Query 014627
Match_columns 421
No_of_seqs 216 out of 1564
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 2.5E-70 8.6E-75 548.7 36.6 324 91-420 16-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 1.8E-69 6.2E-74 542.2 36.9 320 95-420 7-332 (341)
3 3rmg_A Octaprenyl-diphosphate 100.0 1.6E-68 5.4E-73 534.3 30.7 316 98-420 5-325 (334)
4 3pko_A Geranylgeranyl pyrophos 100.0 2.5E-68 8.7E-73 532.8 27.7 316 101-421 16-334 (334)
5 1wy0_A Geranylgeranyl pyrophos 100.0 1E-67 3.6E-72 530.6 32.0 316 100-421 5-342 (342)
6 3lmd_A Geranylgeranyl pyrophos 100.0 9.1E-68 3.1E-72 532.4 29.1 314 100-420 34-351 (360)
7 3nf2_A Putative polyprenyl syn 100.0 8.3E-67 2.8E-71 524.8 31.1 311 104-420 7-343 (352)
8 3aqb_B Component B of hexapren 100.0 5.6E-67 1.9E-71 521.8 29.6 313 102-421 6-325 (325)
9 3apz_A Geranyl diphosphate syn 100.0 8.6E-68 2.9E-72 532.3 23.9 319 103-421 11-348 (348)
10 4dhd_A Polyprenyl synthetase; 100.0 8.9E-66 3.1E-70 518.6 31.8 311 102-421 6-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 2.6E-65 9E-70 510.7 29.7 305 108-421 7-330 (330)
12 3lk5_A Geranylgeranyl pyrophos 100.0 1.7E-63 5.9E-68 505.1 32.9 323 98-420 17-372 (380)
13 3tc1_A Octaprenyl pyrophosphat 100.0 1.3E-63 4.5E-68 494.6 29.2 297 110-417 6-307 (315)
14 1v4e_A Octoprenyl-diphosphate 100.0 2.6E-63 8.9E-68 489.6 27.9 281 106-404 9-289 (299)
15 2e8v_A Geranylgeranyl pyrophos 100.0 1.7E-63 5.8E-68 499.3 23.1 300 112-418 9-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 1.9E-62 6.3E-67 484.1 23.8 291 117-420 2-296 (301)
17 3uca_A Geranyltranstransferase 100.0 9.8E-62 3.4E-66 481.9 26.1 286 95-421 26-324 (324)
18 2h8o_A Geranyltranstransferase 100.0 5.6E-61 1.9E-65 479.0 30.0 279 101-421 38-335 (335)
19 1yhl_A Farnesyl pyrophosphate 100.0 9.3E-61 3.2E-65 483.5 31.8 293 126-420 34-361 (362)
20 2qis_A Farnesyl pyrophosphate 100.0 9.5E-61 3.2E-65 484.7 31.3 293 126-420 64-373 (374)
21 3ts7_A Geranyltranstransferase 100.0 6.8E-61 2.3E-65 475.9 29.4 277 102-420 9-301 (324)
22 4f62_A Geranyltranstransferase 100.0 1.4E-60 4.8E-65 472.4 30.0 277 102-420 5-294 (317)
23 3lsn_A Geranyltranstransferase 100.0 1.2E-60 4.2E-65 471.0 29.4 276 103-420 4-295 (304)
24 1rtr_A Geranyltranstransferase 100.0 6.1E-61 2.1E-65 473.1 25.0 273 109-421 9-293 (301)
25 1rqj_A Geranyltranstransferase 100.0 5.6E-61 1.9E-65 473.2 24.3 280 102-421 3-299 (299)
26 1uby_A FPS, farnesyl diphospha 100.0 6.1E-60 2.1E-64 477.7 31.4 294 126-421 57-367 (367)
27 3p8l_A Geranyltranstransferase 100.0 2E-60 6.8E-65 468.9 26.1 273 108-419 16-302 (302)
28 3p8r_A Geranyltranstransferase 100.0 1.4E-60 4.9E-65 470.3 24.8 275 105-421 12-302 (302)
29 2ihi_A Pyrophosphate synthase; 100.0 1.5E-60 5.2E-65 485.5 25.5 319 97-420 34-395 (395)
30 2her_A Fragment, farnesyl pyro 100.0 6E-61 2.1E-65 483.4 20.7 312 96-420 25-355 (368)
31 3mav_A Farnesyl pyrophosphate 100.0 2E-59 7E-64 478.6 30.8 316 99-419 36-394 (395)
32 3lom_A Geranyltranstransferase 100.0 1.5E-59 5.3E-64 464.7 28.6 277 102-420 9-302 (313)
33 3m0g_A Farnesyl diphosphate sy 100.0 8.3E-60 2.8E-64 463.7 26.0 272 104-420 5-288 (297)
34 3dyh_A Farnesyl pyrophosphate 100.0 5.5E-60 1.9E-64 481.2 25.5 292 127-420 57-389 (390)
35 3pde_A Farnesyl-diphosphate sy 100.0 1.3E-59 4.5E-64 463.9 26.1 279 101-420 7-299 (309)
36 2ftz_A Geranyltranstransferase 100.0 1.2E-58 3.9E-63 452.9 28.9 264 111-419 16-284 (284)
37 3ipi_A Geranyltranstransferase 100.0 6.6E-59 2.3E-63 456.9 26.0 271 111-420 12-283 (295)
38 3llw_A Geranyltranstransferase 100.0 6.6E-57 2.3E-61 445.5 30.3 272 113-420 18-304 (311)
39 2q58_A Fragment, farnesyl pyro 100.0 1.9E-56 6.4E-61 452.6 21.9 283 128-420 60-359 (368)
40 3npk_A Geranyltranstransferase 100.0 1.8E-55 6.1E-60 431.5 27.5 266 111-418 7-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 1.9E-55 6.5E-60 431.4 24.4 261 108-420 17-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 2.8E-54 9.6E-59 424.2 28.2 264 104-421 15-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 1.1E-50 3.8E-55 395.3 12.3 220 102-336 6-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 5.3E-46 1.8E-50 362.0 24.6 198 111-315 10-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 4.1E-45 1.4E-49 355.6 25.9 210 95-317 2-224 (273)
46 4hd1_A Squalene synthase HPNC; 94.0 4 0.00014 39.1 18.6 131 242-403 107-237 (294)
47 3vj8_A Squalene synthase; farn 93.7 0.4 1.4E-05 47.3 11.2 145 233-403 112-256 (343)
48 3acx_A Dehydrosqualene synthas 92.7 2.5 8.7E-05 40.3 14.9 134 241-404 110-243 (293)
49 3kb9_A EPI-isozizaene synthase 91.6 6.6 0.00023 38.8 16.9 90 230-320 175-268 (382)
50 3lsn_A Geranyltranstransferase 83.1 3.2 0.00011 40.1 8.1 82 167-248 204-299 (304)
51 4f62_A Geranyltranstransferase 75.0 7.7 0.00026 37.7 8.0 64 166-229 202-277 (317)
52 1rtr_A Geranyltranstransferase 75.0 6.8 0.00023 37.7 7.5 64 166-229 198-273 (301)
53 3m0g_A Farnesyl diphosphate sy 74.7 8.2 0.00028 37.1 8.0 60 170-229 200-271 (297)
54 3uca_A Geranyltranstransferase 74.2 11 0.00038 36.6 8.9 64 166-229 231-306 (324)
55 3g4d_A (+)-delta-cadinene synt 71.2 92 0.0032 32.4 15.5 86 232-320 366-458 (554)
56 3aqb_A Component A of hexapren 71.1 4.4 0.00015 34.6 4.4 40 210-249 72-111 (147)
57 3ts7_A Geranyltranstransferase 69.5 12 0.0004 36.5 7.8 64 167-230 210-285 (324)
58 3p8l_A Geranyltranstransferase 69.3 15 0.00051 35.4 8.4 63 166-228 206-280 (302)
59 3v1v_A 2-MIB synthase, 2-methy 68.8 1E+02 0.0034 31.0 15.9 88 230-320 253-345 (433)
60 2h8o_A Geranyltranstransferase 66.9 15 0.00051 35.9 8.0 64 166-229 242-317 (335)
61 3lom_A Geranyltranstransferase 65.9 16 0.00054 35.4 7.9 64 166-229 210-285 (313)
62 3n0f_A Isoprene synthase; terp 64.6 1E+02 0.0035 32.1 14.3 85 233-319 365-455 (555)
63 3p8r_A Geranyltranstransferase 63.8 12 0.0004 36.1 6.5 62 168-229 211-284 (302)
64 1ps1_A Pentalenene synthase; a 61.0 1.1E+02 0.0038 28.8 15.1 91 230-320 132-226 (337)
65 3ipi_A Geranyltranstransferase 58.7 35 0.0012 32.6 8.8 63 167-229 188-264 (295)
66 3m00_A Aristolochene synthase; 57.9 1.3E+02 0.0045 31.2 13.6 85 233-320 363-453 (550)
67 3pde_A Farnesyl-diphosphate sy 55.5 28 0.00095 33.6 7.5 61 167-227 206-278 (309)
68 3nf2_A Putative polyprenyl syn 49.7 1.1E+02 0.0037 29.8 10.9 51 283-345 64-114 (352)
69 3mzv_A Decaprenyl diphosphate 48.3 1.5E+02 0.0052 28.6 11.7 51 283-345 63-113 (341)
70 3rmg_A Octaprenyl-diphosphate 46.8 1.4E+02 0.0048 28.8 11.1 49 287-347 61-109 (334)
71 3llw_A Geranyltranstransferase 45.6 1.1E+02 0.0038 29.2 10.1 59 169-227 213-281 (311)
72 2q80_A Geranylgeranyl pyrophos 43.3 2.2E+02 0.0074 26.9 12.1 47 288-346 40-86 (301)
73 1di1_A Aristolochene synthase; 42.0 2.1E+02 0.0071 26.3 16.9 64 258-321 150-213 (300)
74 1n1b_A (+)-bornyl diphosphate 40.3 1.9E+02 0.0063 30.0 11.4 84 234-320 363-454 (549)
75 1rqj_A Geranyltranstransferase 37.5 28 0.00096 33.2 4.3 61 167-227 204-276 (299)
76 3oyr_A Trans-isoprenyl diphosp 36.7 1.2E+02 0.004 29.5 8.7 40 167-206 213-264 (345)
77 3sdr_A Alpha-bisabolene syntha 35.9 1.8E+02 0.0063 31.7 10.9 85 234-320 627-720 (817)
78 3npk_A Geranyltranstransferase 35.3 1.6E+02 0.0056 27.8 9.3 63 167-229 196-268 (291)
79 4fp4_A Polyprenyl synthetase; 35.1 2.9E+02 0.01 26.0 12.4 43 291-345 66-108 (285)
80 2e8v_A Geranylgeranyl pyrophos 34.7 3.1E+02 0.011 26.2 12.0 46 288-345 55-100 (340)
81 2azj_A Geranylgeranyl pyrophos 33.2 1.9E+02 0.0066 27.2 9.5 63 167-229 189-260 (289)
82 3p5p_A Taxadiene synthase; cla 33.1 2.8E+02 0.0097 30.0 11.7 86 233-320 567-658 (764)
83 3aqb_B Component B of hexapren 32.6 3.3E+02 0.011 25.8 11.5 50 284-345 55-104 (325)
84 1v4e_A Octoprenyl-diphosphate 32.5 3E+02 0.01 25.9 10.8 43 291-345 59-101 (299)
85 2ftz_A Geranyltranstransferase 32.4 3.2E+02 0.011 25.6 11.7 46 288-345 61-108 (284)
86 2ong_A 4S-limonene synthase; m 31.1 4.5E+02 0.015 27.0 15.8 86 233-320 356-447 (543)
87 4dhd_A Polyprenyl synthetase; 28.7 2.7E+02 0.0093 27.0 9.9 45 289-345 61-105 (358)
88 3pko_A Geranylgeranyl pyrophos 26.9 3.3E+02 0.011 26.0 10.1 45 290-346 73-117 (334)
89 3mhs_B Protein SUS1; multi-pro 22.9 2.3E+02 0.0078 22.3 6.6 67 350-416 6-89 (96)
90 1wy0_A Geranylgeranyl pyrophos 22.8 3.1E+02 0.011 26.2 9.0 47 288-346 61-107 (342)
91 4dhx_B Enhancer of yellow 2 tr 22.6 1.5E+02 0.0052 23.6 5.5 70 349-418 9-97 (101)
92 3bny_A Aristolochene synthase; 21.8 4.7E+02 0.016 24.0 16.4 63 258-320 164-226 (320)
93 2j1p_A Geranylgeranyl pyrophos 21.6 2E+02 0.0068 27.1 7.2 61 166-228 213-273 (293)
94 1wmw_A Geranylgeranyl diphosph 20.4 3.5E+02 0.012 25.7 8.8 49 285-345 51-99 (330)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=2.5e-70 Score=548.75 Aligned_cols=324 Identities=31% Similarity=0.526 Sum_probs=272.4
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHH
Q 014627 91 EKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRR 170 (421)
Q Consensus 91 ~~~~~~~~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~ 170 (421)
+.-..++++.+++..+.++++.|++.|++.+.+.+|.+.++++|++..||||+||.|+++++++++ .+ .+.+.+
T Consensus 16 ~~~~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g----~~--~~~~~~ 89 (345)
T 3oyr_A 16 TLPRKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAG----AD--NDHFQK 89 (345)
T ss_dssp ----CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTT----CC--SSTHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHH
Confidence 333446789999999999999999999999999999999999999999999999999999988764 22 356789
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHH
Q 014627 171 LAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIK 250 (421)
Q Consensus 171 lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~ 250 (421)
+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+++++..+.++++++++++..++.||+.
T Consensus 90 ~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~ 169 (345)
T 3oyr_A 90 LAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVL 169 (345)
T ss_dssp HHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCc
Q 014627 251 QASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 330 (421)
Q Consensus 251 q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g 330 (421)
|+....+.++++++|++|+++|||+||+++|++|++++|++++..+.+++||++||+||||+||++|++++++.+|||.|
T Consensus 170 dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g 249 (345)
T 3oyr_A 170 QLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAG 249 (345)
T ss_dssp HHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCcc
Confidence 98877777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccHHHHHHhhh-ChHHHHHHHhhcC----CcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014627 331 SDLAKGNLTAPVIFALEK-EPKLREIIESEFC----ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 405 (421)
Q Consensus 331 ~DL~egk~TlP~l~al~~-~~~~~~~l~~~~~----~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 405 (421)
+||++||+|||++++++. +++.++.+.+.+. +++++++++++++++|+++++++.+++|.++|++.|+.||+++.
T Consensus 250 ~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~ 329 (345)
T 3oyr_A 250 DDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDW 329 (345)
T ss_dssp -------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHH
T ss_pred chhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999997 5666666655543 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 014627 406 RVALEDMVMFNLERF 420 (421)
Q Consensus 406 r~~L~~l~~~~~~R~ 420 (421)
++.|..|++|+++|.
T Consensus 330 ~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 330 REALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.8e-69 Score=542.24 Aligned_cols=320 Identities=31% Similarity=0.507 Sum_probs=281.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHH
Q 014627 95 SPISLANIFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE 173 (421)
Q Consensus 95 ~~~~~~~l~~~i~~dl~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~ 173 (421)
.|+++.+++..+.++++.|++.|.+.+.+. +|.+.++++|++..||||+||.|+++++++++ .+ .+.+.++|+
T Consensus 7 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g----~~--~~~~~~~A~ 80 (341)
T 3mzv_A 7 ATKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVG----YG--GPFHVHLAA 80 (341)
T ss_dssp --CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTT----CC--CSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHH
Confidence 578899999999999999999999999988 89999999999999999999999999988764 22 357889999
Q ss_pred HHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhh
Q 014627 174 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQAS 253 (421)
Q Consensus 174 avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~ 253 (421)
++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+++++..+.++++.+++++..++.||+.|+.
T Consensus 81 aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 160 (341)
T 3mzv_A 81 TVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLT 160 (341)
T ss_dssp HHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999988
Q ss_pred hccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccc
Q 014627 254 SLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 333 (421)
Q Consensus 254 ~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL 333 (421)
...+.++++++|++|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+|||.|+||
T Consensus 161 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl 240 (341)
T 3mzv_A 161 AAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDF 240 (341)
T ss_dssp HTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHH
T ss_pred hccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCccc
Confidence 77677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhhh-ChHHHHHHHhhc----CCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014627 334 AKGNLTAPVIFALEK-EPKLREIIESEF----CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 408 (421)
Q Consensus 334 ~egk~TlP~l~al~~-~~~~~~~l~~~~----~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~ 408 (421)
++||+|||++++++. ++..+..+.+.+ .+++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.
T Consensus 241 ~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 320 (341)
T 3mzv_A 241 RERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQM 320 (341)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred ccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999998 445555554443 356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 014627 409 LEDMVMFNLERF 420 (421)
Q Consensus 409 L~~l~~~~~~R~ 420 (421)
|..|++|+++|.
T Consensus 321 L~~la~~~~~r~ 332 (341)
T 3mzv_A 321 LDDLADYVVERV 332 (341)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHHhcc
Confidence 999999999995
No 3
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-68 Score=534.27 Aligned_cols=316 Identities=31% Similarity=0.457 Sum_probs=270.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHH
Q 014627 98 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEM 177 (421)
Q Consensus 98 ~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEl 177 (421)
++..++..|.++++.|++.+++.+.+.+|.+.++++|.+..||||+||.|+++++++++ . ..+++.++|+++||
T Consensus 5 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g----~--~~~~~~~~A~aiEl 78 (334)
T 3rmg_A 5 SISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRNGKMMRPILVLLVARLYG----A--VTPATLHAAVSLEL 78 (334)
T ss_dssp HHHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC----CHHHHHHHHHHHHHS----C--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----C--ChHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999988764 2 34788999999999
Q ss_pred HHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 014627 178 IHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 257 (421)
Q Consensus 178 lH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~ 257 (421)
||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+++++...+.++++++++++..++.||+.|+....+
T Consensus 79 iH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~ 158 (334)
T 3rmg_A 79 LHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSN 158 (334)
T ss_dssp HHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999887666
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCc
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGN 337 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk 337 (421)
..+++++|+.|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++ +++.+|||.|+||++||
T Consensus 159 ~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK 237 (334)
T 3rmg_A 159 HSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGK 237 (334)
T ss_dssp --CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTC
T ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCc
Confidence 67899999999999999999999999999999999999999999999999999999999999 68899999999999999
Q ss_pred ccHHHHHHhhh-Ch----HHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 014627 338 LTAPVIFALEK-EP----KLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDM 412 (421)
Q Consensus 338 ~TlP~l~al~~-~~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l 412 (421)
+|||++++++. ++ .+.+++.+...+++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.|..|
T Consensus 238 ~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l 317 (334)
T 3rmg_A 238 LTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLALRTY 317 (334)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999997 44 34455555555677899999999999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q 014627 413 VMFNLERF 420 (421)
Q Consensus 413 ~~~~~~R~ 420 (421)
++|+++|.
T Consensus 318 ~~~~~~R~ 325 (334)
T 3rmg_A 318 LDYVVARE 325 (334)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 99999995
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=2.5e-68 Score=532.77 Aligned_cols=316 Identities=28% Similarity=0.431 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014627 101 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 180 (421)
Q Consensus 101 ~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~ 180 (421)
+.|+.|.+|++.|++.|.+.+...+|.+.++++|.+..||||+||.|++++++ + |.+...+.+.++|+++||||+
T Consensus 16 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~----g~~~~~~~~~~~A~aiEliH~ 90 (334)
T 3pko_A 16 RQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFST-F----GNAATPAQLQAGAAAIEILHV 90 (334)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-T----CSCCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-H----cCCCCHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999998876 3 221234678899999999999
Q ss_pred HHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014627 181 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEIKQASSLFDCD 259 (421)
Q Consensus 181 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~ 259 (421)
||||||||||+|++|||+||+|.+||+++|||+||||+++|++++++..+ +++++.+++++..++.||+.|+....+..
T Consensus 91 asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~ 170 (334)
T 3pko_A 91 GTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYRED 170 (334)
T ss_dssp HHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999998764 78999999999999999999988777778
Q ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 260 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 260 ~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|
T Consensus 171 ~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T 250 (334)
T 3pko_A 171 ITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYS 250 (334)
T ss_dssp CCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCh-HHHHHHH-hhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014627 340 APVIFALEKEP-KLREIIE-SEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 417 (421)
Q Consensus 340 lP~l~al~~~~-~~~~~l~-~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~ 417 (421)
||++++++..+ ++++++. +...+++++++++++++++|+++++++.+++|.++|++.|+.+|.++.++.|..|+++++
T Consensus 251 lp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~ 330 (334)
T 3pko_A 251 LPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLL 330 (334)
T ss_dssp HHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999854 7777774 333466789999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 014627 418 ERFV 421 (421)
Q Consensus 418 ~R~~ 421 (421)
+|..
T Consensus 331 ~R~~ 334 (334)
T 3pko_A 331 RRDH 334 (334)
T ss_dssp TCC-
T ss_pred hccC
Confidence 9963
No 5
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-67 Score=530.56 Aligned_cols=316 Identities=32% Similarity=0.483 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014627 100 ANIFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 178 (421)
Q Consensus 100 ~~l~~~i~~dl~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEll 178 (421)
..++..+.++++.|++.|.+.+... +|.+.++++|++..||||+||.|++++++++ |.+ .+.+.++|+++|||
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~----g~~--~~~~~~~A~avEli 78 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAV----GGD--PLRAIYPAVAIELI 78 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTT----TSC--GGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHc----CCC--HHHHHHHHHHHHHH
Confidence 4577788899999999999999887 8899999999999999999999999887764 332 24678999999999
Q ss_pred HHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhHHHHHhh
Q 014627 179 HTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQAS 253 (421)
Q Consensus 179 H~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Ge~~q~~ 253 (421)
|+||||||||||+|++|||+||+|.+||+++|||+||||+++||+++++. .+.++++.+++++..++.||+.|+.
T Consensus 79 H~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 158 (342)
T 1wy0_A 79 HNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLE 158 (342)
T ss_dssp HHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 3567899999999999999999988
Q ss_pred hccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccc
Q 014627 254 SLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 333 (421)
Q Consensus 254 ~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL 333 (421)
...+...++++|++|+++|||+||.++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||
T Consensus 159 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 238 (342)
T 1wy0_A 159 FEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDI 238 (342)
T ss_dssp HTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHH
T ss_pred cccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHH
Confidence 77666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhhh-ChHHHHHHHhhcCC---------------cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHh
Q 014627 334 AKGNLTAPVIFALEK-EPKLREIIESEFCE---------------TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNL 397 (421)
Q Consensus 334 ~egk~TlP~l~al~~-~~~~~~~l~~~~~~---------------~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 397 (421)
++||+|||++++++. ++..++.+.+.+.. ++++++++++++++|+++++++.+++|.++|++.|
T Consensus 239 ~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L 318 (342)
T 1wy0_A 239 RKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEAL 318 (342)
T ss_dssp HHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTG
T ss_pred hCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 56677777776654 35688999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhccCC
Q 014627 398 HCLPRSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 398 ~~lp~~~~r~~L~~l~~~~~~R~~ 421 (421)
+.+|+++.++.|..+++++++|.+
T Consensus 319 ~~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 319 RILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp GGSCCCHHHHHHHHHHHHTTTCC-
T ss_pred HhCCCcHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999974
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=9.1e-68 Score=532.36 Aligned_cols=314 Identities=27% Similarity=0.468 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014627 100 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 179 (421)
Q Consensus 100 ~~l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH 179 (421)
.+++..+.++++.|++.|++.+...+|.+.++++|++..||||+||.|++++++++ |. ...+.++++|+++||||
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~----~~-~~~~~~~~~A~avEliH 108 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFG----EK-PLSENVIKAAVVVEITH 108 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTS----SS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCCCCcHHHHHHHHHHHHh----CC-CChHHHHHHHHHHHHHH
Confidence 57788899999999999999999989999999999999999999999999887653 31 23467899999999999
Q ss_pred HHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCC
Q 014627 180 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCD 259 (421)
Q Consensus 180 ~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~ 259 (421)
+||||||||||+|++|||+||+|.+||++.|||+||||+++|+++++++. +++++++++++..++.||+.|+....+.
T Consensus 109 ~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~- 186 (360)
T 3lmd_A 109 LATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT- 186 (360)
T ss_dssp HHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS-
T ss_pred HHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 99999999999999999999999999999999999999999999999876 4889999999999999999998766555
Q ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 260 LELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 260 ~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
+++++|++|+++|||+||+++|++|++++|++++..+.+++||++||+||||+||++|++++++.+|||.|+||++||+|
T Consensus 187 ~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T 266 (360)
T 3lmd_A 187 DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFT 266 (360)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCh----HHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 014627 340 APVIFALEKEP----KLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMF 415 (421)
Q Consensus 340 lP~l~al~~~~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~ 415 (421)
||++++++..+ ++++++.+...+++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.|..|++|
T Consensus 267 lp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~La~~ 346 (360)
T 3lmd_A 267 LPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATF 346 (360)
T ss_dssp HHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999843 34444444444567899999999999999999999999999999999999999999999999999
Q ss_pred HhccC
Q 014627 416 NLERF 420 (421)
Q Consensus 416 ~~~R~ 420 (421)
+++|.
T Consensus 347 ~~~R~ 351 (360)
T 3lmd_A 347 TVKRV 351 (360)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99995
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=8.3e-67 Score=524.79 Aligned_cols=311 Identities=27% Similarity=0.401 Sum_probs=282.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH-----------cCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHH
Q 014627 104 EVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIF-----------GAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLA 172 (421)
Q Consensus 104 ~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~-----------~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA 172 (421)
+.+..-.+.|+..|++.+++.+|.+.+++.|.+ ..||||+||+|+++++++++ .+ .+.++++|
T Consensus 7 ~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g----~~--~~~~~~~A 80 (352)
T 3nf2_A 7 ALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTG----AA--PEVGVPGA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTT----CC--GGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcC----CC--HHHHHHHH
Confidence 344555678899999999999999999999988 68999999999999988754 22 35788999
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcH---HHHHHHHHHHHHHHhHHH
Q 014627 173 EIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL---EVIKLISQVIKDFASGEI 249 (421)
Q Consensus 173 ~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~---~v~~~~s~~~~~l~~Ge~ 249 (421)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||++++++++++..++ ++++++++++..++.||+
T Consensus 81 ~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~ 160 (352)
T 3nf2_A 81 VAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQA 160 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765 788999999999999999
Q ss_pred HHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCC
Q 014627 250 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 329 (421)
Q Consensus 250 ~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~ 329 (421)
.|+....+..+++++|++|+++|||+||+++|++|++++|++++.++.+++||++||+||||+||++|++++++.+|||.
T Consensus 161 ~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~ 240 (352)
T 3nf2_A 161 QDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQT 240 (352)
T ss_dssp HHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCT
T ss_pred HHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCc
Confidence 99887766688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHhhh-Ch---HHHHHHHhhc-------CCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhc
Q 014627 330 ASDLAKGNLTAPVIFALEK-EP---KLREIIESEF-------CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH 398 (421)
Q Consensus 330 g~DL~egk~TlP~l~al~~-~~---~~~~~l~~~~-------~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 398 (421)
|+||++||+|||++++++. ++ ++.+++.+.. .+++++++++++++++|+++++++.+++|.++|++.|+
T Consensus 241 g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~ 320 (352)
T 3nf2_A 241 WSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALD 320 (352)
T ss_dssp THHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 34 3455555432 35577999999999999999999999999999999999
Q ss_pred cCCC-ChHHHHHHHHHHHHhccC
Q 014627 399 CLPR-SPFRVALEDMVMFNLERF 420 (421)
Q Consensus 399 ~lp~-~~~r~~L~~l~~~~~~R~ 420 (421)
.+|+ ++.|+.|..|++++++|.
T Consensus 321 ~lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 321 AVDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp TSCCCHHHHHHHHHHHHHHCC--
T ss_pred hCCCCcHHHHHHHHHHHHHHhcc
Confidence 9997 789999999999999995
No 8
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.6e-67 Score=521.79 Aligned_cols=313 Identities=29% Similarity=0.456 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 181 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~A 181 (421)
+++.+.++++.|++.|.+.+...+|.+.++++|++..||||+||.+++++++++ |.+ .+.+.++|+++||||+|
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~----g~~--~~~~~~~A~avEliH~a 79 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSGGKRVRPMFVLLSGFLN----DTQ--KDDLIRTAVSLELVHMA 79 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTS----SCC--CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCC--hHHHHHHHHHHHHHHHH
Confidence 456788899999999999998888999999999999999999999999888764 332 36789999999999999
Q ss_pred HhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCC
Q 014627 182 SLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLE 261 (421)
Q Consensus 182 sLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t 261 (421)
|||||||||+|++|||+||+|.+||++.|||+||||++++++++++..+.++++.+++++..++.||+.|+....+..++
T Consensus 80 sLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~ 159 (325)
T 3aqb_B 80 SLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVS 159 (325)
T ss_dssp HHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 99999999999999999999999999999999999999999999998888999999999999999999998776666789
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHH
Q 014627 262 LEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAP 341 (421)
Q Consensus 262 ~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP 341 (421)
+++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|||
T Consensus 160 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p 239 (325)
T 3aqb_B 160 FTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYP 239 (325)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCh-HHHHHHH---hhcCC---cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Q 014627 342 VIFALEKEP-KLREIIE---SEFCE---TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVM 414 (421)
Q Consensus 342 ~l~al~~~~-~~~~~l~---~~~~~---~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~ 414 (421)
++++++..+ ..++.+. +.+.. ++++++++++++++ +++++++.+++|.++|++.|+.+|+++.++.|..+++
T Consensus 240 ~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~ 318 (325)
T 3aqb_B 240 LMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHE 318 (325)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999998733 2333444 44432 46788999999999 9999999999999999999999999999999999999
Q ss_pred HHhccCC
Q 014627 415 FNLERFV 421 (421)
Q Consensus 415 ~~~~R~~ 421 (421)
++++|..
T Consensus 319 ~~~~R~~ 325 (325)
T 3aqb_B 319 KMLKRVY 325 (325)
T ss_dssp HHTTTTC
T ss_pred HHHhCcC
Confidence 9999974
No 9
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=8.6e-68 Score=532.33 Aligned_cols=319 Identities=41% Similarity=0.656 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCC--CccchHHHHHHHHHHHhhhhCC-----------ccccHHHH
Q 014627 103 FEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAG--GKRLRPALVFLVSRATAELVGL-----------KELTTKHR 169 (421)
Q Consensus 103 ~~~i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~g--GKrlRp~Lvll~a~a~~~~~g~-----------~~~~~~~~ 169 (421)
++.+.++++.|++.|++.+.+..|.+.++++|.+..| |||+||.|+++++++++..... .+..+++.
T Consensus 11 ~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (348)
T 3apz_A 11 FSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQR 90 (348)
T ss_dssp TTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHH
Confidence 3456788999999999999988999999999999877 9999999999988875421000 00113568
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHH
Q 014627 170 RLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEI 249 (421)
Q Consensus 170 ~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~ 249 (421)
++|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++++++..+.++++.+++++..++.||+
T Consensus 91 ~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ 170 (348)
T 3apz_A 91 GIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGET 170 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCC
Q 014627 250 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPA 329 (421)
Q Consensus 250 ~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~ 329 (421)
.|+....+..+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+|||.
T Consensus 171 ~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~ 250 (348)
T 3apz_A 171 MEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGS 250 (348)
T ss_dssp HHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSC
T ss_pred HHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcc
Confidence 98765444467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh-----
Q 014627 330 ASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP----- 404 (421)
Q Consensus 330 g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~----- 404 (421)
|+||++||+|||++++++..+++++++.+.+.+++++++++++++++|+++++++.+++|.++|++.|+.+|.++
T Consensus 251 g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~ 330 (348)
T 3apz_A 251 LSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVK 330 (348)
T ss_dssp CHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHH
T ss_pred hhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccH
Confidence 999999999999999999988899999888888888999999999999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHhccCC
Q 014627 405 -FRVALEDMVMFNLERFV 421 (421)
Q Consensus 405 -~r~~L~~l~~~~~~R~~ 421 (421)
.++.|..|++++++|..
T Consensus 331 ~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 331 RSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 79999999999999974
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=8.9e-66 Score=518.60 Aligned_cols=311 Identities=27% Similarity=0.358 Sum_probs=274.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 180 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~ 180 (421)
+...+...++.|++.|.+.+... +|.+.++++|++..||||+||.|+++++++++. ..+.++++|+++||||+
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~------~~~~~~~~A~aiEliH~ 79 (358)
T 4dhd_A 6 VSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSG------QWRPALPAAAIVELIHN 79 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHS------CCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHH
Confidence 34455567788999999988877 788999999999999999999999999988752 23577899999999999
Q ss_pred HHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc-HHHHHHHHHHHHHHHhHHHHHhhhc----
Q 014627 181 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-LEVIKLISQVIKDFASGEIKQASSL---- 255 (421)
Q Consensus 181 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-~~v~~~~s~~~~~l~~Ge~~q~~~~---- 255 (421)
||||||||||+|++|||+||+|.+||++.|||+||||+++|++++..... .++++.+++++..++.||+.|+...
T Consensus 80 asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~ 159 (358)
T 4dhd_A 80 YSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGR 159 (358)
T ss_dssp HHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCC
T ss_pred HHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999976543 6889999999999999999998765
Q ss_pred -------cCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCC
Q 014627 256 -------FDC-DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 327 (421)
Q Consensus 256 -------~~~-~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK 327 (421)
.+. ++++++|++|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+||
T Consensus 160 ~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK 239 (358)
T 4dhd_A 160 SDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGK 239 (358)
T ss_dssp CCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC
Confidence 344 779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcc-cHHHHHHhhh-ChHHHHHHH----hhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCC
Q 014627 328 PAASDLAKGNL-TAPVIFALEK-EPKLREIIE----SEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 401 (421)
Q Consensus 328 ~~g~DL~egk~-TlP~l~al~~-~~~~~~~l~----~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 401 (421)
|.|+||++||+ |||++++++. +++.++.|. +...+++++++++++++++|+++++++.+++|.++|++.|+.||
T Consensus 240 ~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp 319 (358)
T 4dhd_A 240 EIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIP 319 (358)
T ss_dssp CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999 9999999998 555444444 33335678999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014627 402 RSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 402 ~~~~r~~L~~l~~~~~~R~~ 421 (421)
+++ .|..|++|+++|.+
T Consensus 320 ~~~---~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 320 NNG---TLKELLDFIVAREY 336 (358)
T ss_dssp SCH---HHHHHHHHHTTTTT
T ss_pred CCH---HHHHHHHHHHhccc
Confidence 876 89999999999963
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-65 Score=510.73 Aligned_cols=305 Identities=26% Similarity=0.264 Sum_probs=276.2
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcC
Q 014627 108 EDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDD 187 (421)
Q Consensus 108 ~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDD 187 (421)
...+.|++.|.+.+...+|.+.++++|++..||||+||.|+++++++++ . ..+.+.++|+++||||+|||||||
T Consensus 7 ~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~----~--~~~~~~~~A~avEliH~asLihDD 80 (330)
T 1wmw_A 7 AIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHG----A--PLEAGLEAATALELFQNWVLVHDD 80 (330)
T ss_dssp HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT----C--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC----C--CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3345677888888877789999999999999999999999999988754 2 236788999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc-----HHHHHHHHHHHHHHHhHHHHHhhh-ccC-CCC
Q 014627 188 VLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----LEVIKLISQVIKDFASGEIKQASS-LFD-CDL 260 (421)
Q Consensus 188 IiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-----~~v~~~~s~~~~~l~~Ge~~q~~~-~~~-~~~ 260 (421)
|||+|++|||+||+|.+||++.|||+||||+++|++++++..+ .++++.+++++..++.||+.|+.. ..+ .++
T Consensus 81 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~ 160 (330)
T 1wmw_A 81 IEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDL 160 (330)
T ss_dssp HHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred cccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 9999999999999999999999999999999999999988543 689999999999999999999877 666 578
Q ss_pred CHHHHHHHHhcccHHH-HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 261 ELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 261 t~~~Y~~~i~~KTa~L-f~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
++++|++|+++|||+| |+++|++|++++|++++.. +++||.++|+||||+||++|++++++ +|||.|+||++||+|
T Consensus 161 ~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T 237 (330)
T 1wmw_A 161 RPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRT 237 (330)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCC
T ss_pred CHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCC
Confidence 9999999999999999 9999999999999988876 99999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-ChHHHHHHHhhcC----C--cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhc----cCCCChHHHH
Q 014627 340 APVIFALEK-EPKLREIIESEFC----E--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLH----CLPRSPFRVA 408 (421)
Q Consensus 340 lP~l~al~~-~~~~~~~l~~~~~----~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~----~lp~~~~r~~ 408 (421)
||++++++. ++..++.+...+. + ++++++++++++++|+++++++.+++|.++|++.|+ .+|+++.++.
T Consensus 238 ~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~ 317 (330)
T 1wmw_A 238 LILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDH 317 (330)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 999999998 4566666666554 2 457889999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhccCC
Q 014627 409 LEDMVMFNLERFV 421 (421)
Q Consensus 409 L~~l~~~~~~R~~ 421 (421)
|..+++++++|..
T Consensus 318 L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 318 LRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999999963
No 12
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.7e-63 Score=505.10 Aligned_cols=323 Identities=23% Similarity=0.319 Sum_probs=263.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCChH---HHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHH
Q 014627 98 SLANIFEVVAEDLQTLNQNLKSIVGAENPV---LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEI 174 (421)
Q Consensus 98 ~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~---l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~a 174 (421)
++.++...|...|+.+-......+....|. +.+++.|++..||||+||+|+++++++++.........+.++++|++
T Consensus 17 ~~~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~Aaa 96 (380)
T 3lk5_A 17 DLDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS 96 (380)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence 345566667777666655444444333443 67777788889999999999999999875310001234678999999
Q ss_pred HHHHHHHHhhhcCcCCCCCCCCCCchhhhh----------------cCHHHHHHHhHHHHHHHHHHHHccCc-----HHH
Q 014627 175 IEMIHTASLIHDDVLDESDMRRGQETVHQL----------------YGTRVAVLAGDFMFAQSSWYLANLEN-----LEV 233 (421)
Q Consensus 175 vEllH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~AIl~GD~Ll~~a~~~l~~~~~-----~~v 233 (421)
+||||+||||||||||+|++|||+||+|.+ ||++.|||+||||++.+++++++... ..+
T Consensus 97 iEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~ 176 (380)
T 3lk5_A 97 LEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALART 176 (380)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999999999997 69999999999999999999998542 356
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHH-HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 014627 234 IKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIV 312 (421)
Q Consensus 234 ~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~ 312 (421)
+++++.+...++.||+.|+....+..+++++|++|+++|||+| |+.+|++|++++|++++.++.+++||.+||+||||+
T Consensus 177 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~ 256 (380)
T 3lk5_A 177 RDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLR 256 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999998876666789999999999999999 899999999999999999999999999999999999
Q ss_pred HhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh----ChHHHHHHHhhcC---CcccHHHHHHHHHhhCcHHHHHHH
Q 014627 313 DDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK----EPKLREIIESEFC---ETGSLDEAIKLVKTSGGIEEAQEL 385 (421)
Q Consensus 313 DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~----~~~~~~~l~~~~~---~~~~~~~i~~li~~~g~i~~a~~~ 385 (421)
||++|+++|++.+|||.|+||++||+|||++++++. +|+.++.|.+.++ +++++++++++++++|+++++++.
T Consensus 257 DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~ 336 (380)
T 3lk5_A 257 DDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQR 336 (380)
T ss_dssp HHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 999999999999999999999999999999999987 3566676766554 356789999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhccC
Q 014627 386 AKEKANLAIHNLHCLPR-SPFRVALEDMVMFNLERF 420 (421)
Q Consensus 386 a~~~~~~A~~~L~~lp~-~~~r~~L~~l~~~~~~R~ 420 (421)
+++|.++|++.|+.+|. ++.|+.|..|++++..|.
T Consensus 337 ~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 337 ISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 99999999999999995 679999999999999874
No 13
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.3e-63 Score=494.64 Aligned_cols=297 Identities=28% Similarity=0.377 Sum_probs=247.1
Q ss_pred HHHHHHHHHHhhCC-CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCcc-ccHHHHHHHHHHHHHHHHHhhhcC
Q 014627 110 LQTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKE-LTTKHRRLAEIIEMIHTASLIHDD 187 (421)
Q Consensus 110 l~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~-~~~~~~~lA~avEllH~AsLIHDD 187 (421)
++.|++.|.+.+.. ..|.+.+ .|.+..||||+||.|++++++. +... ..+++.++|+++||||+|||||||
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~-----~~~~~~~~~~~~~A~aiEliH~asLiHDD 78 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNE-----KTDAILLDKALNLCTIVEMIQTASLLHDD 78 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhcc-----CccccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 45677777776653 3444443 4667799999999999986651 1111 125667999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHH
Q 014627 188 VLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLI 267 (421)
Q Consensus 188 IiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~ 267 (421)
|||+|++|||+||+|.+||+++|||+||||+++|++++++.. +++++++++++..++.||+.|+....+..+++++|++
T Consensus 79 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 157 (315)
T 3tc1_A 79 VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWR 157 (315)
T ss_dssp TC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred CCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999887 8899999999999999999998876666789999999
Q ss_pred HHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhh
Q 014627 268 KSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 347 (421)
Q Consensus 268 ~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~ 347 (421)
|+++|||+||+++|++|++++|++ .+.+++||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++
T Consensus 158 ~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~ 234 (315)
T 3tc1_A 158 ILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYE 234 (315)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHT
T ss_pred HHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHH
Confidence 999999999999999999999988 67899999999999999999999999999999999999999999999999999
Q ss_pred h-ChHHHHHHHhhcC--CcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 014627 348 K-EPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNL 417 (421)
Q Consensus 348 ~-~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~ 417 (421)
. +++.++.+.+.+. +++++++++++++++|+++++++.+++|.++|++.|+.||+++.|+.|..|++|+.
T Consensus 235 ~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 235 KLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRTF 307 (315)
T ss_dssp TSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC--
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 8 6777777776655 45678999999999999999999999999999999999999999999999998764
No 14
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=2.6e-63 Score=489.61 Aligned_cols=281 Identities=26% Similarity=0.409 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhh
Q 014627 106 VAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 185 (421)
Q Consensus 106 i~~dl~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIH 185 (421)
+.++++.|++.|.+.+....| ++++|++..||||+||.|+++++++++ .. ..+.+.++|+++||||+|||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~gGKrlRp~l~l~~~~~~g----~~-~~~~~~~~A~avEliH~asLiH 80 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLYGKMLRVRLSILSFKNRG----VE-IGEDAISSLAALELVHLASLLH 80 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCCCCCHHHHHHHHHHHHHT----CC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCCCCcHHHHHHHHHHHHcC----CC-ChhHHHHHHHHHHHHHHHHHhh
Confidence 567788899999888766556 899999999999999999999988764 21 2357889999999999999999
Q ss_pred cCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHH
Q 014627 186 DDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEY 265 (421)
Q Consensus 186 DDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y 265 (421)
|||||+|++|||+||+|.+||++.|||+||||+++|++++++..+.++++.+++++..++.||+.|+....+. +++++|
T Consensus 81 DDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~y 159 (299)
T 1v4e_A 81 DDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEY 159 (299)
T ss_dssp HHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCHHHH
T ss_pred CCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC-CCHHHH
Confidence 9999999999999999999999999999999999999999998888999999999999999999998776555 899999
Q ss_pred HHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 266 LIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 266 ~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
++|+++|||+||+++|++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+||++||+|||++++
T Consensus 160 ~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~a 235 (299)
T 1v4e_A 160 LRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTA 235 (299)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHH
Confidence 999999999999999999999999877 89999999999999999999999999 99999999999999999999999
Q ss_pred hhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh
Q 014627 346 LEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP 404 (421)
Q Consensus 346 l~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (421)
++..+.+++++.+ +++++++++++++|+++++++.+++|.++|.+.|+.||+..
T Consensus 236 l~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 236 MEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp HHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9986666666654 57899999999999999999999999999999999999864
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.7e-63 Score=499.34 Aligned_cols=300 Identities=19% Similarity=0.274 Sum_probs=233.5
Q ss_pred HHHHHHHHhhC---CCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCc
Q 014627 112 TLNQNLKSIVG---AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV 188 (421)
Q Consensus 112 ~v~~~l~~~~~---~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDI 188 (421)
.|++.+.+... ..+|.+.++++|++..||||+||.|+++++++++ .+ .+.+.++|+++||||+||||||||
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~----~~--~~~~~~~A~avEliH~asLiHDDI 82 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMN----LP--KDQLAIVSQIVELLHNSSLLIDDI 82 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHC----CC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 35555655542 3457799999999999999999999998877653 22 256789999999999999999999
Q ss_pred CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHH-----HHHHHHHHHHHHHhHHHHHhhhccCC---CC
Q 014627 189 LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLE-----VIKLISQVIKDFASGEIKQASSLFDC---DL 260 (421)
Q Consensus 189 iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~-----v~~~~s~~~~~l~~Ge~~q~~~~~~~---~~ 260 (421)
||+|++|||+||+|.+||++.|||+||||+++|++++++..++. +++++++.+..++.||+.|+....+. .+
T Consensus 83 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp HTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred ccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999999999887555 88999999999999999998765443 57
Q ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccH
Q 014627 261 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTA 340 (421)
Q Consensus 261 t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~Tl 340 (421)
++++|++|+++|||+||+++|++|++++|.++ ..+.+++||.++|+||||+||++|++++++.+|||+|+||++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 99999999999999999999999999999887 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhChH---------HHHHHHhhcCCcccHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHH-----hccCCCCh-
Q 014627 341 PVIFALEKEPK---------LREIIESEFCETGSLDEAIKLVK-TSGGIEEAQELAKEKANLAIHN-----LHCLPRSP- 404 (421)
Q Consensus 341 P~l~al~~~~~---------~~~~l~~~~~~~~~~~~i~~li~-~~g~i~~a~~~a~~~~~~A~~~-----L~~lp~~~- 404 (421)
|++++++..+. +..++.+...+++..++++++++ ++|+++++++.+++|.++|++. |+.+|+++
T Consensus 242 p~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~ 321 (340)
T 2e8v_A 242 PIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSD 321 (340)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCcc
Confidence 99999997332 44455443333333448999999 9999999999999999999999 99999998
Q ss_pred ----HHHHHHHHHHHHhc
Q 014627 405 ----FRVALEDMVMFNLE 418 (421)
Q Consensus 405 ----~r~~L~~l~~~~~~ 418 (421)
+|+.|..+++++.+
T Consensus 322 ~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 322 TATNLHDELLYIIDHLSE 339 (340)
T ss_dssp ------------------
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 99999999999865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.9e-62 Score=484.10 Aligned_cols=291 Identities=21% Similarity=0.293 Sum_probs=248.6
Q ss_pred HHHhhCCCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCC
Q 014627 117 LKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRR 196 (421)
Q Consensus 117 l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RR 196 (421)
+++.+.+.+|.+.++++|++..||||+||.|++++++++ |.+ .+.+.++|+++||||+||||||||||+|++||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~----~~~--~~~~~~~A~avEliH~asLiHDDi~D~s~~RR 75 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWL----KVP--EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRR 75 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHH----CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred cccccCCCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHHHHHHccccCCCCCCC
Confidence 445666667889999999999999999999999887764 322 35678999999999999999999999999999
Q ss_pred CCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccC-CCCCHHHHHHHHhcccHH
Q 014627 197 GQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD-CDLELEEYLIKSYYKTAS 275 (421)
Q Consensus 197 G~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~-~~~t~~~Y~~~i~~KTa~ 275 (421)
|+||+|.+||++.|||+||||+++|++.+++..++++++++++.+..++.||+.|+....+ ..+++++|++|+++|||+
T Consensus 76 G~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~ 155 (301)
T 2q80_A 76 GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGG 155 (301)
T ss_dssp TEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHH
Confidence 9999999999999999999999999999999877788899999999999999999876443 367999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhCh---HH
Q 014627 276 LIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEP---KL 352 (421)
Q Consensus 276 Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~---~~ 352 (421)
||.++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++.+| ++
T Consensus 156 L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l 231 (301)
T 2q80_A 156 LFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQV 231 (301)
T ss_dssp HHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHH
Confidence 99999999999999774 489999999999999999999999999999999999999999999999999744 45
Q ss_pred HHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014627 353 REIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 420 (421)
Q Consensus 353 ~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R~ 420 (421)
.+++.+...+++..++++++++++|+++++++.+++|.++|++.|+.+|.++. |..+++++..|.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~~---L~~l~~~l~~~~ 296 (301)
T 2q80_A 232 QNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPE---LVALVKHLSKMF 296 (301)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHh
Confidence 66665543332333449999999999999999999999999999999998874 888999988775
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=9.8e-62 Score=481.92 Aligned_cols=286 Identities=30% Similarity=0.411 Sum_probs=236.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHH
Q 014627 95 SPISLANIFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRL 171 (421)
Q Consensus 95 ~~~~~~~l~~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~l 171 (421)
++.++.+++..+.++++.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++
T Consensus 26 ~~~~~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~ 99 (324)
T 3uca_A 26 KRKTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYK----SD--YKKILTP 99 (324)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTC----SC--GGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHH
Confidence 344566677788899999999999999865 78899999999999999999999999887653 32 3577899
Q ss_pred HHHHHHHHHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c----HHHHHHHHHHH--
Q 014627 172 AEIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI-- 241 (421)
Q Consensus 172 A~avEllH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~----~~v~~~~s~~~-- 241 (421)
|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. + .++++.++++.
T Consensus 100 A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~ 179 (324)
T 3uca_A 100 AMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGS 179 (324)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhH
Confidence 99999999999999999 99999999999999999999999999999999999998753 1 35667777765
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014627 242 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 321 (421)
Q Consensus 242 ~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d 321 (421)
..++.||+.|+....+..+++++|+.|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 56899999998776665789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCC
Q 014627 322 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 401 (421)
Q Consensus 322 ~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 401 (421)
++.+|||+|+|+++||+|||++++ ++++++.++++.++|++.|+.||
T Consensus 260 ~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 260 AKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp -----------------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999994 56899999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014627 402 RSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 402 ~~~~r~~L~~l~~~~~~R~~ 421 (421)
.+ ++.|..+++|+++|..
T Consensus 307 ~~--~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 307 GN--TEPLKVLTMKLLERKF 324 (324)
T ss_dssp SC--CHHHHHHHHHHHHCCC
T ss_pred Cc--HHHHHHHHHHHHhccC
Confidence 75 4899999999999963
No 18
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.6e-61 Score=479.04 Aligned_cols=279 Identities=25% Similarity=0.330 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHH
Q 014627 101 NIFEVVAEDLQTLNQNLKSIVGA--------ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLA 172 (421)
Q Consensus 101 ~l~~~i~~dl~~v~~~l~~~~~~--------~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA 172 (421)
++.+.+.++++.|++.|.+.+.. .++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|
T Consensus 38 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A 111 (335)
T 2h8o_A 38 NFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLG----GD--AEAGLHVG 111 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTT----CC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHH
Confidence 34456677788999999998866 467899999999999999999999999888754 22 35678999
Q ss_pred HHHHHHHHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc--C-----cHHHHHHHHHHH--
Q 014627 173 EIIEMIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL--E-----NLEVIKLISQVI-- 241 (421)
Q Consensus 173 ~avEllH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~--~-----~~~v~~~~s~~~-- 241 (421)
+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++. . ..++++.+++++
T Consensus 112 ~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~ 191 (335)
T 2h8o_A 112 AALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGI 191 (335)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhh
Confidence 9999999999999999 9999999999999999999999999999999999999986 1 235777888888
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014627 242 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 321 (421)
Q Consensus 242 ~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d 321 (421)
..++.||+.|+....+ .+++++|++|+++|||+||+++|++|++++|++++.++.+++||.++|+||||+||++|++++
T Consensus 192 ~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 270 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTAD 270 (335)
T ss_dssp TSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999999876555 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCC
Q 014627 322 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 401 (421)
Q Consensus 322 ~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 401 (421)
++.+|||+|+|+++||.|||++++ ++++++.+++|.++|++.|+.||
T Consensus 271 ~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 271 AATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp ---------------CCCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999994 56899999999999999999998
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014627 402 RSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 402 ~~~~r~~L~~l~~~~~~R~~ 421 (421)
. .++.|..|++|+++|..
T Consensus 318 ~--~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 318 E--KAAILIAAARFIAERKS 335 (335)
T ss_dssp G--GGHHHHHHHHHHHC---
T ss_pred h--hHHHHHHHHHHHHhccC
Confidence 5 68899999999999963
No 19
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=9.3e-61 Score=483.51 Aligned_cols=293 Identities=17% Similarity=0.151 Sum_probs=258.8
Q ss_pred hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccc-cHHHHH----HHHHHHHHHHHHhhhcCcCCCCCCCCCCch
Q 014627 126 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKEL-TTKHRR----LAEIIEMIHTASLIHDDVLDESDMRRGQET 200 (421)
Q Consensus 126 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~-~~~~~~----lA~avEllH~AsLIHDDIiD~s~~RRG~pt 200 (421)
+.+.++.+|.+ .||||+||.|+++++++++........ .+.+++ +|+++||||+||||||||||+|++|||+||
T Consensus 34 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt 112 (362)
T 1yhl_A 34 RYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPC 112 (362)
T ss_dssp HHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEEC
T ss_pred HHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Confidence 45677777766 799999999999999987531000011 012344 778999999999999999999999999999
Q ss_pred hhhhcCH--HHHHHHhHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhHHHHHhhhc-----------c--CC--
Q 014627 201 VHQLYGT--RVAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSL-----------F--DC-- 258 (421)
Q Consensus 201 ~h~~~G~--~~AIl~GD~Ll~~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Ge~~q~~~~-----------~--~~-- 258 (421)
+|.+||+ +.||++||||++.+++++++. .+.++++++++++..++.||+.|+... . +.
T Consensus 113 ~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~ 192 (362)
T 1yhl_A 113 WYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDF 192 (362)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSC
T ss_pred HHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Confidence 9999999 589999999999999999885 346899999999999999999998765 2 22
Q ss_pred -CCCHHHHHHHHhcccHHH-HHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccC
Q 014627 259 -DLELEEYLIKSYYKTASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAK 335 (421)
Q Consensus 259 -~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~e 335 (421)
.+++++|++|+++|||+| |+++|++|++++| ++++..+.+++||.+||+||||+||++|++++++.+|| .|+||++
T Consensus 193 ~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~e 271 (362)
T 1yhl_A 193 AEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIED 271 (362)
T ss_dssp TTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTT
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhc
Confidence 479999999999999999 9999999999999 88888999999999999999999999999999999999 9999999
Q ss_pred CcccHHHHHHhhh-ChHHHHHHHhhcCC--cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHH--HHHH
Q 014627 336 GNLTAPVIFALEK-EPKLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFR--VALE 410 (421)
Q Consensus 336 gk~TlP~l~al~~-~~~~~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r--~~L~ 410 (421)
||+|||++++++. +++.++.+.+.++. ++++++++++++++|+++++++++++|.++|++.|+.+|+++.+ +.|.
T Consensus 272 gK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~ 351 (362)
T 1yhl_A 272 AKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVA 351 (362)
T ss_dssp TCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 9999999999998 56777777777654 46788999999999999999999999999999999999999888 9999
Q ss_pred HHHHHHhccC
Q 014627 411 DMVMFNLERF 420 (421)
Q Consensus 411 ~l~~~~~~R~ 420 (421)
.+++++++|.
T Consensus 352 ~l~~~i~~R~ 361 (362)
T 1yhl_A 352 VVWEKTHKRK 361 (362)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 20
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=9.5e-61 Score=484.74 Aligned_cols=293 Identities=18% Similarity=0.140 Sum_probs=259.0
Q ss_pred hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCC-ccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhh
Q 014627 126 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGL-KELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 204 (421)
Q Consensus 126 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~-~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~ 204 (421)
+.+.++++|.. .||||+||+++++++++++...+. ....+.+.++|+++||||+||||||||||+|++|||+||+|++
T Consensus 64 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~ 142 (374)
T 2qis_A 64 ARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQK 142 (374)
T ss_dssp HHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECGGGS
T ss_pred HHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCccHHHh
Confidence 45777888765 799999999999999876421000 0001146788999999999999999999999999999999999
Q ss_pred cCHH-HHHHHhHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhHHHHHhhhccC--C---CCCHHHHHHHHhccc
Q 014627 205 YGTR-VAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSLFD--C---DLELEEYLIKSYYKT 273 (421)
Q Consensus 205 ~G~~-~AIl~GD~Ll~~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~--~---~~t~~~Y~~~i~~KT 273 (421)
||++ +||++||++++.+|+++++. ...++++++++++..++.||+.|+..... . .+++++|+.|+++||
T Consensus 143 ~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KT 222 (374)
T 2qis_A 143 PGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKS 222 (374)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCc
Confidence 9999 99999999999999998864 34688999999999999999999876543 1 379999999999999
Q ss_pred HHH-HHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-Ch
Q 014627 274 ASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EP 350 (421)
Q Consensus 274 a~L-f~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~ 350 (421)
|+| |+++|++|++++| ++++..+.+++||.+||+||||+||++|++++++.+|| .|+||++||+|||++++++. ++
T Consensus 223 a~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~ 301 (374)
T 2qis_A 223 AFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATP 301 (374)
T ss_dssp HHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCH
T ss_pred cHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCH
Confidence 999 9999999999999 99999999999999999999999999999999999999 99999999999999999998 67
Q ss_pred HHHHHHHhhcCC--cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014627 351 KLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 420 (421)
Q Consensus 351 ~~~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R~ 420 (421)
+.++.+.+.++. ++++++++++++++|+.++++..+++|.++|++.|+.+|+++.++.|..+++++++|.
T Consensus 302 ~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~~l~~~i~~R~ 373 (374)
T 2qis_A 302 EQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 373 (374)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHcCc
Confidence 788888877764 5678999999999999999999999999999999999999999999999999999996
No 21
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=6.8e-61 Score=475.90 Aligned_cols=277 Identities=27% Similarity=0.388 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 178 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEll 178 (421)
+.+.+....+.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++|||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A~avEli 82 (324)
T 3ts7_A 9 LSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIG----VA--ADLLDGPACAVEFI 82 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHT----CC--GGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHH
Confidence 34456677889999999988764 67899999999999999999999999888764 22 35678999999999
Q ss_pred HHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c------HHHHHHHHHHH--HHHHh
Q 014627 179 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N------LEVIKLISQVI--KDFAS 246 (421)
Q Consensus 179 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~------~~v~~~~s~~~--~~l~~ 246 (421)
|+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. + .++++.++++. ..|+.
T Consensus 83 H~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~ 162 (324)
T 3ts7_A 83 HVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVG 162 (324)
T ss_dssp HHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999 99999999999999999999999999999999999999864 1 25677777765 67999
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 014627 247 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 325 (421)
Q Consensus 247 Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~ 325 (421)
||+.|+..... .+++++|+.|+++|||+||+++|++|++++| ++++..+.+++||.+||+||||+||++|++++++.+
T Consensus 163 GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~ 241 (324)
T 3ts7_A 163 GQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTL 241 (324)
T ss_dssp HHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred hHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999876554 7899999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChH
Q 014627 326 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPF 405 (421)
Q Consensus 326 GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 405 (421)
|||+|+|+++||+|||+++ +++++++.++++.++|++.|+.||++
T Consensus 242 GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~~~-- 286 (324)
T 3ts7_A 242 GKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMHEAALESLAGFGPE-- 286 (324)
T ss_dssp -----------CCCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHTTTTCCGG--
T ss_pred CCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCcc--
Confidence 9999999999999999999 46789999999999999999999976
Q ss_pred HHHHHHHHHHHhccC
Q 014627 406 RVALEDMVMFNLERF 420 (421)
Q Consensus 406 r~~L~~l~~~~~~R~ 420 (421)
++.|..+++|+++|.
T Consensus 287 ~~~L~~la~~~~~R~ 301 (324)
T 3ts7_A 287 ADLLRELARFIIQRQ 301 (324)
T ss_dssp GHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 789999999999996
No 22
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.4e-60 Score=472.36 Aligned_cols=277 Identities=27% Similarity=0.372 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE--NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 179 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~--~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH 179 (421)
+.+.+....+.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||
T Consensus 5 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g----~~--~~~~~~~A~avEliH 78 (317)
T 4f62_A 5 LKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVG----DI--SSLTDASAAALESIH 78 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHS----CC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHH
Confidence 44456677889999999998765 67899999999999999999999999888764 32 367899999999999
Q ss_pred HHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c----HHHHHHHHHHH--HHHHhHHH
Q 014627 180 TASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI--KDFASGEI 249 (421)
Q Consensus 180 ~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~----~~v~~~~s~~~--~~l~~Ge~ 249 (421)
+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. + .++++.+++++ ..|+.||+
T Consensus 79 ~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~ 158 (317)
T 4f62_A 79 AYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQM 158 (317)
T ss_dssp HHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 999999999 99999999999999999999999999999999999998863 2 24566677665 36899999
Q ss_pred HHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCC
Q 014627 250 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 328 (421)
Q Consensus 250 ~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~ 328 (421)
.|+.... ..+++++|+.|+++|||+||+++|++|++++| ++++..+.+++||.+||+||||+||++|++++++.+|||
T Consensus 159 lDl~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~ 237 (317)
T 4f62_A 159 IDLSSEN-KNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKT 237 (317)
T ss_dssp HHHHTSS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHhccC-CCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCC
Confidence 9887653 45899999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014627 329 AASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 408 (421)
Q Consensus 329 ~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~ 408 (421)
+|+|+++||+|||++++ ++++++.++++.++|++.|+.||+ .++.
T Consensus 238 ~g~Dl~egK~T~p~l~g---------------------------------le~a~~~a~~~~~~A~~~L~~l~~--~~~~ 282 (317)
T 4f62_A 238 QFSDAEANKATYPKLLG---------------------------------LDGAKALVVRLHEQAIAQISEFGD--KSQP 282 (317)
T ss_dssp -------CCCCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHGGGGG--GGHH
T ss_pred cchHHhcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCch--hHHH
Confidence 99999999999999994 568999999999999999999986 5899
Q ss_pred HHHHHHHHhccC
Q 014627 409 LEDMVMFNLERF 420 (421)
Q Consensus 409 L~~l~~~~~~R~ 420 (421)
|..+++|+++|.
T Consensus 283 L~~l~~~~~~R~ 294 (317)
T 4f62_A 283 LTDLANYIIDRN 294 (317)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhc
Confidence 999999999995
No 23
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.2e-60 Score=470.99 Aligned_cols=276 Identities=29% Similarity=0.401 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHH
Q 014627 103 FEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 179 (421)
Q Consensus 103 ~~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH 179 (421)
.+.+....+.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~aiEliH 77 (304)
T 3lsn_A 4 TAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALG----GK--PEQANGAACAVELIH 77 (304)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTT----CC--GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHH
Confidence 3456677889999999998875 47899999999999999999999999888754 32 256789999999999
Q ss_pred HHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC----c----HHHHHHHHHHHH--HHHhH
Q 014627 180 TASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE----N----LEVIKLISQVIK--DFASG 247 (421)
Q Consensus 180 ~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~----~----~~v~~~~s~~~~--~l~~G 247 (421)
+|||||||| ||+|++|||+||+|++||+.+|||+||||+++||+++++.. + .++++.+++++. .|+.|
T Consensus 78 ~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~G 157 (304)
T 3lsn_A 78 AYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGG 157 (304)
T ss_dssp HHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHh
Confidence 999999999 99999999999999999999999999999999999999864 2 246777777774 49999
Q ss_pred HHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhC
Q 014627 248 EIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGV-DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLG 326 (421)
Q Consensus 248 e~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~-~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~G 326 (421)
|+.|+....+ .+++++|+.|+++|||+||+++|++|++++|+ +++..+.+++||.+||+||||+||++|++++++.+|
T Consensus 158 Q~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~G 236 (304)
T 3lsn_A 158 QAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLG 236 (304)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhC
Confidence 9998876543 58999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred CCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHH
Q 014627 327 KPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFR 406 (421)
Q Consensus 327 K~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r 406 (421)
||.|+|+++||+|||+++ +++++++.++++.++|++.|..||+ .+
T Consensus 237 K~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~--~~ 281 (304)
T 3lsn_A 237 KRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQALHALRPFDA--AA 281 (304)
T ss_dssp -----------CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred CCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCch--hH
Confidence 999999999999999999 4678999999999999999999996 48
Q ss_pred HHHHHHHHHHhccC
Q 014627 407 VALEDMVMFNLERF 420 (421)
Q Consensus 407 ~~L~~l~~~~~~R~ 420 (421)
+.|..|++|+++|.
T Consensus 282 ~~L~~l~~~~~~R~ 295 (304)
T 3lsn_A 282 EPLRELARYIVERR 295 (304)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999995
No 24
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=6.1e-61 Score=473.14 Aligned_cols=273 Identities=27% Similarity=0.372 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHhhCC--CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhc
Q 014627 109 DLQTLNQNLKSIVGA--ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHD 186 (421)
Q Consensus 109 dl~~v~~~l~~~~~~--~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHD 186 (421)
..+.|++.|.+.+.. .++.+.++++|.+..||||+||.|+++++++++ .+ .+.++++|+++||||+||||||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLiHD 82 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLN----TE--YELGMKSAIALEMIHTYSLIHD 82 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTT----SC--GGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHHhC
Confidence 345688888887765 467799999999999999999999999988754 22 2456889999999999999999
Q ss_pred Cc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc------CcHHHHHHHHHHH--HHHHhHHHHHhhhcc
Q 014627 187 DV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL------ENLEVIKLISQVI--KDFASGEIKQASSLF 256 (421)
Q Consensus 187 DI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~------~~~~v~~~~s~~~--~~l~~Ge~~q~~~~~ 256 (421)
|| ||+|++|||+||+|.+||+++|||+||||+++||+++++. ...++++.+++++ ..++.||+.|+....
T Consensus 83 DiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~ 162 (301)
T 1rtr_A 83 DLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEG 162 (301)
T ss_dssp HSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred CchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccC
Confidence 99 9999999999999999999999999999999999999987 2345777888887 779999999987654
Q ss_pred CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCC
Q 014627 257 DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 336 (421)
Q Consensus 257 ~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~eg 336 (421)
+ .+++++|++|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+|||.|+|+++|
T Consensus 163 ~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~g 241 (301)
T 1rtr_A 163 Q-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENN 241 (301)
T ss_dssp S-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred C-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcC
Confidence 4 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 014627 337 NLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFN 416 (421)
Q Consensus 337 k~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~ 416 (421)
|+|||+++++ +++++.+++|.++|++.|+.||+++.++.|..+++|+
T Consensus 242 K~T~p~l~al---------------------------------~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i 288 (301)
T 1rtr_A 242 KSTYVSLLGK---------------------------------DGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLF 288 (301)
T ss_dssp -CCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHH
T ss_pred CCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999964 4789999999999999999999888899999999999
Q ss_pred hccCC
Q 014627 417 LERFV 421 (421)
Q Consensus 417 ~~R~~ 421 (421)
++|..
T Consensus 289 ~~R~~ 293 (301)
T 1rtr_A 289 YSRDH 293 (301)
T ss_dssp HCC--
T ss_pred HHhhc
Confidence 99963
No 25
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=5.6e-61 Score=473.24 Aligned_cols=280 Identities=27% Similarity=0.363 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 178 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEll 178 (421)
+.+.+.++++.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++|||
T Consensus 3 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g----~~--~~~~~~~A~avEli 76 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFG----VS--TNTLDAPAAAVECI 76 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT----CC--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHH
Confidence 34456677889999999988764 67899999999999999999999999888754 22 35778999999999
Q ss_pred HHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc-----C---cHHHHHHHHHHH--HHHHh
Q 014627 179 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL-----E---NLEVIKLISQVI--KDFAS 246 (421)
Q Consensus 179 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~-----~---~~~v~~~~s~~~--~~l~~ 246 (421)
|+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++. + ..++++.+++++ ..++.
T Consensus 77 H~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 156 (299)
T 1rqj_A 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCG 156 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999 9999999999999999999999999999999999999985 1 135667777776 68899
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 014627 247 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIF-SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQL 325 (421)
Q Consensus 247 Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gail-ag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~ 325 (421)
||+.|+....+ .+++++|+.|+++|||+||+++|++|+++ +|++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 157 GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~ 235 (299)
T 1rqj_A 157 GQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATL 235 (299)
T ss_dssp HHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999876554 78999999999999999999999999999 99889999999999999999999999999999999999
Q ss_pred CCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCC-Ch
Q 014627 326 GKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SP 404 (421)
Q Consensus 326 GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~ 404 (421)
|||.|+|+++||+|||+++++ +++++.+++|.++|++.|+.+|. ++
T Consensus 236 GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~A~~~L~~l~~~~~ 282 (299)
T 1rqj_A 236 GKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDARQSLKQLAEQSL 282 (299)
T ss_dssp SSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999964 46889999999999999999987 44
Q ss_pred HHHHHHHHHHHHhccCC
Q 014627 405 FRVALEDMVMFNLERFV 421 (421)
Q Consensus 405 ~r~~L~~l~~~~~~R~~ 421 (421)
.++.|..|++|+++|..
T Consensus 283 ~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 283 DTSALEALADYIIQRNK 299 (299)
T ss_dssp CCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 78999999999999963
No 26
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=6.1e-60 Score=477.72 Aligned_cols=294 Identities=18% Similarity=0.143 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCcc-ccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhh
Q 014627 126 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKE-LTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQL 204 (421)
Q Consensus 126 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~-~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~ 204 (421)
+.+.++++|.+ .||||+||.++++++++++.....+. ..+.+.++|+++||||+||||||||||+|++|||+||+|.+
T Consensus 57 ~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~ 135 (367)
T 1uby_A 57 ARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKK 135 (367)
T ss_dssp HHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGS
T ss_pred HHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhc
Confidence 35778888877 79999999999999987642100001 11247889999999999999999999999999999999999
Q ss_pred cCHH-HHHHHhHHHHHHHHHHHHcc-----CcHHHHHHHHHHHHHHHhHHHHHhhhccCC-----CCCHHHHHHHHhccc
Q 014627 205 YGTR-VAVLAGDFMFAQSSWYLANL-----ENLEVIKLISQVIKDFASGEIKQASSLFDC-----DLELEEYLIKSYYKT 273 (421)
Q Consensus 205 ~G~~-~AIl~GD~Ll~~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~-----~~t~~~Y~~~i~~KT 273 (421)
||++ .+|+.||++++.+|+++++. ...++++++++++..++.||+.|+...... .+++++|+.|+++||
T Consensus 136 ~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KT 215 (367)
T 1uby_A 136 EGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKT 215 (367)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCc
Confidence 9999 89999999999999999875 346889999999999999999998765432 579999999999999
Q ss_pred HHH-HHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-Ch
Q 014627 274 ASL-IAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EP 350 (421)
Q Consensus 274 a~L-f~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~ 350 (421)
|+| |+++|++|++++| ++++..+.+++||.+||+||||+||++|++++++.+|| .|+||++||+|||++++++. ++
T Consensus 216 a~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~ 294 (367)
T 1uby_A 216 AFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTP 294 (367)
T ss_dssp HHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCH
Confidence 999 9999999999999 89999999999999999999999999999999999999 99999999999999999998 77
Q ss_pred HHHHHHHhhcCC--cccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccCC
Q 014627 351 KLREIIESEFCE--TGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERFV 421 (421)
Q Consensus 351 ~~~~~l~~~~~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R~~ 421 (421)
+.++.+.+.++. ++++++++++++++|+.++++.++++|.++|++.|+.+|+++.++.|..+++++++|..
T Consensus 295 ~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 295 EQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 888888887764 45788999999999988888899999999999999999999999999999999999974
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2e-60 Score=468.90 Aligned_cols=273 Identities=27% Similarity=0.385 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHhhCC--CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhh
Q 014627 108 EDLQTLNQNLKSIVGA--ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIH 185 (421)
Q Consensus 108 ~dl~~v~~~l~~~~~~--~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIH 185 (421)
.+++.|++.|.+.+.. .+|.+.++++|.+..||||+||.|+++++++++ .+ ..+++.++|+++||||+|||||
T Consensus 16 ~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~-~~~~~~~~A~avEliH~asLIH 90 (302)
T 3p8l_A 16 QHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQ----KE-METQDYQVAASLEMIHTYSLIH 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT----CC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888877764 368899999999999999999999999888764 32 2237889999999999999999
Q ss_pred cCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c---HHHHHHHHHHH--HHHHhHHHHHhhhcc
Q 014627 186 DDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N---LEVIKLISQVI--KDFASGEIKQASSLF 256 (421)
Q Consensus 186 DDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~---~~v~~~~s~~~--~~l~~Ge~~q~~~~~ 256 (421)
||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. . .++++.+++++ ..|+.||+.|+....
T Consensus 91 DDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~ 170 (302)
T 3p8l_A 91 DDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEK 170 (302)
T ss_dssp HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred CCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccC
Confidence 999 99999999999999999999999999999999999999853 1 25667777776 678999999876543
Q ss_pred CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCC
Q 014627 257 DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 336 (421)
Q Consensus 257 ~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~eg 336 (421)
..+++++|+.|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+|||.|+|+++|
T Consensus 171 -~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~eg 249 (302)
T 3p8l_A 171 -VSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN 249 (302)
T ss_dssp -SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred -CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCC---ChHHHHHHHHH
Q 014627 337 NLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR---SPFRVALEDMV 413 (421)
Q Consensus 337 k~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~---~~~r~~L~~l~ 413 (421)
|+|||++++ ++.+++.++++.++|++.|..||+ ++.++.|..|+
T Consensus 250 K~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~ 296 (302)
T 3p8l_A 250 KSTYPALLG---------------------------------IAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLL 296 (302)
T ss_dssp -CCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred CCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHH
Confidence 999999994 668999999999999999999986 77789999999
Q ss_pred HHHhcc
Q 014627 414 MFNLER 419 (421)
Q Consensus 414 ~~~~~R 419 (421)
+|+++|
T Consensus 297 ~~~~~R 302 (302)
T 3p8l_A 297 TQLQLR 302 (302)
T ss_dssp HHTSCC
T ss_pred HHHhhC
Confidence 999988
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.4e-60 Score=470.33 Aligned_cols=275 Identities=27% Similarity=0.398 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHH
Q 014627 105 VVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 181 (421)
Q Consensus 105 ~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~A 181 (421)
.+...++.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||+|
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~aiEliH~a 85 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLG----CE--LSDLDTPASAVECIHAY 85 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTT----CC--GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHH
Confidence 34566778888888888653 56799999999999999999999998887653 32 35788999999999999
Q ss_pred HhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c------HHHHHHHHHHH--HHHHhHHH
Q 014627 182 SLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N------LEVIKLISQVI--KDFASGEI 249 (421)
Q Consensus 182 sLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~------~~v~~~~s~~~--~~l~~Ge~ 249 (421)
||||||| ||+|++|||+||+|.+||+++|||+||||++++|+++++.. + .++++.+++++ ..++.||.
T Consensus 86 sLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~ 165 (302)
T 3p8r_A 86 SLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQA 165 (302)
T ss_dssp HHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHH
Confidence 9999999 99999999999999999999999999999999999999874 1 24667777765 57899999
Q ss_pred HHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCC
Q 014627 250 KQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG-VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 328 (421)
Q Consensus 250 ~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag-~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~ 328 (421)
.|+... +..+++++|+.|+++|||+||.++|++|++++| ++++..+.+++||++||+||||+||++|++++++.+|||
T Consensus 166 lDl~~~-~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~ 244 (302)
T 3p8r_A 166 LDLAAE-NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKP 244 (302)
T ss_dssp HHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHcc-CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 988765 357899999999999999999999999999999 788888999999999999999999999999999999999
Q ss_pred CcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014627 329 AASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 408 (421)
Q Consensus 329 ~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~ 408 (421)
.|+|+++||+|||++++ ++++++.+++|.++|++.|+.||++ ++.
T Consensus 245 ~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~--~~~ 289 (302)
T 3p8r_A 245 QGSDQELNKSTYPALLG---------------------------------LEGAQQKAHTLLQEALLALEAIPYN--TEH 289 (302)
T ss_dssp --------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTTCSSC--THH
T ss_pred cchHHhcCCchHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCcc--HHH
Confidence 99999999999999995 5689999999999999999999986 789
Q ss_pred HHHHHHHHhccCC
Q 014627 409 LEDMVMFNLERFV 421 (421)
Q Consensus 409 L~~l~~~~~~R~~ 421 (421)
|..|++|+++|..
T Consensus 290 L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 290 LEEFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999973
No 29
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.5e-60 Score=485.49 Aligned_cols=319 Identities=18% Similarity=0.159 Sum_probs=253.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCC-C-----hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHH
Q 014627 97 ISLANIFEVVAEDLQTLNQNLKSIVGAE-N-----PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRR 170 (421)
Q Consensus 97 ~~~~~l~~~i~~dl~~v~~~l~~~~~~~-~-----p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~ 170 (421)
..|.++|+.+.+++.. .+....-.. . +.+.++++|.. .||||+||+|+++++++++.....+...+.+.+
T Consensus 34 ~~f~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~ 109 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLS---HLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAAC 109 (395)
T ss_dssp -CTTTTHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHhhCCCChhhhhhHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3566777776665543 333211111 1 34557777777 999999999999999877521000011246788
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHH--HHHHhHHHHHHHHHHHHcc-C----cHHHHHHHHHHHHH
Q 014627 171 LAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRV--AVLAGDFMFAQSSWYLANL-E----NLEVIKLISQVIKD 243 (421)
Q Consensus 171 lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~--AIl~GD~Ll~~a~~~l~~~-~----~~~v~~~~s~~~~~ 243 (421)
+|++|||||+||||||||||+|++|||+||||++||++. ||+.||+|++.++++++.. . ..++++++++++..
T Consensus 110 lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~ 189 (395)
T 2ihi_A 110 LAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLK 189 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 9999999999999998763 1 26889999999999
Q ss_pred HHhHHHHHhh-h---------------c----cCC----CCCHHHHHHHHhcccHHH-HHHHHHHHHHHcCCChhH--HH
Q 014627 244 FASGEIKQAS-S---------------L----FDC----DLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL--SK 296 (421)
Q Consensus 244 l~~Ge~~q~~-~---------------~----~~~----~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag~~~~~--~~ 296 (421)
++.||..|+. + . ... .+++++|+.|+++|||+| |.++|++|++++|++++. .+
T Consensus 190 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~ 269 (395)
T 2ihi_A 190 TIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYK 269 (395)
T ss_dssp HHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHH
T ss_pred HHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 9999999982 1 1 111 578999999999999999 999999999999999887 89
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcC--CcccHHHHHHHH
Q 014627 297 QMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFC--ETGSLDEAIKLV 373 (421)
Q Consensus 297 ~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~li 373 (421)
.+++||.+||+||||+||++|++++++.+|| .|+||++||+|||++++++. +|+.++.|.+.++ ++++++++++++
T Consensus 270 ~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~ 348 (395)
T 2ihi_A 270 KIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLY 348 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999998 7888888887776 346789999999
Q ss_pred HhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014627 374 KTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 420 (421)
Q Consensus 374 ~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R~ 420 (421)
+++|+++++++.++++.++|++.|+.+|+++.++.|..+++++++|.
T Consensus 349 ~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 349 EQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999984
No 30
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=6e-61 Score=483.41 Aligned_cols=312 Identities=16% Similarity=0.149 Sum_probs=266.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhh-CCCC-----hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHH
Q 014627 96 PISLANIFEVVAEDLQTLNQNLKSIV-GAEN-----PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHR 169 (421)
Q Consensus 96 ~~~~~~l~~~i~~dl~~v~~~l~~~~-~~~~-----p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~ 169 (421)
...|+..|+.+.+++... +.... +... +.+.++.+|.. .||||+||+++++++++++.. ..+..+.+.
T Consensus 25 ~~~f~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~--~~~~~~~~~ 98 (368)
T 2her_A 25 YTDFINYYDKFKVIVYNV---LKKLPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAY--SNIKRDSIY 98 (368)
T ss_dssp CTTGGGTHHHHHHHHHTT---CCCCTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCC--CSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHhCCCCcchhhhHHHHHHHHHHHhh-CCCCccchHHHHHHHHHhCCC--CcccHHHHH
Confidence 456777777776655443 22221 1122 34555555555 999999999999998876421 112346788
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHH---HHHHHHHHcc-C---cHHHHHHHHHHHH
Q 014627 170 RLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMF---AQSSWYLANL-E---NLEVIKLISQVIK 242 (421)
Q Consensus 170 ~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll---~~a~~~l~~~-~---~~~v~~~~s~~~~ 242 (421)
++|+++||||+||||||||||+|++|||+||||.+||+.+|||+||+|+ +++++++++. . ..++++++++++.
T Consensus 99 ~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 2her_A 99 LLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIF 178 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 8889888763 2 2478899999999
Q ss_pred HHHhHHHHHhhhccCC-CCCH-HHHHHHHhcccHHH-HHHHHHHHHHHcCCChhH--HHHHHHHHHHHHHHHHHHHhhhh
Q 014627 243 DFASGEIKQASSLFDC-DLEL-EEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL--SKQMYEYGRNLGLSFQIVDDILD 317 (421)
Q Consensus 243 ~l~~Ge~~q~~~~~~~-~~t~-~~Y~~~i~~KTa~L-f~~a~~~gailag~~~~~--~~~l~~~G~~lG~afQI~DDllD 317 (421)
.++.||+.|+...... ..+. ++|+.|+++|||+| |+++|++|++++|++++. .+.+++||.+||+||||+||++|
T Consensus 179 ~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 258 (368)
T 2her_A 179 FTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp HHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765432 3344 99999999999999 999999999999999887 89999999999999999999999
Q ss_pred cccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Q 014627 318 FTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHN 396 (421)
Q Consensus 318 ~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 396 (421)
++ .+|| .|+||++||+|||++++++. +|+.++.|.+.++.++ ++++++++++|+++++++++++|.++|++.
T Consensus 259 ~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~ 331 (368)
T 2her_A 259 YL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKL 331 (368)
T ss_dssp HH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 98 6899 99999999999999999998 7889999988887765 999999999999999999999999999999
Q ss_pred hccCCCChHHHHHHHHHHHHhccC
Q 014627 397 LHCLPRSPFRVALEDMVMFNLERF 420 (421)
Q Consensus 397 L~~lp~~~~r~~L~~l~~~~~~R~ 420 (421)
|+.+|.++.|+.|..+++++.+++
T Consensus 332 L~~lp~~~~k~~L~~l~~~i~~~~ 355 (368)
T 2her_A 332 VKDITDDSLQKVFIHLIHQISELI 355 (368)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 31
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2e-59 Score=478.58 Aligned_cols=316 Identities=18% Similarity=0.161 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHH
Q 014627 99 LANIFEVVAEDLQTLNQNLKSIVGAENP------VLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLA 172 (421)
Q Consensus 99 ~~~l~~~i~~dl~~v~~~l~~~~~~~~p------~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA 172 (421)
|.++|+ +-.+.+.+.+.+......| .+.....|.+ .||||+||+|+++++++++.........+.+.++|
T Consensus 36 f~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A 111 (395)
T 3mav_A 36 FRNMYD---KYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLA 111 (395)
T ss_dssp HHHHHH---HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 444444 3344566666554322221 2223344444 79999999999999998753111112235678899
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHH--HHHHHHHcc-----CcHHHHHHHHHHHHHHH
Q 014627 173 EIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFA--QSSWYLANL-----ENLEVIKLISQVIKDFA 245 (421)
Q Consensus 173 ~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~--~a~~~l~~~-----~~~~v~~~~s~~~~~l~ 245 (421)
++|||||+||||||||||+|++|||+||+|.+||+++||++||+|+. .++.++... ...+++++++++...++
T Consensus 112 ~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (395)
T 3mav_A 112 WCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTI 191 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999774 456665542 23578999999999999
Q ss_pred hHHHHHhhhcc------------------------CCCCCHHHHHHHHhcccHHH-HHHHHHHHHHHcCCC--hhHHHHH
Q 014627 246 SGEIKQASSLF------------------------DCDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVD--GSLSKQM 298 (421)
Q Consensus 246 ~Ge~~q~~~~~------------------------~~~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag~~--~~~~~~l 298 (421)
.||..|+.... ...+++++|++|+++|||+| |.++|.+|++++|++ +...+.+
T Consensus 192 ~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l 271 (395)
T 3mav_A 192 IGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKI 271 (395)
T ss_dssp HHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 99998864321 12468999999999999999 899999999999874 4567899
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHHHHHhhcCC--cccHHHHHHHHHh
Q 014627 299 YEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLREIIESEFCE--TGSLDEAIKLVKT 375 (421)
Q Consensus 299 ~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~~~~~~l~~~~~~--~~~~~~i~~li~~ 375 (421)
++||.+||+||||+||++|+++|++.+|| +|+||++||+|||+++|+++ +++.+..|.+.++. ++.++.+++++++
T Consensus 272 ~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~ 350 (395)
T 3mav_A 272 EDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQ 350 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 69999999999999999998 77888888877754 4567889999999
Q ss_pred hCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc
Q 014627 376 SGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 419 (421)
Q Consensus 376 ~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R 419 (421)
+|+.+++++.++++.++|.+.|+.+|.+..+..|..+++.+.+|
T Consensus 351 ~g~~~~~~~~~~~~~~~a~~~l~~l~~~~l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 351 YKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999877777777776666554
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.5e-59 Score=464.67 Aligned_cols=277 Identities=26% Similarity=0.355 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE---NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMI 178 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~---~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEll 178 (421)
+.+.+....+.|++.|.+.+... ++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++|||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~aiEli 82 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLID----VD--QGVLDIIAAALELT 82 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTT----CC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHH
Confidence 44456666778999999888753 67899999999999999999999999888654 32 36789999999999
Q ss_pred HHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC----c----HHHHHHHHHHH--HHHHh
Q 014627 179 HTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE----N----LEVIKLISQVI--KDFAS 246 (421)
Q Consensus 179 H~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~----~----~~v~~~~s~~~--~~l~~ 246 (421)
|+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+++++.. . .++++.+++++ ..|+.
T Consensus 83 H~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~ 162 (313)
T 3lom_A 83 HCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVS 162 (313)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHH
T ss_pred HHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999 99999999999999999999999999999999999998751 1 24566667665 57899
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhh
Q 014627 247 GEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQ 324 (421)
Q Consensus 247 Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag--~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~ 324 (421)
||..|+....+..+++++|+.|+++|||+||+++|++ |+++| ++++..+.+++||.+||+||||+||++|++++++.
T Consensus 163 GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~ 241 (313)
T 3lom_A 163 GQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQI 241 (313)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 9999987665557899999999999999999999999 99999 89999999999999999999999999999999999
Q ss_pred hCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh
Q 014627 325 LGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP 404 (421)
Q Consensus 325 ~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 404 (421)
+|||+|+|+++||+|||+++ +++++++.++++.++|++.|+.||++
T Consensus 242 ~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~- 287 (313)
T 3lom_A 242 LGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQIAMDSLRLFGSK- 287 (313)
T ss_dssp ------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHHHHHTTTTTGGG-
T ss_pred hCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCcc-
Confidence 99999999999999999999 46789999999999999999999975
Q ss_pred HHHHHHHHHHHHhccC
Q 014627 405 FRVALEDMVMFNLERF 420 (421)
Q Consensus 405 ~r~~L~~l~~~~~~R~ 420 (421)
++.|..|++|+++|.
T Consensus 288 -~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 288 -AAALIELTKQLQNRS 302 (313)
T ss_dssp -GHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcc
Confidence 789999999999984
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=8.3e-60 Score=463.71 Aligned_cols=272 Identities=26% Similarity=0.347 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHH
Q 014627 104 EVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTAS 182 (421)
Q Consensus 104 ~~i~~dl~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~As 182 (421)
+.+....+.|++.|.+.+... ++.+.++++|. ..||||+||.|+++++++++ .+ .+.+.++|+++||||+||
T Consensus 5 ~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~as 77 (297)
T 3m0g_A 5 ERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHG----IS--MAQAMPAALAVEALHAYS 77 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTT----CC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHH
Confidence 445566778888888888765 67899999999 89999999999999888654 32 367889999999999999
Q ss_pred hhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c----HHHHHHHHHHH--HHHHhHHHHHh
Q 014627 183 LIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N----LEVIKLISQVI--KDFASGEIKQA 252 (421)
Q Consensus 183 LIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~----~~v~~~~s~~~--~~l~~Ge~~q~ 252 (421)
|||||| ||+|++|||+||+|++||+++|||+||||+++||+++++.. + .++++.+++++ ..++.||..|+
T Consensus 78 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl 157 (297)
T 3m0g_A 78 LVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDI 157 (297)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 999999 99999999999999999999999999999999999998864 1 35778888888 77999999988
Q ss_pred hhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcc
Q 014627 253 SSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAAS 331 (421)
Q Consensus 253 ~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~ 331 (421)
.... ...+++++|+.|+++|||+||+++|++|++++|++++ .+++||.+||+||||+||++|++++++.+|||.|+
T Consensus 158 ~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~ 234 (297)
T 3m0g_A 158 AAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGK 234 (297)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------
T ss_pred HhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 7652 3478999999999999999999999999999998877 89999999999999999999999999999999999
Q ss_pred cccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 014627 332 DLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALED 411 (421)
Q Consensus 332 DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~ 411 (421)
|+++||+|||++++ ++++++.++++.++|++.|..||++. +.|..
T Consensus 235 Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~~~~~~--~~L~~ 279 (297)
T 3m0g_A 235 DAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAALAPYGEAA--STLRA 279 (297)
T ss_dssp ------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHHTGGGGGGG--HHHHH
T ss_pred hhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 99999999999995 45788999999999999999999864 89999
Q ss_pred HHHHHhccC
Q 014627 412 MVMFNLERF 420 (421)
Q Consensus 412 l~~~~~~R~ 420 (421)
+++|+++|.
T Consensus 280 l~~~~~~R~ 288 (297)
T 3m0g_A 280 CARYVIERD 288 (297)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhc
Confidence 999999995
No 34
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=5.5e-60 Score=481.15 Aligned_cols=292 Identities=19% Similarity=0.200 Sum_probs=256.1
Q ss_pred HHHHHHHHHHcCCCccchHHHHHHHHHHHhhh---hCC---c-cccHHHHHHHH----HHHHHHHHHhhhcCcCCCCCCC
Q 014627 127 VLMSAAEQIFGAGGKRLRPALVFLVSRATAEL---VGL---K-ELTTKHRRLAE----IIEMIHTASLIHDDVLDESDMR 195 (421)
Q Consensus 127 ~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~---~g~---~-~~~~~~~~lA~----avEllH~AsLIHDDIiD~s~~R 195 (421)
.+.++++|.+ .||||+||+|+++++++++.. .+. . ...++++++|+ +|||||+||||||||||+|++|
T Consensus 57 ~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~R 135 (390)
T 3dyh_A 57 YLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTR 135 (390)
T ss_dssp HHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCc
Confidence 5788899988 999999999999998876420 000 0 12345666676 7999999999999999999999
Q ss_pred CCCchhhhhcCHHHHHHHhHHHHHHH--HHHHHcc-Cc----HHHHHHHHHHHHHHHhHHHHHhhhcc----------C-
Q 014627 196 RGQETVHQLYGTRVAVLAGDFMFAQS--SWYLANL-EN----LEVIKLISQVIKDFASGEIKQASSLF----------D- 257 (421)
Q Consensus 196 RG~pt~h~~~G~~~AIl~GD~Ll~~a--~~~l~~~-~~----~~v~~~~s~~~~~l~~Ge~~q~~~~~----------~- 257 (421)
||+||||+.||++.||++||+++.++ +++++.. .+ .++++++++++..++.||+.|+...+ .
T Consensus 136 RG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~ 215 (390)
T 3dyh_A 136 RGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQP 215 (390)
T ss_dssp TTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCC
T ss_pred CCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999999999755 6777653 11 47889999999999999999876521 0
Q ss_pred -----CCCCHHHHHHHHhcccHHH-HHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCc
Q 014627 258 -----CDLELEEYLIKSYYKTASL-IAASTKGAAIFSGVDGSL-SKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAA 330 (421)
Q Consensus 258 -----~~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag~~~~~-~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g 330 (421)
..+++++|+.|+++|||+| |.++|++|++++|++++. .+.+++||.+||+||||+||++|+++|++.+|| .|
T Consensus 216 ~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g 294 (390)
T 3dyh_A 216 TTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VG 294 (390)
T ss_dssp CCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CC
T ss_pred cccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-Cc
Confidence 2579999999999999999 999999999999998875 789999999999999999999999999999999 99
Q ss_pred ccccCCcccHHHHHHhhh-ChHHHHHHHhhcC--CcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCCh--H
Q 014627 331 SDLAKGNLTAPVIFALEK-EPKLREIIESEFC--ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSP--F 405 (421)
Q Consensus 331 ~DL~egk~TlP~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~--~ 405 (421)
+||++||+|||+++|++. +|+.++.|.+.++ +++++++++++++++|++++++++++++.++|.+.|+.||+++ .
T Consensus 295 ~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~ 374 (390)
T 3dyh_A 295 TDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGF 374 (390)
T ss_dssp CTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred chhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 999999999999999998 7888888888775 4567899999999999999999999999999999999999877 4
Q ss_pred HHHHHHHHHHHhccC
Q 014627 406 RVALEDMVMFNLERF 420 (421)
Q Consensus 406 r~~L~~l~~~~~~R~ 420 (421)
++.|..|++++++|.
T Consensus 375 ~~~l~~l~~~i~~R~ 389 (390)
T 3dyh_A 375 AASVETLWGKTYKRQ 389 (390)
T ss_dssp HHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999996
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.3e-59 Score=463.88 Aligned_cols=279 Identities=25% Similarity=0.353 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHH--HHHHHHHH
Q 014627 101 NIFEVVAEDLQTLNQNLKSIVGAE--NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKH--RRLAEIIE 176 (421)
Q Consensus 101 ~l~~~i~~dl~~v~~~l~~~~~~~--~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~--~~lA~avE 176 (421)
++.+.+.+.++.|++.|.+.+... +|.+.++++|.+..||||+||.|+++++++++ .+ .+++ .++|+++|
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~~~A~aiE 80 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLG----VT--FVPERHWRPVMALE 80 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT----CC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC----CC--HHHHhHhHHHHHHH
Confidence 445567788888999898887654 68899999999999999999999999888764 22 2356 89999999
Q ss_pred HHHHHHhhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc-----HHHHHHHHHHH--HHHHhH
Q 014627 177 MIHTASLIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN-----LEVIKLISQVI--KDFASG 247 (421)
Q Consensus 177 llH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~-----~~v~~~~s~~~--~~l~~G 247 (421)
|||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+++++... .++++.+++++ ..++.|
T Consensus 81 liH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~G 160 (309)
T 3pde_A 81 LLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAG 160 (309)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHh
Confidence 999999999999 999999999999999999999999999999999999988642 25677788776 579999
Q ss_pred HHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCC
Q 014627 248 EIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 327 (421)
Q Consensus 248 e~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK 327 (421)
|..|+.... ..+++++|+.|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+||
T Consensus 161 Q~lDl~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK 239 (309)
T 3pde_A 161 QAKDIQSEH-VNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGK 239 (309)
T ss_dssp HHHHHHTTT-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCC
Confidence 999876543 3679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCC-hHH
Q 014627 328 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRS-PFR 406 (421)
Q Consensus 328 ~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~-~~r 406 (421)
|+|+|+++||+|||++++ ++.+.+.++++.++|.+.|+.+|.+ +.+
T Consensus 240 ~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~~~~~~~~a~~~l~~~~~~~~~~ 286 (309)
T 3pde_A 240 ATQKDADEAKNTYPGKLG---------------------------------LIGANQALIDTIHSGQAALQGLPTSTQRD 286 (309)
T ss_dssp -----CTTTSSSHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CccchhhcCCccHHHHHH---------------------------------HHHhHHHHHHHHHHHHHHHHHhhhccCHH
Confidence 999999999999999995 4567888899999999999998775 233
Q ss_pred HHHHHHHHHHhccC
Q 014627 407 VALEDMVMFNLERF 420 (421)
Q Consensus 407 ~~L~~l~~~~~~R~ 420 (421)
. |..+++|+++|.
T Consensus 287 ~-L~~l~~~~~~r~ 299 (309)
T 3pde_A 287 D-LAAFFSYFDTER 299 (309)
T ss_dssp H-HHGGGGGSCTTT
T ss_pred H-HHHHHHHHHHhh
Confidence 3 999999999996
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-58 Score=452.92 Aligned_cols=264 Identities=25% Similarity=0.354 Sum_probs=230.6
Q ss_pred HHHHHHHHHhhCC-CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCc-
Q 014627 111 QTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV- 188 (421)
Q Consensus 111 ~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDI- 188 (421)
++|++.|.+.+.. .++.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||+||||||||
T Consensus 16 ~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLIHDDIP 89 (284)
T 2ftz_A 16 EXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLG----VE--EEXLLDVAVAVELFHTASLIHDDLP 89 (284)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHT----CC--HHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----cC--HHHHHHHHHHHHHHHHHHHHhCCch
Confidence 5667777776643 356799999999999999999999999988764 22 356789999999999999999999
Q ss_pred -CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCC-CCCHHHHH
Q 014627 189 -LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDC-DLELEEYL 266 (421)
Q Consensus 189 -iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~-~~t~~~Y~ 266 (421)
||+|++|||+||+|.+||+++|||+||||+++||+++++..+.++++.+++++..++.||+.|+....+. .+++++|+
T Consensus 90 ~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~ 169 (284)
T 2ftz_A 90 PIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVE 169 (284)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred hcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHH
Confidence 9999999999999999999999999999999999999998767899999999999999999998766554 78999999
Q ss_pred HHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHh
Q 014627 267 IKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 267 ~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al 346 (421)
+|+++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|+|++ |+|||++++
T Consensus 170 ~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~- 243 (284)
T 2ftz_A 170 RMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVG- 243 (284)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHC-
T ss_pred HHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHH-
Confidence 999999999999999999999998877 89999999999999999999999999999999999999 999999995
Q ss_pred hhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH-HHHHHHHHhcc
Q 014627 347 EKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA-LEDMVMFNLER 419 (421)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~-L~~l~~~~~~R 419 (421)
++++++.+++|.++|++.|+.||+ +.++. |..+++|+++|
T Consensus 244 --------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 244 --------------------------------IQXAREMADXYYEEVLXGIESEGL-FRTLFLLXELXQMVEER 284 (284)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTC
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHcC
Confidence 557899999999999999999997 67888 99999999987
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=6.6e-59 Score=456.87 Aligned_cols=271 Identities=28% Similarity=0.423 Sum_probs=233.6
Q ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcC
Q 014627 111 QTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVL 189 (421)
Q Consensus 111 ~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIi 189 (421)
..|++.|.+.+... .|.+.++++|.+..||||+||.|+++++++++. + .+.+.++|+++||||+|||||||||
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~----~--~~~~~~~A~avEliH~asLIHDDi~ 85 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSG----S--YSRSLNAALAVEMMHSASLIHDDLL 85 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHS----C--CGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 46666777666543 478999999999999999999999999987652 2 3567899999999999999999999
Q ss_pred CCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHH
Q 014627 190 DESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKS 269 (421)
Q Consensus 190 D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i 269 (421)
|+|++|||+||+|.+||+++|||+||||+++||++++... .++++.+++++..++.||+.|+....+ .+++++|++++
T Consensus 86 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~t~~~y~~~i 163 (295)
T 3ipi_A 86 DQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLEDE-SFGENDYFKCI 163 (295)
T ss_dssp HHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHH
T ss_pred CCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHccCC-CCCHHHHHHHH
Confidence 9999999999999999999999999999999999998864 688999999999999999998765443 47889999999
Q ss_pred hcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhC
Q 014627 270 YYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE 349 (421)
Q Consensus 270 ~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~ 349 (421)
++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++ || |+.+||+|||++++++..
T Consensus 164 ~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~ 237 (295)
T 3ipi_A 164 YKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTS 237 (295)
T ss_dssp HHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSC
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998764 55 678999999999998753
Q ss_pred hHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhccC
Q 014627 350 PKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 420 (421)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~R~ 420 (421)
+ .+++++|++.+++|.++|++.|+.||+++.++.|..+++|++.|.
T Consensus 238 ~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 238 K-------------------------EEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp H-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred c-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 2 135999999999999999999999999999999999999999874
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=6.6e-57 Score=445.46 Aligned_cols=272 Identities=31% Similarity=0.377 Sum_probs=223.1
Q ss_pred HHHHHHHhhCC---CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCc-
Q 014627 113 LNQNLKSIVGA---ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDV- 188 (421)
Q Consensus 113 v~~~l~~~~~~---~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDI- 188 (421)
|++.|.+.+.. .+|.+.++++|.+..||||+||.|+++++++++.....++..+.+.++|++|||||+||||||||
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp 97 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLP 97 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 88888888753 46789999999999999999999999998876421000011157889999999999999999999
Q ss_pred -CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHc--cCcH---HHHHHHHHH--HHHHHhHHHHHhhhccCCCC
Q 014627 189 -LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN--LENL---EVIKLISQV--IKDFASGEIKQASSLFDCDL 260 (421)
Q Consensus 189 -iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~--~~~~---~v~~~~s~~--~~~l~~Ge~~q~~~~~~~~~ 260 (421)
||+|++|||+||+|++||+..|||+||+|+++||+++++ .++. ++++.++++ +..|+.||..|+... +..+
T Consensus 98 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~-~~~~ 176 (311)
T 3llw_A 98 CMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFE-NTPL 176 (311)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT-TSCC
T ss_pred ccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc-CCCC
Confidence 999999999999999999999999999999999999988 3332 456677776 467999999887654 4568
Q ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHH-HHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCccc
Q 014627 261 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLS-KQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLT 339 (421)
Q Consensus 261 t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~-~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~T 339 (421)
++++|+.|+++|||+||+++|++|++++|++++.+ +.+++||.+||+||||+||++|+++|++.+|||.|+ ++||+|
T Consensus 177 t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T 254 (311)
T 3llw_A 177 NLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNS 254 (311)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSC
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcch
Confidence 99999999999999999999999999999999988 999999999999999999999999999999999887 999999
Q ss_pred HHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCC-ChH-HHHHHHHHHHHh
Q 014627 340 APVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SPF-RVALEDMVMFNL 417 (421)
Q Consensus 340 lP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~~-r~~L~~l~~~~~ 417 (421)
||++++ ++.+.+.++++.++|++.|..||. +.. .+.|..+++|++
T Consensus 255 ~p~l~~---------------------------------l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~ 301 (311)
T 3llw_A 255 FVNLLG---------------------------------LERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLF 301 (311)
T ss_dssp HHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHH
Confidence 999995 457888899999999999999654 233 578999999999
Q ss_pred ccC
Q 014627 418 ERF 420 (421)
Q Consensus 418 ~R~ 420 (421)
+|+
T Consensus 302 ~r~ 304 (311)
T 3llw_A 302 KGE 304 (311)
T ss_dssp C--
T ss_pred hcc
Confidence 996
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.9e-56 Score=452.57 Aligned_cols=283 Identities=17% Similarity=0.160 Sum_probs=240.8
Q ss_pred HHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCH
Q 014627 128 LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGT 207 (421)
Q Consensus 128 l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~ 207 (421)
+.++++|.+ .||||+||+++++++++++.. .+...+.++.+|++|||||+||||||||||+|++|||+||+|.+||+
T Consensus 60 ~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~--~~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~ 136 (368)
T 2q58_A 60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAY--SNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQ 136 (368)
T ss_dssp HHHHHHHHT-TCSTTTTTC-CHHHHTTTTCC--CSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHH
T ss_pred HHHHHhcCC-CCccchhHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcch
Confidence 556777766 899999999999988876421 11223577899999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHhHHHHHhhhc--cCCCCCHHHHHHHHhcccHHH-H
Q 014627 208 RVAVLAGDFMFAQSSWYLANLEN-------LEVIKLISQVIKDFASGEIKQASSL--FDCDLELEEYLIKSYYKTASL-I 277 (421)
Q Consensus 208 ~~AIl~GD~Ll~~a~~~l~~~~~-------~~v~~~~s~~~~~l~~Ge~~q~~~~--~~~~~t~~~Y~~~i~~KTa~L-f 277 (421)
++|||+||+|++.|++++.+... .++++++++++..++.||..|+... ...+.++++|++|+.+|||.| |
T Consensus 137 ~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~ 216 (368)
T 2q58_A 137 SNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTF 216 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccc
Confidence 99999999999999999877542 3678889999999999999987543 345678899999999999998 7
Q ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhhh-ChHHHH
Q 014627 278 AASTKGAAIFSG--VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK-EPKLRE 354 (421)
Q Consensus 278 ~~a~~~gailag--~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~-~~~~~~ 354 (421)
.+|+.+|++++| ++++..+.+++||.+||+||||+||++|+++ |||.|+||++||+|||+++|++. +++++.
T Consensus 217 ~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~ 291 (368)
T 2q58_A 217 YMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKL 291 (368)
T ss_dssp HHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHH
T ss_pred hHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHH
Confidence 899999999998 5677788999999999999999999999974 89999999999999999999998 788999
Q ss_pred HHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHH----HHHHHHHHHhccC
Q 014627 355 IIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRV----ALEDMVMFNLERF 420 (421)
Q Consensus 355 ~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~----~L~~l~~~~~~R~ 420 (421)
.|.+.++.. .+.+.+++...+..+.+.+.++++++++.+.|+.+|++..++ .|.+|.+++++|+
T Consensus 292 ~L~~~~~~~--~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 292 KISENYGKN--SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHTTTC--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHhCCC--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 998888653 456777788888888889999999999999999999876554 5667777777764
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.8e-55 Score=431.54 Aligned_cols=266 Identities=30% Similarity=0.415 Sum_probs=217.0
Q ss_pred HHHHHHHHHhhC---CCChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcC
Q 014627 111 QTLNQNLKSIVG---AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDD 187 (421)
Q Consensus 111 ~~v~~~l~~~~~---~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDD 187 (421)
+.|++.|.+.+. ..+|.+.++++|.+..||||+||.|+++++++++. ...+.+.++|+++||||+|||||||
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~-----~~~~~~~~~A~aiEliH~aSLIHDD 81 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKP-----ELLNQALDVALALEFIHTYSLIHDD 81 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456677776654 34678999999999999999999999998887642 1236788999999999999999999
Q ss_pred c--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC--c---HHHHHHHHHH--HHHHHhHHHHHhhhccCC
Q 014627 188 V--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE--N---LEVIKLISQV--IKDFASGEIKQASSLFDC 258 (421)
Q Consensus 188 I--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~--~---~~v~~~~s~~--~~~l~~Ge~~q~~~~~~~ 258 (421)
| ||+|++|||+||+|++||+++|||+||||++.||+++++.. . .++++.++++ +..++.||..++.... .
T Consensus 82 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~-~ 160 (291)
T 3npk_A 82 LPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFED-K 160 (291)
T ss_dssp STTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-S
T ss_pred cccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC-C
Confidence 9 99999999999999999999999999999999999998753 2 2567778887 7889999988876532 4
Q ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcc
Q 014627 259 DLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNL 338 (421)
Q Consensus 259 ~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~ 338 (421)
.+++++|..|+++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+|||.+.| +||+
T Consensus 161 ~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~ 238 (291)
T 3npk_A 161 RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKN 238 (291)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------C
T ss_pred CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred cHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhc
Q 014627 339 TAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLE 418 (421)
Q Consensus 339 TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~L~~l~~~~~~ 418 (421)
|||+++++ +.+.+.++++.++|++.|..|+. ...+.|.+++.|-++
T Consensus 239 T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~-~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 239 SFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNE-KLAQMIQNLIIQYLE 284 (291)
T ss_dssp CHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHC-
T ss_pred hHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHh
Confidence 99999964 46777888999999999999974 236789999988764
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.9e-55 Score=431.36 Aligned_cols=261 Identities=20% Similarity=0.291 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHhhCC-CChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhc
Q 014627 108 EDLQTLNQNLKSIVGA-ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHD 186 (421)
Q Consensus 108 ~dl~~v~~~l~~~~~~-~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHD 186 (421)
.-.+.|++.|.+.+.. .+|.+.++++|.+. ||||+||.|+++++++++ .+ .+.+.++|+++||||+||||||
T Consensus 17 ~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~asLIHD 89 (289)
T 2azj_A 17 EAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALG----GD--IKDSYGGALAIEILHSASLALC 89 (289)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTT----CC--GGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344677777777654 35679999999998 999999999999988764 22 2467899999999999999999
Q ss_pred CcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHH
Q 014627 187 DVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYL-ANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEY 265 (421)
Q Consensus 187 DIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l-~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y 265 (421)
||||+|++|||+||+|.+||++.|||+||||+++||+++ ++.+ +.+++.+++++..++.||+.|+.. +++|
T Consensus 90 Di~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-------~~~y 161 (289)
T 2azj_A 90 DIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-------NSDY 161 (289)
T ss_dssp HHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT-------TSCH
T ss_pred CCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh-------HHHH
Confidence 999999999999999999999999999999999999999 8875 478999999999999999888653 6889
Q ss_pred HHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 266 LIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 266 ~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
++++++|||+||+++|++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+ |+++||.|||+++
T Consensus 162 ~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~- 232 (289)
T 2azj_A 162 IRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY- 232 (289)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH-
T ss_pred HHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH-
Confidence 99999999999999999999999 99999999999999999999999999999986 564 8999999999999
Q ss_pred hhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhccC
Q 014627 346 LEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPR-SPFRVALEDMVMFNLERF 420 (421)
Q Consensus 346 l~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~-~~~r~~L~~l~~~~~~R~ 420 (421)
+..+ .+++ .+..+++|.++|++.|+.+|. ++.++.|..+++|+++|.
T Consensus 233 -~~~g---------------~~~a------------~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 233 -REGK---------------LEEY------------VRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp -TTTC---------------HHHH------------HHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred -HcCC---------------HHHH------------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 2211 0111 135899999999999999998 788999999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=2.8e-54 Score=424.23 Aligned_cols=264 Identities=31% Similarity=0.423 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHH
Q 014627 104 EVVAEDLQTLNQNLKSIVGAEN-PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTAS 182 (421)
Q Consensus 104 ~~i~~dl~~v~~~l~~~~~~~~-p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~As 182 (421)
..+.++++.|++.|.+.+.... +.+.++++|.+..||||+||.|+++++++++ .+ .+.+.++|+++||||+||
T Consensus 15 ~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g----~~--~~~~~~~A~avEliH~as 88 (293)
T 2j1p_A 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVG----GE--ESLAMPAACAVEMIHTMS 88 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTT----CC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHH
Confidence 3555678889999999887654 5699999999999999999999999888653 22 356789999999999999
Q ss_pred hhhcCc--CCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC-----cHHHHHHHHH---HH--HHHHhHHHH
Q 014627 183 LIHDDV--LDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE-----NLEVIKLISQ---VI--KDFASGEIK 250 (421)
Q Consensus 183 LIHDDI--iD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-----~~~v~~~~s~---~~--~~l~~Ge~~ 250 (421)
|||||| ||+|++|||+||+|.+||+++|||+||||+++||+++++.. +..+++++.. ++ ..++.||+.
T Consensus 89 LiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~ 168 (293)
T 2j1p_A 89 LIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVV 168 (293)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 999998 99999999999999999999999999999999999998753 3345554444 43 458999998
Q ss_pred HhhhccC--CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCC
Q 014627 251 QASSLFD--CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKP 328 (421)
Q Consensus 251 q~~~~~~--~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~ 328 (421)
|+....+ ..+++++|+.|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 169 Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~------ 242 (293)
T 2j1p_A 169 DISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------ 242 (293)
T ss_dssp TTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc------
Confidence 8765443 35788999999999999999999999999999999999999999999999999999999999774
Q ss_pred CcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014627 329 AASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 408 (421)
Q Consensus 329 ~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~r~~ 408 (421)
|.|+|+++ +++++++.+++|.++|++.|+.+| ++.++.
T Consensus 243 --------K~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~-~~~~~~ 280 (293)
T 2j1p_A 243 --------KLTYPKLM---------------------------------GLEKSREFAEKLNTEARDQLLGFD-SDKVAP 280 (293)
T ss_dssp --------CCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTTTSC-TTTTHH
T ss_pred --------cccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCC-cHHHHH
Confidence 89999998 467899999999999999999998 445889
Q ss_pred HHHHHHHHhccCC
Q 014627 409 LEDMVMFNLERFV 421 (421)
Q Consensus 409 L~~l~~~~~~R~~ 421 (421)
|..+++|+++|..
T Consensus 281 L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 281 LLALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999974
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.1e-50 Score=395.29 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHH
Q 014627 102 IFEVVAEDLQTLNQNLKSIVGAE-NPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 180 (421)
Q Consensus 102 l~~~i~~dl~~v~~~l~~~~~~~-~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~ 180 (421)
+.+.+.++++.|++.|++.+... +|.+.++++|++..||||+||.|+++++++++.. ....+.+.++|+++||||+
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~---~~~~~~~~~~A~aiEliH~ 82 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRR---SIMDPRILEAAAIVELLHV 82 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---CCChHHHHHHHHHHHHHHH
Confidence 44678899999999999999887 8899999999999999999999999998876420 1134678999999999999
Q ss_pred HHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHHHHhhhccCCCC
Q 014627 181 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDL 260 (421)
Q Consensus 181 AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~~q~~~~~~~~~ 260 (421)
||||||||||+|++|||+||+|.+||++.|||+||||+++|++++++..+ ++++++++++..++.||+.|+....+
T Consensus 83 aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~--- 158 (285)
T 4fp4_A 83 VSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERD--- 158 (285)
T ss_dssp HHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhcccc---
Confidence 99999999999999999999999999999999999999999999999865 89999999999999999988754321
Q ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCC
Q 014627 261 ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKG 336 (421)
Q Consensus 261 t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~eg 336 (421)
. |+++|||+||+++|++|++++|++ +..+.+++||+++|+||||+||++|++++++ .||+.|+||+++
T Consensus 159 ---~---~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 159 ---K---AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp ---H---HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred ---c---hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 1 899999999999999999999998 8889999999999999999999999999876 578899999987
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=5.3e-46 Score=361.96 Aligned_cols=198 Identities=15% Similarity=0.209 Sum_probs=173.1
Q ss_pred HHHHHHHHHhhCCCChH-HHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcCcC
Q 014627 111 QTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVL 189 (421)
Q Consensus 111 ~~v~~~l~~~~~~~~p~-l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~avEllH~AsLIHDDIi 189 (421)
+.|++.|.+.+....|. +.++++|++..||||+||.|+++++++++ .+ .+++.++|+++||||+||||||||+
T Consensus 10 ~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A~aiEliH~aSLIHDDI~ 83 (274)
T 3kra_B 10 ADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVG----GD--RSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTT----CC--GGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 35788888888877665 99999999999999999999999888754 32 3577899999999999999999998
Q ss_pred -CCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCcH-------HHHHHHHHHH-----HHHHhHHHHHhhhcc
Q 014627 190 -DESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENL-------EVIKLISQVI-----KDFASGEIKQASSLF 256 (421)
Q Consensus 190 -D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~-------~v~~~~s~~~-----~~l~~Ge~~q~~~~~ 256 (421)
|++++|||+||+|.+||+++|||+||||+++||+++++...+ .+++++.... ..++.||+.|+....
T Consensus 84 ~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~ 163 (274)
T 3kra_B 84 LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD 163 (274)
T ss_dssp CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCT
T ss_pred ccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccC
Confidence 777789999999999999999999999999999999986532 4555554444 457999998876544
Q ss_pred CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 014627 257 DCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDI 315 (421)
Q Consensus 257 ~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDl 315 (421)
+ .+++++|+.|+++|||+||+++|++|++++|++++.++.+++||++||++|||+||.
T Consensus 164 ~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 164 G-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp T-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=4.1e-45 Score=355.62 Aligned_cols=210 Identities=13% Similarity=0.190 Sum_probs=176.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhCCCChH-HHHHHHHHHcCCCccchHHHHHHHHHHHhhhhCCccccHHHHHHHH
Q 014627 95 SPISLANIFEVVAEDLQTLNQNLKSIVGAENPV-LMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE 173 (421)
Q Consensus 95 ~~~~~~~l~~~i~~dl~~v~~~l~~~~~~~~p~-l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lA~ 173 (421)
.|.++.++++.+.. .|++.|.+.+....|. +.++++|.+..||||+||.|+++++++++ .+ .+++.++|+
T Consensus 2 ~~~~~~~~~~~~~~---~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g----~~--~~~~~~~A~ 72 (273)
T 3qkc_B 2 SLTRTQTYRATIES---DIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVG----GD--RSDAMAAAA 72 (273)
T ss_dssp -CCHHHHHHHHHHH---HHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTT----CC--GGGTHHHHH
T ss_pred ChhhHHHHHHHHHH---HHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHH
Confidence 35666777776655 5677888888766664 89999999999999999999999888764 22 357789999
Q ss_pred HHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc------HHHHHHHHHHH-----H
Q 014627 174 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN------LEVIKLISQVI-----K 242 (421)
Q Consensus 174 avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~------~~v~~~~s~~~-----~ 242 (421)
++||||+||||||||+|+|. |||+||+|.+||+++|||+||||+++||+++++... ..+++++.+.. .
T Consensus 73 aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~ 151 (273)
T 3qkc_B 73 AVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSE 151 (273)
T ss_dssp HHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchh
Confidence 99999999999999999999 999999999999999999999999999999987542 35566655544 4
Q ss_pred HHHhHHHHHhhhccCCCCCHHHHHH-HHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhh
Q 014627 243 DFASGEIKQASSLFDCDLELEEYLI-KSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILD 317 (421)
Q Consensus 243 ~l~~Ge~~q~~~~~~~~~t~~~Y~~-~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD 317 (421)
.++.||+.|+.. ....+. +|++ ++++|||+||+++|++|++++|++++.++.+++||.+||+||||+||+.+
T Consensus 152 ~~~~GQ~lDl~~--~~~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 152 GIVEGQYHELGL--NQLNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp THHHHHHHHTTC--CSSCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhc--CCCCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 579999988765 333454 6665 55999999999999999999999999999999999999999999999973
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=93.99 E-value=4 Score=39.05 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=75.6
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014627 242 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 321 (421)
Q Consensus 242 ~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d 321 (421)
..+.+|...++.. ..-.|++++..-+++=.|+...+.+. +++..+++ ...++.++|.|+|+.|=+.|+-
T Consensus 107 ~~li~g~~~Dl~~--~~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~-- 175 (294)
T 4hd1_A 107 LRLIEANRRDQRK--HTYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDID-- 175 (294)
T ss_dssp HHHHHHHHHHHHC--SBCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHH--
T ss_pred HHHHHHHHhcccc--CCCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhch--
Confidence 3455665444332 22357788777666655555544433 33333333 3467899999999999999874
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccCC
Q 014627 322 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 401 (421)
Q Consensus 322 ~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 401 (421)
.|+..|++-+|.-..-+..-...++.... .+ +.+..+ +..-...++.++++|...+..+|
T Consensus 176 ---------eD~~~gR~YlP~~~l~~~gv~~~dl~~~~-~~----~~~~~~------~~~~~~~A~~~~~~a~~~~~~lp 235 (294)
T 4hd1_A 176 ---------RDLALGRIYVPRADLEQFGATLDDIRARR-AT----DGVRRC------IALEVDRAQALFDEGRRLESLVP 235 (294)
T ss_dssp ---------HHHHTTCBCSCHHHHHTTTCCHHHHHTTC-CC----HHHHHH------HHHHHHHHHHHHHHHGGGGGSSC
T ss_pred ---------hhhccCceeCCHHHHHHcCCCHHHHhcCC-CC----HHHHHH------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677888888755433221111222111 11 122222 23345667788888888888887
Q ss_pred CC
Q 014627 402 RS 403 (421)
Q Consensus 402 ~~ 403 (421)
..
T Consensus 236 ~~ 237 (294)
T 4hd1_A 236 PR 237 (294)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=93.73 E-value=0.4 Score=47.34 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 014627 233 VIKLISQVIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIV 312 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~ 312 (421)
+.+++.+.+..|..|...++. ..-.|++++..-+++=.|....+.+.+-.. .+.+.+........+.++|.|+|+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~---~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~-~~~~~~~~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLD---KHVTSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG---CCCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHhCcHHHHHHHHHHhCC-CCCccchhhhHHHHHHHHHHHHHHH
Confidence 445566677777778655543 334588888888887777777776666433 2222222345667899999999999
Q ss_pred HhhhhcccchhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHH
Q 014627 313 DDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANL 392 (421)
Q Consensus 313 DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 392 (421)
|=+.|+- .|+..|++-||.=..-+..-...+ +..+..-+.+.. .+..-...++.++.+
T Consensus 188 NilRDv~-----------eD~~~gR~YlP~e~l~~~g~~~~d-----l~~~~~~~~~~~------~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDYL-----------EDQQGGREFWPQEVWSRYVKKLGD-----FAKPENIDLAVQ------CLNELITNALHHIPD 245 (343)
T ss_dssp HHHHTHH-----------HHHHTTCCCSCHHHHTTTCSSGGG-----GGSGGGHHHHHH------HHHHHHHHHHTTHHH
T ss_pred HHHHHhH-----------HHHhCCCeeCCHHHHHHcCCCHHH-----HhcccCCHHHHH------HHHHHHHHHHHHHHH
Confidence 9888873 566778888887543221100000 111112222322 234455677788888
Q ss_pred HHHHhccCCCC
Q 014627 393 AIHNLHCLPRS 403 (421)
Q Consensus 393 A~~~L~~lp~~ 403 (421)
|...+..+|+.
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888888764
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=92.71 E-value=2.5 Score=40.33 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=80.8
Q ss_pred HHHHHhHHHHHhhhccCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 014627 241 IKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 320 (421)
Q Consensus 241 ~~~l~~Ge~~q~~~~~~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~ 320 (421)
+..+.+|...++.. ..-.|++++..-+++=.|+...+.+.+ + |..+. ......+.++|.|+|+.|=+.|+-
T Consensus 110 ~~~li~g~~~Dl~~--~~~~t~~dL~~Yc~~vAg~VG~l~~~l---~-g~~~~--~~~~~~A~~lG~AlQltNilRDv~- 180 (293)
T 3acx_A 110 FYNLIDTVYKDQHF--TMFETDAELFGYCYGVAGTVGEVLTPI---L-SDHET--HQTYDVARRLGESLQLINILRDVG- 180 (293)
T ss_dssp HHHHHHHHHHHTTC--CCCSSHHHHHHHHHHHTHHHHHHHHHH---H-CSSCC--HHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHcCC--CCCCCHHHHHHHHHHhhHHHHHHHHHH---h-CCCCc--HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455565444321 223478888877777777666665543 2 32221 235679999999999999888873
Q ss_pred chhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcccHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhccC
Q 014627 321 SAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCL 400 (421)
Q Consensus 321 d~~~~GK~~g~DL~egk~TlP~l~al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 400 (421)
.|+..|++-||.=..-+..-...++.... .+ +.+.+ .+..-...++.++.+|...+..+
T Consensus 181 ----------eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~----~~~~~------~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 181 ----------EDFENERIYFSKQRLKQYEVDIAEVYQNG-VN----NHYID------LWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp ----------HHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CC----HHHHH------HHHHHHHHHHHHHHHHHHTGGGS
T ss_pred ----------HHHhCCcEEeCHHHHHHcCCCHHHhcccC-CC----HHHHH------HHHHHHHHHHHHHHHHHHhHHhC
Confidence 56778889998754333221112222211 11 12222 23345577788999999999999
Q ss_pred CCCh
Q 014627 401 PRSP 404 (421)
Q Consensus 401 p~~~ 404 (421)
|...
T Consensus 240 p~~~ 243 (293)
T 3acx_A 240 SIEA 243 (293)
T ss_dssp CTTH
T ss_pred CHHH
Confidence 8753
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=91.60 E-value=6.6 Score=38.83 Aligned_cols=90 Identities=9% Similarity=-0.057 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHH-HHHHHHcCCChhHHH--HHHHHHHHH
Q 014627 230 NLEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAAST-KGAAIFSGVDGSLSK--QMYEYGRNL 305 (421)
Q Consensus 230 ~~~v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~-~~gailag~~~~~~~--~l~~~G~~l 305 (421)
.+.....+.+....++.+-+.+..+.. ...+++++|+.+-..-.|..+..+. ..+. --..+++..+ .+.++-+..
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~ 253 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLS 253 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHH
Confidence 345566677777778888777665543 3468999999876555554433221 1221 0123343332 466677888
Q ss_pred HHHHHHHHhhhhccc
Q 014627 306 GLSFQIVDDILDFTQ 320 (421)
Q Consensus 306 G~afQI~DDllD~~~ 320 (421)
+...-+.||+..|..
T Consensus 254 ~~i~rL~NDi~S~~k 268 (382)
T 3kb9_A 254 QEFAAWYNDLCSLPK 268 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999854
No 50
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=83.06 E-value=3.2 Score=40.13 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc--HH
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN--LE 232 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~--~~ 232 (421)
....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+..+|...|..++. ..
T Consensus 204 ~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~ 283 (304)
T 3lsn_A 204 ELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEP 283 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 444567778888899999999977 6788999999999999999988888888999998888763 22
Q ss_pred HHHHHHHHHHHHHhHH
Q 014627 233 VIKLISQVIKDFASGE 248 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge 248 (421)
+.++....+.+..+|+
T Consensus 284 L~~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 284 LRELARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHhccccc
Confidence 3333434444555553
No 51
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=75.02 E-value=7.7 Score=37.66 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
+....+...-+.|=.|+-|.|||.| .++.+.|++|+-..+|...|--...-+..+|...|..++
T Consensus 202 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 202 EQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445567778888899999999976 467889999999999988888888888888888888775
No 52
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=74.98 E-value=6.8 Score=37.66 Aligned_cols=64 Identities=22% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|.-...-+..+|...|..++
T Consensus 198 ~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 198 TTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445567778888899999999987 578889999998888887777777777788888777764
No 53
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=74.66 E-value=8.2 Score=37.08 Aligned_cols=60 Identities=25% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 170 RLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 170 ~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
.+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-++.+|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566677788889999999987 457788999999999998888888888888888887765
No 54
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=74.24 E-value=11 Score=36.64 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
+....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+..+|...|..++
T Consensus 231 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 231 GDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445567778888899999999965 457788999999999988888888888888888888775
No 55
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=71.25 E-value=92 Score=32.44 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHc-C--CChhHHHHH---HHHHHH
Q 014627 232 EVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFS-G--VDGSLSKQM---YEYGRN 304 (421)
Q Consensus 232 ~v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gaila-g--~~~~~~~~l---~~~G~~ 304 (421)
.++..+.+....++.+-+.++.+.. ...+|+++|+..-.--+|..+.... +.++ | .+++..+.+ .++-+.
T Consensus 366 ~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~---~~~~mg~~lt~e~~e~~~~~p~i~~~ 442 (554)
T 3g4d_A 366 YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAIT---SFVGMGDIVTPETFKWAASDPKIIQA 442 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHH---HHHTSCTTSCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHH---HHHhcCCCCCHHHHHhccccHHHHHH
Confidence 4566677778888888887777654 3468999999876555554432221 1222 3 345555443 367788
Q ss_pred HHHHHHHHHhhhhccc
Q 014627 305 LGLSFQIVDDILDFTQ 320 (421)
Q Consensus 305 lG~afQI~DDllD~~~ 320 (421)
.+...-+.||+..+-.
T Consensus 443 ~~~I~RL~NDI~S~k~ 458 (554)
T 3g4d_A 443 STIICRFMDDVAEHKF 458 (554)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcccchhhh
Confidence 8999999999999853
No 56
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=71.09 E-value=4.4 Score=34.59 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=34.4
Q ss_pred HHHHhHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhHHH
Q 014627 210 AVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEI 249 (421)
Q Consensus 210 AIl~GD~Ll~~a~~~l~~~~~~~v~~~~s~~~~~l~~Ge~ 249 (421)
-||+|||+=++.+.+|++......+..+++++..+.+...
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~ 111 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKS 111 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHH
Confidence 5599999999999999988888889999999988766543
No 57
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=69.47 E-value=12 Score=36.50 Aligned_cols=64 Identities=25% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccCc
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN 230 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~ 230 (421)
....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+..+|...|..++.
T Consensus 210 ~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 210 QFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344567778888899999999965 4577899999999999998888888888888888877763
No 58
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=69.29 E-value=15 Score=35.36 Aligned_cols=63 Identities=25% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL 228 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 228 (421)
+....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+...|...|..+
T Consensus 206 ~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 206 EVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567778888899999999976 35678888888888888777777777777777666655
No 59
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=68.80 E-value=1e+02 Score=31.00 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHcC--CChhHHH--HHHHHHHH
Q 014627 230 NLEVIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFSG--VDGSLSK--QMYEYGRN 304 (421)
Q Consensus 230 ~~~v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag--~~~~~~~--~l~~~G~~ 304 (421)
.....+.+.+.+..++.+-+.+..+.. ...+++++|+.+- ..||.....++ + -...| ..+++.+ .+.++-+.
T Consensus 253 ~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R-~~sg~~p~~~l-~-e~~~g~~lp~~v~~~p~~~~L~~~ 329 (433)
T 3v1v_A 253 TPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMR-QFNNFRPCPTI-T-DTVGGYELPADLHARPDMQRVIAL 329 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH-HHSSSTTTGGG-H-HHHHTCCCCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHhHHHHHHH-H-HHHcCCCCCHHHHhCchHHHHHHH
Confidence 344455566667777777766655432 4467999999864 45543321111 1 11123 2344333 46667788
Q ss_pred HHHHHHHHHhhhhccc
Q 014627 305 LGLSFQIVDDILDFTQ 320 (421)
Q Consensus 305 lG~afQI~DDllD~~~ 320 (421)
.+...-+.||+..|..
T Consensus 330 ~~~i~rL~NDI~Sy~k 345 (433)
T 3v1v_A 330 AGNATTIVNDLYSYTK 345 (433)
T ss_dssp HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhchHHHHHH
Confidence 8888999999999953
No 60
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=66.85 E-value=15 Score=35.87 Aligned_cols=64 Identities=30% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
+....+...-+.+=.|+-|.|||.| .++.+.||+|+=..+|...+.-..+-+..+|...|..++
T Consensus 242 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 242 AERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445567778888999999999976 356788899998888877777777777777777766654
No 61
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=65.94 E-value=16 Score=35.37 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
+....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+..+|...|..++
T Consensus 210 ~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 210 QIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344567778888899999999965 467899999999999999998888888888888887765
No 62
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=64.60 E-value=1e+02 Score=32.06 Aligned_cols=85 Identities=8% Similarity=0.190 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHH-HHHHHHHHcC-CChhHHHHH---HHHHHHHH
Q 014627 233 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAA-STKGAAIFSG-VDGSLSKQM---YEYGRNLG 306 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~-a~~~gailag-~~~~~~~~l---~~~G~~lG 306 (421)
++..+.++...++.+-+.++.+.. ...+|+++|+..-.--+|..+.. .+.++. +. .+++..+-+ -++-+..+
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHH
Confidence 345566677777888777776643 34689999998765544443222 112211 22 345554433 35778888
Q ss_pred HHHHHHHhhhhcc
Q 014627 307 LSFQIVDDILDFT 319 (421)
Q Consensus 307 ~afQI~DDllD~~ 319 (421)
...-+.||+..+.
T Consensus 443 ~i~RL~NDi~S~~ 455 (555)
T 3n0f_A 443 HIFRLCNDLASAS 455 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhccchhhh
Confidence 8899999999985
No 63
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=63.80 E-value=12 Score=36.07 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 168 HRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 168 ~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
...+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--...-+..+|...|..++
T Consensus 211 ~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 211 LPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566677888899999999965 456788999998888888888888888888888887765
No 64
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=60.97 E-value=1.1e+02 Score=28.80 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHhhhccC-CCC-CHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHH--HHHHHHHHH
Q 014627 230 NLEVIKLISQVIKDFASGEIKQASSLFD-CDL-ELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSK--QMYEYGRNL 305 (421)
Q Consensus 230 ~~~v~~~~s~~~~~l~~Ge~~q~~~~~~-~~~-t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~--~l~~~G~~l 305 (421)
.+.....+.+....++.+-..+..+... ..+ ++++|+.+-..-.|..+..+...-+.-...+++..+ .+.++-+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~ 211 (337)
T 1ps1_A 132 TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIA 211 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHH
Confidence 3455566777777777777766554432 357 899998765544444433222211111123333322 455677888
Q ss_pred HHHHHHHHhhhhccc
Q 014627 306 GLSFQIVDDILDFTQ 320 (421)
Q Consensus 306 G~afQI~DDllD~~~ 320 (421)
+...-+.||+..|..
T Consensus 212 ~~i~rL~NDl~S~~k 226 (337)
T 1ps1_A 212 VDVNLLLNDIASLEK 226 (337)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhhHHH
Confidence 899999999999964
No 65
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=58.73 E-value=35 Score=32.60 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCC------CCCCCCCCchhhhhcC--------HHHHHHHhHHHHHHHHHHHHccC
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLD------ESDMRRGQETVHQLYG--------TRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD------~s~~RRG~pt~h~~~G--------~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
....+...-+.+=.|+-|.|||.| +.+.+.|++|+-..|+ ...|.-...-+..+|...|..++
T Consensus 188 ~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp 264 (295)
T 3ipi_A 188 LAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFR 264 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344566677888889999999976 3556788888877776 55555555566666666666665
No 66
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=57.94 E-value=1.3e+02 Score=31.23 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHHc-C-CChhHHHHH---HHHHHHHH
Q 014627 233 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIFS-G-VDGSLSKQM---YEYGRNLG 306 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gaila-g-~~~~~~~~l---~~~G~~lG 306 (421)
++..+.+....++.+-+.++.+.. ...||+++|+..-.--+|.....+.. .++ . .+++..+-+ -++-+..+
T Consensus 363 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~~~ 439 (550)
T 3m00_A 363 IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEASV 439 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHHHh
Confidence 456666777788888777776643 44689999998765555543222211 222 2 345444432 35778889
Q ss_pred HHHHHHHhhhhccc
Q 014627 307 LSFQIVDDILDFTQ 320 (421)
Q Consensus 307 ~afQI~DDllD~~~ 320 (421)
...-+.||+..+..
T Consensus 440 ~I~RL~NDI~S~k~ 453 (550)
T 3m00_A 440 IICRVIDDTATYEV 453 (550)
T ss_dssp HHHHHHHHHHSHHH
T ss_pred hhheeeccchhHHH
Confidence 99999999999853
No 67
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=55.55 E-value=28 Score=33.58 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCC------------CCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHc
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLD------------ESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 227 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 227 (421)
....+...-+.|=.|+-|.|||.| .++.+.||+|+-..+|...|--.-.-++..|...|..
T Consensus 206 ~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 206 QWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344566777888899999999976 4678999999998888888777777777777776665
No 68
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=49.72 E-value=1.1e+02 Score=29.84 Aligned_cols=51 Identities=12% Similarity=-0.055 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 283 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 283 ~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
+++.+.|.+++....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|.
T Consensus 64 l~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 114 (352)
T 3nf2_A 64 LSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVHG 114 (352)
T ss_dssp HHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhcC
Confidence 344445656665556777778888899999999883 678999999877764
No 69
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=48.26 E-value=1.5e+02 Score=28.59 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 283 GAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 283 ~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
+++.+.|.+.+....+...-+.|=.+.-|.||+.|= +|+|.|++|+-..|.
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 113 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLWD 113 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 334444555555566777778888899999999773 577889999877653
No 70
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=46.75 E-value=1.4e+02 Score=28.77 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=29.9
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHhh
Q 014627 287 FSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALE 347 (421)
Q Consensus 287 lag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al~ 347 (421)
..|.+++....+...-+.|=.++=|.||+.|= +|+|.|++|+-..|...
T Consensus 61 ~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 61 LYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFNNK 109 (334)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcChH
Confidence 33555555556677778888899999999773 67799999998887543
No 71
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=45.63 E-value=1.1e+02 Score=29.24 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCC--CCC--------CCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHc
Q 014627 169 RRLAEIIEMIHTASLIHDDVLDE--SDM--------RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 227 (421)
Q Consensus 169 ~~lA~avEllH~AsLIHDDIiD~--s~~--------RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 227 (421)
..+...-+.|=.|+-|.|||.|- ++. +.||+|+-..+|...|--...-++..|...|..
T Consensus 213 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 213 KWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45777788888999999999652 111 778888888888888877778888888888877
No 72
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=43.34 E-value=2.2e+02 Score=26.90 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=34.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHh
Q 014627 288 SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 288 ag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al 346 (421)
.|.+++....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|..
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~ 86 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIYGI 86 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHCH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhccCc
Confidence 3555555556666777788888999999873 5789999998776643
No 73
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=41.99 E-value=2.1e+02 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 321 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d 321 (421)
..+++++|+.+-..-.|..+......-++=...+++..+.+.++-+..+...-+.||+..|...
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4579999998765555544333222212112346677677888999999999999999999643
No 74
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=40.29 E-value=1.9e+02 Score=30.01 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHHHHHHHHHHH--cC-CChhH-HHH---HHHHHHHH
Q 014627 234 IKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIAASTKGAAIF--SG-VDGSL-SKQ---MYEYGRNL 305 (421)
Q Consensus 234 ~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~~a~~~gail--ag-~~~~~-~~~---l~~~G~~l 305 (421)
+..+.+....++.+-+.+..+.. ...+|+++|+..-..-+|..... ..+.+ +. .+++. .+- ..++-+..
T Consensus 363 ~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~---~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~ 439 (549)
T 1n1b_A 363 LQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII---SPTYFTFANASHDTAVIDSLYQYHDILCLA 439 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH---HHHHTTSTTCCCCHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH---HHHHHHcCCCCcHHHHHhhhcccHHHHHHH
Confidence 34455566666666666655433 34579999998654443433221 11122 22 23444 333 23577788
Q ss_pred HHHHHHHHhhhhccc
Q 014627 306 GLSFQIVDDILDFTQ 320 (421)
Q Consensus 306 G~afQI~DDllD~~~ 320 (421)
++..-+.||+..+-.
T Consensus 440 ~~i~RL~NDi~S~~~ 454 (549)
T 1n1b_A 440 GIILRLPDDLGTSYF 454 (549)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHhcccchhhh
Confidence 888999999999853
No 75
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=37.52 E-value=28 Score=33.19 Aligned_cols=61 Identities=25% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCCC------------CCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHc
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLDE------------SDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLAN 227 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 227 (421)
....+...-+.+=.|+-|.|||.|- ++.+.|++|+=..+|...+--...-+..+|...|..
T Consensus 204 ~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 204 ALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666778888999999999762 345677788877777666555555555555555544
No 76
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=36.65 E-value=1.2e+02 Score=29.52 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCCC------------CCCCCCCchhhhhcC
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLDE------------SDMRRGQETVHQLYG 206 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G 206 (421)
....+...-+.|=.|+-|.|||.|- ++.|.|++|+-..|+
T Consensus 213 ~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~a 264 (345)
T 3oyr_A 213 KSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLA 264 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHH
Confidence 4455677788889999999999873 355666666654443
No 77
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=35.89 E-value=1.8e+02 Score=31.67 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHH--HHHHHHHHHHcC-CChhHHHHHH-----HHHHH
Q 014627 234 IKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLI--AASTKGAAIFSG-VDGSLSKQMY-----EYGRN 304 (421)
Q Consensus 234 ~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf--~~a~~~gailag-~~~~~~~~l~-----~~G~~ 304 (421)
+..+.++...++.+-+.+..+.. ...+|+++|+..-.--+|... ...+..+ ++. .+++..+... ++-+.
T Consensus 627 ~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~~ 704 (817)
T 3sdr_A 627 VSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTEL 704 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHHH
Confidence 44556666777777776665543 346899999986554444322 2222211 121 3455555443 56778
Q ss_pred HHHHHHHHHhhhhccc
Q 014627 305 LGLSFQIVDDILDFTQ 320 (421)
Q Consensus 305 lG~afQI~DDllD~~~ 320 (421)
.+...-+.||+..+..
T Consensus 705 ~~~I~RL~NDi~S~k~ 720 (817)
T 3sdr_A 705 NSLISRLADDTKTYKA 720 (817)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhccchHHHH
Confidence 8888899999999853
No 78
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=35.28 E-value=1.6e+02 Score=27.76 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCCC--CCC--------CCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHccC
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLDE--SDM--------RRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD~--s~~--------RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~ 229 (421)
....+...-+.|=.|+-|.|||.|- ++. ..||+|+-..+|...|--.-.-++..+...|..++
T Consensus 196 ~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 268 (291)
T 3npk_A 196 ESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLN 268 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3455677788888999999999652 222 24666777777777666666666667776666654
No 79
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=35.08 E-value=2.9e+02 Score=25.99 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 291 DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 291 ~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
+.+....+...-+.|=.+.-|.||+.|= +|+|.|++|+-..|.
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~G 108 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMYG 108 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhcC
Confidence 4444556666777888899999999762 678999999987774
No 80
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=34.71 E-value=3.1e+02 Score=26.24 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=32.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 288 SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 288 ag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
.|.+++....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|.
T Consensus 55 ~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 100 (340)
T 2e8v_A 55 MNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIFG 100 (340)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhccC
Confidence 3555554455666667777788899999772 578899999876653
No 81
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=33.21 E-value=1.9e+02 Score=27.16 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcCC-----CCCCCCCCchhhhhc---CHHHHH-HHhHHHHHHHHHHHHccC
Q 014627 167 KHRRLAEIIEMIHTASLIHDDVLD-----ESDMRRGQETVHQLY---GTRVAV-LAGDFMFAQSSWYLANLE 229 (421)
Q Consensus 167 ~~~~lA~avEllH~AsLIHDDIiD-----~s~~RRG~pt~h~~~---G~~~AI-l~GD~Ll~~a~~~l~~~~ 229 (421)
....+...-+.+=.|+-|.|||.| .++.+.|+.|+-..+ |...++ ...+-+..+|...|..++
T Consensus 189 ~~~~l~~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp 260 (289)
T 2azj_A 189 TKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIP 260 (289)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344566677788889999999976 244567777776666 655442 223344445555555543
No 82
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=33.13 E-value=2.8e+02 Score=29.95 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHH-HHHHHHHHHHHcC-CChhHHHHH---HHHHHHHH
Q 014627 233 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASL-IAASTKGAAIFSG-VDGSLSKQM---YEYGRNLG 306 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~L-f~~a~~~gailag-~~~~~~~~l---~~~G~~lG 306 (421)
++..+.++...++.+-+.+..+.. ...+|+++|+..-.--+|.. +...+..+ ++. .+++..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 345566666777777766665543 34689999998755444443 22222221 122 345555544 35778888
Q ss_pred HHHHHHHhhhhccc
Q 014627 307 LSFQIVDDILDFTQ 320 (421)
Q Consensus 307 ~afQI~DDllD~~~ 320 (421)
...-+.||+..+..
T Consensus 645 ~I~RL~NDi~S~k~ 658 (764)
T 3p5p_A 645 LSWRLTNDTKTYQA 658 (764)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHH
Confidence 88999999999853
No 83
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=32.61 E-value=3.3e+02 Score=25.84 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 284 AAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 284 gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
++.+.|.+++....+...-+.|=.+.-|.||+.|= +|+|.|++|+-..|.
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 104 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAFD 104 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHTC
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCcccccC
Confidence 33334545444455666667777788999999872 677889998876653
No 84
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=32.49 E-value=3e+02 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 291 DGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 291 ~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
+++....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|.
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 101 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMYG 101 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHC
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhcC
Confidence 4444445566666777788899999872 678999999887764
No 85
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=32.41 E-value=3.2e+02 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=33.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhh--hhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 288 SGVDGSLSKQMYEYGRNLGLSFQIVDDI--LDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 288 ag~~~~~~~~l~~~G~~lG~afQI~DDl--lD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
.|.+++....+...-+.|=.+.=|.||+ .|= +|+|.|++|+-..|.
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~G 108 (284)
T 2ftz_A 61 LGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTYG 108 (284)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHHC
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhcC
Confidence 3455554455666667777888999999 883 678999999888773
No 86
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=31.06 E-value=4.5e+02 Score=26.96 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcc-CCCCCHHHHHHHHhcccHHHHH-HHHHHHHHHcC-CChhHHHHH---HHHHHHHH
Q 014627 233 VIKLISQVIKDFASGEIKQASSLF-DCDLELEEYLIKSYYKTASLIA-ASTKGAAIFSG-VDGSLSKQM---YEYGRNLG 306 (421)
Q Consensus 233 v~~~~s~~~~~l~~Ge~~q~~~~~-~~~~t~~~Y~~~i~~KTa~Lf~-~a~~~gailag-~~~~~~~~l---~~~G~~lG 306 (421)
++..+.+....++.+-+.+..+.. ...+|+++|+..-..-.|.... .....+ ++. .+++..+-+ -++-+..+
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~~t~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR--VTDSFTKETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH--HSSCCCHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhcccHHHHHHHH
Confidence 344556666777777666665543 3457999999765444443322 222222 122 344443332 35667778
Q ss_pred HHHHHHHhhhhccc
Q 014627 307 LSFQIVDDILDFTQ 320 (421)
Q Consensus 307 ~afQI~DDllD~~~ 320 (421)
+..-+.||+..+-.
T Consensus 434 ~i~RL~NDi~S~~~ 447 (543)
T 2ong_A 434 FVLRLADDLGTSVE 447 (543)
T ss_dssp HHHHHHHHHHSSHH
T ss_pred HHHHHhcccchhhh
Confidence 88889999999853
No 87
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=28.73 E-value=2.7e+02 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 289 GVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 289 g~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
|.+.+....+...-+.|=.++-|.||+.|= +|+|.|++|+-..|.
T Consensus 61 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 105 (358)
T 4dhd_A 61 SGQWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAFG 105 (358)
T ss_dssp HSCCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhcC
Confidence 334444455666778888899999999772 677999999887774
No 88
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=26.88 E-value=3.3e+02 Score=26.01 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHh
Q 014627 290 VDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 290 ~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al 346 (421)
.+.+....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|..
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~ 117 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTYGQ 117 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHcCc
Confidence 46665666777778888899999999872 6789999998777643
No 89
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=22.87 E-value=2.3e+02 Score=22.26 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=43.0
Q ss_pred hHHHHHHHhhcCCcccHHH----HHHHHHhhCcHHHHHHHHHHHHHHH--------H-----HHhccCCCChHHHHHHHH
Q 014627 350 PKLREIIESEFCETGSLDE----AIKLVKTSGGIEEAQELAKEKANLA--------I-----HNLHCLPRSPFRVALEDM 412 (421)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~----i~~li~~~g~i~~a~~~a~~~~~~A--------~-----~~L~~lp~~~~r~~L~~l 412 (421)
+.++..+...+...++.++ +...+.++|-.+..+..+++.+++- + .+-+.+|++.-++.|..+
T Consensus 6 ~~lk~~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~I 85 (96)
T 3mhs_B 6 AQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQI 85 (96)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHH
Confidence 4566666666555555444 4456678888888888888777531 1 122367777777777777
Q ss_pred HHHH
Q 014627 413 VMFN 416 (421)
Q Consensus 413 ~~~~ 416 (421)
-.|+
T Consensus 86 r~fL 89 (96)
T 3mhs_B 86 REFL 89 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 90
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=22.85 E-value=3.1e+02 Score=26.20 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=34.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHHh
Q 014627 288 SGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFAL 346 (421)
Q Consensus 288 ag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~al 346 (421)
.|.+++....+...-+.|=.+.-|.||+.|= +|+|.|++|+-..|..
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~ 107 (342)
T 1wy0_A 61 VGGDPLRAIYPAVAIELIHNYSLVHDDIMDM------------DETRRGKPTVHRIWGV 107 (342)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCCSTTSCCHHHHHCH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCcccC------------CCCCCCCCccccccCh
Confidence 3545444455666777777888999999872 6789999998877743
No 91
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=22.65 E-value=1.5e+02 Score=23.60 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=44.3
Q ss_pred ChHHHHHHHhhcCCcccHHH----HHHHHHhhCcHHHHHHHHHHHHHHH----------H-----HHhccCCCChHHHHH
Q 014627 349 EPKLREIIESEFCETGSLDE----AIKLVKTSGGIEEAQELAKEKANLA----------I-----HNLHCLPRSPFRVAL 409 (421)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~----i~~li~~~g~i~~a~~~a~~~~~~A----------~-----~~L~~lp~~~~r~~L 409 (421)
.+.++..+...+...++.++ +.+.+.++|-.+..+..+++.+++- + .+-+.+|++.-++.|
T Consensus 9 e~~lka~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell 88 (101)
T 4dhx_B 9 DAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELL 88 (101)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHH
Confidence 45666666666655555444 3455667787777777777766532 1 122357887778888
Q ss_pred HHHHHHHhc
Q 014627 410 EDMVMFNLE 418 (421)
Q Consensus 410 ~~l~~~~~~ 418 (421)
..+-.|+-+
T Consensus 89 ~rIr~fL~~ 97 (101)
T 4dhx_B 89 QRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887643
No 92
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=21.77 E-value=4.7e+02 Score=24.04 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHhcccHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 014627 258 CDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQ 320 (421)
Q Consensus 258 ~~~t~~~Y~~~i~~KTa~Lf~~a~~~gailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~ 320 (421)
..+++++|+.+-..-.|..+..+...-+.=-..+++..+.+.++-+..+...-+.||+..|..
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 467999999876666665443322221211234666767788888999999999999999953
No 93
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.60 E-value=2e+02 Score=27.06 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcCCCCCCCCCCchhhhhcCHHHHHHHhHHHHHHHHHHHHcc
Q 014627 166 TKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANL 228 (421)
Q Consensus 166 ~~~~~lA~avEllH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 228 (421)
+....+...-+.+=.|+-|.|||.|--..- |+|+-..+|...|.-...-+..+|...|..+
T Consensus 213 ~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l 273 (293)
T 2j1p_A 213 EEIERLRKFARCIGLLFQVVDDILDVTKSS--KLTYPKLMGLEKSREFAEKLNTEARDQLLGF 273 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344456677788889999999998732111 6676666666666666666666666666555
No 94
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=20.44 E-value=3.5e+02 Score=25.68 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=34.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhCCCCcccccCCcccHHHHHH
Q 014627 285 AIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFA 345 (421)
Q Consensus 285 ailag~~~~~~~~l~~~G~~lG~afQI~DDllD~~~d~~~~GK~~g~DL~egk~TlP~l~a 345 (421)
+...|.+++....+...-+.|=.+.=|.||+.|= +|+|.|++|+-..|.
T Consensus 51 ~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~G 99 (330)
T 1wmw_A 51 ALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLHP 99 (330)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHSC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCccccccC
Confidence 3334555555556666777777888999999872 577899998876653
Done!