BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014634
         (421 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
          Length = 573

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 240 SMKKKHQFSHVLLVCFFLCTFIYAS--MAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIY 297
           S++ K Q  H + +C F CT  ++S  +    +  +       + L  PTTK ++   + 
Sbjct: 429 SLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMRLPPPTTKDATLETVM 488

Query: 298 TTLVN 302
            TL N
Sbjct: 489 ATLPN 493


>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase
 pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
           Transcarbamoylase In An Orthorhombic Crystal Form
 pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
           Jannaschii Aspartate Transcarbamoylase In A Hexagonal
           Crystal Form
          Length = 306

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 98  IGDRAFGRNGRIIV---SIFMNIELYLVATGFLILEGDNLENL 137
           +GD  +GR    +V   S+F N+E+Y V+   L L  D +E+L
Sbjct: 157 VGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDL 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,672,420
Number of Sequences: 62578
Number of extensions: 392058
Number of successful extensions: 944
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 4
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)