+..
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~G~ 80 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVFGN 80 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHhCc
Confidence 4444 55556677777888899999999772 4567888888766643
No 41
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=27.77 E-value=5.7e+02 Score=24.75 Aligned_cols=56 Identities=14% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCC---CCCCchhhhhcCHHHHHHHhHHHHHHHHHHHH
Q 014627 171 LAEIIEMIHTASLIHDDVLDESDM---RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLA 226 (421)
Q Consensus 171 lA~avEllH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~ 226 (421)
+..+.=++|.++.+..|+.|-+.. |+.+|-..-....+.|...+-.+...++-...
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999765443 57778777777888888888777766654433
No 42
>PRK13591 ubiA prenyltransferase; Provisional
Probab=27.74 E-value=6.4e+02 Score=25.38 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCCCch
Q 014627 169 RRLAEIIEMIHTASLIHDDVLDESDMRRGQET 200 (421)
Q Consensus 169 ~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt 200 (421)
.+...+.-++-.+..+.||..|-...|-++|.
T Consensus 61 ~~~~~~~~L~~~s~~~iNd~~D~eiD~IN~P~ 92 (307)
T PRK13591 61 ILTCIAGGLIIYSVYTLDRALDSEEDAVNRSE 92 (307)
T ss_pred hHHHHHHHHHHHHHHHHhhhccchhhhccCcc
Confidence 34445555667788899999888777777773
No 43
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=26.00 E-value=1.5e+02 Score=29.41 Aligned_cols=64 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH-HHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh
Q 014627 274 ASLIAASTKGAAIFSGVDGSLSKQMYEYGRNL-GLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK 348 (421)
Q Consensus 274 a~Lf~~a~~~gailag~~~~~~~~l~~~G~~l-G~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~ 348 (421)
+.+|......|....+..-...--+--.+--+ ..++.+.+|+.|+.+|. ++|+.|+|+.+..++
T Consensus 140 ~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr-----------~~G~~Tlpv~lG~~~ 204 (282)
T PRK13105 140 STHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADR-----------EAGIASIATVLGARR 204 (282)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHH-----------HcCCccchHHhcHHH
No 44
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=25.81 E-value=6e+02 Score=25.47 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCCCC------------CCCCCCchhhhhcCH
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLDES------------DMRRGQETVHQLYGT 207 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD~s------------~~RRG~pt~h~~~G~ 207 (421)
+....+...-..+=.|+-|.|||.|-. +.+.|++|+-..++.
T Consensus 194 ~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l 247 (322)
T COG0142 194 ELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLAL 247 (322)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHH
Confidence 445566777888889999999997743 345566666554443
No 45
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.44 E-value=1.6e+02 Score=30.49 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHcCCChhHHHHHH--HHHHHHHHHHHHHHhhhhccc
Q 014627 273 TASLIAASTKGAAIFSGVDGSLSKQMY--EYGRNLGLSFQIVDDILDFTQ 320 (421)
Q Consensus 273 Ta~Lf~~a~~~gailag~~~~~~~~l~--~~G~~lG~afQI~DDllD~~~ 320 (421)
||..++++|.......|.+-- +.+. -+|..||+. .||+-|+-+
T Consensus 371 tGv~IAaa~m~lss~tgnPIy--D~~GSivvGaLLGmV---e~diyDvK~ 415 (503)
T KOG2802|consen 371 TGVIIAAACMGLSSITGNPIY--DSLGSIVVGALLGMV---ENDIYDVKA 415 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCc--cccchHHHHHHHHHH---HHhhhhccc
Confidence 666677777776666664311 2232 378889987 899888854
No 46
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=24.36 E-value=7e+02 Score=24.70 Aligned_cols=159 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCcCCCCCCC---CCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc--------CcHHHHHH
Q 014627 168 HRRLAEIIEMIHTASLIHDDVLDESDMR---RGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL--------ENLEVIKL 236 (421)
Q Consensus 168 ~~~lA~avEllH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~--------~~~~v~~~ 236 (421)
..-...+.=++|.++-++.|+.|.+..+ |.+|...-....+.+...+-.++..++-...-+ ...-.+-.
T Consensus 56 ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~ 135 (306)
T TIGR02056 56 ALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL 135 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHc----------CCChhHHHHHHHHHHHHH
Q 014627 237 ISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFS----------GVDGSLSKQMYEYGRNLG 306 (421)
Q Consensus 237 ~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gaila----------g~~~~~~~~l~~~G~~lG 306 (421)
+.-.+--+..+ --...|.-.++......+.... |.-+...-.+.-.---..
T Consensus 136 ~~~~~~~~Yt~-------------------gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~ 196 (306)
T TIGR02056 136 FGSFIAFIYSA-------------------PPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAG 196 (306)
T ss_pred HHHHHHHHHcC-------------------ChhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHH
Q 014627 307 LSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREII 356 (421)
Q Consensus 307 ~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l 356 (421)
.++-+.||+.|+. .|.+.|+.|+|+.+..+....+...+
T Consensus 197 ~~i~~~n~~~D~e-----------~D~~~G~~Tlpv~lG~~~a~~~~~~l 235 (306)
T TIGR02056 197 LGIAIVNDFKSVE-----------GDRALGLQSLPVAFGIETAAWICVGA 235 (306)
T ss_pred HHHHHHHHccChH-----------HHHHcCCcCcchhcChHHHHHHHHHH
No 47
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=24.29 E-value=7.3e+02 Score=24.87 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 286 IFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 286 ilag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
...|.+.+....+...-+.|=.+..|.||+.|= ++++.|++|+-..|.
T Consensus 57 ~~~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~G 104 (323)
T PRK10888 57 RAVGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAFG 104 (323)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHhC
Confidence 334545544445666667777888999999873 577888888776653
No 48
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=22.39 E-value=1e+03 Score=25.75 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHH-HHHHHHHc-CCChhHHHHHH---HHHHHH
Q 014627 232 EVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAAS-TKGAAIFS-GVDGSLSKQMY---EYGRNL 305 (421)
Q Consensus 232 ~v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a-~~~gaila-g~~~~~~~~l~---~~G~~l 305 (421)
.....+.+....++.+-+.++.+.. ...++.++|+..-..-+|...... +..+ .+ ..+++..+.+. ++-...
T Consensus 356 ~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~ 433 (542)
T cd00684 356 YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVRAS 433 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHHHH
Confidence 4455666777777777777766543 346799999987655444443222 1222 11 13555554433 577778
Q ss_pred HHHHHHHHhhhhcccchhhhCCCCcccccCCc-ccHHHHHHhh
Q 014627 306 GLSFQIVDDILDFTQSAEQLGKPAASDLAKGN-LTAPVIFALE 347 (421)
Q Consensus 306 G~afQI~DDllD~~~d~~~~GK~~g~DL~egk-~TlP~l~al~ 347 (421)
+....+.||+..+-... ..|. .+...+|.-+
T Consensus 434 ~~i~rL~NDi~S~~kE~-----------~rGdv~n~V~~ymke 465 (542)
T cd00684 434 STIGRLMNDIATYEDEM-----------KRGDVASSIECYMKE 465 (542)
T ss_pred HHHHHHhcChhhhHHHH-----------hcCCcccHHHHHHHh
Confidence 88899999999984321 2333 4676676544
No 49
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=20.15 E-value=63 Score=27.18 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhcccchhhhCCCC
Q 014627 307 LSFQIVDDILDFTQSAEQLGKPA 329 (421)
Q Consensus 307 ~afQI~DDllD~~~d~~~~GK~~ 329 (421)
-..+|.+|++|++.....-|+|+
T Consensus 45 ~~~~il~dildlfEe~aadG~~V 67 (103)
T PF06304_consen 45 DMMEILSDILDLFEEAAADGKSV 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHcCCCh
Confidence 35699999999998777677753
No 50
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=20.11 E-value=6.2e+02 Score=25.13 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHc---CCChhH-----HHHHHHHHHHHHHHHHHHHhhhhcccchhh----h
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFS---GVDGSL-----SKQMYEYGRNLGLSFQIVDDILDFTQSAEQ----L 325 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gaila---g~~~~~-----~~~l~~~G~~lG~afQI~DDllD~~~d~~~----~ 325 (421)
...+...|++..+-+|-.+.-.+...|+.++ +...+. .-...-+....|. +.||+.|..-|..+ +
T Consensus 1 ~~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~---~iND~~D~~~D~~~v~rtm 77 (297)
T PRK12871 1 MKETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGF---VLNDYVDRKRDRLDVENTL 77 (297)
T ss_pred CcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---HHhhHHHHhcCcchHhhhh
Q ss_pred C---CC-CcccccCCcccHHHHHHh
Q 014627 326 G---KP-AASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 326 G---K~-~g~DL~egk~TlP~l~al 346 (421)
+ || ...=+..|+.|.-..+.+
T Consensus 78 ~r~~~P~~~Rpl~sG~is~~~a~~~ 102 (297)
T PRK12871 78 TRYWRPFKERPIPSGKLSSKNAFAL 102 (297)
T ss_pred hccccCCCCCccCCCCcCHHHHHHH
Done!