BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014630
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1
Length = 358
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 125/295 (42%), Gaps = 41/295 (13%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
+FS E RI + + KG +E T R R FG Y Y
Sbjct: 60 LFSPDECARIEAKIDEVVSRAEKGLYREHTVD------RAPLRNKYFFGEGYTYGAQLQR 113
Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
PG + P VD +P + +++IRRLV+ V+P V +S ++N Y+ G CI H+D
Sbjct: 114 RGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 172
Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
H F RP +VSF S+ + FG K + E +P+ GSV VL+G AAD
Sbjct: 173 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQR--GSVTVLSGYAADEI 230
Query: 325 KHCVPA--VPTKRISITFRK-------MDESKRPFGFVPEPDLQG------IQPL----- 364
HC+ + +R + RK ++ + PE LQG ++P
Sbjct: 231 THCIRPQDIKERRAVVILRKTRTEAPRLEMKSLSSSYQPE-RLQGSNRQHILKPKRSHRK 289
Query: 365 --PYDAEKPKIFKSDGLAKKQRVRREPKMDGREHGERSDA-RSQHHYPDSVCATA 416
P A +P+I + D ++ V PK R H + R H Y D+ T
Sbjct: 290 ADPDAAHRPRILEMDKEENRRSV-LLPKQRRRSHFSSENYWRRSHDYVDTYTETG 343
>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1
Length = 395
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
+FS E +I + + KG E T R R FG Y Y
Sbjct: 95 LFSQDECSKIEARIDEVVSRAEKGLYNEHTVD------RAPLRNKYFFGEGYTYGAQLQK 148
Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+D
Sbjct: 149 RGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 207
Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
H F RP +VSF S+ + FG K + E S+P+ GSV VL+G AAD
Sbjct: 208 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRR--GSVTVLSGYAADEI 265
Query: 325 KHCV--PAVPTKRISITFRK 342
HC+ + +R I RK
Sbjct: 266 THCIRPQDIKERRAVIILRK 285
>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2
Length = 395
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
+FS E +I + + KG E T R R FG Y Y
Sbjct: 95 LFSQDECSKIEARIDEVVSRAEKGLYNEHTVD------RAPLRNKYFFGEGYTYGAQLQK 148
Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+D
Sbjct: 149 RGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 207
Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
H F RP +VSF S+ + FG K + E S+P+ GSV VL+G AAD
Sbjct: 208 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRR--GSVTVLSGYAADEI 265
Query: 325 KHCV--PAVPTKRISITFRK 342
HC+ + +R I RK
Sbjct: 266 THCIRPQDIKERRAVIILRK 285
>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2
Length = 394
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
+FS E +I + + KG E T R R FG Y Y
Sbjct: 94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVD------RAPLRNKYFFGEGYTYGAQLQK 147
Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+D
Sbjct: 148 RGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 206
Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
H F RP +VSF S+ + FG K + E S+P+ GSV VL+G AAD
Sbjct: 207 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRR--GSVTVLSGYAADEI 264
Query: 325 KHCV--PAVPTKRISITFRK 342
HC+ + +R I RK
Sbjct: 265 THCIRPQDIKERRAVIILRK 284
>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1
Length = 394
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
+FS E +I + + KG E T R R FG Y Y
Sbjct: 94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVD------RAPLRNKYFFGEGYTYGAQLQK 147
Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+D
Sbjct: 148 RGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 206
Query: 268 N-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVGSVLVLNGNAADVA 324
H F RP +VSF S+ + FG K + E S+P+ GSV VL+G AAD
Sbjct: 207 PIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRR--GSVTVLSGYAADEI 264
Query: 325 KHCVPA--VPTKRISITFRK 342
HC+ + +R I RK
Sbjct: 265 THCIRPQDIKERRAVIILRK 284
>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1
Length = 360
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
FG Y Y PG + P VD +P + +++IRRLV+ ++P V +S ++N
Sbjct: 103 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPGWVHELVIRRLVERRIIPEGFV-NSAVIN 161
Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPIALPVG 311
Y+ G CI H+D H F RP +VSF S+ + FG K + E +P+ G
Sbjct: 162 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVRR--G 219
Query: 312 SVLVLNGNAADVAKHCV--PAVPTKRISITFRK 342
SV VL+G AAD HC+ + +R + RK
Sbjct: 220 SVTVLSGYAADEITHCIRPQDIKERRAVVILRK 252
>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1
Length = 352
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 151 GIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKN 210
IF+ E RI + + KG +E T R R FG Y Y
Sbjct: 61 SIFTLEECARIEAKIDEVVAKADKGLYREHTVD------RAPLRNKYFFGEGYTYGAQLE 114
Query: 211 GNPPG---ILQNEPVDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + VD +P + +++I RLV V+P V +S ++N Y+ G CI H+
Sbjct: 115 KRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFV-NSAVINDYQPGGCIVSHV 173
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSN--LKVVGAGEFAGSIPIALPVGSVLVLNGNAADV 323
D H F RP +VSF S+ + FG K + E +P+ GSV VL+G AAD
Sbjct: 174 DPIHIFERPIVSVSFFSDSALCFGCKFLFKPIRVSEPVLHLPVRR--GSVTVLSGYAADD 231
Query: 324 AKHCV--PAVPTKRISITFRK 342
HC+ + +R I RK
Sbjct: 232 ITHCIRPQDIKERRAVIILRK 252
>sp|Q5UR03|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L905 PE=4 SV=1
Length = 210
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 32/149 (21%)
Query: 220 EPVD--PLPHLFKVIIRRLVKWHVLPPTC--VPDSCIVNIYEEGDCIPPHIDNHDFVRPF 275
EP D P+P+ + +L+ +L PD IVN Y+ G+ + PH D D+ +
Sbjct: 59 EPYDLIPIPNKIPKYLDQLINQMILDKIIDQKPDQIIVNEYKPGEGLKPHFDRKDYYQ-- 116
Query: 276 CTVSFLSECNIVFGSNLKVVGAGEFAGSIP------IALPVGSVLVLNGNAADVAKHCVP 329
N++ G +L EF + P I +P S+ ++ +A + KH +P
Sbjct: 117 ---------NVIIGLSLGSGTIMEFYKNKPIPEKKKIYIPPRSLYIIKDDARYIWKHGIP 167
Query: 330 ----------AVPTK-RISITFRKMDESK 347
+P + RISITFR + + K
Sbjct: 168 PRKYDEINGKKIPRETRISITFRNVIKEK 196
>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8
PE=2 SV=1
Length = 664
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYN 204
GL++ E I S+ ++K +++ V+ + T+ + +K+ K R FG ++
Sbjct: 136 GLKVIEEIISSEDEKMLLESVNWTED--TENQNFQKSL---------KHRRVKHFGYEFH 184
Query: 205 YA---TDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDC 261
Y DK+ PG LP + + I+ + +K + PD +N YE G
Sbjct: 185 YENNNVDKDKPLPG--------GLPDICESILEKWLKEGFIKHK--PDQLTINQYEPGHG 234
Query: 262 IPPHIDNHD-FVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVGSVLVLNGNA 320
IP HID H F ++S SE + F ++P+ LP S+LV+ G +
Sbjct: 235 IPAHIDTHSAFEDEIISLSLGSEIVMDFKH--------PDGMTVPVMLPCRSLLVMTGES 286
Query: 321 ADVAKHCV 328
+ H +
Sbjct: 287 RYLWTHGI 294
>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens
GN=ALKBH8 PE=1 SV=2
Length = 664
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 248 PDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPI 306
PD +N YE G IP HID H F ++S SE + F + ++P+
Sbjct: 221 PDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGI--------AVPV 272
Query: 307 ALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMD 344
LP S+LV+ G + + H IT RK D
Sbjct: 273 MLPRRSLLVMTGESRYLWTH----------GITCRKFD 300
>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis
GN=ALKBH8 PE=2 SV=1
Length = 664
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 248 PDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSE-CNIVFGSNLKVVGAGEFAGSIPI 306
PD +N YE G IP HID H +F E ++ GS + + ++P+
Sbjct: 221 PDQMTINQYEPGQGIPAHIDTHS--------AFEDEIVSLSLGSEIVMDFKHPDGTAVPV 272
Query: 307 ALPVGSVLVLNGNAADVAKHCVPAVPTKRISITFRKMD 344
LP S+LV+ G + + H IT RK D
Sbjct: 273 MLPRRSLLVMTGESRYLWTH----------GITCRKFD 300
>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
GN=alkbh8 PE=2 SV=2
Length = 628
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 248 PDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPI 306
PD +N YE G IPPH+D H F ++S +E + F V +P+
Sbjct: 219 PDQLTINQYEPGQGIPPHVDTHSAFEDEILSLSLGAEIVMDFKHPNGSV--------VPV 270
Query: 307 ALPVGSVLVLNGNAADVAKHCV 328
LP S+L+++G + + H +
Sbjct: 271 MLPQRSLLIMSGESRYLWTHGI 292
>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus
GN=Alkbh8 PE=2 SV=1
Length = 664
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 192 KGRITIQFGCCYNY---ATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVP 248
K R FG ++Y DK+ PG LP + I+ +L+K + P
Sbjct: 172 KHRRVKHFGYEFHYESNTVDKDKPLPG--------GLPEVCSSILEKLLKEGYIKHK--P 221
Query: 249 DSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSE-CNIVFGSNLKVVGAGEFAGSIPIA 307
D +N YE G IP HID H +F E ++ GS + + ++ +
Sbjct: 222 DQLTINQYEPGHGIPAHIDTHS--------AFEDEIISLSLGSAIVMDFKHPEGVTVQVM 273
Query: 308 LPVGSVLVLNGNAADVAKHCV 328
LP S+LV+ G + + H +
Sbjct: 274 LPRRSLLVMTGESRYLWTHGI 294
>sp|A4QKQ3|YCF1_CAPBU Putative membrane protein ycf1 OS=Capsella bursa-pastoris GN=ycf1-A
PE=3 SV=1
Length = 1789
Score = 36.6 bits (83), Expect = 0.41, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 20/105 (19%)
Query: 34 GGSEPDQEASASSGLAFESHLAETPSPRM---SWADMAQEDELEEEGEEEQCKVNKQVND 90
GG++ DQE S AE P P + D+ + DE+EE E+ K+NK +D
Sbjct: 259 GGTKQDQEVST----------AEAPFPSLFSEEGEDLDKIDEMEEIRVNEKDKINK--DD 306
Query: 91 GVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKD-FICLEK 134
+V + K V + + +E ++ F +++K+D F+ EK
Sbjct: 307 EFHV----RTYYKTVSENLDGNKENSNLEFFKIKKKEDHFLWFEK 347
>sp|Q6PHQ8|NAA35_MOUSE N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Mus
musculus GN=Naa35 PE=1 SV=1
Length = 725
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 227 HLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTV 278
HL + +++ ++ V PP P C+ N ++ DCI + + VRPFC++
Sbjct: 386 HLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTH--CVRPFCSL 435
>sp|Q6DKG0|NAA35_RAT N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Rattus
norvegicus GN=Naa35 PE=2 SV=1
Length = 725
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 227 HLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTV 278
HL + +++ ++ V PP P C+ N ++ DCI + + VRPFC++
Sbjct: 386 HLMQDMVKDALRSFVSPPVLSPKCCLYNNHQAKDCIDSFVTH--CVRPFCSL 435
>sp|Q9UT12|YLW2_SCHPO Uncharacterized protein P8A3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.02c PE=3 SV=1
Length = 225
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 22/113 (19%)
Query: 249 DSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIAL 308
++ I+ +Y GD I PH D F SFLS ++F E I L
Sbjct: 116 EAIIMQVYNPGDGIIPHKDLEMFGDGVAIFSFLSNTTMIFTH-------PELKLKSKIRL 168
Query: 309 PVGSVLVLNGNAADVAKHCVP---------------AVPTKRISITFRKMDES 346
GS+L+++G A H +P ++R+S+T R++ E+
Sbjct: 169 EKGSLLLMSGTARYDWFHEIPFRAGDWVMNDGEEKWVSRSQRLSVTMRRIIEN 221
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=abh1 PE=2 SV=3
Length = 302
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 249 DSCIVNIYEEGDCIPPHID--NHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPI 306
++ IVN Y GD + HID D P ++S +C + G+ E P
Sbjct: 189 EAAIVNFYSPGDTLSAHIDESEEDLTLPLISLSMGLDCIYLIGT--------ESRSEKPS 240
Query: 307 ALPV--GSVLVLNGNAADVAKHCVPAV 331
AL + G V+++ G + A H VP +
Sbjct: 241 ALRLHSGDVVIMTGTSRK-AFHAVPKI 266
>sp|Q8BUR4|DOCK1_MOUSE Dedicator of cytokinesis protein 1 OS=Mus musculus GN=Dock1 PE=1
SV=3
Length = 1865
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 149 HEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITI 197
H+ I AE K++ D L+ TKGEL+EK +SA K M+ G TI
Sbjct: 549 HDLIVYKAEAKKLEDAATYLSLPSTKGELEEKGHSATGKGMQSLGSCTI 597
>sp|Q918W3|RDRP_ICRSV RNA replication protein OS=Indian citrus ringspot virus (isolate
Kinnow mandarin/India/K1/1996) GN=ORF1 PE=3 SV=1
Length = 1658
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 249 DSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIAL 308
++C+ +++G I H D+ D TV+ N+ + + A G+ L
Sbjct: 576 NTCLAQTHDQGARIGYHADDEDCYDKDVTVA---TVNLTGNATFSLKTA---TGTRTWKL 629
Query: 309 PVGSVLVLNGNAADVAKHCVPAVPTKRISITFR 341
G +VL A KH + T R S+TFR
Sbjct: 630 KPGDFIVLKPGAQGCTKHAISDCTTNRTSLTFR 662
>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3
Length = 7968
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 329 PAVPTKRISITFRKMDESKRPFGFVPEPDLQGIQPLPYDAEKPKIFKSDGLAKKQRVRRE 388
PA T +++++ +DE+ +P PE +G L ++A LA+K+R+ RE
Sbjct: 4704 PAAATFQVALSPASVDEAPQP-SLPPEAAQEGDLHLLWEA----------LARKRRMSRE 4752
Query: 389 PKMDGREHGERSDARSQ 405
P +D D RSQ
Sbjct: 4753 PTLDSISELPEEDGRSQ 4769
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,078,303
Number of Sequences: 539616
Number of extensions: 7861580
Number of successful extensions: 24155
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 24040
Number of HSP's gapped (non-prelim): 124
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)