Query 014634
Match_columns 421
No_of_seqs 136 out of 1361
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5.1E-56 1.1E-60 414.9 28.6 383 28-416 43-449 (449)
2 PTZ00206 amino acid transporte 100.0 4.1E-55 8.8E-60 429.0 31.2 386 31-417 59-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.2E-53 4.8E-58 404.7 32.8 390 25-418 31-436 (437)
4 PF01490 Aa_trans: Transmembra 100.0 2.5E-52 5.4E-57 407.9 -0.1 380 30-413 1-408 (409)
5 PLN03074 auxin influx permease 100.0 6.9E-48 1.5E-52 375.9 27.6 382 29-421 43-456 (473)
6 KOG1305 Amino acid transporter 100.0 2.6E-43 5.6E-48 334.2 23.7 387 28-419 2-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.8E-43 4E-48 311.4 9.1 385 26-420 111-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.6E-33 9.9E-38 268.1 30.6 382 26-412 3-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 1.3E-27 2.9E-32 228.8 30.9 368 30-406 1-392 (394)
10 PRK10483 tryptophan permease; 100.0 6.5E-26 1.4E-30 214.8 32.6 372 27-408 6-402 (414)
11 PRK15132 tyrosine transporter 100.0 7.3E-26 1.6E-30 215.6 31.9 367 33-408 4-391 (403)
12 PRK09664 tryptophan permease T 100.0 2.7E-25 5.8E-30 210.4 32.4 370 30-408 7-403 (415)
13 TIGR00837 araaP aromatic amino 100.0 3.1E-26 6.8E-31 221.2 25.8 339 38-384 3-360 (381)
14 PRK13629 threonine/serine tran 99.9 2.4E-22 5.1E-27 190.4 29.0 374 27-410 17-440 (443)
15 TIGR00814 stp serine transport 99.9 4.3E-23 9.4E-28 197.2 22.4 358 38-402 9-396 (397)
16 PRK10655 potE putrescine trans 99.8 2.1E-17 4.5E-22 162.7 34.6 238 27-272 3-247 (438)
17 TIGR00905 2A0302 transporter, 99.8 6E-17 1.3E-21 160.8 31.7 242 26-273 3-257 (473)
18 PRK10435 cadB lysine/cadaverin 99.8 1.3E-16 2.8E-21 156.7 33.3 240 27-274 2-247 (435)
19 PRK15049 L-asparagine permease 99.8 8.9E-17 1.9E-21 160.0 30.4 349 24-383 22-406 (499)
20 TIGR00912 2A0309 spore germina 99.8 6.8E-17 1.5E-21 154.9 27.1 336 30-383 1-354 (359)
21 PRK10644 arginine:agmatin anti 99.8 2.5E-16 5.4E-21 155.3 31.7 241 27-274 5-251 (445)
22 PRK10249 phenylalanine transpo 99.8 3.3E-16 7.1E-21 154.7 31.5 236 26-272 17-267 (458)
23 TIGR03810 arg_ornith_anti argi 99.8 2.5E-16 5.3E-21 156.2 30.4 347 30-384 1-381 (468)
24 TIGR01773 GABAperm gamma-amino 99.8 2.4E-16 5.1E-21 155.8 29.8 236 25-271 7-258 (452)
25 TIGR00909 2A0306 amino acid tr 99.8 8.7E-16 1.9E-20 151.0 30.1 243 29-272 2-253 (429)
26 PRK11021 putative transporter; 99.8 3.1E-15 6.7E-20 146.0 33.7 229 32-269 1-232 (410)
27 PRK10746 putative transport pr 99.8 1E-15 2.2E-20 151.1 30.0 347 26-384 6-389 (461)
28 PRK11387 S-methylmethionine tr 99.8 1.1E-15 2.4E-20 151.6 30.3 237 27-274 11-266 (471)
29 PRK11049 D-alanine/D-serine/gl 99.8 1.4E-15 3E-20 150.7 29.5 235 25-270 15-267 (469)
30 KOG1287 Amino acid transporter 99.7 6.2E-16 1.3E-20 147.1 23.7 354 24-384 6-387 (479)
31 TIGR00930 2a30 K-Cl cotranspor 99.7 3.9E-15 8.4E-20 156.5 31.6 242 26-268 72-334 (953)
32 TIGR00906 2A0303 cationic amin 99.7 3.3E-15 7.2E-20 150.2 29.4 356 25-383 23-411 (557)
33 PRK10836 lysine transporter; P 99.7 7.5E-15 1.6E-19 146.3 31.4 237 26-273 11-264 (489)
34 PRK10238 aromatic amino acid t 99.7 6.6E-15 1.4E-19 145.3 30.5 346 25-384 7-387 (456)
35 PRK10580 proY putative proline 99.7 2E-14 4.4E-19 142.1 33.9 234 25-269 4-254 (457)
36 COG1113 AnsP Gamma-aminobutyra 99.7 1.1E-15 2.5E-20 142.9 22.8 346 24-383 7-389 (462)
37 TIGR00913 2A0310 amino acid pe 99.7 6.5E-14 1.4E-18 139.6 32.1 229 29-268 1-251 (478)
38 TIGR00908 2A0305 ethanolamine 99.7 6.6E-14 1.4E-18 138.1 31.2 232 26-268 3-245 (442)
39 PF13520 AA_permease_2: Amino 99.7 6.8E-14 1.5E-18 137.5 30.0 343 32-384 1-376 (426)
40 PRK10197 gamma-aminobutyrate t 99.7 4.2E-14 9.2E-19 139.2 28.3 329 41-383 3-368 (446)
41 TIGR00911 2A0308 L-type amino 99.7 5E-14 1.1E-18 141.0 29.3 242 26-273 38-294 (501)
42 PRK11357 frlA putative fructos 99.7 1.1E-13 2.3E-18 136.6 28.7 236 26-270 4-251 (445)
43 PF03845 Spore_permease: Spore 99.6 4.6E-14 1E-18 133.0 23.0 285 31-327 1-297 (320)
44 COG0531 PotE Amino acid transp 99.6 5.8E-12 1.3E-16 125.3 31.1 248 24-275 6-262 (466)
45 PRK15238 inner membrane transp 99.5 5.3E-11 1.1E-15 119.0 32.2 241 27-269 4-266 (496)
46 TIGR03428 ureacarb_perm permea 99.5 1.6E-10 3.4E-15 115.0 35.0 250 25-274 8-273 (475)
47 TIGR00907 2A0304 amino acid pe 99.5 8.6E-11 1.9E-15 117.2 33.1 242 26-268 8-271 (482)
48 KOG1286 Amino acid transporter 99.5 1.5E-12 3.4E-17 128.7 20.0 352 25-383 25-423 (554)
49 COG0833 LysP Amino acid transp 99.5 6.1E-11 1.3E-15 113.9 27.2 346 27-383 41-428 (541)
50 TIGR03813 put_Glu_GABA_T putat 99.5 1.7E-10 3.6E-15 114.8 31.4 238 30-274 1-254 (474)
51 TIGR00910 2A0307_GadC glutamat 99.4 2.1E-09 4.6E-14 107.4 31.1 232 28-267 2-247 (507)
52 PF00324 AA_permease: Amino ac 99.3 4.9E-11 1.1E-15 118.9 13.9 231 40-276 5-262 (478)
53 KOG1289 Amino acid transporter 98.9 2.1E-06 4.6E-11 82.9 28.6 246 25-275 43-313 (550)
54 KOG3832 Predicted amino acid t 98.9 2.7E-08 5.8E-13 83.0 11.9 209 35-244 15-302 (319)
55 COG3949 Uncharacterized membra 98.7 4.9E-06 1.1E-10 75.4 21.9 216 35-265 6-229 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 4.4E-05 9.5E-10 75.3 25.8 295 27-324 9-329 (442)
57 COG1457 CodB Purine-cytosine p 98.5 0.00011 2.4E-09 70.7 26.4 256 96-368 84-347 (442)
58 TIGR02358 thia_cytX probable h 98.5 0.00025 5.4E-09 68.5 27.6 285 64-368 31-319 (386)
59 PRK11375 allantoin permease; P 98.4 0.00032 7E-09 69.7 27.8 339 25-371 20-391 (484)
60 TIGR00813 sss transporter, SSS 98.4 0.00025 5.3E-09 69.3 26.2 151 29-191 2-154 (407)
61 PF00474 SSF: Sodium:solute sy 98.4 0.00028 6E-09 69.0 25.9 154 29-194 5-161 (406)
62 TIGR02119 panF sodium/pantothe 98.4 0.0022 4.7E-08 64.0 31.6 233 28-272 38-293 (471)
63 COG0591 PutP Na+/proline sympo 98.3 0.0011 2.3E-08 66.3 28.9 152 28-191 36-193 (493)
64 TIGR00796 livcs branched-chain 98.3 0.002 4.3E-08 61.6 28.4 312 40-379 3-346 (378)
65 PRK12488 acetate permease; Pro 98.3 0.0033 7.2E-08 63.8 31.6 153 28-192 65-219 (549)
66 PRK09442 panF sodium/panthothe 98.3 0.0026 5.6E-08 63.6 29.5 233 28-272 39-294 (483)
67 PRK11017 codB cytosine permeas 98.2 0.0036 7.8E-08 61.0 28.6 198 64-275 44-244 (404)
68 TIGR00835 agcS amino acid carr 98.2 0.0032 7E-08 60.8 27.2 150 29-191 44-203 (425)
69 PRK09395 actP acetate permease 98.1 0.013 2.9E-07 59.5 31.8 151 28-190 67-219 (551)
70 COG0733 Na+-dependent transpor 98.1 0.0038 8.2E-08 59.8 25.3 235 28-267 5-267 (439)
71 COG1914 MntH Mn2+ and Fe2+ tra 98.0 0.016 3.5E-07 55.9 28.5 362 30-410 15-409 (416)
72 TIGR02711 symport_actP cation/ 98.0 0.021 4.5E-07 58.0 30.2 151 28-190 65-217 (549)
73 COG1953 FUI1 Cytosine/uracil/t 98.0 0.0079 1.7E-07 58.4 25.2 341 27-372 36-406 (497)
74 TIGR03648 Na_symport_lg probab 97.9 0.034 7.3E-07 56.6 32.1 151 28-190 30-182 (552)
75 PF02133 Transp_cyt_pur: Perme 97.9 0.0004 8.7E-09 68.6 15.6 244 27-273 4-260 (440)
76 PRK15419 proline:sodium sympor 97.9 0.033 7.1E-07 56.0 29.3 152 28-190 38-197 (502)
77 KOG1288 Amino acid transporter 97.8 0.0034 7.3E-08 62.4 19.9 243 27-271 62-351 (945)
78 PF02554 CstA: Carbon starvati 97.8 0.0043 9.2E-08 57.9 19.4 113 24-136 44-157 (376)
79 PRK10484 putative transporter; 97.7 0.07 1.5E-06 54.0 29.6 161 28-191 36-199 (523)
80 PRK00701 manganese transport p 97.7 0.074 1.6E-06 52.3 30.3 47 91-137 92-138 (439)
81 TIGR02121 Na_Pro_sym sodium/pr 97.6 0.084 1.8E-06 52.9 32.3 153 28-191 34-194 (487)
82 PF01235 Na_Ala_symp: Sodium:a 97.6 0.03 6.5E-07 54.0 22.2 152 24-188 11-173 (416)
83 PF05525 Branch_AA_trans: Bran 97.0 0.17 3.6E-06 49.2 20.7 325 31-380 2-353 (427)
84 PF00209 SNF: Sodium:neurotran 96.9 0.54 1.2E-05 47.6 24.9 103 164-266 190-301 (523)
85 COG1966 CstA Carbon starvation 96.9 0.038 8.2E-07 54.1 14.8 111 24-134 44-155 (575)
86 PRK15015 carbon starvation pro 96.7 0.035 7.6E-07 55.6 13.7 110 25-134 76-186 (701)
87 KOG2083 Na+/K+ symporter [Inor 96.4 0.027 5.9E-07 55.5 9.9 227 29-266 27-275 (643)
88 PF01566 Nramp: Natural resist 96.0 1.5 3.2E-05 42.0 24.6 88 91-189 40-129 (358)
89 PHA02764 hypothetical protein; 95.7 1.7 3.7E-05 40.0 22.1 95 28-123 10-107 (399)
90 PF02028 BCCT: BCCT family tra 95.7 2.5 5.5E-05 42.0 24.6 162 27-198 70-264 (485)
91 PRK15433 branched-chain amino 95.7 2.4 5.1E-05 41.4 24.1 319 33-379 9-355 (439)
92 COG4147 DhlC Predicted symport 95.1 3.6 7.8E-05 40.1 24.2 180 81-272 93-294 (529)
93 PF05525 Branch_AA_trans: Bran 94.3 0.38 8.2E-06 46.8 10.1 82 91-183 259-340 (427)
94 TIGR00796 livcs branched-chain 94.0 0.59 1.3E-05 44.9 10.8 82 91-183 253-334 (378)
95 KOG2349 Na+:iodide/myo-inosito 94.0 0.99 2.1E-05 45.4 12.4 234 27-273 42-298 (585)
96 COG1115 AlsT Na+/alanine sympo 92.0 13 0.00028 36.2 25.5 150 27-189 58-218 (452)
97 COG1114 BrnQ Branched-chain am 91.6 3.4 7.4E-05 39.6 11.8 81 91-182 261-341 (431)
98 COG4145 PanF Na+/panthothenate 90.2 17 0.00037 34.5 22.2 237 29-278 38-301 (473)
99 TIGR01197 nramp NRAMP (natural 90.0 19 0.00042 34.8 27.6 90 91-191 62-153 (390)
100 KOG2082 K+/Cl- cotransporter K 88.8 33 0.00071 35.8 25.0 107 29-136 112-222 (1075)
101 PRK09950 putative transporter; 88.7 28 0.00061 34.9 24.6 167 29-198 81-274 (506)
102 KOG2466 Uridine permease/thiam 87.6 30 0.00066 34.1 18.0 257 26-287 50-333 (572)
103 PRK15433 branched-chain amino 86.7 5 0.00011 39.2 9.4 75 95-181 267-341 (439)
104 PRK09928 choline transport pro 83.3 62 0.0013 33.7 23.6 166 30-198 91-281 (679)
105 PLN02680 carbon-monoxide oxyge 83.0 9.5 0.0002 33.7 8.6 100 209-314 44-143 (232)
106 KOG3660 Sodium-neurotransmitte 78.4 88 0.0019 32.4 20.4 60 26-85 32-97 (629)
107 TIGR00842 bcct choline/carniti 76.0 86 0.0019 31.1 22.8 107 32-138 37-169 (453)
108 PRK03356 L-carnitine/gamma-but 73.8 1E+02 0.0023 31.0 25.1 111 29-139 83-220 (504)
109 COG0814 SdaC Amino acid permea 72.0 1E+02 0.0022 30.2 19.5 166 219-384 194-377 (415)
110 cd08762 Cyt_b561_CYBASC3 Verte 70.2 17 0.00037 30.7 6.4 108 201-313 24-133 (179)
111 COG1114 BrnQ Branched-chain am 67.5 1.3E+02 0.0027 29.4 22.9 318 31-379 4-354 (431)
112 KOG1289 Amino acid transporter 62.6 1.4E+02 0.0031 30.0 11.9 49 92-140 324-372 (550)
113 PLN02810 carbon-monoxide oxyge 61.5 76 0.0016 28.1 8.8 99 210-314 45-143 (231)
114 COG3949 Uncharacterized membra 52.7 2.1E+02 0.0045 27.0 16.6 11 368-378 328-338 (349)
115 cd08765 Cyt_b561_CYBRD1 Verteb 50.9 33 0.00071 28.3 4.7 106 204-314 4-111 (153)
116 COG1292 BetT Choline-glycine b 49.3 3E+02 0.0064 27.9 22.1 27 24-53 83-109 (537)
117 PRK11403 hypothetical protein; 48.2 92 0.002 23.9 6.2 84 332-417 5-90 (113)
118 PF05915 DUF872: Eukaryotic pr 45.1 1.5E+02 0.0032 23.2 7.3 66 31-98 38-112 (115)
119 COG4145 PanF Na+/panthothenate 44.9 3E+02 0.0064 26.6 13.5 50 225-274 394-445 (473)
120 TIGR00909 2A0306 amino acid tr 43.7 3.2E+02 0.0069 26.6 12.3 48 93-140 264-311 (429)
121 cd08766 Cyt_b561_ACYB-1_like P 43.3 77 0.0017 25.8 5.7 101 208-314 4-104 (144)
122 PF11085 YqhR: Conserved membr 40.1 2.1E+02 0.0045 24.0 7.7 35 44-78 47-87 (173)
123 TIGR00907 2A0304 amino acid pe 39.8 3.9E+02 0.0085 26.5 13.5 47 93-139 289-336 (482)
124 TIGR00797 matE putative efflux 38.1 3.3E+02 0.0072 25.2 12.5 37 233-269 52-90 (342)
125 PF05805 L6_membrane: L6 membr 35.7 89 0.0019 26.9 5.1 66 353-418 43-117 (195)
126 COG0534 NorM Na+-driven multid 35.7 2.6E+02 0.0056 27.7 9.3 29 243-271 312-340 (455)
127 COG3817 Predicted membrane pro 33.2 2.9E+02 0.0064 24.8 7.9 32 389-420 166-197 (313)
128 cd08764 Cyt_b561_CG1275_like N 32.5 1.6E+02 0.0034 25.9 6.3 109 202-314 14-123 (214)
129 PRK13183 psbN photosystem II r 32.0 48 0.001 20.9 2.2 28 249-276 6-33 (46)
130 KOG1619 Cytochrome b [Energy p 31.7 2.2E+02 0.0048 25.4 6.9 109 201-314 43-152 (245)
131 COG0534 NorM Na+-driven multid 31.5 4E+02 0.0087 26.4 9.9 129 241-380 86-217 (455)
132 KOG4812 Golgi-associated prote 30.7 98 0.0021 27.4 4.6 73 336-412 159-244 (262)
133 KOG2174 Leptin receptor gene-r 30.7 1.5E+02 0.0033 23.3 5.1 52 34-85 65-119 (131)
134 PF11460 DUF3007: Protein of u 27.8 50 0.0011 25.1 2.1 10 46-55 9-18 (104)
135 PF07954 DUF1689: Protein of u 27.7 1.6E+02 0.0035 24.2 5.2 59 359-418 34-93 (152)
136 PF02468 PsbN: Photosystem II 27.6 50 0.0011 20.6 1.7 26 251-276 5-30 (43)
137 CHL00020 psbN photosystem II p 26.7 48 0.001 20.6 1.5 27 250-276 4-30 (43)
138 PRK10189 MATE family multidrug 23.7 5.4E+02 0.012 25.6 9.4 26 243-268 330-355 (478)
139 PF09716 ETRAMP: Malarial earl 23.7 1.2E+02 0.0027 22.1 3.5 39 236-274 41-79 (84)
140 KOG3659 Sodium-neurotransmitte 23.7 8.2E+02 0.018 25.2 13.6 86 29-116 79-170 (629)
141 PRK09575 vmrA multidrug efflux 23.7 6E+02 0.013 25.0 9.7 22 357-378 188-209 (453)
142 PF02439 Adeno_E3_CR2: Adenovi 23.4 1.3E+02 0.0027 18.3 2.8 29 356-384 5-33 (38)
143 TIGR00905 2A0302 transporter, 23.3 7.4E+02 0.016 24.5 11.3 46 95-140 270-315 (473)
144 PHA02680 ORF090 IMV phosphoryl 22.1 1.6E+02 0.0036 21.5 3.7 45 230-275 26-71 (91)
145 KOG1305 Amino acid transporter 22.1 7.5E+02 0.016 24.2 12.0 239 169-409 147-405 (411)
146 cd02437 CCC1_like_1 CCC1-relat 21.2 1.5E+02 0.0032 25.0 4.1 29 31-59 91-119 (175)
147 PF04835 Pox_A9: A9 protein co 20.5 2.2E+02 0.0049 18.6 3.7 28 250-277 24-51 (54)
148 KOG1287 Amino acid transporter 20.4 5.8E+02 0.013 25.6 8.4 41 95-136 275-315 (479)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-56 Score=414.89 Aligned_cols=383 Identities=24% Similarity=0.351 Sum_probs=341.8
Q ss_pred CCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCCHHHHHH-
Q 014634 28 RTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL-----DSNIKSYPDIGD- 100 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-----~~~~~s~~~l~~- 100 (421)
.++.+|..++..|++++++|+|+|++|+||+++|++ |.+..++.+.++.||++.+++|..+ .....+|.|.++
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 356799999999999999999999999999999998 9999999999999999999998654 223456666654
Q ss_pred ---------HhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccc
Q 014634 101 ---------RAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLD 171 (421)
Q Consensus 101 ---------~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~ 171 (421)
+.+||++|.+++..+.+.++|.|++|++++++.++++++...... .+.+.++.+..+...+++++|
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~-----~s~~~~i~~~~~~~lll~~Ir 197 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGV-----LSVRLYILIQLPPLLLLNLIR 197 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCC-----ccHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999988332211 124577778888899999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhccccccccccccccccccCchhhhhhhhhhccccccchhhHHhhhhccccch---
Q 014634 172 NLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFS--- 248 (421)
Q Consensus 172 ~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~--- 248 (421)
|++.++.+|.+++++++..++++.++...+..+.++.+...+|.+++..+|+.+|||+|+.++.|++++||+|++++
T Consensus 198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~ 277 (449)
T KOG1304|consen 198 NLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPF 277 (449)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCcc
Confidence 99999999999999999999998888877655555555566688999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC-
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS- 327 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~- 327 (421)
+++..++.+++++|..+|++||+.|||++++.++.|+|+ ++.....+.++++.++.+||++++|..+.+++.+.++.+
T Consensus 278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~ 356 (449)
T KOG1304|consen 278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE 356 (449)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence 999999999999999999999999999999999999999 778888889999999999999999999999997654332
Q ss_pred --CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCcc--ccchhHHHHHHHHHHHHH
Q 014634 328 --KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYR--RHGCEMMAILGIVSLAVL 403 (421)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~--~~~~~~~~~~~~~~~g~~ 403 (421)
.++.....|..++++++.+|..+|+++.+++++|+++++.+++++|++++++..++++ +.+|+.+.+..++++|++
T Consensus 357 ~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~ 436 (449)
T KOG1304|consen 357 NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVF 436 (449)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999988764 567899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014634 404 IAVVGTYVSLVQI 416 (421)
Q Consensus 404 ~~~~g~~~si~~l 416 (421)
.++.|||.++.++
T Consensus 437 ~~v~Gty~si~~i 449 (449)
T KOG1304|consen 437 GFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHhhhhhcC
Confidence 9999999999763
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.1e-55 Score=428.96 Aligned_cols=386 Identities=19% Similarity=0.274 Sum_probs=321.1
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchh
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRI 109 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~ 109 (421)
..+..++++|++|+++|+|+|++|++|+++||+ |++++++.+.++.|+.+++.++.++ ++..+|+|++++++||++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 556689999999999999999999999999999 9999999999999999999998775 47789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc-ccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH
Q 014634 110 IVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVG-GLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI 188 (421)
Q Consensus 110 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 188 (421)
++++.+.+.++|.|++|+++.+|.++.+++....... ......+..+.++..++++|++++|+++.++++|.+++.+++
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~ 217 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988865332110 001112223344566788999999999999999999998888
Q ss_pred HHHHhhhhcccccccccc--c-------cc--cccc-cCchhhhhhhhhhccccccchhhHHhhhhcc--ccchhHHHHH
Q 014634 189 ITLGSIFSTGAFDGVGFH--R-------KG--TLVN-WKGIPTSISLYAFCYCAHPVFPTLYTSMKKK--HQFSHVLLVC 254 (421)
Q Consensus 189 ~~~~~i~~~~~~~~~~~~--~-------~~--~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~~~ 254 (421)
+..+.++++...++.+.. + .. ..++ ..+.+.++++.+|||.||.+++++++||||| +|+.++...+
T Consensus 218 ~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s 297 (467)
T PTZ00206 218 YLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIA 297 (467)
T ss_pred HHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHH
Confidence 777776665543322111 0 00 0111 1357889999999999999999999999985 7888999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcchhhhhhhhc-CCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhccccc--CCCCc
Q 014634 255 FFLCTFIYASMAVFGYLMFGSEVQSQITLNL-PTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQY--SKRPY 331 (421)
Q Consensus 255 ~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~--~~~~~ 331 (421)
+.+++++|..+|++||+.||++++++++.|+ |.+|....+++..+++.++.+||++.+|+|+.+++.+..+. .++++
T Consensus 298 ~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~ 377 (467)
T PTZ00206 298 MGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWK 377 (467)
T ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhh
Confidence 9999999999999999999999999999999 56677777888888889999999999999999999874332 23455
Q ss_pred eehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC--ccccchhHHHHHHHHHHHHHHHHHHH
Q 014634 332 SLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGA--YRRHGCEMMAILGIVSLAVLIAVVGT 409 (421)
Q Consensus 332 ~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~g~ 409 (421)
|...+..+...+.++|+.+|+++.+++++|+++++.++|++|+++|++.... ++..+++++.++.++++|++..+.||
T Consensus 378 ~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt 457 (467)
T PTZ00206 378 HCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGT 457 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecc
Confidence 6667777777889999999999999999999999999999999999984211 22234566889999999999999999
Q ss_pred HHHHHHHH
Q 014634 410 YVSLVQII 417 (421)
Q Consensus 410 ~~si~~l~ 417 (421)
|+++++.+
T Consensus 458 ~~si~~~~ 465 (467)
T PTZ00206 458 GATIWGVT 465 (467)
T ss_pred hhHhhHHh
Confidence 99999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-53 Score=404.65 Aligned_cols=390 Identities=33% Similarity=0.606 Sum_probs=348.2
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-----HHHH
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKS-----YPDI 98 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s-----~~~l 98 (421)
+...+++.|++++.++.++.++|.|+|+||++++++||. |++++++.++++.||..+|.+|.+.++...+ |.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 334578899999999999999999999999999999999 8999999999999999999999887655555 9999
Q ss_pred HHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHH
Q 014634 99 GDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSY 178 (421)
Q Consensus 99 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 178 (421)
++++||++++.++.+.+....++.++.|.+..++.++.+.+....+.. ..+ .+.+++++.++.+|++++||++.+++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~ 187 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSY 187 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHH
Confidence 999999999999999999999999999999999999999887765432 222 45788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccc-cccccc--Cch-hhhhhhhhhccccccchhhHHhhhhccccchhHHHHH
Q 014634 179 VSASGVLASIITLGSIFSTGAFDGVGFHRK-GTLVNW--KGI-PTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVC 254 (421)
Q Consensus 179 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 254 (421)
.|..+.+..+....+.++.+..++.+...+ ....++ .+. +++++++.|+|.||..+|+++.+||+|++++|+..++
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis 267 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHH
Confidence 999999999988888888887776554322 222222 222 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC-----CC
Q 014634 255 FFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS-----KR 329 (421)
Q Consensus 255 ~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~-----~~ 329 (421)
+.+++++|+.+++.||++|||+.+++++.|++...|....++.++.++++.+++.+..|..+.+|+....+++ ..
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~ 347 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSL 347 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccc
Confidence 9999999999999999999999999999999866678889999999999999999999999999999875544 44
Q ss_pred CceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHH-HHHHHHHHHHH
Q 014634 330 PYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGI-VSLAVLIAVVG 408 (421)
Q Consensus 330 ~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~g 408 (421)
..|.+.|..++..+.++|..+|+|+.+.+++|+.....+.+++|+++|++.+|.+ ++..++..++.+ .++|++.++..
T Consensus 348 ~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-~~s~~~~~~~~~~~~~~~~~~v~~ 426 (437)
T KOG1303|consen 348 VLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-RFSPKWLLNWVIILVVGLLLSVLA 426 (437)
T ss_pred ceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhhhhhHHHHH
Confidence 5799999999999999999999999999999999999999999999999998877 677788888888 79999999999
Q ss_pred HHHHHHHHHh
Q 014634 409 TYVSLVQIIG 418 (421)
Q Consensus 409 ~~~si~~l~~ 418 (421)
...+++.++.
T Consensus 427 ~~~~~~~li~ 436 (437)
T KOG1303|consen 427 AVGGVRSLII 436 (437)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.5e-52 Score=407.86 Aligned_cols=380 Identities=32% Similarity=0.555 Sum_probs=329.4
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCHHHHHHHhcCc
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL---DSNIKSYPDIGDRAFGR 105 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~---~~~~~s~~~l~~~~~G~ 105 (421)
+|.|+++++++++|+++|+|+|++|++++++||+ |.+++++.+.++.++.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5889999999999999999999999999999999 9999999999999999999999875 35899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
++++++++++.+.++|.+++|.+..+|.+.++++....+ ...++..+.++..++++|++++|+++.+++.+.++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998776532 1123446667788999999999999999999999999
Q ss_pred HHHHHHHhhhhccccccc----ccccc--ccccccCchhhhhhhhhhccccccchhhHHhhhhccccch---hHHHHHHH
Q 014634 186 ASIITLGSIFSTGAFDGV----GFHRK--GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFS---HVLLVCFF 256 (421)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~~~~~~~ 256 (421)
+++..+....+....... +...+ ....++.+++.++++.+|||.+|+++|++++|||+|++++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 988742222222221111 11111 1234557899999999999999999999999999998766 99999999
Q ss_pred HHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccc-----------
Q 014634 257 LCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQ----------- 325 (421)
Q Consensus 257 ~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~----------- 325 (421)
+++++|..+|+.||++||+++++|++.|++++++...+++.++.++++.+||++.+|.++.+++.+.++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 999999999999999999999999999999998888899999999999999999999999999998642
Q ss_pred cCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccc-h---hHHHHHHHHHHH
Q 014634 326 YSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHG-C---EMMAILGIVSLA 401 (421)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~-~---~~~~~~~~~~~g 401 (421)
++++++|...|+.++..++++|..+|+++.+++++|++++..+.|++|+++|+|.+++++++. + +...++..+.+|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 235677999999999999999999999999999999999999999999999999988873221 1 125578899999
Q ss_pred HHHHHHHHHHHH
Q 014634 402 VLIAVVGTYVSL 413 (421)
Q Consensus 402 ~~~~~~g~~~si 413 (421)
+++++.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.9e-48 Score=375.89 Aligned_cols=382 Identities=16% Similarity=0.168 Sum_probs=308.9
Q ss_pred CCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc----CCC-C-------CCH
Q 014634 29 TSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL----DSN-I-------KSY 95 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~----~~~-~-------~s~ 95 (421)
.++++..++++++++..+|.|+|+||++|+++||+ |.+.+++.+.++.|+.+++.+++.+ +++ . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 56899999999999999999999999999999999 9999999999999999999986432 211 1 267
Q ss_pred HHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCCh
Q 014634 96 PDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSL 175 (421)
Q Consensus 96 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~ 175 (421)
.|+++..+||+++.+.......++++.|+.|.+..++.+..+-... +.+.+++++.++..|++++|+++.
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~----------~~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL----------DKRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc----------CCCeEEeehHHHHHHHHHccCHHH
Confidence 8899999999999999999999999999999998887766552111 233566677888888899999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccccccccc-cccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHH
Q 014634 176 LSYVSASGVLASIITLGSIFSTGAFDGVGFHR-KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVC 254 (421)
Q Consensus 176 l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 254 (421)
++++|.+++.++++....+.......+..... ...+.++..++.++++++|||+||..+|+++++||||+++++....+
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~ 272 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAA 272 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHH
Confidence 99999999887665433333222222111110 01122334566777789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcchhh--hhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccc-cCCCCc
Q 014634 255 FFLCTFIYASMAVFGYLMFGSEVQS--QITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQ-YSKRPY 331 (421)
Q Consensus 255 ~~~~~~~y~~~~~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~-~~~~~~ 331 (421)
...++..|+.+++.||+.|||++++ +.+.|+|++.+ ..+++.+++++++.+||+++.|+.+..|+....+ .++...
T Consensus 273 ~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~ 351 (473)
T PLN03074 273 TLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICL 351 (473)
T ss_pred HHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHH
Confidence 9999999999999999999998764 45667886654 4677888899999999999999999999886543 334456
Q ss_pred eehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc--------------cccchhHHHHHHH
Q 014634 332 SLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAY--------------RRHGCEMMAILGI 397 (421)
Q Consensus 332 ~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~--------------~~~~~~~~~~~~~ 397 (421)
|.+.|+.+++.++++|..+|+|+.+++++||++++.+++++|+++|++.++++ +++++..+.|+.+
T Consensus 352 r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i 431 (473)
T PLN03074 352 RALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFV 431 (473)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHH
Confidence 89999999999999999999999999999999999999999999999876543 0123346889999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhC
Q 014634 398 VSLA-VLIAVVGTYVSLVQIIGHYV 421 (421)
Q Consensus 398 ~~~g-~~~~~~g~~~si~~l~~~~~ 421 (421)
++++ ++..+.|+|.|+++++++|+
T Consensus 432 iv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 432 VVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred HHhhhhHhhccchHHHHHHHHHhhh
Confidence 9864 44468999999999998874
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-43 Score=334.22 Aligned_cols=387 Identities=24% Similarity=0.398 Sum_probs=329.1
Q ss_pred CCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 28 RTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
.+++.|...+++++.|+++|+|++++|++|++.|.+ |++++.+++..+.++.+++.++..+. +.++|+++++..+|+.
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~~ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GERTYSSLGDLIFGKL 80 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CCCCHHHHHHHHcCCC
Confidence 457889999999999999999999999999999988 99999999999999999999998876 4459999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc--ccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVG--GLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
++............| +++|+++.+|.+..+........+ .++.+++..+++....+++|+++.|+++.+++.|.++.
T Consensus 81 g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~ 159 (411)
T KOG1305|consen 81 GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSL 159 (411)
T ss_pred ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 966666666666656 699999999999966554432211 11233443357778899999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccc----ccccccccCchhhhhhhhhhccccccchhhHHhhhhcc--ccchhHHHHHHHHH
Q 014634 185 LASIITLGSIFSTGAFDGVGFH----RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK--HQFSHVLLVCFFLC 258 (421)
Q Consensus 185 ~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p--~~~~~~~~~~~~~~ 258 (421)
.++++.+..+.+.....+.... ..+....+++.+.++++++|||.||+|+.++++||||| +|+.++...+...+
T Consensus 160 ~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~ 239 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILA 239 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 9999999888888766432011 11222233589999999999999999999999999999 56899999999999
Q ss_pred HHHHHHHHhHHHHhhhcchhhhhhhhcCCCchh------hHHHHHHHHHhhhhhhhcccchHHHHHHHhccccc-----C
Q 014634 259 TFIYASMAVFGYLMFGSEVQSQITLNLPTTKLS------SRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQY-----S 327 (421)
Q Consensus 259 ~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~------~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-----~ 327 (421)
.++|...|.+||+.|||++.+|++.++++.+-. ....+..+.++.+.++|+..+|+|..+++...+.+ .
T Consensus 240 ~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~ 319 (411)
T KOG1305|consen 240 TLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSF 319 (411)
T ss_pred HHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCc
Confidence 999999999999999999999999999876433 35778888889999999999999999988776433 3
Q ss_pred CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHH
Q 014634 328 KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVV 407 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 407 (421)
++.+|...+..+...+.+.|+.+|+++.++.++|++++..++|++|+++|++..|+ +.+++...+....+|+.....
T Consensus 320 s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~---~~~~~~~~~~~~~~~~~~~i~ 396 (411)
T KOG1305|consen 320 SGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK---KSREPLGALIFLILGVLLSII 396 (411)
T ss_pred cceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc---ccccchHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999988776 457888999999999999999
Q ss_pred HHHHHHHHHHhh
Q 014634 408 GTYVSLVQIIGH 419 (421)
Q Consensus 408 g~~~si~~l~~~ 419 (421)
|+..-+.++..+
T Consensus 397 ~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 397 GVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-43 Score=311.41 Aligned_cols=385 Identities=24% Similarity=0.374 Sum_probs=339.3
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCCHHHH
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDS-------NIKSYPDI 98 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~-------~~~s~~~l 98 (421)
.+.+.|++.+|+..|+.|++-|.=+++||+|..-.||.++.+++..+.++.|+..+|++|..+.. -+++|.++
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999976532 25799999
Q ss_pred HHHhcCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhH
Q 014634 99 GDRAFGRN-GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLS 177 (421)
Q Consensus 99 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~ 177 (421)
++.+++|. |+..+.+.+.+-....|+.|.+..+|.+++-+|....+ .+-|++++.+.++|.+++|+++..+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHH
Confidence 99999887 55899999999999999999999999999887765543 3367788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc--ccccccccccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHH
Q 014634 178 YVSASGVLASIITLGSIFSTGAF--DGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCF 255 (421)
Q Consensus 178 ~~s~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 255 (421)
++|++..+.-+.+-++++.+... .++.+..-.-..|..+++.++++++|+|..|...|.+...|++|.++...+.++-
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsH 342 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSH 342 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHH
Confidence 99999998888776655544432 3555555444667788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhccccc---------
Q 014634 256 FLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQY--------- 326 (421)
Q Consensus 256 ~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~--------- 326 (421)
+...++-..+|..||++|+++++..+++|+|+..+ ..+.++++++..+.|||+-++..++.+|+-+....
T Consensus 343 IAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsf-k~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 343 IAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSF-KILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHHheeeeechhhHHHHhcCCCccch-hhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 99999999999999999999999999999998765 44677888899999999999999999999775321
Q ss_pred ----CCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHHHHHHH
Q 014634 327 ----SKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAV 402 (421)
Q Consensus 327 ----~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~g~ 402 (421)
+-|-+-...|..++..+.+.|+.+|.+..+++++|++.+.+++|++|+++|++++.++ ....++..+..++.+|+
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G~ 500 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMGC 500 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEee
Confidence 1234567889999999999999999999999999999999999999999999998876 67788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 014634 403 LIAVVGTYVSLVQIIGHY 420 (421)
Q Consensus 403 ~~~~~g~~~si~~l~~~~ 420 (421)
.+++.|.|-|...++++|
T Consensus 501 ~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 501 SVCVSGVYFSSMELIRAI 518 (524)
T ss_pred eEEEEeEehhhHHHHHHH
Confidence 999999999999999876
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-33 Score=268.11 Aligned_cols=382 Identities=18% Similarity=0.191 Sum_probs=296.2
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCHHHHHHHhc
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNI-KSYPDIGDRAF 103 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~~~l~~~~~ 103 (421)
+..+++.+..+.+.++.++++|+|+|++|++++..|+. +++++++.+..+.++++++.|+..+.++. .++.+++++.+
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 35567888999999999999999999999999999998 99999999999999999999998887666 49999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
||+++++.++.+.+.+++.+.+|.+..++.+++++++.....+ ..+....++++.++.++++.++...++..+.+.
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~ 158 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLV 158 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999886443211 235566777778888899999999999999998
Q ss_pred HHHHHHHHHhhhhcccccccccc--cccc-ccccCchhhhhhhhhhccccccchhhHHhhhhccc-c-chhHHHHHHHHH
Q 014634 184 VLASIITLGSIFSTGAFDGVGFH--RKGT-LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKH-Q-FSHVLLVCFFLC 258 (421)
Q Consensus 184 ~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~-~~~~~~~~~~~~ 258 (421)
...+.+.++...+.....+...- .+.. ..+|..+..++|+++|||.+|+++|++.+|||+++ + .+|+...+..+.
T Consensus 159 ~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~ 238 (415)
T COG0814 159 FGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIA 238 (415)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHH
Confidence 88888777766666543211111 1112 36778899999999999999999999999999873 4 999999999999
Q ss_pred HHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhh-------------HHHHHHHHHhhhhhhhcccchHHHHHHHhccc-
Q 014634 259 TFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSS-------------RVAIYTTLVNPIAKYALMVTPVVNTIKMRFST- 324 (421)
Q Consensus 259 ~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~-------------~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~- 324 (421)
.++|..+++.+|..+|+++.++++.++++++... .....+-.+.+.+||--.....+|..++.+.+
T Consensus 239 ~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~ 318 (415)
T COG0814 239 LVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS 318 (415)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence 9999999999999999999999999997764322 22333334444555555555566666666653
Q ss_pred ccC-CCCc-----eehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHHH
Q 014634 325 QYS-KRPY-----SLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIV 398 (421)
Q Consensus 325 ~~~-~~~~-----~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~ 398 (421)
+.+ +|.+ ...........+...+...+..+.+.+.+|+.....+.++.|...+.|....+ +++.++...++++
T Consensus 319 ~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~-~~~g~~~~~~~v~ 397 (415)
T COG0814 319 NSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK-VYGGNFLLLLLVL 397 (415)
T ss_pred cCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee-ecCCCchhHHHHH
Confidence 111 1111 22333444445556666667777788888888888888888888777666554 2333236788889
Q ss_pred HHHHHHHHHHHHHH
Q 014634 399 SLAVLIAVVGTYVS 412 (421)
Q Consensus 399 ~~g~~~~~~g~~~s 412 (421)
.+|+..++.-.++.
T Consensus 398 ~~Gi~~~~~~~~~~ 411 (415)
T COG0814 398 LFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887666544
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.97 E-value=1.3e-27 Score=228.76 Aligned_cols=368 Identities=17% Similarity=0.199 Sum_probs=276.7
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccch
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGR 108 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~ 108 (421)
++.+.+++++.+.++.+|+|+|+||.+.+..|+. +.+.+++++..+.+++.++.|...+.++..++.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 4668899999999999999999999999999998 999999999999999999999988877899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH
Q 014634 109 IIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI 188 (421)
Q Consensus 109 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 188 (421)
.+..+.+.+..+..+.+|....++.++++++...... .+ +.....++.++...+. ..+.+...+++..-+..++
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~----~~-~~~~~~~f~~i~~~iv-~~g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTD----LS-PWLSSLLFTIIFGGIV-YFGTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC----Cc-HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987665311 11 1122222333322222 2244456666655555554
Q ss_pred HHHHhhhhcccccccccc----ccccccccCchhhhhhhhhhccccccchhhHHhhhh-ccccchhHHHHHHHHHHHHHH
Q 014634 189 ITLGSIFSTGAFDGVGFH----RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMK-KKHQFSHVLLVCFFLCTFIYA 263 (421)
Q Consensus 189 ~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~ 263 (421)
..+.........+ .+.+ .+....+|...+.++|+.++||..|+++|++.+.++ |+||.+|++..+..+..++|+
T Consensus 155 ~~~~~l~~~~~p~-~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl 233 (394)
T PF03222_consen 155 ISFIILVVYLIPH-WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYL 233 (394)
T ss_pred HHHHHHHHHHhhh-cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333221 1111 122356778889999999999999999999999998 568999999999999999998
Q ss_pred HHHhHHHHhhhcc-----------hh--hhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccCCCC
Q 014634 264 SMAVFGYLMFGSE-----------VQ--SQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRP 330 (421)
Q Consensus 264 ~~~~~gy~~fg~~-----------~~--~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 330 (421)
+.-.........+ .. ...+.+..++++...+...+-..++.+||--....++|.+++.++. ++++.
T Consensus 234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~-~~~~~ 312 (394)
T PF03222_consen 234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL-KNNSS 312 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Ccccc
Confidence 7655443322111 11 1223344455666667777788899999999999999999999876 33344
Q ss_pred ceehhHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccch----hHHHHHHHHHHHHHHH
Q 014634 331 YSLLISTGFVISTVIVALVVPF-FGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGC----EMMAILGIVSLAVLIA 405 (421)
Q Consensus 331 ~~~~~~~~~~~~~~~ia~~~~~-~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~----~~~~~~~~~~~g~~~~ 405 (421)
.|........++++++|...|+ |...+++.| ...+++..++|+++.+|.|+++++..+ .+.....++.+|++..
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 5666777788889999999987 899999999 888999999999999999877643322 3555566666666554
Q ss_pred H
Q 014634 406 V 406 (421)
Q Consensus 406 ~ 406 (421)
+
T Consensus 392 i 392 (394)
T PF03222_consen 392 I 392 (394)
T ss_pred H
Confidence 3
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=6.5e-26 Score=214.81 Aligned_cols=372 Identities=15% Similarity=0.136 Sum_probs=275.9
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGR 105 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~ 105 (421)
.++++.+...+.+.+.++.||+|+|++|.+.+..|+. +.+++++++..+.++..++.|+..+.++..++.+++|+.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 4678899999999999999999999999999999999 999999999999999999999988777889999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
.++.+..+.+.+..++.+.+|....++.+++.+++...+.+ ++.-.+++.++...+.. .+.+...+++..-+.
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~------~~~~~llF~~~~~~iv~-~gt~~vd~~n~~l~~ 158 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVP------ARAAGFGFALLVAFVVW-LSTKAVSRMTAIVLG 158 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998875321111 12333344444444443 355666666665555
Q ss_pred HHHHHHHhhhhccccccccc----cc-cccccccCchhhhhhhhhhccccccchhhHHhhhhc-cccchhHHHHHHHHHH
Q 014634 186 ASIITLGSIFSTGAFDGVGF----HR-KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKK-KHQFSHVLLVCFFLCT 259 (421)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~~~~ 259 (421)
.++..++..+.....+ .+. +. .....++..++.++|++.+||..|+++|++.+.+++ ++|.+|++..+..+..
T Consensus 159 ~~i~~f~~~~~~l~~~-i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Ipl 237 (414)
T PRK10483 159 AKVITFFLTFGSLLGH-VQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMAL 237 (414)
T ss_pred HHHHHHHHHHHHHHhh-cCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 5544443332222111 111 11 111122445789999999999999999999999885 5899999999999999
Q ss_pred HHHHHHHhHHHHhhhcch------h----hhhhhh---cCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhccccc
Q 014634 260 FIYASMAVFGYLMFGSEV------Q----SQITLN---LPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQY 326 (421)
Q Consensus 260 ~~y~~~~~~gy~~fg~~~------~----~~il~~---~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 326 (421)
++|++.-..+....+++. + +..+.. ..++.+...+...+..+.+.+||--.....+|.+++.++.++
T Consensus 238 v~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~ 317 (414)
T PRK10483 238 ALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD 317 (414)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999987665555544221 0 111111 223334445566777778899999999999999999987654
Q ss_pred CCCCceehhHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCcccc----chhHHHHHHHHHHH
Q 014634 327 SKRPYSLLISTGFVISTVIVALVVPF-FGYLMALVGAFLSMTASVILPCLCYLKISGAYRRH----GCEMMAILGIVSLA 401 (421)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~----~~~~~~~~~~~~~g 401 (421)
+ +..|.....+..+++.++|...|+ |-..+++.|.. ..++.-++|+++.+|.||+..+. +-.+.....++.+|
T Consensus 318 ~-~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g 395 (414)
T PRK10483 318 S-AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFG 395 (414)
T ss_pred c-cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHH
Confidence 3 335666677888999999999998 99999999977 66788899999999999762122 22344445666666
Q ss_pred HHHHHHH
Q 014634 402 VLIAVVG 408 (421)
Q Consensus 402 ~~~~~~g 408 (421)
+...++-
T Consensus 396 ~~~i~~~ 402 (414)
T PRK10483 396 VGNALVH 402 (414)
T ss_pred HHHHHHH
Confidence 6655443
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.96 E-value=7.3e-26 Score=215.59 Aligned_cols=367 Identities=13% Similarity=0.105 Sum_probs=269.9
Q ss_pred chHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHH
Q 014634 33 SFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIV 111 (421)
Q Consensus 33 s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~ 111 (421)
+...+.+.+.++.+|+|+|+||.+.+..|+. +.+++++++..+.++.+++.|+..+.++..++.+++|+.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7788999999999999999999999999998 999999999999999999999877777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHH
Q 014634 112 SIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITL 191 (421)
Q Consensus 112 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~ 191 (421)
.+.+.+..+..+.+|....++.+.+.+++.... ..+.+ ...+.+.++.... ...+.+...+++..-+..++..+
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~----~i~~~-~~~l~F~~~~~~i-v~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTGI----SMSPT-AGVLLFTLVAGGV-VCVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC----CCChH-HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888877543211 01112 2222222222222 23344666666655554444333
Q ss_pred Hhhhhccccccccccccc-cccccCchhhhhhhhhhccccccchhhHHhhhhc-cccchhHHHHHHHHHHHHHHHHHhHH
Q 014634 192 GSIFSTGAFDGVGFHRKG-TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKK-KHQFSHVLLVCFFLCTFIYASMAVFG 269 (421)
Q Consensus 192 ~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~~~~~~y~~~~~~g 269 (421)
+........+ .+.+.-. .+.++..++.++|++.+||..|+++|++.+.+++ ++|.+|++..+..+..++|+..-..+
T Consensus 158 ~~~~~~l~p~-~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLALMMPH-IHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHHHHHh-cCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221111 1111100 0112224889999999999999999999999885 58999999999999999999887777
Q ss_pred HHhhhcchh-----h-----hhhhh---cCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccCCCCceehhH
Q 014634 270 YLMFGSEVQ-----S-----QITLN---LPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLIS 336 (421)
Q Consensus 270 y~~fg~~~~-----~-----~il~~---~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (421)
....+++.- + +.+.. ..++.+...+...+..+++.+||--.....+|.+.+.+.++++ +..|....
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~-~~~r~~~~ 315 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT-VGGRLQTG 315 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-ccCCchhe
Confidence 766653321 1 22222 2234455566777777889999999999999999998865433 33477778
Q ss_pred HHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc-cccch---hHHHHHHHHHHHHHHHHHH
Q 014634 337 TGFVISTVIVALVVPF-FGYLMALVGAFLSMTASVILPCLCYLKISGAY-RRHGC---EMMAILGIVSLAVLIAVVG 408 (421)
Q Consensus 337 ~~~~~~~~~ia~~~~~-~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~-~~~~~---~~~~~~~~~~~g~~~~~~g 408 (421)
....++++++|...|+ |....++.|. ..+++.+++|+++.+|.++++ .++.+ .+...+.++.+|++..+.-
T Consensus 316 ~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 316 LITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHH
Confidence 8889999999999987 8889999886 478999999999999998654 11222 5777888888888777543
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=2.7e-25 Score=210.39 Aligned_cols=370 Identities=14% Similarity=0.154 Sum_probs=268.2
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccch
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGR 108 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~ 108 (421)
+|.+.....+.+.+++||+|+|+||.+.+..|+. +.+++++++..+.++..++.|+..+.++..++.+++|+.+||.++
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 4447888999999999999999999999999999 999999999999999999999988888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH
Q 014634 109 IIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI 188 (421)
Q Consensus 109 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 188 (421)
.+..+.+.+..++.+.+|....++.+++.++.... .+.+ ++...+++.++..++.. .+.+...+.+..-+..++
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~----~~i~-~~~~~llF~~~~~~~v~-~gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNLG----YHAN-PRIVGICTAIFVASVLW-ISSLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc----CCCc-HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865211 0111 11223344444444443 344666666655554444
Q ss_pred HHHHhhhhcccccccccc---cccccc----ccCchhhhhhhhhhccccccchhhHHhhhhc-cccchhHHHHHHHHHHH
Q 014634 189 ITLGSIFSTGAFDGVGFH---RKGTLV----NWKGIPTSISLYAFCYCAHPVFPTLYTSMKK-KHQFSHVLLVCFFLCTF 260 (421)
Q Consensus 189 ~~~~~i~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~~~~~ 260 (421)
+.++..+.....+ .+.+ +..... .+..++.++|++.+||..|+++|++.+.+++ ++|.+|++..+..+..+
T Consensus 161 i~f~~~~~~l~~~-i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLv 239 (415)
T PRK09664 161 ISFVIVFGSFFFQ-VDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALV 239 (415)
T ss_pred HHHHHHHHHHhhc-ccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 4433322222111 1111 111111 1234788999999999999999999999885 48889999999999888
Q ss_pred HHHHHHhHHHHhhh-----------cchhhhhh--hhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC
Q 014634 261 IYASMAVFGYLMFG-----------SEVQSQIT--LNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS 327 (421)
Q Consensus 261 ~y~~~~~~gy~~fg-----------~~~~~~il--~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~ 327 (421)
+|++.-.+.....+ ++...-+. ..-.++.+...+...+..+.+.+||--.....+|.+.+.++.+++
T Consensus 240 iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~ 319 (415)
T PRK09664 240 IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS 319 (415)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88755333222111 11111111 111233455556667777888999999999999999999876543
Q ss_pred CCCceehhHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCcccc----chhHHHHHHHHHHHH
Q 014634 328 KRPYSLLISTGFVISTVIVALVVPF-FGYLMALVGAFLSMTASVILPCLCYLKISGAYRRH----GCEMMAILGIVSLAV 402 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~ia~~~~~-~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~----~~~~~~~~~~~~~g~ 402 (421)
+..|.....+..+++.+.+...|+ |-..+++.|.. ..++.-++|+++.+|.||+.... +-.+.....++.+|+
T Consensus 320 -~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~ 397 (415)
T PRK09664 320 -HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGI 397 (415)
T ss_pred -cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHH
Confidence 345666677888999999999998 99999999996 56889999999999999762112 234666667777777
Q ss_pred HHHHHH
Q 014634 403 LIAVVG 408 (421)
Q Consensus 403 ~~~~~g 408 (421)
+..++-
T Consensus 398 ~ii~~~ 403 (415)
T PRK09664 398 TVILCW 403 (415)
T ss_pred HHHHHH
Confidence 666543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=3.1e-26 Score=221.23 Aligned_cols=339 Identities=16% Similarity=0.176 Sum_probs=256.9
Q ss_pred HHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHHH
Q 014634 38 CFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMN 116 (421)
Q Consensus 38 ~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~~ 116 (421)
+..++++++|+|++++|..+++.|.. +++.+++.+.++.++..++.|...+.|+..++.+++++.+||+++++..+.+.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45578999999999999999998887 99999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhhh
Q 014634 117 IELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFS 196 (421)
Q Consensus 117 ~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~ 196 (421)
+.++..+.+|....++.+.++++...... . .+....++..++..+ ...++.+...+++.+.+...+..++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFP----W-SARAIVLIFTVLFGS-FVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCC----c-cHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876432210 1 122232333333333 34678899999998888777766555444
Q ss_pred ccccc-ccc-cccc-ccccccCchhhhhhhhhhccccccchhhHHhhhh-ccccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 014634 197 TGAFD-GVG-FHRK-GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMK-KKHQFSHVLLVCFFLCTFIYASMAVFGYLM 272 (421)
Q Consensus 197 ~~~~~-~~~-~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 272 (421)
....+ +.+ ..+. ..+.++.++..+++...++|.+|++++++.+|++ |+||.+|++..+..+++++|+++.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43322 111 1110 1123556788899999999988889999999997 558899999999999999999988777766
Q ss_pred hhcchhhhhh-------------hhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccCCCCceehhHHHH
Q 014634 273 FGSEVQSQIT-------------LNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGF 339 (421)
Q Consensus 273 fg~~~~~~il-------------~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (421)
.+.+.-.+.. .+...+.+...+...+..+.+.+|+.....+.+|.+.+.++++++ +.+|.....+.
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~~~~~~~~~~~ 315 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-KKGRFKTGLLT 315 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCchhhhhh
Confidence 6543222111 111112233445556667788899999999999999888876443 23356677788
Q ss_pred HHHHHHHHhhccchH-HHHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 340 VISTVIVALVVPFFG-YLMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 340 ~~~~~~ia~~~~~~~-~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
..++.++|...|+.. ..++..| ++++.+.+++|+++++|.||++
T Consensus 316 ~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 316 FLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999998855 8999999 7888999999999999988764
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.92 E-value=2.4e-22 Score=190.39 Aligned_cols=374 Identities=14% Similarity=0.122 Sum_probs=265.8
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCHHHHHHHhcC
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLD-SNIKSYPDIGDRAFG 104 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~~~l~~~~~G 104 (421)
.++.+..| ...+.++.+|+|+|+||-.....|.. +.+++++++..++++++.+.|...+. ++..++.+++++.+|
T Consensus 17 w~~~d~~W---~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG 93 (443)
T PRK13629 17 WRKSDTTW---TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFG 93 (443)
T ss_pred CccccchH---HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcC
Confidence 44555555 48899999999999999999999988 99999999999999999999986654 667899999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
|+++.+..+.+.+..+..+.+|.....+.+++++.+... .. .. .+....+++.+++.... ..+-+.+.+++..-+
T Consensus 94 ~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~-~~--~~-~r~l~slifv~~l~~iv-~~G~~~v~kv~~~Lv 168 (443)
T PRK13629 94 KTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLG-FA--PL-NRGFVALFLLLLMAFVI-WFGKDLMVKVMSYLV 168 (443)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cC--Cc-cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Confidence 999999999999999999999999999998887554421 10 01 13233333333333333 334466666665555
Q ss_pred HHHHHHHHhhhhcccc--ccccccccc-----ccccc---CchhhhhhhhhhccccccchhhHHhh----hh-----c--
Q 014634 185 LASIITLGSIFSTGAF--DGVGFHRKG-----TLVNW---KGIPTSISLYAFCYCAHPVFPTLYTS----MK-----K-- 243 (421)
Q Consensus 185 ~~~~~~~~~i~~~~~~--~~~~~~~~~-----~~~~~---~~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~-- 243 (421)
...+..++.......- +.....+.+ ...+. ..++.++|++++||..|+++|++... .+ |
T Consensus 169 ~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 169 WPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 4444443333322221 111111101 00011 23778999999999999999999887 43 3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchh-----h--hhhhh----cCCC--------chhhHHHHHHHHHhhh
Q 014634 244 KHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQ-----S--QITLN----LPTT--------KLSSRVAIYTTLVNPI 304 (421)
Q Consensus 244 p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~-----~--~il~~----~~~~--------~~~~~~~~~~~~i~~~ 304 (421)
++|.+|++..+..+..++|+...+.+..+.+++.- + +++.. +++. ++...+..++..+++.
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~ 328 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIF 328 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHH
Confidence 46788999999999999999888888887764331 1 21211 2221 3344455566667888
Q ss_pred hhhhcccchHHHHHHHhccc-----ccC---CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHH
Q 014634 305 AKYALMVTPVVNTIKMRFST-----QYS---KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLC 376 (421)
Q Consensus 305 ~s~pl~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~ 376 (421)
+||--.....+|.++..+.+ +++ ++..+.....++.+.++.++..-|++-.++.-.|+...+++.|++|...
T Consensus 329 TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~ 408 (443)
T PRK13629 329 KSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYA 408 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999988731 111 1222566677888899999999999999999999999999999999999
Q ss_pred HHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH
Q 014634 377 YLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTY 410 (421)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 410 (421)
-.|...-+ |+ +.+..++.+...|++......|
T Consensus 409 i~kvp~l~-~y-r~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 409 IRKAPSLA-KY-RGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHccHHHH-Hh-CCCchhHHHHHHHHHHHHHHHH
Confidence 88775543 22 2344688889999887654444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.91 E-value=4.3e-23 Score=197.23 Aligned_cols=358 Identities=11% Similarity=0.106 Sum_probs=255.8
Q ss_pred HHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHhcCccchhHHHHHH
Q 014634 38 CFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDS-NIKSYPDIGDRAFGRNGRIIVSIFM 115 (421)
Q Consensus 38 ~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~~~l~~~~~G~~~~~~~~~~~ 115 (421)
.+.+.++++|+|+|.+|...++.||. .++..++...++.++++.+.|.....+ +..++.|++++.|||+++.+..+.+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 78899999999999999999999998 556666666777888888888744433 4799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhh
Q 014634 116 NIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIF 195 (421)
Q Consensus 116 ~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~ 195 (421)
.+..+..+.+|....++.+++++.+...... ..+....+...+........+.+.+.+++.+-+...+..++.+.
T Consensus 89 ~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~-----p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 89 FFAIYPILLIYSVAITNDSASFLVNQLGTAP-----PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765432110 11223333333333344456888888888877766655554444
Q ss_pred hccccc-cc-ccc-ccccccccCchhhhhhhhhhccccccchhhHHh----hhh--c--cccchhHHHHHHHHHHHHHHH
Q 014634 196 STGAFD-GV-GFH-RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYT----SMK--K--KHQFSHVLLVCFFLCTFIYAS 264 (421)
Q Consensus 196 ~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~----~m~--~--p~~~~~~~~~~~~~~~~~y~~ 264 (421)
.....+ +. ... .+.....+.++..+++...+||.+|++++++.. +.+ | ++|.+|++..+..+..++|+.
T Consensus 164 ~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~ 243 (397)
T TIGR00814 164 LYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMF 243 (397)
T ss_pred HHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321 11 111 111122346789999999999999999999973 333 2 467789999999999999999
Q ss_pred HHhHHHHhhhcchhh-----h--hhh---hcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcc----cccC---
Q 014634 265 MAVFGYLMFGSEVQS-----Q--ITL---NLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFS----TQYS--- 327 (421)
Q Consensus 265 ~~~~gy~~fg~~~~~-----~--il~---~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~----~~~~--- 327 (421)
.-+.+....+++.-. | .+. |-.+.++...+...+..+.+.+||--+...++|.+++.+. .+++
T Consensus 244 ~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~ 323 (397)
T TIGR00814 244 FVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKIN 323 (397)
T ss_pred HHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccC
Confidence 988888887654321 1 121 1223344455566666778899999999999999999882 1111
Q ss_pred CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHHHHHHH
Q 014634 328 KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAV 402 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~g~ 402 (421)
++..+.....+..+.++.++..-|+.-.++.-.|+...+++.|++|...-.|...-+ |+ +.+..++.+...|+
T Consensus 324 ~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~-~~-~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 324 IRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK-KY-RGRISNVFVTVIGL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH-Hh-CCCcchheeEeeec
Confidence 122245666777788999999999999999988889999999999999988765433 11 12345666555553
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.84 E-value=2.1e-17 Score=162.70 Aligned_cols=238 Identities=14% Similarity=0.157 Sum_probs=166.5
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
+++|+.+.++++...+++++|+|++.+|..+++.|..+++.+++.++........+.|...+.|+........++.+||.
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 35789999999999999999999999998888888778888888888888888888998777888899999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHH-HHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVV-IIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
.+++..+.+++.......++.....+++..+++.... ....+.. +..+...-....++.+...+++.+...
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~ 154 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLS--------PVQICLATIGVLWLCTVANFGGARITGQISSVTVW 154 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999987776665555555555666655542111 1111211 222222333345666777766665554
Q ss_pred HHHHHHHhhhhcccc--ccccccccccccc---cCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHH
Q 014634 186 ASIITLGSIFSTGAF--DGVGFHRKGTLVN---WKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCT 259 (421)
Q Consensus 186 ~~~~~~~~i~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~ 259 (421)
..+..++.+...... +..+..+.-.+.+ +.++..++....|+|.|.+.+..+.+|+||| |+.||++..+..++.
T Consensus 155 ~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~ 234 (438)
T PRK10655 155 GVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAA 234 (438)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHH
Confidence 444433332222111 1111111101111 2356667888999999999999999999999 579999999999999
Q ss_pred HHHHHHHhHHHHh
Q 014634 260 FIYASMAVFGYLM 272 (421)
Q Consensus 260 ~~y~~~~~~gy~~ 272 (421)
++|++........
T Consensus 235 ~~Y~l~~~~~~~~ 247 (438)
T PRK10655 235 VIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHhC
Confidence 9999876654433
No 17
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.81 E-value=6e-17 Score=160.77 Aligned_cols=242 Identities=13% Similarity=0.143 Sum_probs=168.9
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHh-hcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYALAS-GGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSN-IKSYPDIGDRA 102 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~~~l~~~~ 102 (421)
++++|+.+.+++++..+++++|+|++.+|....+ +|.. .++.+++.+.........+.|...+.|+ .....+..++.
T Consensus 3 ~~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 3 EAKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG 82 (473)
T ss_pred cccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence 3457899999999999999999999999988775 4443 4566777777777778888898888888 78899999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHH-HHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSF-VVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
+||+.+++..+.++........++.....+++..+++..... ...... ..+...+..-....++.+...+++.
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~ 156 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG------NPVPSILGASVLLWVFTFLVLRGVRQAAFINT 156 (473)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999887766666666666666776666522111 011111 1122222233344677788777777
Q ss_pred HHHHHHHHHHHhhhhccc--cccccc--c--cc---ccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHH
Q 014634 182 SGVLASIITLGSIFSTGA--FDGVGF--H--RK---GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLL 252 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~--~~~~~~--~--~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 252 (421)
+.....+..++.++.... .+..+. + +. ....++..+..++....|+|.|.+....+.+|+||+|+.+|++.
T Consensus 157 ~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~ 236 (473)
T TIGR00905 157 ITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATV 236 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHH
Confidence 766555443333222211 111111 1 11 01112345667788899999999999999999999778999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhh
Q 014634 253 VCFFLCTFIYASMAVFGYLMF 273 (421)
Q Consensus 253 ~~~~~~~~~y~~~~~~gy~~f 273 (421)
.+..++.++|++.........
T Consensus 237 ~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 237 LGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 999999999998877654443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.81 E-value=1.3e-16 Score=156.67 Aligned_cols=240 Identities=13% Similarity=0.094 Sum_probs=168.9
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
+++|+.+.++.+...+++++|+|++.+|...++.|...++.+++.++........+.|...+.|+..+..+.+++ +||.
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 457899999999999999999999999999988887677777888888888888899988888888898899999 8999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA 186 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 186 (421)
.+++..+..+........++.....+++..+++....+ . ......+..+...-+...++.+..++++.+..+.
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~---~----~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP---I----PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh---H----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998776555555555555666666665432211 0 0111112222223334456667777776665554
Q ss_pred HHHHHHhhhhccccc-cc-ccc---ccccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHH
Q 014634 187 SIITLGSIFSTGAFD-GV-GFH---RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTF 260 (421)
Q Consensus 187 ~~~~~~~i~~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~ 260 (421)
.++.++........+ +. ... .+..+.++.++..++....|+|.|.+.+....+|+||| |+.+|++..+..++.+
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 443333222222111 01 000 01112334577888899999999999999999999999 6799999999999999
Q ss_pred HHHHHHhHHHHhhh
Q 014634 261 IYASMAVFGYLMFG 274 (421)
Q Consensus 261 ~y~~~~~~gy~~fg 274 (421)
+|++..+......+
T Consensus 234 lYil~~~~~~~~~p 247 (435)
T PRK10435 234 IYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHhcCC
Confidence 99988876655443
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.80 E-value=8.9e-17 Score=159.95 Aligned_cols=349 Identities=11% Similarity=0.116 Sum_probs=203.6
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGILSTPY-ALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
.+++.+|+.+.++..+..++++||+|++..|. +.+.+|..+++..++.+++.......+.|.....|...+..+.+++.
T Consensus 22 ~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 22 HEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred CchhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 33457889999999999999999999999986 56678876777888888888888899999988889999999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHH
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSAS 182 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 182 (421)
+||+.++++.+..++.............+..... .+... .. ..+...+...++.-....++.+...++...
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~~~-~~-------~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~ 172 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHY-WGAFG-GV-------PQWVFALAALTIVGTMNMIGVKWFAEMEFW 172 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCC-CC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876544433333333333321 11111 00 112222223333334445667777766665
Q ss_pred HHHHHHHHHHhhhhccc---cccccc--cc-----ccc-----ccccCchhhhhhhhhhccccccchhhHHhhhhcc-cc
Q 014634 183 GVLASIITLGSIFSTGA---FDGVGF--HR-----KGT-----LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQ 246 (421)
Q Consensus 183 ~~~~~~~~~~~i~~~~~---~~~~~~--~~-----~~~-----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 246 (421)
.....+..++.++..+. ..+.+. .. ... +.++.++..++....|+|.|.+.+....+|.||| |+
T Consensus 173 ~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~ 252 (499)
T PRK15049 173 FALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTM 252 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhH
Confidence 44333222222111110 111100 00 000 1122233455667899999999999999999999 56
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHhhhcc-h---hhhhhhhc--CCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHH
Q 014634 247 FSHVLLVCFFLCTFIYASMAVFGYLMFGSE-V---QSQITLNL--PTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKM 320 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~-~---~~~il~~~--~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 320 (421)
.||++..++..+.++|+..........+.+ . .++...-+ ...++...+.....++..+.+..-..+...+.+..
T Consensus 253 iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a 332 (499)
T PRK15049 253 VPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRS 332 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766544443321 1 11211111 11122223333334444444444333444333322
Q ss_pred hcc---------cccC-CCCceehh-HHHHHHHHHHHHhhcc--chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 321 RFS---------TQYS-KRPYSLLI-STGFVISTVIVALVVP--FFGYLMALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 321 ~~~---------~~~~-~~~~~~~~-~~~~~~~~~~ia~~~~--~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
.-. +.++ +.+.+.+. ..++.++..++....| .++.++++.+ .+..+.|++|.+.+++.+++
T Consensus 333 ~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 333 MAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 211 1111 12222222 2222222222222233 2666777744 45689999999999988764
No 20
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.79 E-value=6.8e-17 Score=154.90 Aligned_cols=336 Identities=13% Similarity=0.172 Sum_probs=223.6
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccch
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALAS-GGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGR 108 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~ 108 (421)
+|.|.+|.++.++++++|+|++.+|....+ +|-.+++..++.+.........+.+..+++|+ .+..|+.++.+||+.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-KNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhHHHH
Confidence 478999999999999999999999998776 44348888888888888888888888888765 4899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH
Q 014634 109 IIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI 188 (421)
Q Consensus 109 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 188 (421)
++..+....+............++.++.......+ .+...+..++..-....++.+...+++.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp----------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTP----------IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999888888777777777777777654321111 12333333333344456789999999988876665
Q ss_pred HHH-Hhhhhccccc-cccccccccccccCchhhhhh-hhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 014634 189 ITL-GSIFSTGAFD-GVGFHRKGTLVNWKGIPTSIS-LYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASM 265 (421)
Q Consensus 189 ~~~-~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~ 265 (421)
... +.+....... +.+.-.|..+.++.++..+.. ...++|.+.+......+++|||||.+|+...+..++.++|...
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 552 3332222111 121112333455666666554 8889999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhcchhhhh----h---hhcCCCchhh---HHHHHHHHHhhhhhhhcccchHHHHHHHhcccccCCCCceehh
Q 014634 266 AVFGYLMFGSEVQSQI----T---LNLPTTKLSS---RVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLI 335 (421)
Q Consensus 266 ~~~gy~~fg~~~~~~i----l---~~~~~~~~~~---~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (421)
.+.....+|.+..++. . ...+-.+... .+.........+.+.-...+...+.+++.++.++++. ...
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 306 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI---LIL 306 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch---hHH
Confidence 9999999986543321 1 1111112211 2223334456667777788888888888876554321 221
Q ss_pred HHHHHHHHHHHHhhccc-hHHH---HHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 336 STGFVISTVIVALVVPF-FGYL---MALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 336 ~~~~~~~~~~ia~~~~~-~~~v---~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
-.+. ..+.++.. |+ .+.. .+..+ ..+....+++|.++.+...-|
T Consensus 307 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 307 PVLM--VIFSISFF-PDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHHH--HHHHHHHc-cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23333333 43 3221 12222 223456678999877765443
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.79 E-value=2.5e-16 Score=155.29 Aligned_cols=241 Identities=12% Similarity=0.170 Sum_probs=162.7
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
+++|+.+.++++...+++++|+|++.+|...++.|...+..+++.++........+.|.....|+.....+.+++.+||.
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 46789999999999999999999999998888766545555666666666667778888778888888999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA 186 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 186 (421)
.+++..+..++.......+......++...+.+....+ .......+..+..+-....++.|...+++.+....
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 99999988887655554554444455555444322110 01111112222233333456777777777766655
Q ss_pred HHHHHHhhhhcccc--ccccccc-c--ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHH
Q 014634 187 SIITLGSIFSTGAF--DGVGFHR-K--GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTF 260 (421)
Q Consensus 187 ~~~~~~~i~~~~~~--~~~~~~~-~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~ 260 (421)
.++.++.+...... ++..... . ....++..+..++....|+|.|.+......+|+||| |+.+|++..+..++++
T Consensus 158 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v 237 (445)
T PRK10644 158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV 237 (445)
T ss_pred HHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHH
Confidence 54433333222211 1111110 0 001123345567788999999999999999999999 5799999999999999
Q ss_pred HHHHHHhHHHHhhh
Q 014634 261 IYASMAVFGYLMFG 274 (421)
Q Consensus 261 ~y~~~~~~gy~~fg 274 (421)
+|.+..+......+
T Consensus 238 ~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 238 CYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHhCCC
Confidence 99988876544443
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=99.79 E-value=3.3e-16 Score=154.66 Aligned_cols=236 Identities=12% Similarity=0.114 Sum_probs=164.7
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYA-LASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
++.+|+.+.++..+..+++++|+|++..|.. .+++|...++..++.+++.......+.|...+.|...+..+.+++.+|
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g 96 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWG 96 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 3577899999999999999999999999865 556786677788888889999999999998888899999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
|..+++..+..++.......+.....+.+++.+.+... . +...+..++..-....++.+..+++.....
T Consensus 97 ~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 97 PFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------T-WIWAAAFFIIINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------H-HHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 99999999998887766666666666666655443211 1 122222233333344566766666654443
Q ss_pred HHHHHHHHhh------hhcccccc--ccccc----c-ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhH
Q 014634 185 LASIITLGSI------FSTGAFDG--VGFHR----K-GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHV 250 (421)
Q Consensus 185 ~~~~~~~~~i------~~~~~~~~--~~~~~----~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~ 250 (421)
...+..++.+ .......+ .+.+. . ..+.+|.++..++....|+|.|.+.+....+|+||| |+.||+
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPra 245 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKA 245 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHH
Confidence 3322211111 11111000 00000 0 012345667889999999999999999999999999 568999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh
Q 014634 251 LLVCFFLCTFIYASMAVFGYLM 272 (421)
Q Consensus 251 ~~~~~~~~~~~y~~~~~~gy~~ 272 (421)
+..+...+.++|..........
T Consensus 246 i~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 246 VNQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 9999999999998755544333
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.78 E-value=2.5e-16 Score=156.17 Aligned_cols=347 Identities=12% Similarity=0.126 Sum_probs=209.6
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHH-hhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHhcCcc
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALA-SGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIK-SYPDIGDRAFGRN 106 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~-~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~-s~~~l~~~~~G~~ 106 (421)
|+.+.+++++..+++++|+|++.+|.... .+|.. .++.+++.++........+.|...+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 57899999999999999999999998765 46755 566677888888888888999888787754 8899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA 186 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 186 (421)
.+++..+..++.......++.....+.+..+++....+. ...........+..+-....++.+..++++.+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN-----NPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-----cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999887666666666666666655554332110 000111122222223333356777777777766655
Q ss_pred HHHHHHhhhhccc--ccccccc----cc-cc----ccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHH
Q 014634 187 SIITLGSIFSTGA--FDGVGFH----RK-GT----LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCF 255 (421)
Q Consensus 187 ~~~~~~~i~~~~~--~~~~~~~----~~-~~----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 255 (421)
.+..++.++.... .++.... +. .. ...+.++..++....|+|.|.+....+.+|.||||+.+|++..+.
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~ 235 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHHH
Confidence 5443332222111 1111111 00 00 111224557788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhcch----hhh----hhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHh-----c
Q 014634 256 FLCTFIYASMAVFGYLMFGSEV----QSQ----ITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMR-----F 322 (421)
Q Consensus 256 ~~~~~~y~~~~~~gy~~fg~~~----~~~----il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~-----~ 322 (421)
..+.++|.+..+..+...+++. +++ ...+.. +++...+.....+++.+.+..-......+..... +
T Consensus 236 ~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~l 314 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLM 314 (468)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999998887665544221 111 111221 1222333334444455555444443333333221 1
Q ss_pred ----cccc-CCCCceehhHHHHHHHHHH-HHhh-ccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 323 ----STQY-SKRPYSLLISTGFVISTVI-VALV-VPFFGYLMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 323 ----~~~~-~~~~~~~~~~~~~~~~~~~-ia~~-~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
.+.+ ++.+.+.+.-...+..... +... -+.++.+.++.+. ...+.|+++++.++|+++++
T Consensus 315 P~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 315 PKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred cHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 1111 1222333322222221111 1111 1446777776443 45789999999999987654
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.78 E-value=2.4e-16 Score=155.82 Aligned_cols=236 Identities=15% Similarity=0.141 Sum_probs=168.3
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTP-YALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP-~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+.+.+|+.+.++..+..+++++|+|++.+| .+.+.+|..+++..++.++........+.|...+.|+..+..+.+++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 456789999999999999999999999999 5667788767888888888888889999999888888899999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
||+.+++..+..++.....+.+.....++.++.+.+... .+...+..++..-.....+.+...++....
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP-----------LWLFSLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc-----------HHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 999999999999888777777777777777776553211 122222222233333455666666666554
Q ss_pred HHHHHHHHHhhhh------ccccccc---ccc---ccc--cccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccch
Q 014634 184 VLASIITLGSIFS------TGAFDGV---GFH---RKG--TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 248 (421)
Q Consensus 184 ~~~~~~~~~~i~~------~~~~~~~---~~~---~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~ 248 (421)
....+..++.++. ....... +.. +.. .+.++.++..++....|+|.|.+.+....+|+||| |+.|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 4433322211111 1110000 001 000 12233457888999999999999999999999999 5799
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHH
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYL 271 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~ 271 (421)
|++..+...+.++|++.......
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHee
Confidence 99998888889999886554443
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.76 E-value=8.7e-16 Score=150.97 Aligned_cols=243 Identities=14% Similarity=0.202 Sum_probs=175.3
Q ss_pred CCCcchHHHHHHHHHhhhhhhhchhHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccc
Q 014634 29 TSKTSFFKTCFNGVNALSGVGILSTPYALA-SGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNG 107 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~GiL~LP~~~~-~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~ 107 (421)
+|+.+.++.++..+++++|+|++.+|.... ..|...++.+++.++........+.|...+.|+..+..+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 588999999999999999999999997655 4565566677777777777888888988888888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccc----cc-chHHHHHHHHHHHhhhcccCCChhHHHHHH
Q 014634 108 RIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTI----GA-KQSFVVIIALIILPTVWLDNLSLLSYVSAS 182 (421)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~ 182 (421)
+++..+..++........+....++.+..+++....+.+.+.. +. ...+..+...+..-....++.+...+++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999988887778888888888887776532111111000 00 011122223333334446788888888887
Q ss_pred HHHHHHHHHHhhhhccccc--cccccccccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHH
Q 014634 183 GVLASIITLGSIFSTGAFD--GVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCT 259 (421)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~ 259 (421)
.....+..++.++...... ..+.+ +..+.++.++..++....|+|.|.+......+|+||| |+.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYT-PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcC-CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 7766665554433322211 11111 1122344567888999999999999999999999999 678999999999999
Q ss_pred HHHHHHHhHHHHh
Q 014634 260 FIYASMAVFGYLM 272 (421)
Q Consensus 260 ~~y~~~~~~gy~~ 272 (421)
++|++........
T Consensus 241 v~Yil~~~~~~~~ 253 (429)
T TIGR00909 241 LLYVLVAAVILGA 253 (429)
T ss_pred HHHHHHHHHHhcC
Confidence 9999887655543
No 26
>PRK11021 putative transporter; Provisional
Probab=99.76 E-value=3.1e-15 Score=145.98 Aligned_cols=229 Identities=15% Similarity=0.183 Sum_probs=158.1
Q ss_pred cchHHHHHHHHHhhhhhhhchhHHHHH-hhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhH
Q 014634 32 TSFFKTCFNGVNALSGVGILSTPYALA-SGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRII 110 (421)
Q Consensus 32 ~s~~~~~~~li~~~iG~GiL~LP~~~~-~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~ 110 (421)
.+.++++...+++++|+|++.+|.... .+|...++..++.++........+.|...+.|+..+....+++.+||+.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 367899999999999999999997554 5775577788888888888889999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHH
Q 014634 111 VSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIIT 190 (421)
Q Consensus 111 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~ 190 (421)
..+..+........+......+++..+++... .......+...+.+-+...++.+..++++....+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS---------WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC---------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99988765433333333344445544443211 011222222233333444567777777666544333322
Q ss_pred HHhhhhcccccccccc-ccccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHhH
Q 014634 191 LGSIFSTGAFDGVGFH-RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 191 ~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
+.........+..+.. .+..+.+|.++..++....|+|.|.+.+....+|+||| |+.||++..+..++.++|++..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111111111 11123456678889999999999999999999999999 679999999999999999998765
Q ss_pred H
Q 014634 269 G 269 (421)
Q Consensus 269 g 269 (421)
-
T Consensus 232 ~ 232 (410)
T PRK11021 232 V 232 (410)
T ss_pred H
Confidence 3
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.76 E-value=1e-15 Score=151.07 Aligned_cols=347 Identities=12% Similarity=0.086 Sum_probs=206.6
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPY-ALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
++.+|+.+.++..+..++++||+|++..|. +.+.+|...++..++.+.+.......+.|.....|...++.+.+++.+|
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g 85 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMS 85 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 356789999999999999999999999885 5566887566777778888888888899988888899999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
|..+++..+..++.............+.+++.+.+... . +......++.+-....++.+....+.....
T Consensus 86 ~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~-~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 86 PFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------Q-WIPALIAVALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------h-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999888766666666677777665544221 1 111122222222233455565555544333
Q ss_pred HHHHHHHHh-------hhhcccccc---cccccc-----ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccch
Q 014634 185 LASIITLGS-------IFSTGAFDG---VGFHRK-----GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 248 (421)
Q Consensus 185 ~~~~~~~~~-------i~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~ 248 (421)
...+..++. +......+. .+.++. ..+.++.++..++....|+|.|.+.+....+|+||| |+.|
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP 234 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLR 234 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHH
Confidence 222211111 111111110 001110 012335567789999999999999999999999999 6789
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcchh----hhhh---hhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHh
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYLMFGSEVQ----SQIT---LNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMR 321 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~----~~il---~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~ 321 (421)
|++..+...+.++|...........+.+.. ++.. .+... +....+....+++..+.+..-.++...+.+...
T Consensus 235 ~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 235 SAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988899998765544443332211 1111 11111 112223333444444444444444444444332
Q ss_pred ccc---------ccC-CCCceehh-HHHHHHHHHHHHhhccchHHHHHHhhhh--hhhhhHhhhhhHHHHHHhcCc
Q 014634 322 FST---------QYS-KRPYSLLI-STGFVISTVIVALVVPFFGYLMALVGAF--LSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 322 ~~~---------~~~-~~~~~~~~-~~~~~~~~~~ia~~~~~~~~v~~~~G~~--~~~~~~~ilP~l~~l~~~~~~ 384 (421)
-.+ .++ +.+.+.+. ..........+....|+-+.+++..-+. .+..+.++.+++.++|.++++
T Consensus 314 a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 314 AKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred HhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 111 12222221 1111222223333345444444433322 234788999999999988764
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.76 E-value=1.1e-15 Score=151.59 Aligned_cols=237 Identities=9% Similarity=0.056 Sum_probs=157.8
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHH-HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYA-LASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
+.+|+.+.++..+..+++++|+|++..|.. .+.+|.. .++..++.+++.......+.|...+.|+..++...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 468999999999999999999999999865 4567865 56677788888888888899988888888999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
|..+++..+..++.....+.......+..+..+.+.. + . +...+...+.+-+...++.+...+++....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~------~-~~~~~~~~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV----P------V-WPWCLLFCALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC----c------H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999888766555444444444443333211 0 1 111122222233344556666665554433
Q ss_pred HHHHHHHHhhhhcc------c--cccccc-c--cccccccc-----CchhhhhhhhhhccccccchhhHHhhhhcc-ccc
Q 014634 185 LASIITLGSIFSTG------A--FDGVGF-H--RKGTLVNW-----KGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQF 247 (421)
Q Consensus 185 ~~~~~~~~~i~~~~------~--~~~~~~-~--~~~~~~~~-----~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~ 247 (421)
...+..++.++..+ . ..+.+. + +.....+| .++..++....|+|.|.+.+....+|+||| |++
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 33222221111111 0 000000 0 00011122 236677788899999999999999999999 568
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 014634 248 SHVLLVCFFLCTFIYASMAVFGYLMFG 274 (421)
Q Consensus 248 ~~~~~~~~~~~~~~y~~~~~~gy~~fg 274 (421)
+|++..+..++.++|+...+......+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765444443
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.75 E-value=1.4e-15 Score=150.74 Aligned_cols=235 Identities=10% Similarity=0.144 Sum_probs=157.5
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPY-ALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++.+|+.+.++.....++++||+|++..|. +++++|...+..+++.+++.......+.|.....+...++.+++++.+
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLL 94 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 3458899999999999999999999999875 666788755666667777777777777887655556678889999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
||..+++..+..++.......+.....+.++..+.+... . +...+....+.-.....+.+..++++.+.
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~-~~~~~~~~~~~~~iN~~g~~~~~~i~~~~ 163 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------D-WVASLAVVLLLLSLNLATVKMFGEMEFWF 163 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999887655555555566666655443211 1 12122222233334456667777766554
Q ss_pred HHHHHHHHHhhhhccc------cccc-----cccc----cc-cccccCchhhhhhhhhhccccccchhhHHhhhhcc-cc
Q 014634 184 VLASIITLGSIFSTGA------FDGV-----GFHR----KG-TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQ 246 (421)
Q Consensus 184 ~~~~~~~~~~i~~~~~------~~~~-----~~~~----~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 246 (421)
....+..++.+++.+. .++. +..+ .. .+.++.++..++....|+|.|.+.+....+|+||| |+
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 4443332222221111 1000 0100 00 12334567889999999999999999999999999 56
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHH
Q 014634 247 FSHVLLVCFFLCTFIYASMAVFGY 270 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~y~~~~~~gy 270 (421)
.||++..+...+.+.|.+......
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHe
Confidence 899998777778888886665544
No 30
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.74 E-value=6.2e-16 Score=147.07 Aligned_cols=354 Identities=14% Similarity=0.136 Sum_probs=229.5
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHh-hcHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALAS-GGWL--SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGD 100 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G~~--g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~ 100 (421)
++.+.+||.+.+.++..++++++|+|++.-|....+ +|-+ +++.++++++++...+.+..|.....|+.+.......
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 445678999999999999999999999999987765 7654 7788889999999999999999887777788888888
Q ss_pred HhcCccchhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHH
Q 014634 101 RAFGRNGRIIVSIFMNIELYLVA-TGFLILEGDN-LENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSY 178 (421)
Q Consensus 101 ~~~G~~~~~~~~~~~~~~~~g~~-~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 178 (421)
++|||..++...+.-.+...... ..+...++++ ++.+++....+ . .....+....+..+-+....+++.-.+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p----~--~~~~lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVP----R--VASKLLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCc----h--HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999998888887666655554 6677777777 77776632211 0 011122222222222333345555555
Q ss_pred HHHHHHHHHHHHHHhhhhccccc---c-cc-c--c-ccccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchh
Q 014634 179 VSASGVLASIITLGSIFSTGAFD---G-VG-F--H-RKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSH 249 (421)
Q Consensus 179 ~s~~~~~~~~~~~~~i~~~~~~~---~-~~-~--~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 249 (421)
+..+...+.+..+..++..+.+. + .+ . + .+.+..+..++..++-...|||.|+..+-.+.+|+||| |.+|+
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~ 239 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH
Confidence 66666666666666665555442 1 11 1 1 22334555678899999999999999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcch--hhhhh-hhcC---CCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcc
Q 014634 250 VLLVCFFLCTFIYASMAVFGYLMFGSEV--QSQIT-LNLP---TTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFS 323 (421)
Q Consensus 250 ~~~~~~~~~~~~y~~~~~~gy~~fg~~~--~~~il-~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 323 (421)
++.+++.++++.|+++-+..+.+...+. .++.. ..+. -+++. ...-+.+.++.+.+..-.++...+.+..--.
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999886666553221 11111 1111 12222 2222334444445444444433333222111
Q ss_pred c--------ccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 324 T--------QYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 324 ~--------~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
+ ..+.+..--...........++.....|++.+++..+-.-.....+.+=+++++|.++++
T Consensus 319 eG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 319 EGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred ccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 1 011111111222333333444444556899999998888777788888899999988876
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.74 E-value=3.9e-15 Score=156.50 Aligned_cols=242 Identities=11% Similarity=0.115 Sum_probs=171.7
Q ss_pred CCCCCCcchHHHHHHH-HHhhhhhhhchh-HHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHH
Q 014634 26 DSRTSKTSFFKTCFNG-VNALSGVGILST-PYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL-DSNIKSYPDIGDR 101 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~l-i~~~iG~GiL~L-P~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~~~l~~~ 101 (421)
+.+.++.++++.++.- +.+++|+|++.- ++...++|.. +++.++++++++..+...+.+.... .++...-..+.++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 3456789999999988 999999998755 4777799977 8888999999999999999998775 6677888888999
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 102 AFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
.+|+..+..+.+..++.....+..|...+++++..+++..............+.+..+ .++++-+....+.+...++..
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i-~l~ll~~In~~Gvk~~ak~q~ 230 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTV-TVVVLLGISFAGMEWENKAQV 230 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHH-HHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999998888889999999999998877532210000001111222222 222222333557777777777
Q ss_pred HHHHHHHHHHHhhhhcccccccc-------------ccc---cccccccCchhhhhhhhhhccccccchhhHHhhhhcc-
Q 014634 182 SGVLASIITLGSIFSTGAFDGVG-------------FHR---KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK- 244 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p- 244 (421)
+.+++.++.++.+++.+.....+ +.+ +..+....++...++++.+||.|......+.+|+|||
T Consensus 231 vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~ 310 (953)
T TIGR00930 231 LFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQ 310 (953)
T ss_pred HHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 66665555444443322211000 000 0001111236777888888999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhH
Q 014634 245 HQFSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
|.+|+++..++.+++++|+++.+.
T Consensus 311 r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 311 KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999998764
No 32
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.73 E-value=3.3e-15 Score=150.24 Aligned_cols=356 Identities=11% Similarity=0.067 Sum_probs=216.6
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHHH--HhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYAL--ASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~--~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
+++.+|+.+.++.+...++.++|+|++.+|... ..+|...++.+++.++.+......+.|...+.|+..+.....++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 345789999999999999999999999999643 347866666777888888888889999888888888989999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc----cc---cccccccchHHHHHHHHHHHhhhcccCCCh
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAI----EV---GGLTIGAKQSFVVIIALIILPTVWLDNLSL 175 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~ 175 (421)
+||..+++..+..++.......+.....++++..++..... .. .......+.....+..+++.-....++.+.
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~ 182 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKE 182 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhH
Confidence 99999999999988877666666666666666665532111 00 000000111122222222333444678888
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccc-c-cccc-----c--cccccccCchhhhhhhhhhccccccchhhHHhhhhcc-c
Q 014634 176 LSYVSASGVLASIITLGSIFSTGAFD-G-VGFH-----R--KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-H 245 (421)
Q Consensus 176 l~~~s~~~~~~~~~~~~~i~~~~~~~-~-~~~~-----~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~ 245 (421)
.++++.+.....+..++.++..+... + .++. . +-.++++.++..+.....|+|.|.+.+....+|.||| |
T Consensus 183 s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r 262 (557)
T TIGR00906 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR 262 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence 88888777766655544444333321 1 1111 0 1112344567888999999999999999999999999 5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHhhhcc---hhhhhhhhc--CCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHH
Q 014634 246 QFSHVLLVCFFLCTFIYASMAVFGYLMFGSE---VQSQITLNL--PTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKM 320 (421)
Q Consensus 246 ~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~---~~~~il~~~--~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 320 (421)
+.|+++..++.+++++|.++.+.-....+.+ .+++....+ ...++...+.....+...+.+....++...+.+..
T Consensus 263 ~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 263 AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998876544433221 111111111 11222222222233333333333333333333322
Q ss_pred hccc--------ccCCCC-ceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 321 RFST--------QYSKRP-YSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 321 ~~~~--------~~~~~~-~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
.-.+ +-++|. ............+.+++.. .+++.+.++.. .+..+.|.+++...+.+|++
T Consensus 343 marDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 343 MARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 2111 111111 1122222222333344443 35677777643 34578899998888877744
No 33
>PRK10836 lysine transporter; Provisional
Probab=99.73 E-value=7.5e-15 Score=146.32 Aligned_cols=237 Identities=9% Similarity=0.061 Sum_probs=153.1
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPY-ALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
++.+|+.+.++..+..++++||+|++.+|. +.+++|.. .++.+++.+++.......+.|...+.|+..+....+++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 457789999999999999999999999996 56678876 6788889999999999999999998999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
|+..+++..+.+++................+..+.+.. + . +......++.+-.....+.+..+.+..+.
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~----~------~-~~~~~~~~~~~~~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT----P------G-WIWSALFLGVIFLLNYISVRGFGEAEYWF 159 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----c------h-HHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 99999999998776543333222222222232222211 1 1 11122222222233345555554443332
Q ss_pred HHHHHH------HHHhhhhccccccc------ccccc--ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccch
Q 014634 184 VLASII------TLGSIFSTGAFDGV------GFHRK--GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 248 (421)
Q Consensus 184 ~~~~~~------~~~~i~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~ 248 (421)
....+. .+..+...+...+. +++.. +...++..+..+.....|+|.|.+.+....+|+||| |+.|
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 222221 11111111111110 01100 001122334445556679999999999999999999 6789
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhh
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYLMF 273 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~~f 273 (421)
|++..++..+.++|...........
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999999999999998876544443
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.73 E-value=6.6e-15 Score=145.33 Aligned_cols=346 Identities=12% Similarity=0.123 Sum_probs=205.3
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYAL-ASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~-~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++.+|+.+.++..+..+++++|+|++..|... +++|...++..++.++........+.|...+.|...++.+.+++.+
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~ 86 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYW 86 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 335789999999999999999999999999654 4577546667778888888888889998888889999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
||..+++..+..++.....+.+.....++.++.+.++.. . +...+......-.....+.+...+++.+.
T Consensus 87 g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~-~~~~~i~~~~~~~lN~~gv~~~~~~~~~~ 155 (456)
T PRK10238 87 GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------T-WVSAAVFFVVINAINLTNVKVFGEMEFWF 155 (456)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999988887777777777777765543211 1 22222222233333345666666666655
Q ss_pred HHHHHHHHHhhhh------ccccccc--cccc----ccc-ccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchh
Q 014634 184 VLASIITLGSIFS------TGAFDGV--GFHR----KGT-LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSH 249 (421)
Q Consensus 184 ~~~~~~~~~~i~~------~~~~~~~--~~~~----~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~ 249 (421)
....+..++.++. ....... .... ... +.++.++..++....|+|.|.+......+|+||| |+.||
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr 235 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK 235 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH
Confidence 4444332221111 1110100 0000 000 1223355577888999999999999999999999 56999
Q ss_pred HHHHHHHHHHHHHHHHHhHHH--Hhhhcc--hhhhh---hhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHh-
Q 014634 250 VLLVCFFLCTFIYASMAVFGY--LMFGSE--VQSQI---TLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMR- 321 (421)
Q Consensus 250 ~~~~~~~~~~~~y~~~~~~gy--~~fg~~--~~~~i---l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~- 321 (421)
++..+.....+.|........ ....+- ..++. ..+... ++...+....+.+..+.+..-..+...+.+...
T Consensus 236 Ai~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~a 314 (456)
T PRK10238 236 ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLA 314 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888765433321 111110 01111 111211 222223333333343433333333333333221
Q ss_pred ----c----ccc-cCCCCceehhHHHHHH-HHHHHHhhcc--chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 322 ----F----STQ-YSKRPYSLLISTGFVI-STVIVALVVP--FFGYLMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 322 ----~----~~~-~~~~~~~~~~~~~~~~-~~~~ia~~~~--~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
. .+. +++.+.+.+.....+. +..++....| .++.+.++.+ .+..+.|.+|.+.+++.++++
T Consensus 315 rdg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 315 QQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred hCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1122223332222222 2222211223 3666666644 345789999999999987753
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.73 E-value=2e-14 Score=142.14 Aligned_cols=234 Identities=14% Similarity=0.136 Sum_probs=161.3
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYA-LASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++.+|+.+.++.++..+++++|+|++.+|.. .+.+|...++..++.++........+.|...+.|...+..+.+++.+
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~ 83 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENL 83 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 34577889999999999999999999999865 55677667788888888888888899999888888899999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASG 183 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~ 183 (421)
||..+++..+..++.............+.+...+.+... ...+ .+..++..-....++.+...++....
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~l~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 84 GPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIW-VLSVVLIICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHH-HHHHHHHHHHHHHccchhHHHHHHHH
Confidence 999999999998877666555555566666655543221 1122 22222233334456777777766544
Q ss_pred HHHHHHHHHhh-------hhcccccc-c--c----cccc-ccccccCchhhhhhhhhhccccccchhhHHhhhhccc-cc
Q 014634 184 VLASIITLGSI-------FSTGAFDG-V--G----FHRK-GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKH-QF 247 (421)
Q Consensus 184 ~~~~~~~~~~i-------~~~~~~~~-~--~----~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 247 (421)
....+..++.+ ......+. . + +++. ..+.++.++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~i 232 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHH
Confidence 43333222111 11111110 0 0 0100 1122334567788899999999999999999999995 58
Q ss_pred hhHHHHHHHHHHHHHHHHHhHH
Q 014634 248 SHVLLVCFFLCTFIYASMAVFG 269 (421)
Q Consensus 248 ~~~~~~~~~~~~~~y~~~~~~g 269 (421)
||++..+...+.++|.......
T Consensus 233 PrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 233 PRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888887765443
No 36
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.73 E-value=1.1e-15 Score=142.94 Aligned_cols=346 Identities=12% Similarity=0.171 Sum_probs=227.3
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhc-hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGIL-STPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL-~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++.+.+|..+.++.-+.-+++.||+|.+ +--.+.+.+|.--++..+++|.+...-++.+.|...++|..+|+.++++++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~ 86 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY 86 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 3445789999999999999999999954 667788889987778888999999999999999988889999999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHH-H--HHhhhcccCCChhHHH
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIAL-I--ILPTVWLDNLSLLSYV 179 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i--~~pl~~~~~~~~l~~~ 179 (421)
+|++.+++.++.+++.-...+.+.....+.+++..+|+.+. |...+... + ..-+...|....+.+.
T Consensus 87 lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~-----------Wv~al~~~~l~~~~NL~sVk~FGE~EfW 155 (462)
T COG1113 87 LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQ-----------WVFALAAVVLLLAVNLISVKVFGELEFW 155 (462)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877731 22122221 1 1122223333332221
Q ss_pred H---HHHHHHHHHHHHhhhhcccccccc----cccc-----ccccccCchhhhhhhhhhccccccchhhHHhhhhccc-c
Q 014634 180 S---ASGVLASIITLGSIFSTGAFDGVG----FHRK-----GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKH-Q 246 (421)
Q Consensus 180 s---~~~~~~~~~~~~~i~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~ 246 (421)
- .+..+..++.+...+....+.+.+ .++. --+.++.++..++.+..|||.|.|.+-.-..|-|||+ .
T Consensus 156 fAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ 235 (462)
T COG1113 156 FALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKA 235 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhH
Confidence 1 122222222222222222222111 1111 1256667889999999999999999999999999995 5
Q ss_pred chhHHHHHHHHHHHHHH-----HHHhHHHHhhhcchhhhhhhhcC--CCchhhHHHHHHHHHhhhhhhhcccchHHHHHH
Q 014634 247 FSHVLLVCFFLCTFIYA-----SMAVFGYLMFGSEVQSQITLNLP--TTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIK 319 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~y~-----~~~~~gy~~fg~~~~~~il~~~~--~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 319 (421)
.+|++..-..-..++|. ++.+..+-.++++..+ ...-+. .-++...+.++.+..+..++..--.+...+.+.
T Consensus 236 ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~ 314 (462)
T COG1113 236 IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLY 314 (462)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccceeEEEeechhhcccccccccchHHH
Confidence 67877766655666665 4444455444443322 222221 112233344444444555666666666666666
Q ss_pred Hhccccc---------CC--CCceehhHHHHHHHHHHHHhhccc--hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 320 MRFSTQY---------SK--RPYSLLISTGFVISTVIVALVVPF--FGYLMALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 320 ~~~~~~~---------~~--~~~~~~~~~~~~~~~~~ia~~~~~--~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
..-.+.+ |+ ...-.+.+.....++.++....|+ |+.+.+..+.. .+..+.+=.+.|+|++|.
T Consensus 315 ~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 315 SLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 6532211 11 122445556666677777777774 66666664443 456666778889998884
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.69 E-value=6.5e-14 Score=139.55 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=157.9
Q ss_pred CCCcchHHHHHHHHHhhhhhhhchhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHhcCc
Q 014634 29 TSKTSFFKTCFNGVNALSGVGILSTP-YALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDS-NIKSYPDIGDRAFGR 105 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~GiL~LP-~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~~~l~~~~~G~ 105 (421)
+|+.+.++..+..++.++|+|++..| .+.+++|.. .+...++.+.+.......+.|.....| ....|.+.+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 47899999999999999999999887 556678866 466677888888888888999888887 455899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
..++++.+.+++.............+..+..+.+... .. .+.. ...+..-+...++.+..++++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~-~~~~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN---------PA-VWIA-IFYVFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---------HH-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999888777777777777776654432111 01 1211 12222233345677777776655543
Q ss_pred HHHHHHHhhhh----cccccc--cc------ccccc-ccc-----ccCchhhhhhhhhhccccccchhhHHhhhhcc-cc
Q 014634 186 ASIITLGSIFS----TGAFDG--VG------FHRKG-TLV-----NWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQ 246 (421)
Q Consensus 186 ~~~~~~~~i~~----~~~~~~--~~------~~~~~-~~~-----~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 246 (421)
..+..++.++. ....+. .. +.++. ... .+.++..++....|+|.|.+......+|+||| |+
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 33222111111 100000 00 00000 010 13456778888999999999999999999999 67
Q ss_pred chhHHHHHHHHHHHHHHHHHhH
Q 014634 247 FSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
.+|++..+..++.++|++..+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987544
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.69 E-value=6.6e-14 Score=138.07 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=161.0
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
++.+|+.+.++.+...++.++|......+..++..|+. -.+..++.+.........+.|...+.|+..+....+++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 35678999999999999999984455667888889987 44555666666666677888888888888999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
|..+++..+..++........+....++++..+++... . +...+.....+-....++.+..++++....
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~-~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------G-WLAALVFYIVFIGINILGVGEAAKLEFVVT 151 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------h-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999888777777888888888877664321 1 122222222223344566676666665554
Q ss_pred HHHHHHHHhhhhcccc--ccccccc--cc-----cccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHH
Q 014634 185 LASIITLGSIFSTGAF--DGVGFHR--KG-----TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVC 254 (421)
Q Consensus 185 ~~~~~~~~~i~~~~~~--~~~~~~~--~~-----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~ 254 (421)
+..++.++........ +..+... .. .+..+.++..++....|+|.|++.+....+|+||| |+.+|++..+
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s 231 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGA 231 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHH
Confidence 4444332222211111 1000000 00 01122356677888899999999999999999999 6799999999
Q ss_pred HHHHHHHHHHHHhH
Q 014634 255 FFLCTFIYASMAVF 268 (421)
Q Consensus 255 ~~~~~~~y~~~~~~ 268 (421)
..++.++|......
T Consensus 232 ~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 232 ILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888876443
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.68 E-value=6.8e-14 Score=137.51 Aligned_cols=343 Identities=15% Similarity=0.116 Sum_probs=209.8
Q ss_pred cchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhH
Q 014634 32 TSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAAT-FYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRII 110 (421)
Q Consensus 32 ~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~ 110 (421)
+++++++...++.++|+|++..| .....|...++..++.+.+. ......+.|..++.|+..+..+..++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77777766666666666655 56777778887778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH-H
Q 014634 111 VSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI-I 189 (421)
Q Consensus 111 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~-~ 189 (421)
..+...+........+.....+.+...+.....+ +. .......+..++.......++.|..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDLNP---SP--WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTC---SH--HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccccccc---cc--chheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 9999999888888788888888887765321110 00 0112222223333333445677777777776665555 2
Q ss_pred HHHhhhhcccc---ccccc-----cccccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHH
Q 014634 190 TLGSIFSTGAF---DGVGF-----HRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFI 261 (421)
Q Consensus 190 ~~~~i~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~ 261 (421)
.++.++..... .+... .++..+..+.....++....|+|.|.+....+.+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 32222222211 11111 01222345556889999999999999999999999998 89999999999999999
Q ss_pred HHHHHhHHHHhhhcchhh---hh---h----hhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhccc-------
Q 014634 262 YASMAVFGYLMFGSEVQS---QI---T----LNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFST------- 324 (421)
Q Consensus 262 y~~~~~~gy~~fg~~~~~---~i---l----~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~------- 324 (421)
|.+.........+++..+ +. . +... +++...+......+..+.+.........+.+...-.+
T Consensus 234 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 312 (426)
T PF13520_consen 234 YILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWF 312 (426)
T ss_dssp HHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGG
T ss_pred Hhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhh
Confidence 999988777666543221 11 1 1111 1233333333334444444444444444444332211
Q ss_pred -ccCCCCceehhHHHHHHHHHHHH--h-hcc--chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 325 -QYSKRPYSLLISTGFVISTVIVA--L-VVP--FFGYLMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~ia--~-~~~--~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
+.+++.............+.++. . ..| +++.+.+... ....+.++++.+.+++.++++
T Consensus 313 ~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 313 AKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp GTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred hhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 11111111122222222222222 1 223 4666666533 345677888888887776665
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.68 E-value=4.2e-14 Score=139.22 Aligned_cols=329 Identities=12% Similarity=0.109 Sum_probs=199.5
Q ss_pred HHHhhhhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHHHHHH
Q 014634 41 GVNALSGVGILSTPY-ALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIEL 119 (421)
Q Consensus 41 li~~~iG~GiL~LP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~~~~~ 119 (421)
.++++||+|++..|. +.+++|...++..++.+++.......+.|...+.|+..+..+.+++.+||..+++..+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 468899999999986 6778887788888899999999999999998888899999999999999999999999998876
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhhhccc
Q 014634 120 YLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGA 199 (421)
Q Consensus 120 ~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~~~~ 199 (421)
...........+..+....+.. ......+..++..-+....+.+..+.+..+.....+...+.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGI-----------PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccC-----------cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555554444432211 11222222333333344566666666666555444333322222111
Q ss_pred c--cc-c--cc--c-----c--cccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHHHHHH
Q 014634 200 F--DG-V--GF--H-----R--KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTFIYAS 264 (421)
Q Consensus 200 ~--~~-~--~~--~-----~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~~y~~ 264 (421)
. .+ . .. . + ...+.++.++..++....|+|.|.+.+....+|+||| |+.+|++..+...+.++|++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00 0 0 0012344578889999999999999999999999999 46899999999999999998
Q ss_pred HHhHHHHhhhcchhh--------hhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcc---------ccc-
Q 014634 265 MAVFGYLMFGSEVQS--------QITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFS---------TQY- 326 (421)
Q Consensus 265 ~~~~gy~~fg~~~~~--------~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~---------~~~- 326 (421)
..+........+..+ ....... .++...+....+++..+.+..-..+...+.+...-. +.+
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLN-IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 766543333222111 1122222 222333333444444455554444444444433211 111
Q ss_pred CCCCceehhHHH-HHHHHHHHHhhcc--chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 327 SKRPYSLLISTG-FVISTVIVALVVP--FFGYLMALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~~ia~~~~--~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
++.+.+.+.... ......+.....| .++.++++.+... .+.|+++++.+++.+|+
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 122222222222 2222222222222 4677777766544 58899999999988764
No 41
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.68 E-value=5e-14 Score=140.99 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=160.4
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHH-HHhhcHHH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYA-LASGGWLS--LLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-~~~~G~~g--~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++.+|+.+.++++...+++++|+|++..|.. .+++|..| ++.+++.++........+.|.....|+........++.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~ 117 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV 117 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH
Confidence 4568899999999999999999999999865 45567543 35566777777778888899888888888999999999
Q ss_pred cCccchhHHHHHHHHHH-HHHHHHHHHHhhhhhhh-hcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHH
Q 014634 103 FGRNGRIIVSIFMNIEL-YLVATGFLILEGDNLEN-LFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVS 180 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~-~g~~~~y~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s 180 (421)
+||..+++..+..+... .+.+..+....++++.+ +.+....+ .+ ......+..++..-....++.+...+++
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--~~----~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--EW----AIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hH----HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999998887655422 23344444445555422 33221110 00 0112222222333334456777787777
Q ss_pred HHHHHHHHHHHHhhhhcccc---cc-ccccccc-----cccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhH
Q 014634 181 ASGVLASIITLGSIFSTGAF---DG-VGFHRKG-----TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHV 250 (421)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~---~~-~~~~~~~-----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~ 250 (421)
.+.....+..++.++..+.. .+ .+..++. ...++.++..++....|+|.|.+.+..+.+|+||| |+.||+
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrA 271 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIA 271 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHH
Confidence 76666555443332222211 11 1000110 11223457778899999999999999999999999 679999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhh
Q 014634 251 LLVCFFLCTFIYASMAVFGYLMF 273 (421)
Q Consensus 251 ~~~~~~~~~~~y~~~~~~gy~~f 273 (421)
+..+..++.++|++..+......
T Consensus 272 i~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 272 IIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999876554444
No 42
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.66 E-value=1.1e-13 Score=136.64 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=156.9
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHH-HhhcH-H-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYAL-ASGGW-L-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~-~~~G~-~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++.+|+.+.++++...++.++|+|++..|... +..|. . .+..+++.++........+.|.....|+..+.....++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 35678999999999999999999999999764 44553 3 556677777777888888888877777778888888899
Q ss_pred cCccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FGRNGRIIVSIFMN-IELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
+||..+++..+... .........+....++++....+... .......+..++.+-....++.+...+++.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~---------~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP---------LLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999888644 33333344555566666544332100 000111222222222334567777777776
Q ss_pred HHHHHHHHHHHhhhhccc--ccccccccccc-----ccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHH
Q 014634 182 SGVLASIITLGSIFSTGA--FDGVGFHRKGT-----LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLV 253 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~ 253 (421)
+.....+..++.++..+. .++.++..+.. ..++.++..++....|+|.|.+......+|+||| |+.+|++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 666555443332222111 11111111111 1123456778889999999999999999999999 568999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 014634 254 CFFLCTFIYASMAVFGY 270 (421)
Q Consensus 254 ~~~~~~~~y~~~~~~gy 270 (421)
++.+++++|.+......
T Consensus 235 ~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 235 SCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766543
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.64 E-value=4.6e-14 Score=132.97 Aligned_cols=285 Identities=15% Similarity=0.155 Sum_probs=210.5
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchh
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALAS-GGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRI 109 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~ 109 (421)
|+|..|....++.+++|.|++.+|....+ +| .|++..++.+.......++..+..+++ +.++..|+.++.+||+.+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~-p~~~l~~~~~~~~Gk~lg~ 78 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRF-PGKTLVEISEKLFGKWLGK 78 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHhCcHHHH
Confidence 67899999999999999999999998765 43 466666666666666666667766665 6699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHH
Q 014634 110 IVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASII 189 (421)
Q Consensus 110 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~ 189 (421)
+......++.+..........++.++..+-...+. +......++.......++++.+.+.+.+.....+.
T Consensus 79 ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~----------~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 79 IINLLYILYFLLISALVLREFSEFIKTYLLPETPI----------WVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCH----------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999888854333221 44444455555556688999999988777766666
Q ss_pred HHHhhhhccccc-cccccccccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhH
Q 014634 190 TLGSIFSTGAFD-GVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 190 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
..+.+......+ +...-.|..+.++.++.++.....+.|.+......+.+.+|+|+|.+|....+...++++|....+.
T Consensus 149 ~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 228 (320)
T PF03845_consen 149 LLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFI 228 (320)
T ss_pred HHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554444332 1222234456777889999889999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhhhhh-------hhcCCCchh---hHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC
Q 014634 269 GYLMFGSEVQSQIT-------LNLPTTKLS---SRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS 327 (421)
Q Consensus 269 gy~~fg~~~~~~il-------~~~~~~~~~---~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~ 327 (421)
....||++..++.. ...+-++.. -.+-........+.+.....+...+.+.+.++.+++
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 297 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDY 297 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999975433211 111111111 112233344566677777888888888888865544
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.57 E-value=5.8e-12 Score=125.32 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=175.3
Q ss_pred CCCCCCCCcchHH-HHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 24 NDDSRTSKTSFFK-TCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 24 ~~~~~~~~~s~~~-~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++++.+++.+.++ .....++.++|.|++.+|......+....+.+++.+.........+.|...+.|+...+.+..++.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 85 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRA 85 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhh
Confidence 3445667778888 889999999999999999888765522333356666666666778888877788889999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc-ccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFA-IEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
+||+.+++..+..++..............+.+..+++... ..... .......+......-+...++.+...++..
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP----LLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999888888888888887777766432 00000 011222222233333444677777777777
Q ss_pred HHHHHHHHHHHhhhhcccccccc--ccccc----cccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHH
Q 014634 182 SGVLASIITLGSIFSTGAFDGVG--FHRKG----TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVC 254 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~ 254 (421)
......+...+.+.......... .+... ....+..+..++....++|.|.+...+..+|+||| |+.+|++..+
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~ 241 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILS 241 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHH
Confidence 77766666555444433322111 11111 11222357788889999999999999999999999 6789999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhc
Q 014634 255 FFLCTFIYASMAVFGYLMFGS 275 (421)
Q Consensus 255 ~~~~~~~y~~~~~~gy~~fg~ 275 (421)
+..+.++|...........++
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 242 LLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHhCccH
Confidence 999999999998887777764
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.51 E-value=5.3e-11 Score=119.00 Aligned_cols=241 Identities=12% Similarity=0.084 Sum_probs=141.4
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhccCCC-CCCHHHHHHHhcC
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATF-YSGLLIKRCMDLDSN-IKSYPDIGDRAFG 104 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~~~~~-~~s~~~l~~~~~G 104 (421)
+++||.+.++.+...+++++|.+ .+|.++++.|..+++..++.+.+.. .....+.|.....|+ ........++.+|
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 44688999999999999999976 5688888888776666666665543 355678888777876 6899999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccccccc-ccccccccchHHHH--HHHHHHHhhhcccCCChhHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGD-NLENLFPNFAIE-VGGLTIGAKQSFVV--IIALIILPTVWLDNLSLLSYVS 180 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~i~~pl~~~~~~~~l~~~s 180 (421)
|+.+++..+..+................ ....++...... .+...........+ +..+...-....++.+..++++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~ 161 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVT 161 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999887765444333221111100000 000011111000 00000011111111 1122223334467788887777
Q ss_pred HHHHHHHHHH-----HHhhhhccccccc---ccc--c--ccccccc---CchhhhhhhhhhccccccchhhHHhhhhcc-
Q 014634 181 ASGVLASIIT-----LGSIFSTGAFDGV---GFH--R--KGTLVNW---KGIPTSISLYAFCYCAHPVFPTLYTSMKKK- 244 (421)
Q Consensus 181 ~~~~~~~~~~-----~~~i~~~~~~~~~---~~~--~--~~~~~~~---~~~~~~~~~~~faf~~~~~~~~i~~~m~~p- 244 (421)
.++....+.. ++..++.....+. +.. + +....++ .++..++....|+|.|.+.+....+|+|||
T Consensus 162 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~ 241 (496)
T PRK15238 162 SIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPE 241 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCC
Confidence 6544332211 1111111011100 000 0 0001122 235667788899999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHH
Q 014634 245 HQFSHVLLVCFFLCTFIYASMAVFG 269 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~~~~~g 269 (421)
|+.||++..+...+.++|.+..+..
T Consensus 242 ~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 242 KNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999865544
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.51 E-value=1.6e-10 Score=115.03 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=155.3
Q ss_pred CCCCCCCcchHHHHHHHHHhh-hhhhhchhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 25 DDSRTSKTSFFKTCFNGVNAL-SGVGILSTPY-ALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~-iG~GiL~LP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
+++.+|+.+.++.+..-++.+ +|.|+.++|. +..++|...+..+++.++........+.|...+.|........+++.
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~ 87 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRM 87 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 345788999999999999875 8999998875 55567764555566677777777888888888888889999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc--ccccccc-ccc--chHHHHHHHHHHHhhhcccCCChhH
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFA--IEVGGLT-IGA--KQSFVVIIALIILPTVWLDNLSLLS 177 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~--~~~~~~~-~~~--~~~~~~~~~~i~~pl~~~~~~~~l~ 177 (421)
+||..+++..+..++................+..+.+... ...+... ... +.....+..++..-+...++.|...
T Consensus 88 ~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~ 167 (475)
T TIGR03428 88 GGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMS 167 (475)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9999999999988877654444444444444433321110 0000000 000 1122222222333334456677777
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc---cccc--cccc--cccccc-CchhhhhhhhhhccccccchhhHHhhhhcc-ccch
Q 014634 178 YVSASGVLASIITLGSIFSTGAF---DGVG--FHRK--GTLVNW-KGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFS 248 (421)
Q Consensus 178 ~~s~~~~~~~~~~~~~i~~~~~~---~~~~--~~~~--~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~ 248 (421)
+++.+.....+..++.++..... ++.. ++.. ....++ ..+..+.....|+|.|.+....+.+|+||| |+.|
T Consensus 168 ~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iP 247 (475)
T TIGR03428 168 RVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAP 247 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhh
Confidence 77666554443333222221111 1000 0000 001111 124445666789999999999999999999 6789
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhh
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYLMFG 274 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~~fg 274 (421)
|++..+..++.++|.+..+......+
T Consensus 248 rai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 248 RTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999888777666555444433
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.51 E-value=8.6e-11 Score=117.25 Aligned_cols=242 Identities=9% Similarity=-0.010 Sum_probs=142.8
Q ss_pred CCCCCCcchHHHHHHHHHhh-hhhhhch-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNAL-SGVGILS-TPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~-iG~GiL~-LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++.+|+.+.++.+...++.+ ...|+.. .+.+.+++|.. .+...++.+++.......+.|...+.|+..+....+++.
T Consensus 8 ~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred ceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 34678899999888888844 1266654 44567778876 567788888888888889999988888889999999999
Q ss_pred cCc----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHH-HHHHHHHHHhhhcccCCChhH
Q 014634 103 FGR----NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSF-VVIIALIILPTVWLDNLSLLS 177 (421)
Q Consensus 103 ~G~----~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~pl~~~~~~~~l~ 177 (421)
+|+ ..++++.+..++.....+.+.....++.+........+. ..+..+..... +.+......-+....+.|...
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 875 556777777766666555555555555555433211110 00000111111 111122223333445566666
Q ss_pred HHHHHHHHHHHHHHHhhh---hcccccccc-----cccccccc-cc--C--chhhhhhhhhhccccccchhhHHhhhhcc
Q 014634 178 YVSASGVLASIITLGSIF---STGAFDGVG-----FHRKGTLV-NW--K--GIPTSISLYAFCYCAHPVFPTLYTSMKKK 244 (421)
Q Consensus 178 ~~s~~~~~~~~~~~~~i~---~~~~~~~~~-----~~~~~~~~-~~--~--~~~~~~~~~~faf~~~~~~~~i~~~m~~p 244 (421)
++..+..+..+...+.+. ......+.+ .++..... +| . .+..++....|+|.|.+......+|+|||
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP 246 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENP 246 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCCh
Confidence 666554433332222111 111000000 00000011 12 1 24445566779999999999999999999
Q ss_pred -ccchhHHHHHHHHHHHHHHHHHhH
Q 014634 245 -HQFSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 245 -~~~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
|+.+|++..+..+..+++.+..+.
T Consensus 247 ~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 247 EVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988777655444433
No 48
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.50 E-value=1.5e-12 Score=128.69 Aligned_cols=352 Identities=12% Similarity=0.087 Sum_probs=234.4
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchh-HHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCHHHHHHH
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILST-PYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNI-KSYPDIGDR 101 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~L-P~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~~~l~~~ 101 (421)
+.+.+|+.+.++..+.-+++++|+|++-. ..+.++.|.. -++..++.+.....+...+.|..-+.|.. .++..++++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~ 104 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYR 104 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeee
Confidence 34778999999999999999999998855 5778888877 66677788888899999999998888874 899999999
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---------ccccccccccccccchHHHHHHHHHHHhhhcccC
Q 014634 102 AFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLF---------PNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDN 172 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~ 172 (421)
..|+..++.+.+-+++..+..+.+.....+.+++.+. +..... .+. .-.+..+..+.++..-..-+
T Consensus 105 ~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~--~~~---~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 105 FVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPG--GWI---PDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCC--ccH---HHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999875 111100 000 00111122222222222345
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhccccccc--ccc------cccc--ccccCchhhhhhhhhhccccccchhhHHhhhh
Q 014634 173 LSLLSYVSASGVLASIITLGSIFSTGAFDGV--GFH------RKGT--LVNWKGIPTSISLYAFCYCAHPVFPTLYTSMK 242 (421)
Q Consensus 173 ~~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~--~~~------~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 242 (421)
.+....+..+-....+++..+++..+...+. ++. ++.. +..++++..++....|+|.|.+.+-...+|-|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 6666666666666666666566655544321 221 1111 34478899999999999999999999999999
Q ss_pred cc-ccchhHHHHHHHHHHHHHHHHHhHHHHhhh--c-chhhhh--------hhhcCCCchhhHHHHHHHHHhhhhhhhcc
Q 014634 243 KK-HQFSHVLLVCFFLCTFIYASMAVFGYLMFG--S-EVQSQI--------TLNLPTTKLSSRVAIYTTLVNPIAKYALM 310 (421)
Q Consensus 243 ~p-~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg--~-~~~~~i--------l~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 310 (421)
|| |..|+++..++..++++|++..+.--+.-. + +..++. -.+...-...+.+.+...++.++++-.-.
T Consensus 260 NP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~ 339 (554)
T KOG1286|consen 260 NPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSS 339 (554)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHH
Confidence 99 679999999999999999988774433321 1 011111 11122222333466666666777777777
Q ss_pred cchHHHHHHHhcccc--------cCCCCceehhHHHHHHHHHHHHhhcc-----chHHHHHHhhhhhhhhhHhhhhhHHH
Q 014634 311 VTPVVNTIKMRFSTQ--------YSKRPYSLLISTGFVISTVIVALVVP-----FFGYLMALVGAFLSMTASVILPCLCY 377 (421)
Q Consensus 311 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ia~~~~-----~~~~v~~~~G~~~~~~~~~ilP~l~~ 377 (421)
+++..+.+...-.+. -+++-+-+....+..+...+.++... .++.++++.|. +..+++..=++.|
T Consensus 340 ~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~ 417 (554)
T KOG1286|consen 340 LYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSH 417 (554)
T ss_pred hHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 777777776653221 12222223333333334444444432 25777777664 4567777777777
Q ss_pred HHHhcC
Q 014634 378 LKISGA 383 (421)
Q Consensus 378 l~~~~~ 383 (421)
++.|+.
T Consensus 418 i~~R~a 423 (554)
T KOG1286|consen 418 LRFRYA 423 (554)
T ss_pred eeeeec
Confidence 766544
No 49
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=6.1e-11 Score=113.89 Aligned_cols=346 Identities=12% Similarity=0.147 Sum_probs=226.2
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGIL-STPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL-~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
+.||+.......+.-++..||+|.+ +.-.+.+++|.. .++..++.+.+.+..+..+.|..-..|...++.+++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 3679999999999999999999965 778999999999 77788889999999999999998888877889999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhh--cccCCChhHH-HHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTV--WLDNLSLLSY-VSA 181 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~--~~~~~~~l~~-~s~ 181 (421)
|-.++...+.+++.-...+...++..+..++...++..+ ...|+.++.++++.+- -.|......+ +|.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~---------~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVP---------PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCC---------hHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999999999999999999999999998888877654411 1144444444333322 1344332221 222
Q ss_pred HH--HHHHHHHHHhhhhcccccccc------ccccc-cccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHH
Q 014634 182 SG--VLASIITLGSIFSTGAFDGVG------FHRKG-TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVL 251 (421)
Q Consensus 182 ~~--~~~~~~~~~~i~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~ 251 (421)
+= .+..++++..++..+...+.+ ++++. -..++.++...+-...|||.|.|.+---..|-+|| |.+||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 22 222222333333333322111 11111 14445677788888999999999999999999999 5689999
Q ss_pred HHHHHHHHHHHHHHHhH-HHH-hhhc-c---------hhhhhhhhcCC--CchhhHHHHHHHHHhhhhhhhcccchHHHH
Q 014634 252 LVCFFLCTFIYASMAVF-GYL-MFGS-E---------VQSQITLNLPT--TKLSSRVAIYTTLVNPIAKYALMVTPVVNT 317 (421)
Q Consensus 252 ~~~~~~~~~~y~~~~~~-gy~-~fg~-~---------~~~~il~~~~~--~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 317 (421)
.-...-..++|++.-++ |.+ .+.| + ..++....+.+ -.....+.+..+++++++.-.--++...+.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 98888888888754432 222 1222 0 11122222221 223556777777777777777677777777
Q ss_pred HHHhcccc----------cCCCCc-eehhHHHHHHHHHHHHhhcc--chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC
Q 014634 318 IKMRFSTQ----------YSKRPY-SLLISTGFVISTVIVALVVP--FFGYLMALVGAFLSMTASVILPCLCYLKISGA 383 (421)
Q Consensus 318 ~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~ia~~~~--~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~ 383 (421)
+...-.+. ++.++. ..+++.++..++++.+..-. -++-++++.|.. ..++.+-=++.|++.|+.
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~A 428 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRRA 428 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 76654322 222333 34444555555555554422 256666666643 345666667778776543
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.46 E-value=1.7e-10 Score=114.84 Aligned_cols=238 Identities=11% Similarity=0.132 Sum_probs=136.0
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCCHHHHHHHhcCccch
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATF-YSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGR 108 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~ 108 (421)
+|++.+..++..+.++++. -.+|.+ ++.|...++.+++.+++.. -......|.....|+........++.+|++.+
T Consensus 1 ~~~~~~~l~~~~~~~v~~~--~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSL--RGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred CcccHHHHHHHHHHHHHHh--hcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 3577777777777777664 444644 6788767777777766554 46677788877788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHH---HHHHHHHhhhcccCCChhHHHHHHHH-
Q 014634 109 IIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVV---IIALIILPTVWLDNLSLLSYVSASGV- 184 (421)
Q Consensus 109 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~pl~~~~~~~~l~~~s~~~~- 184 (421)
++..+..++........-.......+....+..... + ......+... +.....+-+...++.|..++++.+..
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~ 154 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-E--SLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGI 154 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-c--ccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 999988887654322221111122111111110000 0 0001112211 11122223345677777766665432
Q ss_pred HHHHHHHHhhhhcc----cccccc-cc----c-cccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHH
Q 014634 185 LASIITLGSIFSTG----AFDGVG-FH----R-KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLV 253 (421)
Q Consensus 185 ~~~~~~~~~i~~~~----~~~~~~-~~----~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~ 253 (421)
+..++..+.++..+ ...+.. .+ + .+...++.....+. .+.|+|.|.+.+....+|+||| |+.+|++..
T Consensus 155 ~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~ 233 (474)
T TIGR03813 155 VGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILI 233 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHH
Confidence 21121111111111 011110 00 0 00111233333333 4578999999999999999999 679999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhh
Q 014634 254 CFFLCTFIYASMAVFGYLMFG 274 (421)
Q Consensus 254 ~~~~~~~~y~~~~~~gy~~fg 274 (421)
+..++.++|++..+.-....+
T Consensus 234 ~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 234 AALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 999999999987665544444
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.36 E-value=2.1e-09 Score=107.43 Aligned_cols=232 Identities=10% Similarity=0.107 Sum_probs=131.6
Q ss_pred CCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhhccCC-CCCCHHHHHHHhcCc
Q 014634 28 RTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAA-TFYSGLLIKRCMDLDS-NIKSYPDIGDRAFGR 105 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~-~~~~~~~l~~~~~~~~-~~~s~~~l~~~~~G~ 105 (421)
+++|.+.++.++..+..+.+ +..+| .+++.|+-.+...++.+++ ..-......|.....+ +.......+++.+||
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~ 78 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGE 78 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCc
Confidence 35679999999888888864 56888 5777886555555554444 3345667778766554 678889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc-hHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAK-QSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
+.+++..+..++................+....... +. ..+.. .....+..+..+-+...++.+...+++.++.
T Consensus 79 ~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~--~~---~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~ 153 (507)
T TIGR00910 79 RFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP--AL---NEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGF 153 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--hh---ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999988777777654322222211111112111110 00 00011 1111122222333344566777766665543
Q ss_pred HHH-HHHHHhhh---hcccccccccccc----ccccccC--chhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHH
Q 014634 185 LAS-IITLGSIF---STGAFDGVGFHRK----GTLVNWK--GIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLV 253 (421)
Q Consensus 185 ~~~-~~~~~~i~---~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~ 253 (421)
... .+..+.++ ......+.+...+ ....++. +....+....|+|.|.+......+|+||| |+++|++..
T Consensus 154 ~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~ 233 (507)
T TIGR00910 154 FAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMIL 233 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHH
Confidence 222 11111111 1111111111100 0011222 23344455689999999999999999999 579999999
Q ss_pred HHHHHHHHHHHHHh
Q 014634 254 CFFLCTFIYASMAV 267 (421)
Q Consensus 254 ~~~~~~~~y~~~~~ 267 (421)
+..++.++|.+..+
T Consensus 234 ~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 234 LMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876444
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.27 E-value=4.9e-11 Score=118.87 Aligned_cols=231 Identities=13% Similarity=0.152 Sum_probs=155.4
Q ss_pred HHHHhhhhhhhc-hhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHHHH
Q 014634 40 NGVNALSGVGIL-STPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNI 117 (421)
Q Consensus 40 ~li~~~iG~GiL-~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~~~ 117 (421)
..+++++|.|++ ..+.+..++|.. .++..++.+++.......+.|..++.++..++.+++++.+||..+....+.+++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 346788999966 556788889986 777888888999999999999988888999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhhh--cccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhh
Q 014634 118 ELYLVATGFLILEGDNLENL--FPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIF 195 (421)
Q Consensus 118 ~~~g~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~ 195 (421)
.............+..++.. .++... .+.+.. .+..+..+++. .....+.+....+........+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~i~~~~~~-~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWGI--LIAIIFILLIT-LLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---cccccc--hhhhhhhhhhh-hhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 88777777776666666554 222221 111100 11122222222 22234555544443333333332222222
Q ss_pred hcc----ccccccccc-----c-------------ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHH
Q 014634 196 STG----AFDGVGFHR-----K-------------GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLL 252 (421)
Q Consensus 196 ~~~----~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~ 252 (421)
... ...+.+.+. + +...++.++..++....++|.|.+......+|.||| |++||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 222 111010000 0 112336789999999999999999999999999999 57899999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcc
Q 014634 253 VCFFLCTFIYASMAVFGYLMFGSE 276 (421)
Q Consensus 253 ~~~~~~~~~y~~~~~~gy~~fg~~ 276 (421)
.++..+.++|.+.....-...+.+
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCcc
Confidence 999999999998887666666543
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.95 E-value=2.1e-06 Score=82.92 Aligned_cols=246 Identities=9% Similarity=-0.007 Sum_probs=133.6
Q ss_pred CCCCCCCcchHHHHHHHHHhh---hhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 014634 25 DDSRTSKTSFFKTCFNGVNAL---SGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGD 100 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~---iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~ 100 (421)
+.+-+|..+.++.+..-.+.+ -|. .-++.+.....|.. -.-.+++.+........-+.|.....|...+..=-+.
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa 121 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAA 121 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHH
Confidence 345577777777665444322 221 12445555556654 2233566666777777778887777776666655555
Q ss_pred HhcCccchhHHHHH----HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhh--cccCCC
Q 014634 101 RAFGRNGRIIVSIF----MNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTV--WLDNLS 174 (421)
Q Consensus 101 ~~~G~~~~~~~~~~----~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~--~~~~~~ 174 (421)
..-+|+.+.+..+. ..+.......+-....++.+........++ ...+..+.+. +..++.+..+ ....-+
T Consensus 122 ~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~---y~~~~~~~~~-v~~ai~~v~~lln~~p~r 197 (550)
T KOG1289|consen 122 VLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPN---YEPTNYHQFG-VFEAILFVHGLLNSLPTR 197 (550)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCC---CcccceEeeh-HHHHHHHHHHHHhcCCcH
Confidence 55555554444443 333322222222222223333322222221 1111222222 2223333222 233446
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccc-c--ccccccc-------cccccccC----chhhhhhhhhhccccccchhhHHhh
Q 014634 175 LLSYVSASGVLASIITLGSIFSTGA-F--DGVGFHR-------KGTLVNWK----GIPTSISLYAFCYCAHPVFPTLYTS 240 (421)
Q Consensus 175 ~l~~~s~~~~~~~~~~~~~i~~~~~-~--~~~~~~~-------~~~~~~~~----~~~~~~~~~~faf~~~~~~~~i~~~ 240 (421)
.+.+++.+++...++.++...+... . ...+++. -....+|. .+..++-...+.+.|.....++.+|
T Consensus 198 ~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE 277 (550)
T KOG1289|consen 198 VLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH
Confidence 7777777777666554443322211 1 1111221 12244454 3445677788999999999999999
Q ss_pred hhcc-ccchhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 014634 241 MKKK-HQFSHVLLVCFFLCTFIYASMAVFGYLMFGS 275 (421)
Q Consensus 241 m~~p-~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 275 (421)
.||+ ++.||++..+..+..++=+.+-+.-..+-++
T Consensus 278 ~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 278 TKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9998 6789999999998888877777766666664
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.89 E-value=2.7e-08 Score=83.05 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=139.4
Q ss_pred HHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc-------------C--C--------
Q 014634 35 FKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL-------------D--S-------- 90 (421)
Q Consensus 35 ~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-------------~--~-------- 90 (421)
.-....+.|-++|.|.|++|.+|+.+||+ ++.++.+.++.++.+.-...+++.. . .
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 33456778999999999999999999998 9999999999998887777665411 0 0
Q ss_pred ---------------------------------CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014634 91 ---------------------------------NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENL 137 (421)
Q Consensus 91 ---------------------------------~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 137 (421)
......|++...|.|.+-.+..+.++++.+|-...|...+--...++
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 01244677778899999999999999999999998987766655554
Q ss_pred ccccccc-------cc---c----c-----ccccchHHHHHHH-HHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhhhc
Q 014634 138 FPNFAIE-------VG---G----L-----TIGAKQSFVVIIA-LIILPTVWLDNLSLLSYVSASGVLASIITLGSIFST 197 (421)
Q Consensus 138 ~~~~~~~-------~~---~----~-----~~~~~~~~~~~~~-~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~~ 197 (421)
....... ++ . | ..+..+.+++++. ++.+|+. +-++++-+++.++....-+......+..
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~~~~~g~~l 253 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWAAFILGISL 253 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHHhccchhhh
Confidence 3222110 00 0 0 1122344555444 4445777 4477777777777666666544433333
Q ss_pred cccc--cccccccccccccCchhhhhhhhhhccccccchhhHHhhhhcc
Q 014634 198 GAFD--GVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK 244 (421)
Q Consensus 198 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 244 (421)
+..+ .......++...+-++-+.++...|+|.+|++.|.....++.+
T Consensus 254 ~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 254 ATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 3221 0111112223444577788899999999999999988877755
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.74 E-value=4.9e-06 Score=75.40 Aligned_cols=216 Identities=21% Similarity=0.165 Sum_probs=139.4
Q ss_pred HHHHHHHHHhhhhhhhchhHHH---HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHH
Q 014634 35 FKTCFNGVNALSGVGILSTPYA---LASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIV 111 (421)
Q Consensus 35 ~~~~~~li~~~iG~GiL~LP~~---~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~ 111 (421)
.+-.+..+++++|+|.=+=--. |.+-|+-|....++++.+...++..+.+..++. +..+|.|..++.+||+..++.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHHHH
Confidence 4456777889999997665433 345566688888999999999999888887765 889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHH-HHHHHHHHhhhcccCCChhHHHHHHHHHHHHHH
Q 014634 112 SIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFV-VIIALIILPTVWLDNLSLLSYVSASGVLASIIT 190 (421)
Q Consensus 112 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~ 190 (421)
|..+.++.++.++.-+...++.+++.+.-.. ++- ++..+++....++++.+.+..++.+-+....+.
T Consensus 85 d~~iif~lf~~~vVM~AGags~~~e~~~lP~------------wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLLEEMFGLPY------------WIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHhCccH------------HHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 9999999999998888888777776543221 333 333444444445677888887777666555544
Q ss_pred HHhhhhcccccccccc---ccccccccCchhhhhhhhhhcc-ccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 014634 191 LGSIFSTGAFDGVGFH---RKGTLVNWKGIPTSISLYAFCY-CAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASM 265 (421)
Q Consensus 191 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~ 265 (421)
...+.....+.+.+.. .+....+|.. .+.+-..+.. .+.....++-++|++|+...+....+-.+.+++..+.
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~ 229 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLI 229 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHH
Confidence 3333322222111111 1222334422 1222222222 2344556777899998877766665555555444433
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.58 E-value=4.4e-05 Score=75.33 Aligned_cols=295 Identities=11% Similarity=-0.005 Sum_probs=159.7
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~--~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++|+.++++-+..-.+..+...-+.+...... .++. +++..++...+......+......+ ..-++..++|..|
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r--~Gl~~~v~sR~~F 86 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK--YGLPFPVLSRASF 86 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--hCCCcchhhhhhh
Confidence 444555777766666665555554444433333 2333 5555554444444444444443333 2356678899999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc--cc-cchHHHHHHHHHHHhhhcccCCChhHHHH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLT--IG-AKQSFVVIIALIILPTVWLDNLSLLSYVS 180 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~pl~~~~~~~~l~~~s 180 (421)
|++|..+..++..+...+=........++.+..+++...+...... .+ ......++...+..++......+......
T Consensus 87 G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~ 166 (442)
T TIGR00800 87 GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFE 166 (442)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999888888888888888777776655432210000 00 11122234445555544455555555555
Q ss_pred HHHHHHHHHHHHhhhhcccccc-cc--cccc---ccccccCchhhhhhhhh-hccccccchhhHHhhhhccccchhHHHH
Q 014634 181 ASGVLASIITLGSIFSTGAFDG-VG--FHRK---GTLVNWKGIPTSISLYA-FCYCAHPVFPTLYTSMKKKHQFSHVLLV 253 (421)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~-~~--~~~~---~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~~~~~~~ 253 (421)
..+.......+...++.....+ .. ...+ ........+..++...+ +.-..-.+.++..+.+|+|++-.+....
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~ 246 (442)
T TIGR00800 167 WLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFL 246 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHH
Confidence 5555444433333322221111 11 1111 11222234455544433 3335566889999999998877777888
Q ss_pred HHHHHHHHHHHHHhHHHHh----hhcchhh--hhhhhcCCCchhhHHHH------HHHHHhhh-hhhhcccchHHHHHHH
Q 014634 254 CFFLCTFIYASMAVFGYLM----FGSEVQS--QITLNLPTTKLSSRVAI------YTTLVNPI-AKYALMVTPVVNTIKM 320 (421)
Q Consensus 254 ~~~~~~~~y~~~~~~gy~~----fg~~~~~--~il~~~~~~~~~~~~~~------~~~~i~~~-~s~pl~~~~~~~~~~~ 320 (421)
++....+....+|+.+-.. +|+...+ +....+..... ....+ +++++..+ ..--...++....+..
T Consensus 247 ~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~-~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~ 325 (442)
T TIGR00800 247 ALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTY-AVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAA 325 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccch-hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 8888888888888877765 6654322 23333332211 11111 22222222 3455567777777777
Q ss_pred hccc
Q 014634 321 RFST 324 (421)
Q Consensus 321 ~~~~ 324 (421)
.+++
T Consensus 326 l~~~ 329 (442)
T TIGR00800 326 LLPK 329 (442)
T ss_pred hCcC
Confidence 7754
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.55 E-value=0.00011 Score=70.69 Aligned_cols=256 Identities=14% Similarity=0.071 Sum_probs=144.6
Q ss_pred HHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCCh
Q 014634 96 PDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSL 175 (421)
Q Consensus 96 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~ 175 (421)
..+++..||.++.++..+.+.+.+.|-.....+..++..... +..+ ..++.++..+++.-.+ +-+.+.
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~----------~~~~ili~g~l~~l~~-ifG~r~ 151 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLP----------VWAGILIIGVLMTLVT-IFGYRA 151 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCc----------HHHHHHHHHHHHHHHH-HHhHHH
Confidence 356788999999999999999999998888887777762111 1111 1133344444444333 335555
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccc--cccccccccccccCchhhhhhhhhhcc-ccccchhhHHhhhhccc--cchhH
Q 014634 176 LSYVSASGVLASIITLGSIFSTGAFD--GVGFHRKGTLVNWKGIPTSISLYAFCY-CAHPVFPTLYTSMKKKH--QFSHV 250 (421)
Q Consensus 176 l~~~s~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~--~~~~~ 250 (421)
+..++..+............+..... ..+......+.++.++..+++...-.+ ..-+...+..+.+|+|+ |.-..
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~ 231 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLA 231 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHH
Confidence 55555555555554444443333321 111112233666667777666554444 34455577788888887 55556
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcch-hhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccCCC
Q 014634 251 LLVCFFLCTFIYASMAVFGYLMFGSEV-QSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKR 329 (421)
Q Consensus 251 ~~~~~~~~~~~y~~~~~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~ 329 (421)
...+......+-.++|...-.+-|+.. ..+....+.. ....+.+.++++.+++--...++..-.+.+...+- +|
T Consensus 232 ~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l--~k 306 (442)
T COG1457 232 AVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL--SK 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh--hh
Confidence 666777777777778887777777655 2333333332 23344445556666666666777777766666542 22
Q ss_pred CceehhHHHHHHHHHHHHh--hccchHHHHHHhhhhhhhhh
Q 014634 330 PYSLLISTGFVISTVIVAL--VVPFFGYLMALVGAFLSMTA 368 (421)
Q Consensus 330 ~~~~~~~~~~~~~~~~ia~--~~~~~~~v~~~~G~~~~~~~ 368 (421)
..+...........+.+.. +..+++..+.+.|....+..
T Consensus 307 ~~~~v~~~v~igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~ 347 (442)
T COG1457 307 VTRVVIAGVGIGTLLALAGPFFYNFFENFLLLLGYFIPPWG 347 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333222222222222 34567777887777654433
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.48 E-value=0.00025 Score=68.54 Aligned_cols=285 Identities=10% Similarity=0.029 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 014634 64 SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAI 143 (421)
Q Consensus 64 g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~ 143 (421)
++...++...+...-.-+......+ ..-++.-++|..||++|..+..+...+...|=........++.+..+.+...+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~--~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGAD--TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444333334443332 33577889999999999999999888888877777777778888877654322
Q ss_pred cccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhhhccccc-cccccccccccccCchhhhhh
Q 014634 144 EVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFD-GVGFHRKGTLVNWKGIPTSIS 222 (421)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 222 (421)
.. .......+..++..+.+ ..+.+.++++..++........+...+....+ +.+... ..+.+ ..+..++.
T Consensus 109 ~~------~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~~~ 179 (386)
T TIGR02358 109 EE------SPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW-NRAGD-MSFAVAVE 179 (386)
T ss_pred CC------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc-CCCCC-ccHHHHHH
Confidence 11 11122333344444444 45677777777777766666554433322211 111011 11111 22333332
Q ss_pred hhhhc-cccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHH
Q 014634 223 LYAFC-YCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLV 301 (421)
Q Consensus 223 ~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i 301 (421)
...-. -......++..+..|+|||.-+....+..+...+...+|.....+.++..+....... + .........++
T Consensus 180 ~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g-~~~~~~~~~~l 255 (386)
T TIGR02358 180 LVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---G-LGIPALLIILL 255 (386)
T ss_pred HHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---c-HHHHHHHHHHH
Confidence 22211 1233447888888888888888888899999999998988777776654222233222 1 11223333444
Q ss_pred hhhhhhhcccchHHHHHHHhcccccCCCCceehhHHHHHHHHHHHHhh--ccchHHHHHHhhhhhhhhh
Q 014634 302 NPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALV--VPFFGYLMALVGAFLSMTA 368 (421)
Q Consensus 302 ~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~~~~~~v~~~~G~~~~~~~ 368 (421)
+..++-....++....+...+++- + ++++.+. ......+++.. ...+..+++..|....+..
T Consensus 256 ~~~~~n~~N~ys~~l~l~~l~~~~-~-~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~ 319 (386)
T TIGR02358 256 STVTTTFMDIYSAAISTGNLLPRL-K-VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLY 319 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-c-chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555667777777777776432 2 2222222 22222222222 2457777777666655433
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.44 E-value=0.00032 Score=69.71 Aligned_cols=339 Identities=11% Similarity=0.029 Sum_probs=165.9
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDR 101 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~--~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~ 101 (421)
..+++|+.++++-+..-.+..+..+.+.+-.+.-. .++- +++..++...+......+......+ ..-++.-++|.
T Consensus 20 vp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~--~Gl~~~v~sR~ 97 (484)
T PRK11375 20 KTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK--YGVPFAMILRA 97 (484)
T ss_pred CCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCChhHhHHH
Confidence 34455667766666555554444333322211112 2233 5555555544444444444444332 34678899999
Q ss_pred hcCccchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhccccccc-------ccccccccch-HHHHHHHHHHHhhhcccC
Q 014634 102 AFGRNGRIIVSIFMN-IELYLVATGFLILEGDNLENLFPNFAIE-------VGGLTIGAKQ-SFVVIIALIILPTVWLDN 172 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~i~~pl~~~~~ 172 (421)
.||++|.++..+... +..++=........++.+..++....+. .+....+... ....+..++..++. ..+
T Consensus 98 sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g 176 (484)
T PRK11375 98 SYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGG 176 (484)
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcC
Confidence 999999888887764 3443333334444455554433222111 0000111111 22224445555665 457
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhccccc-ccc--ccc-cc-ccc---ccCchhhhhhhhhhccc-cccchhhHHhhhhc
Q 014634 173 LSLLSYVSASGVLASIITLGSIFSTGAFD-GVG--FHR-KG-TLV---NWKGIPTSISLYAFCYC-AHPVFPTLYTSMKK 243 (421)
Q Consensus 173 ~~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~~--~~~-~~-~~~---~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~ 243 (421)
.+.++++..++........+.+.+..... +.+ .+. +. ... ....+..++...+=++. .-.+.|+..+..|+
T Consensus 177 ~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~ 256 (484)
T PRK11375 177 GKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHS 256 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCC
Confidence 77777777766665544333332222211 111 000 10 100 01123334433333343 44578899999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHH----HHhhhcchhh--hhhhhcCCCchhhHHHHHHHHHhhhhh-hhcccchHHH
Q 014634 244 KHQFSHVLLVCFFLCTFIYASMAVFG----YLMFGSEVQS--QITLNLPTTKLSSRVAIYTTLVNPIAK-YALMVTPVVN 316 (421)
Q Consensus 244 p~~~~~~~~~~~~~~~~~y~~~~~~g----y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~i~~~~s-~pl~~~~~~~ 316 (421)
+|+..+....+..+...+...+|+.. ...+|+...+ ++...+.+ .....++.+.++++...+ ..-..++.-.
T Consensus 257 ~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~ 335 (484)
T PRK11375 257 FRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGY 335 (484)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 88777777777777666665555433 3456554332 23333321 222333444445555555 3357788888
Q ss_pred HHHHhcccccCCCCceehhHHHHHHHHHHHHhh--ccc---hHHHHHHhhhhhhhhhHhh
Q 014634 317 TIKMRFSTQYSKRPYSLLISTGFVISTVIVALV--VPF---FGYLMALVGAFLSMTASVI 371 (421)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~~~---~~~v~~~~G~~~~~~~~~i 371 (421)
.+...+++.-++| |... ...++..+++.. +.+ +..+++..|++.+++....
T Consensus 336 ~l~~l~pk~i~~~--~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 336 QIAALAPTKLTYK--NGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHHHhCcCccchh--hHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888886543221 2111 111122222222 123 7777788777766654433
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.42 E-value=0.00025 Score=69.34 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=100.5
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCc-c
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGR-N 106 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~-~ 106 (421)
.|+.+++...+.+..+.+|++ .++.|....+.|+.++..............+...+..++ .+..|..|+.++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFIN-NGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHhCchH
Confidence 478888999999998888877 678898777778653322222222233334444454444 3789999999999998 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA 186 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 186 (421)
.+.+..+...+..+......+...+..++.+.+- + ....+++...++.......+++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 6666666666667666777777777777766531 1 1133445555666677788999988888877766
Q ss_pred HHHHH
Q 014634 187 SIITL 191 (421)
Q Consensus 187 ~~~~~ 191 (421)
++...
T Consensus 150 ~~~~~ 154 (407)
T TIGR00813 150 MILGT 154 (407)
T ss_pred HHHHH
Confidence 55443
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.39 E-value=0.00028 Score=68.96 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccc
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNG 107 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~ 107 (421)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+............+.+-.++ .+..|..|+-++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCch
Confidence 578889999999999988886 778898888888653222222222223333444444443 488999999999999988
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 108 --RIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 108 --~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
+.+..+...+.........+...+..++.+.+. + ....+++...+........+++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccch-h----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 666555555555555666666777777665531 1 113344555666667778888888877776666
Q ss_pred HHHHHHHhh
Q 014634 186 ASIITLGSI 194 (421)
Q Consensus 186 ~~~~~~~~i 194 (421)
.+++....+
T Consensus 153 i~~~~~~~~ 161 (406)
T PF00474_consen 153 IMIIGAIVV 161 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555444333
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.35 E-value=0.0022 Score=63.96 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=129.8
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHH--HHHHHH-HHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWL-SLLLL--FLIAAA-TFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~-g~i~~--~~~~~~-~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
..|+.+++...+.+..+.+|++ .++.|....+.|+. ..... ...+.+ .......+.+..++ .+..|.+|+.++-
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~~e~l~~R 116 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK-YNAITINDVLKAR 116 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccHHHHHHHH
Confidence 4688999999999999999888 66888777777753 11111 011111 11122233333444 3889999999999
Q ss_pred cCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FGRN-GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
||++ .+.+..+...+..++...+.+...+..++.+++- + ....+++..+++.......+++...+...
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-~----------~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-S----------YLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9965 4667777776666666666666666666665431 1 11334455555666777889999988888
Q ss_pred HHHHHHHHHHHhhhhccccc--ccc-------ccccc--cc---cccC--chhhhhh-hhhhccccccchhhHHhhhhcc
Q 014634 182 SGVLASIITLGSIFSTGAFD--GVG-------FHRKG--TL---VNWK--GIPTSIS-LYAFCYCAHPVFPTLYTSMKKK 244 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~--~~~-------~~~~~--~~---~~~~--~~~~~~~-~~~faf~~~~~~~~i~~~m~~p 244 (421)
+-.+.++.....+.+....+ +.+ ..++. .+ .++. ....++. ...+...+.+....-.-..||+
T Consensus 186 iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~ 265 (471)
T TIGR02119 186 IQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS 265 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH
Confidence 77766655433332222211 110 00000 01 1110 1111111 1222333333333333356667
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 014634 245 HQFSHVLLVCFFLCTFIYASMAVFGYLM 272 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 272 (421)
|+.+|....+..+...++....+.|..+
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 266 KAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 7788888877766666666555555444
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.34 E-value=0.0011 Score=66.25 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=107.9
Q ss_pred CCCCcchHHHHHHHHHhhhh-hhhchhHHHHHhhcHH-HHHHHH---HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 28 RTSKTSFFKTCFNGVNALSG-VGILSTPYALASGGWL-SLLLLF---LIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG-~GiL~LP~~~~~~G~~-g~i~~~---~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
..|+.+.+-.......+.++ .-++++|....+.|+. .++... .......+....+.+.. +.++..|..|+.++-
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~R 114 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEAR 114 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHH
Confidence 45677777777777777777 6789999999988875 333322 34444455566666766 456899999999999
Q ss_pred cC-ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FG-RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
|| |+.+.+..+...+....-+..-+...+..++..+. .+. ..-..+...++.......+++...+...
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~----------~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISY----------VTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCH----------HHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 99 88999999999999988888888888888866554 221 1233444556666666778888777776
Q ss_pred HHHHHHHHHH
Q 014634 182 SGVLASIITL 191 (421)
Q Consensus 182 ~~~~~~~~~~ 191 (421)
+-...+.+.+
T Consensus 184 iqg~im~i~~ 193 (493)
T COG0591 184 IQGLIMLIAL 193 (493)
T ss_pred HHHHHHHHHH
Confidence 6555554433
No 64
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.30 E-value=0.002 Score=61.60 Aligned_cols=312 Identities=15% Similarity=0.110 Sum_probs=159.2
Q ss_pred HHHHhhhhhhhchhHHHHH-hhc--HH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHH
Q 014634 40 NGVNALSGVGILSTPYALA-SGG--WL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFM 115 (421)
Q Consensus 40 ~li~~~iG~GiL~LP~~~~-~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~ 115 (421)
.+.+-.+|+|.|-.|-... ++| |. +.+.+++.++..-....+ +..+ ...+|.++.++ +||+.+.+..+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~--~gG~~~~l~~~-~g~~f~~lf~~~~ 76 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALAL--VGGGYDSLSAR-IGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeee--cCCCHHHHHHH-hChHHHHHHHHHH
Confidence 4567789999999997665 466 44 777777777665555443 1111 22578887765 6777777776665
Q ss_pred HHHHH-------HHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHH
Q 014634 116 NIELY-------LVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASI 188 (421)
Q Consensus 116 ~~~~~-------g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~ 188 (421)
.+..- ...++|-.. +..+++..... . ......+++..+.+-++ .|.-|-..++..+-+...+
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~---~---~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~lL 145 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSL---L---ALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPALL 145 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH----HHhccCcccch---H---HHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHHH
Confidence 54322 112223222 33333321100 0 01122222233333333 5677777777777777777
Q ss_pred HHHHhhhhccccccccccc-ccccccc-Cchhhhhhhhhhccc-------cccchhhHHh-hhhcccc-chhHHHHHH--
Q 014634 189 ITLGSIFSTGAFDGVGFHR-KGTLVNW-KGIPTSISLYAFCYC-------AHPVFPTLYT-SMKKKHQ-FSHVLLVCF-- 255 (421)
Q Consensus 189 ~~~~~i~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~~p~~-~~~~~~~~~-- 255 (421)
+.+..++..+..+..+..+ +..+..- ..+.+++-.--+++. |...+-.+.+ ++|||+| .++....+.
T Consensus 146 i~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia 225 (378)
T TIGR00796 146 VTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIA 225 (378)
T ss_pred HHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 7777777666654222111 1111111 335555555556666 7777888877 8999854 455555554
Q ss_pred -HHHHHHHHHHHhHHHHhhh---cc-hhhhhhhhcC---CCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC
Q 014634 256 -FLCTFIYASMAVFGYLMFG---SE-VQSQITLNLP---TTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS 327 (421)
Q Consensus 256 -~~~~~~y~~~~~~gy~~fg---~~-~~~~il~~~~---~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~ 327 (421)
.....+|.-.+..|...-+ +. ..+.++.+.. -++.-..+.-..+.++++++-.-....+.|.+++...
T Consensus 226 ~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~---- 301 (378)
T TIGR00796 226 AVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP---- 301 (378)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3334445544444443322 11 1223332221 1121111222223334444444444445555555543
Q ss_pred CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHH
Q 014634 328 KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLK 379 (421)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~ 379 (421)
|......-....+.++.++.. .++.++++ +.+.+.++.|....+.
T Consensus 302 -k~~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 302 -KLSYKTWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred -CCCHHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 122222333334444455553 67777775 4567777888666554
No 65
>PRK12488 acetate permease; Provisional
Probab=98.30 E-value=0.0033 Score=63.76 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=98.6
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC-c
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG-R 105 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G-~ 105 (421)
..|+.+++...+.+..+.++++ .++.|....+.|+.++...+-...-.......+.+-.++. +..|..|..++=|| |
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~-g~~T~~d~l~~Rf~s~ 143 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNL-GKYTFADVVSYRLAQG 143 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcchHHHHHHHcCCC
Confidence 3689999999999999988887 6789988878886543222111111111123344433443 67899999988887 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
..+.+..+...+..+.....-+...+..++.++. .+ ...-+++..+++.......+++...+...+-.+
T Consensus 144 ~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 144 PVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6888887776666666566666666666666542 11 113344555666667778899998888887766
Q ss_pred HHHHHHH
Q 014634 186 ASIITLG 192 (421)
Q Consensus 186 ~~~~~~~ 192 (421)
.++...+
T Consensus 213 im~~~~i 219 (549)
T PRK12488 213 LLLSGTS 219 (549)
T ss_pred HHHHHHH
Confidence 6655433
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.25 E-value=0.0026 Score=63.63 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=127.3
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHH-HHH--HHHHHH-HHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLS-LLL--LFLIAA-ATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g-~i~--~~~~~~-~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
..|+.+++...+.+..+.+|++ .++.|....+.|+.. +.. ...... ...+....+.+..++. +..|..|+.++-
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 4688889999999988888775 678887666667531 111 111111 1122333344444544 889999999999
Q ss_pred cCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 FGRN-GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 ~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
||++ .+.+..+...+..+......+...+..++.++. .+ ....+++..+++.......+++...+...
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~~TD~ 186 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVVLTDA 186 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9965 455555555555555555566666666666543 11 11334455566677777899999888888
Q ss_pred HHHHHHHHHHHhhhhccccc--cc-------cccc-----cccccccCchhhhhh---hhhhccccccchhhHHhhhhcc
Q 014634 182 SGVLASIITLGSIFSTGAFD--GV-------GFHR-----KGTLVNWKGIPTSIS---LYAFCYCAHPVFPTLYTSMKKK 244 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~--~~-------~~~~-----~~~~~~~~~~~~~~~---~~~faf~~~~~~~~i~~~m~~p 244 (421)
+-.+.++...+.+.+..... +. ...+ +....++.+.....+ ...+...+++....=.-..|++
T Consensus 187 iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~ 266 (483)
T PRK09442 187 LQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS 266 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH
Confidence 77666555443332222111 11 0000 000111111111111 1122233333322222246667
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 014634 245 HQFSHVLLVCFFLCTFIYASMAVFGYLM 272 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 272 (421)
|+.+|....+......++....+.|...
T Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~G~~~ 294 (483)
T PRK09442 267 KALHRGIIIGTIVVGFLMFGMHLAGALG 294 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777667766666655433
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.21 E-value=0.0036 Score=60.97 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 014634 64 SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAI 143 (421)
Q Consensus 64 g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~ 143 (421)
++...++...+......+......+ ..-++..++|..||.+|..+..+...+...+=........+..+.+..+ ..
T Consensus 44 ai~aiilG~~i~~~~~~l~~~~G~k--~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~- 119 (404)
T PRK11017 44 FLLAVLIGNLLLGIYTAALGYIGAK--TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD- 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC-
Confidence 5554444444444444444443332 3468889999999999999888877776655444444444444444322 11
Q ss_pred cccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHHHHHHHhhhhccccc--cccccccccccccCchhhhh
Q 014634 144 EVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFD--GVGFHRKGTLVNWKGIPTSI 221 (421)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 221 (421)
.. ...++..++..+... ...+.+.++...+........+...+....+ +.+......+.+...+..++
T Consensus 120 --------~~-~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 189 (404)
T PRK11017 120 --------IN-LLIVLSGLLMTVTAY-FGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAAL 189 (404)
T ss_pred --------HH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHH
Confidence 11 233344444444443 2345555555555544443333222221111 11110011112223455555
Q ss_pred hhhhhc-cccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 014634 222 SLYAFC-YCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGS 275 (421)
Q Consensus 222 ~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 275 (421)
....=. -..-.+.++..+..|+||+.......+..+...+...+|...-...|+
T Consensus 190 ~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 190 TLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 443333 344667889888888887666666777777777777777666555654
No 68
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.19 E-value=0.0032 Score=60.81 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=91.8
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHH---HHHHHHHHHHhhccCCCCCCH-----HHHH
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAA---TFYSGLLIKRCMDLDSNIKSY-----PDIG 99 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~---~~~~~~~l~~~~~~~~~~~s~-----~~l~ 99 (421)
+++.|.+|+++..+.+.+|.| +++.|.+...+|.-++..+-+.+++ +.+.-..+..-.++++++++| ..+-
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 456999999999999999998 9999999777775453333333333 333333333333433344557 7888
Q ss_pred HHhcCccchhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHH
Q 014634 100 DRAFGRNGRIIVSIFMNIELYL-VATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSY 178 (421)
Q Consensus 100 ~~~~G~~~~~~~~~~~~~~~~g-~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 178 (421)
+...|||.+.+..+. .+..++ ..........+.+++.. .. ..+...+...++..+....+++.+.+
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~---~~---------~~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF---NV---------PKLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc---CC---------cHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 888889988777776 333323 23444444444444221 10 11333344444444445689999999
Q ss_pred HHHHHHHHHHHHH
Q 014634 179 VSASGVLASIITL 191 (421)
Q Consensus 179 ~s~~~~~~~~~~~ 191 (421)
++......+....
T Consensus 191 v~~~lvP~m~~~Y 203 (425)
T TIGR00835 191 ISSVVVPFMALLY 203 (425)
T ss_pred HHHHHHHHHHHHH
Confidence 9988886666543
No 69
>PRK09395 actP acetate permease; Provisional
Probab=98.12 E-value=0.013 Score=59.47 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC-c
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG-R 105 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G-~ 105 (421)
..|+.+++...+.+..+.+|++ .++.|....+.|+.+....+-...........+.+-.++. +..|+.|+.++=|| |
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~-g~~T~~d~l~~Rygs~ 145 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNL-GKYTFADVASYRLKQG 145 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHcCCc
Confidence 4688888888899999888876 7799988778887543222211111112223344444443 77999999998888 4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
..+.+..+...+..+..........+..++.++. .+ ....+++...++.......+++...+...+-.+
T Consensus 146 ~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~----------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 146 PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN----------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 5777776665555444444555555555555432 11 113344555666667778899988888876665
Q ss_pred HHHHH
Q 014634 186 ASIIT 190 (421)
Q Consensus 186 ~~~~~ 190 (421)
.++..
T Consensus 215 im~~g 219 (551)
T PRK09395 215 LLLSG 219 (551)
T ss_pred HHHHH
Confidence 55443
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.10 E-value=0.0038 Score=59.76 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=124.6
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HH----HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWL-SL----LLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDR 101 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~-g~----i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~ 101 (421)
+++..|...-....+++.+|-| +--.||...+-|-. -+ +.++..+.-....=..+.|..+. ...++|+.+..
T Consensus 5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~-~~~~a~~~l~~- 82 (439)
T COG0733 5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRK-NAVGAFRKLAP- 82 (439)
T ss_pred ccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCC-ChhHHHHHhcc-
Confidence 4456677777888899999999 77999988875533 22 22333333333333333343332 24456666554
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc---c---c---ccccchHHHH---HHHHHHHhhhc
Q 014634 102 AFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVG---G---L---TIGAKQSFVV---IIALIILPTVW 169 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~---~---~---~~~~~~~~~~---~~~~i~~pl~~ 169 (421)
+|++ ....+......+..+.-|.++.+=.+..+........+ + . ...++..... +...++.-...
T Consensus 83 --~~~~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 83 --KKKW-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred --Cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 2332 33333334444445555555555444443322221110 0 0 0001011111 11122222233
Q ss_pred ccCCCh-hHHHHHHHHHHHHHHHHhhhhccccccccc--------cccccccccCchhhhhhhhhhcc-ccccchhhHHh
Q 014634 170 LDNLSL-LSYVSASGVLASIITLGSIFSTGAFDGVGF--------HRKGTLVNWKGIPTSISLYAFCY-CAHPVFPTLYT 239 (421)
Q Consensus 170 ~~~~~~-l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~ 239 (421)
.|++++ +.+.+.+-+...+...+.+..+....+... ++..+..|++.+..+++...|+. .|...+.+...
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsS 239 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSS 239 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456544 888888877777777766666665431111 11222344667788999999998 46666677777
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHh
Q 014634 240 SMKKKHQFSHVLLVCFFLCTFIYASMAV 267 (421)
Q Consensus 240 ~m~~p~~~~~~~~~~~~~~~~~y~~~~~ 267 (421)
.++|+++..+........-+.+=.+.|+
T Consensus 240 YL~k~~~l~~sa~~v~~~n~~~s~lAGl 267 (439)
T COG0733 240 YLSKKSDLVSSALSIVLLNTLISLLAGL 267 (439)
T ss_pred hcCcccchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888877666555555554444444
No 71
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.016 Score=55.92 Aligned_cols=362 Identities=12% Similarity=0.007 Sum_probs=175.5
Q ss_pred CCcchHHHHHHHHHhhhhhhhchhHHHHH-hhcHH-HHHHH--HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCc
Q 014634 30 SKTSFFKTCFNGVNALSGVGILSTPYALA-SGGWL-SLLLL--FLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGR 105 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~LP~~~~-~~G~~-g~i~~--~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~ 105 (421)
++.......+....+-+|.|-++---+.. +-|+- .++.+ .+...+...-...+... ...+..|..++.|+|
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgiv-----TG~~laq~ir~~y~~ 89 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIV-----TGKGLAEAIRERYLP 89 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHccc
Confidence 34455555666666777777666554443 46653 33222 22333332222222222 235778888888999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
+..++..+...+....+.++.....+--++-++.... .+-.++++...+.+...++.+.+..+...-..
T Consensus 90 ~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~-----------~~g~iItav~~~iil~~~~~r~~E~~v~~l~~ 158 (416)
T COG1914 90 GLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPL-----------IIGAVITAVDVLIILLLKGYRLLERVVLILGL 158 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH-----------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999888888888888888888777766553222 12333444444433334556666655544333
Q ss_pred HHHHHHHhhhhcccccccccc----c-ccccccc-Cchhhhhhhhh------hccccccchhh-HHhhhhccccch---h
Q 014634 186 ASIITLGSIFSTGAFDGVGFH----R-KGTLVNW-KGIPTSISLYA------FCYCAHPVFPT-LYTSMKKKHQFS---H 249 (421)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~~~~----~-~~~~~~~-~~~~~~~~~~~------faf~~~~~~~~-i~~~m~~p~~~~---~ 249 (421)
.+....+...... .+++. . ..+...+ .......+++= -.|.+.+.+-+ ..++-+++++.+ .
T Consensus 159 ~~~i~~~~~~~~~---~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~ 235 (416)
T COG1914 159 VLVILFVYVAFVA---PPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRI 235 (416)
T ss_pred HHHHHHHHHHhhc---CCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHH
Confidence 3333333222221 11111 0 0111111 11222221111 11111111111 100111112222 2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhh-cchhh---hhhhhcC-----CCchhhHHHHHHHHHhhhhhhhcccchHHHHHHH
Q 014634 250 VLLVCFFLCTFIYASMAVFGYLMFG-SEVQS---QITLNLP-----TTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKM 320 (421)
Q Consensus 250 ~~~~~~~~~~~~y~~~~~~gy~~fg-~~~~~---~il~~~~-----~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~ 320 (421)
-..+++....+....+-......|. ++..+ +.-..+. -++....+--..+..+-..+-..-.+.....++.
T Consensus 236 d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g 315 (416)
T COG1914 236 DTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEG 315 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHh
Confidence 3444555555555554444444442 22211 1111111 1111111111111111122222222333334455
Q ss_pred hcccccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcC---c-cccchhHHHHHH
Q 014634 321 RFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGA---Y-RRHGCEMMAILG 396 (421)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~---~-~~~~~~~~~~~~ 396 (421)
..+.+.+++.+|...|.....++..+.....+...++.+++.+.+..+-+..++++.+..+|+ + +..++.++..|.
T Consensus 316 ~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~ 395 (416)
T COG1914 316 FLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWI 395 (416)
T ss_pred hhcccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHH
Confidence 554444566678888877777766666666689999999998888877777777777766664 2 334566666666
Q ss_pred HHHHHHHHHHHHHH
Q 014634 397 IVSLAVLIAVVGTY 410 (421)
Q Consensus 397 ~~~~g~~~~~~g~~ 410 (421)
+..+=..+.+.-.+
T Consensus 396 v~~~i~~L~i~li~ 409 (416)
T COG1914 396 VVILIVALNIILLV 409 (416)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555444443
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.99 E-value=0.021 Score=58.03 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=93.4
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC-c
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG-R 105 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G-~ 105 (421)
..|+.+++...+.+..+.+++. .++.|....+.|+.+....+-.........+.+.+-.++. +..|..|..++=|| |
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~-g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNL-GRYTFADVASYRLKQR 143 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCCc
Confidence 3688888888888888877654 7899988777786543322211111112234445544544 67899999888786 5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 106 NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
..+.+..+...+.........+...+..++.+++. + ...-+++...++.......+++...+...+-.+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N----------YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56776666555555444555556666666555431 1 113344555666667778899888888877765
Q ss_pred HHHHH
Q 014634 186 ASIIT 190 (421)
Q Consensus 186 ~~~~~ 190 (421)
.++..
T Consensus 213 im~~g 217 (549)
T TIGR02711 213 LLLFG 217 (549)
T ss_pred HHHHH
Confidence 55543
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.98 E-value=0.0079 Score=58.39 Aligned_cols=341 Identities=12% Similarity=0.055 Sum_probs=164.3
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGG--WL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++|+=++++-+..=.+...-.+-..+-...-+.| +. .++.+.+...+....+.+-.+...+ -.-.|+..+|.-|
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~--~gIpFpv~~RaSF 113 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSK--YGIPFPVLSRASF 113 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccc--cCCCchHHHHHHH
Confidence 45566666665555544444333222222222233 33 5555555555555555555554333 3468999999999
Q ss_pred CccchhHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccccccc----cc---ccccccchHHHHHHHHHHHhhhcccCC
Q 014634 104 GRNGRIIV---SIFMNIELYLVATGFLILEGDNLENLFPNFAIE----VG---GLTIGAKQSFVVIIALIILPTVWLDNL 173 (421)
Q Consensus 104 G~~~~~~~---~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~i~~pl~~~~~~ 173 (421)
|-++..+. +......-+|... -..+..+..++....+. .. ....+.......+..-++-.++..+.+
T Consensus 114 Gi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 114 GIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCH
Confidence 88765443 4344444444322 12222222222222111 10 011111112222222233334457788
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhcccccccc----cccc-c--ccccc-Cchhhhhhhhhhcc-ccccchhhHHhhhhcc
Q 014634 174 SLLSYVSASGVLASIITLGSIFSTGAFDGVG----FHRK-G--TLVNW-KGIPTSISLYAFCY-CAHPVFPTLYTSMKKK 244 (421)
Q Consensus 174 ~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~----~~~~-~--~~~~~-~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p 244 (421)
++++++-.++-..+.+.++.+.+.......+ .+.+ . ...+. ..+...+...+-.| ...-|+|+..+.-|+|
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~ 270 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh
Confidence 8998888888877777666555444332111 1111 1 11111 12222222111111 3556778888888887
Q ss_pred ccchhHHHHHHHHHHHHHHHH----HhHHHHhhhcc--hhhhhhhhcCCCchhhHHHHHHHH-HhhhhhhhcccchHHHH
Q 014634 245 HQFSHVLLVCFFLCTFIYASM----AVFGYLMFGSE--VQSQITLNLPTTKLSSRVAIYTTL-VNPIAKYALMVTPVVNT 317 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~~----~~~gy~~fg~~--~~~~il~~~~~~~~~~~~~~~~~~-i~~~~s~pl~~~~~~~~ 317 (421)
+.-.+.-.++..+.+.+..++ +..++..||+. .+.++..++++......++-+.++ ..+-+...-...+....
T Consensus 271 ~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D 350 (497)
T COG1953 271 KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYD 350 (497)
T ss_pred hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHH
Confidence 654444444555555444444 45667779988 456788888877554412222222 23333344455566666
Q ss_pred HHHhcccccCCCCc-eehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhh
Q 014634 318 IKMRFSTQYSKRPY-SLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVIL 372 (421)
Q Consensus 318 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~il 372 (421)
+...+++.-+.|+- .....+.+.+.++-+=..-..+...++..|++.+++....+
T Consensus 351 ~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 351 LSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554331111 11122222222222222223577777777787777655443
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.93 E-value=0.034 Score=56.62 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
..|+.+++...+.+..+.++++ .++.|....+.|+.+.....-...........+.+-.++. +..|..|+-++=||++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~-~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKF-GKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccHHHHHHHHhCCC
Confidence 4689999999999999988776 7789987777776432222111111122334555555554 7789999999889854
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHH
Q 014634 107 -GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVL 185 (421)
Q Consensus 107 -~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~ 185 (421)
.+.+..+...+.........+...+..++.+... + ...-+++..+++...+...+++...+...+-.+
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~----------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D----------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5777666665555555555555556666555431 1 113344555666667778899888888777765
Q ss_pred HHHHH
Q 014634 186 ASIIT 190 (421)
Q Consensus 186 ~~~~~ 190 (421)
.++..
T Consensus 178 im~ig 182 (552)
T TIGR03648 178 VLIVA 182 (552)
T ss_pred HHHHH
Confidence 55443
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.89 E-value=0.0004 Score=68.60 Aligned_cols=244 Identities=11% Similarity=-0.014 Sum_probs=124.3
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALAS--GGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~--~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
+++|+.++++.+..-.+..+....+.+-..... .++- +++..++...+.............+ ..-+...++|..|
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r--~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR--TGLPTMVLSRASF 81 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC--C---HHHHTTTTS
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCchhcchhcc
Confidence 345666777777777776666665555544333 3344 6666665555554444445554443 3357788899999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc---cc-ccccccchHHH--HHHHHHHHhhhcccCCChhH
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIE---VG-GLTIGAKQSFV--VIIALIILPTVWLDNLSLLS 177 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~--~~~~~i~~pl~~~~~~~~l~ 177 (421)
|++|..+..+...+...|-........++.+..+.+...++ .+ .........++ ++..++..+.. ...++.+.
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~l~ 160 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKALR 160 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHHHH
Confidence 99999999999888888887778888888888877655321 00 00000000111 11222232222 34556666
Q ss_pred HHHHHHHHHHHHHHHhhhhcccc-ccc--cccccccccccCchhhhhhhhhhcc-ccccchhhHHhhhhccccchhHHHH
Q 014634 178 YVSASGVLASIITLGSIFSTGAF-DGV--GFHRKGTLVNWKGIPTSISLYAFCY-CAHPVFPTLYTSMKKKHQFSHVLLV 253 (421)
Q Consensus 178 ~~s~~~~~~~~~~~~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~ 253 (421)
++............+...+.... .+. ..+.+........+..++....-.+ ..-.+.++..+.+|++++-.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~ 240 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWL 240 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEee
Confidence 65555554444332222222111 111 1111111111113444444333332 3335567888899988777788888
Q ss_pred HHHHHHHHHHHHHhHHHHhh
Q 014634 254 CFFLCTFIYASMAVFGYLMF 273 (421)
Q Consensus 254 ~~~~~~~~y~~~~~~gy~~f 273 (421)
+..........+++.+...-
T Consensus 241 ~~~~~~~~~~~~g~lg~~~~ 260 (440)
T PF02133_consen 241 GFPGGFIPFVLVGILGAAAG 260 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 88777777777777665543
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.89 E-value=0.033 Score=56.03 Aligned_cols=152 Identities=12% Similarity=0.117 Sum_probs=88.7
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH----HhhccCCCCCCHHHHHHHh
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIK----RCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~----~~~~~~~~~~s~~~l~~~~ 102 (421)
..|+.+++-..+.+..+.+++. .++.|....+.|+.+....+............+. +-.++..+..|..|+.++=
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~R 117 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGR 117 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHH
Confidence 4689999999999999888888 5689988778886531111111111111111111 1112234778999999999
Q ss_pred cCccchh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHH
Q 014634 103 FGRNGRI---IVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYV 179 (421)
Q Consensus 103 ~G~~~~~---~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~ 179 (421)
||++.+. +..+...+.....+..-+...+..++.++. .+ ....+++...++.......+++...+.
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~aV~~T 186 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MS----------YETALWAGAAATILYTFIGGFLAVSWT 186 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9965433 334433333333333334444555554432 11 113445556677777778899998888
Q ss_pred HHHHHHHHHHH
Q 014634 180 SASGVLASIIT 190 (421)
Q Consensus 180 s~~~~~~~~~~ 190 (421)
..+-.+.++..
T Consensus 187 D~iQ~~imi~g 197 (502)
T PRK15419 187 DTVQASLMIFA 197 (502)
T ss_pred HHHHHHHHHHH
Confidence 88777665543
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.82 E-value=0.0034 Score=62.41 Aligned_cols=243 Identities=14% Similarity=0.101 Sum_probs=114.9
Q ss_pred CCCCCcchHHHHHHHHH-hhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCHHHHHHH
Q 014634 27 SRTSKTSFFKTCFNGVN-ALSGVG-ILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL--DSNIKSYPDIGDR 101 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~-~~iG~G-iL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~l~~~ 101 (421)
+++.|.+.+..++.=+. ++..+= .|=.++...++|.+ .+..+++...+..++..-+...+.. -.+-.-|..+.+-
T Consensus 62 s~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRs 141 (945)
T KOG1288|consen 62 SNRAKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRS 141 (945)
T ss_pred CCcccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcc
Confidence 33336666555443322 222111 34456777788877 6666665555555554444333221 1244556555544
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc-ccccccccccchHH----HHHHHHHHHhhhcccCCChh
Q 014634 102 AFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFA-IEVGGLTIGAKQSF----VVIIALIILPTVWLDNLSLL 176 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~~pl~~~~~~~~l 176 (421)
+|+-.+--+..+.++.+...|..++.-+.|-+-+-+.... ...........++| ..++..+.+.+|++ +-.-.
T Consensus 142 -LGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~l-Gsalf 219 (945)
T KOG1288|consen 142 -LGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLL-GSALF 219 (945)
T ss_pred -cCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHh-hHHHH
Confidence 4443323333444444555566666665555544443221 11111111111122 22333344445544 33334
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccc---ccccccc-----------c--cccc--------------------Cchhhh
Q 014634 177 SYVSASGVLASIITLGSIFSTGAFDG---VGFHRKG-----------T--LVNW--------------------KGIPTS 220 (421)
Q Consensus 177 ~~~s~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~-----------~--~~~~--------------------~~~~~~ 220 (421)
++.+.+-++.+....+.+.+.....+ ...+.++ + ..+| .++-..
T Consensus 220 Akas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~ 299 (945)
T KOG1288|consen 220 AKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFAST 299 (945)
T ss_pred HhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhh
Confidence 44444333333333333322222211 0000000 0 0111 233445
Q ss_pred hhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHhHHHH
Q 014634 221 ISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTFIYASMAVFGYL 271 (421)
Q Consensus 221 ~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~~y~~~~~~gy~ 271 (421)
++++.=+=.|.-.=-.+..|+|+| |.+||....+...++++|.++.++.-.
T Consensus 300 FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 300 FGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred heeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 555554445555556677899999 679999999999999999987765433
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.80 E-value=0.0043 Score=57.93 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=90.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
+|..+.-..+.+..+.+=..++-|+|...=|..-.+-||+ +++.+++-++...-.+.+..-...-+++-+|+.|++++.
T Consensus 44 ~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~ 123 (376)
T PF02554_consen 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKY 123 (376)
T ss_pred CCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444556778888999999999999999999888999999 888887776666666666555444344789999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNLEN 136 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 136 (421)
.||+++.+..+..++.......++....++.+.+
T Consensus 124 lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 124 LGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888877777776666543
No 79
>PRK10484 putative transporter; Provisional
Probab=97.72 E-value=0.07 Score=53.96 Aligned_cols=161 Identities=17% Similarity=0.077 Sum_probs=86.5
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
..|+.+++-..+.+..+.++++ .++.|....+.|+...................+..-.++ .+..|..|+.++-||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r-~~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLK-SGITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHhcCch
Confidence 4789999999999999888777 668897777777642211111111111223333333333 37889999999999998
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHhhhhhhhhcccccccccccccccchHH-HHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVA-TGFLILEGDNLENLFPNFAIEVGGLTIGAKQSF-VVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~-~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
.+.+......+...... ...+...+..++.++... ...+.+....... .++..++........+++...+...+-.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~ 192 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--ELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTING 192 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 77766655444333221 111212222222322100 0000000000011 1122344566677889999888888777
Q ss_pred HHHHHHH
Q 014634 185 LASIITL 191 (421)
Q Consensus 185 ~~~~~~~ 191 (421)
+.++...
T Consensus 193 vim~i~~ 199 (523)
T PRK10484 193 IGLLIGG 199 (523)
T ss_pred HHHHHHH
Confidence 6655543
No 80
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.65 E-value=0.074 Score=52.26 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENL 137 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~ 137 (421)
..++..|..++-|||+..++......+...+.........+.-++.+
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999988777766665656666665555555444433
No 81
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.65 E-value=0.084 Score=52.88 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=87.2
Q ss_pred CCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCCCHHHHHHHh
Q 014634 28 RTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDL----DSNIKSYPDIGDRA 102 (421)
Q Consensus 28 ~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~----~~~~~s~~~l~~~~ 102 (421)
..|+.+++-..+.+..+.+++. +++.|....+.|+.+.................+.+-.++ ..+..|..|+.++=
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 3678889988888888887766 667897777778653211111111112222333322221 33778999999999
Q ss_pred cCccchh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHH
Q 014634 103 FGRNGRI---IVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYV 179 (421)
Q Consensus 103 ~G~~~~~---~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~ 179 (421)
||++.+. +..+...+........-+...+..++.+++ .+ ...-+++...+........+++...+.
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~T 182 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSWT 182 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9965433 333333333333333344445555555432 11 113344555666667778899988888
Q ss_pred HHHHHHHHHHHH
Q 014634 180 SASGVLASIITL 191 (421)
Q Consensus 180 s~~~~~~~~~~~ 191 (421)
..+-.+.++...
T Consensus 183 D~iQ~~i~~~~~ 194 (487)
T TIGR02121 183 DFVQGLLMFFAL 194 (487)
T ss_pred HHHHHHHHHHHH
Confidence 877766655443
No 82
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.58 E-value=0.03 Score=53.96 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHHHHHHHH---HHHHHHHhhccCCCCCCHH---
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLIAAATFY---SGLLIKRCMDLDSNIKSYP--- 96 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~~~~~~~---~~~~l~~~~~~~~~~~s~~--- 96 (421)
++++++++.|.+|++...+.+.+|.| +-+..-|....|.-++..+-+.+++..- +=-.|..-.++..++.+|.
T Consensus 11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 44566779999999999999999999 7789999988887655555555554444 3344444444332333332
Q ss_pred -HHHHHhcCc-cchhHHHHHHHHHHHHH--HHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccC
Q 014634 97 -DIGDRAFGR-NGRIIVSIFMNIELYLV--ATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDN 172 (421)
Q Consensus 97 -~l~~~~~G~-~~~~~~~~~~~~~~~g~--~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~ 172 (421)
-+.++.+|+ |...+..++ .+..++. ...-...+.+.+++-+. -..+...+...++..+....+
T Consensus 91 ~yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~------------i~~~~~gi~l~~l~~~vi~GG 157 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFG------------IPPWITGIILAILVALVIFGG 157 (416)
T ss_pred HHHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhcc------------ccHHHHHHHHHHHHHHHHHcc
Confidence 345555654 344444444 2222222 12222222233322111 111333344444444555788
Q ss_pred CChhHHHHHHHHHHHH
Q 014634 173 LSLLSYVSASGVLASI 188 (421)
Q Consensus 173 ~~~l~~~s~~~~~~~~ 188 (421)
+|.+..++..-...+.
T Consensus 158 ikrI~~v~~~lVP~Ma 173 (416)
T PF01235_consen 158 IKRIAKVSEKLVPFMA 173 (416)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9988888876665444
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.04 E-value=0.17 Score=49.18 Aligned_cols=325 Identities=15% Similarity=0.169 Sum_probs=155.0
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHh-hc--HH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALAS-GG--WL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
|......-+.+.+-..|+|=|-.|-...+ +| |. +.+..++.++..-....+-.. + ...++++++++.- |+
T Consensus 2 ~k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~--~---~~~~~~~l~~~v~-~~ 75 (427)
T PF05525_consen 2 KKDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA--K---SGGGIEDLASRVG-PK 75 (427)
T ss_pred cchhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh--h---cCCCHHHHhcccC-cH
Confidence 33455667788889999999999987764 66 55 777777777655444322221 1 2238888887753 33
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634 107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA 186 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~ 186 (421)
.+.+......+ +.|-..+-=+..+-..+.-+....++ ........+.+++..+.+-++ .|.-|-+.++..+-+..
T Consensus 76 f~~if~~~i~l-~IGP~~aiPRtaa~sfe~~i~p~~~~---~~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk~LTP~ 150 (427)
T PF05525_consen 76 FALIFTILIYL-SIGPLFAIPRTAAVSFEMGIAPFFPE---NSNISLLIFSIIFFAITYLLS-LNPSKIVDRIGKFLTPI 150 (427)
T ss_pred HHHHHHHHHHH-HHHhcccCcchhhhhHHHhhhccCCc---ccccchhhhhHHHHHHHHHHH-hchhhHHHHHHHHHHHH
Confidence 33333322221 11211111111111111111111110 001122344455556666666 45556666666666666
Q ss_pred HHHHHHhhhhcccccccccccccc-ccc---c-Cchh------hhhhhhhhccccccchhhHHh-hhhccccch----hH
Q 014634 187 SIITLGSIFSTGAFDGVGFHRKGT-LVN---W-KGIP------TSISLYAFCYCAHPVFPTLYT-SMKKKHQFS----HV 250 (421)
Q Consensus 187 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~---~-~~~~------~~~~~~~faf~~~~~~~~i~~-~m~~p~~~~----~~ 250 (421)
.+..+..+++.+..+..+...++. ... + .++. .++..+.|+- -.+-.+.+ ..+|+|+.. ++
T Consensus 151 LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~---iIi~~i~~~g~~~~k~~~~~~~~a 227 (427)
T PF05525_consen 151 LLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI---IIINAIRQKGYKDKKEIKKYTIKA 227 (427)
T ss_pred HHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 666666666666554222221111 111 1 1111 2233333332 22222222 233444333 44
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh---cchh-hhhhhhcCC---CchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcc
Q 014634 251 LLVCFFLCTFIYASMAVFGYLMFG---SEVQ-SQITLNLPT---TKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFS 323 (421)
Q Consensus 251 ~~~~~~~~~~~y~~~~~~gy~~fg---~~~~-~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 323 (421)
-.++...-.++|...+..|...-+ ++.+ +.++....+ ++.-..+....+.++++++-.-....+.|.+++..+
T Consensus 228 g~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 228 GLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666677777776665543 2233 334433211 111111222223334444444345556666666654
Q ss_pred cccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHH
Q 014634 324 TQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKI 380 (421)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~ 380 (421)
|...........+.++++|.. .++.++.+ +.+++.++.|...-+-+
T Consensus 308 -----kisY~~~v~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 308 -----KISYKVWVIIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred -----ccChHHHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 122222333344555555553 57777776 44788889998776643
No 84
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.95 E-value=0.54 Score=47.57 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=51.4
Q ss_pred HHhhhcccCCChhHHHHHHHHHHHHHHHHhhhhccccc-----cccc---cccccccccCchhhhhhhhhhccc-cccch
Q 014634 164 ILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFD-----GVGF---HRKGTLVNWKGIPTSISLYAFCYC-AHPVF 234 (421)
Q Consensus 164 ~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~faf~-~~~~~ 234 (421)
+..++..|+++...++...........++.+.+++..- +... ++.....+..-...+++...|+.. |...+
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceE
Confidence 34455567777777666655443333333333333321 1100 011111222224678899999984 56666
Q ss_pred hhHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 014634 235 PTLYTSMKKKHQFSHVLLVCFFLCTFIYASMA 266 (421)
Q Consensus 235 ~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~ 266 (421)
......+|++++..+........-+..-++.|
T Consensus 270 it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 270 ITYGSYNKFKNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EEEcCcCCCCccccccceEEEcCchhhhHhHH
Confidence 77777777777877765555555544444333
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.038 Score=54.13 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=84.9
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
+|..+.-.++.+-.+.|=..++-|+|.+.=|.--++-||. +.+.+++-.+...--+..++-......+-.|..|++++.
T Consensus 44 nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~ 123 (575)
T COG1966 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKY 123 (575)
T ss_pred cCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHH
Confidence 3444456777888899999999999999999999999998 887777766666666666665544444779999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014634 103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNL 134 (421)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 134 (421)
.|+..+.+..+...+.......+........+
T Consensus 124 lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 124 LGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777766655555544444443
No 86
>PRK15015 carbon starvation protein A; Provisional
Probab=96.75 E-value=0.035 Score=55.61 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=83.9
Q ss_pred CCCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q 014634 25 DDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAF 103 (421)
Q Consensus 25 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 103 (421)
|..+.-.++.+-.+.|=..++-|+|.+.=|..-.+-||+ +.+.+++-.++..-...+..-......+-+|..|++++..
T Consensus 76 DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~i 155 (701)
T PRK15015 76 DGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEM 155 (701)
T ss_pred CCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHh
Confidence 334445666677899999999999999999888899999 8877776666655555555544333347799999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014634 104 GRNGRIIVSIFMNIELYLVATGFLILEGDNL 134 (421)
Q Consensus 104 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 134 (421)
||+++.++.+..++.......+......+.+
T Consensus 156 G~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 156 GPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888777766666665555554
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.027 Score=55.50 Aligned_cols=227 Identities=12% Similarity=0.128 Sum_probs=127.7
Q ss_pred CCCcchHHHHH-----HHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHH
Q 014634 29 TSKTSFFKTCF-----NGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL-DSNIKSYPDIGDR 101 (421)
Q Consensus 29 ~~~~s~~~~~~-----~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~~~l~~~ 101 (421)
+-+-++++.++ |+.+-++ .|=+++...|+|.. +++++.+...++..+..=-....++ .-+...-.-+..+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 34445555543 4444444 56789999999998 8888877776666554322222221 1122222333445
Q ss_pred hcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 102 AFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 102 ~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
.+|+-.+--+.+.+.+.+...+..|.+.++|.+.+++...... ..++ +..+..+++..++ .-+++.-.+...
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i~-~ag~~w~~k~q~ 175 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE----MIDG---IGSVTVLILLAIN-VAGVEWEAKLQI 175 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHhh-hccchhHHHHHH
Confidence 6777777777888888888889999999999999988765422 1111 1122233333333 223333333333
Q ss_pred HHHHHHHHHHHhhhhccccc-c------cccc------cccccccc-CchhhhhhhhhhccccccchhhHHhhhhcc-cc
Q 014634 182 SGVLASIITLGSIFSTGAFD-G------VGFH------RKGTLVNW-KGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQ 246 (421)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~-~------~~~~------~~~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~ 246 (421)
+-+...++.+.--++-.+.. + ..++ +..++.+. ..++.-+++..=+..|.-.=..+.+++|+| +.
T Consensus 176 ~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~ 255 (643)
T KOG2083|consen 176 VLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA 255 (643)
T ss_pred HHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh
Confidence 32222222111111111111 0 0000 00111111 245666666666776766677888999999 67
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 014634 247 FSHVLLVCFFLCTFIYASMA 266 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~y~~~~ 266 (421)
.++....+....+.+|..+.
T Consensus 256 IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 256 IPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred cccchhhhhhhhhhhhhhhh
Confidence 89999999999999997553
No 88
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.03 E-value=1.5 Score=42.00 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhc-
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVW- 169 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~- 169 (421)
..++..|..++.+||+..++..+...+.............+.-++.++ ..+ ...+..+..+....+..
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWL 108 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHH
Confidence 456888888999999988888888777777777777766666665544 211 11333344433333333
Q ss_pred -ccCCChhHHHHHHHHHHHHH
Q 014634 170 -LDNLSLLSYVSASGVLASII 189 (421)
Q Consensus 170 -~~~~~~l~~~s~~~~~~~~~ 189 (421)
.++.+.+.++...-...+.+
T Consensus 109 ~~~~y~~~E~~~~~lv~~m~l 129 (358)
T PF01566_consen 109 SSGGYRRLERILKVLVAVMVL 129 (358)
T ss_pred HhccchHHHHHHHHHHHHHHH
Confidence 67788888777655555533
No 89
>PHA02764 hypothetical protein; Provisional
Probab=95.70 E-value=1.7 Score=39.98 Aligned_cols=95 Identities=15% Similarity=-0.043 Sum_probs=66.3
Q ss_pred CCCCcchHHHHH-HHHHhhhhhhhchhHHHHHh--hcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 28 RTSKTSFFKTCF-NGVNALSGVGILSTPYALAS--GGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 28 ~~~~~s~~~~~~-~li~~~iG~GiL~LP~~~~~--~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
.-|+.+.+++++ |+.....|.++ +.|+-+.. -|...+..+++.++++.....+..+...+.|+.+.-....++++|
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 457788888888 55555556544 55654433 344455666666667766777777777777888888888899999
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVA 123 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~ 123 (421)
|+.+.+..+..+.......
T Consensus 89 P~~GFLvG~a~WLtl~~G~ 107 (399)
T PHA02764 89 SKFYTIFGISLWLTYVLSQ 107 (399)
T ss_pred ccHHHHHHHHHHHHHHhhc
Confidence 9999998888777655543
No 90
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=95.69 E-value=2.5 Score=42.00 Aligned_cols=162 Identities=15% Similarity=0.029 Sum_probs=76.9
Q ss_pred CCCCCcchHHHHHHHHHhhhhhhhchhH----HH-HHh------h-----------------cHHHHHHHHHHHHHHHHH
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVGILSTP----YA-LAS------G-----------------GWLSLLLLFLIAAATFYS 78 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP----~~-~~~------~-----------------G~~g~i~~~~~~~~~~~~ 78 (421)
+.|.+-|.++=...+..+-+|+|++.-. .. +.+ . |..++....+.++...|.
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~ 149 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYF 149 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhee
Confidence 3445556666688899999999987543 11 111 0 111333333333333333
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHhcCc----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccch
Q 014634 79 GLLIKRCMDLDSNIKSYPDIGDRAFGR----NGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQ 154 (421)
Q Consensus 79 ~~~l~~~~~~~~~~~s~~~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (421)
.+. +++..+..+..+-.+|+ +.+.++|.+..+...+....-+-.....+..-+.....-.++ ...+
T Consensus 150 ~y~-------k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~---~~~~ 219 (485)
T PF02028_consen 150 FYN-------KGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNT---FGLQ 219 (485)
T ss_dssp HHT-------S---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST---HHHH
T ss_pred eee-------cCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCc---hHHH
Confidence 221 22334444544444443 356777777776666655555555555555544333321110 0112
Q ss_pred HHHHHHHHHHHhhhcccCC-ChhHHHHHHHHHHHHHHHHhhhhcc
Q 014634 155 SFVVIIALIILPTVWLDNL-SLLSYVSASGVLASIITLGSIFSTG 198 (421)
Q Consensus 155 ~~~~~~~~i~~pl~~~~~~-~~l~~~s~~~~~~~~~~~~~i~~~~ 198 (421)
..++....+++..+...++ |.+++.|.+.....+..++.+...+
T Consensus 220 ~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~G 264 (485)
T PF02028_consen 220 IIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFG 264 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444445555566 4466666666655555444444443
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=95.66 E-value=2.4 Score=41.42 Aligned_cols=319 Identities=9% Similarity=-0.001 Sum_probs=151.9
Q ss_pred chHHHHHHHHHhhhhhhhchhHHHHHh-hc--HH-HHHHHHHHHHHHHHHH-HHHHHhhccCCCCCCHHHHHHHhcCccc
Q 014634 33 SFFKTCFNGVNALSGVGILSTPYALAS-GG--WL-SLLLLFLIAAATFYSG-LLIKRCMDLDSNIKSYPDIGDRAFGRNG 107 (421)
Q Consensus 33 s~~~~~~~li~~~iG~GiL~LP~~~~~-~G--~~-g~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~s~~~l~~~~~G~~~ 107 (421)
.....-+.+.+-..|+|=|-.|-...+ +| |. +.+..++.++..-... ....+ . + ++++|++++.- |+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~----~-~-g~~~~l~~rv~-~~f 81 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK----V-G-GGVDSLSTPIG-KVA 81 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh----c-C-CCHHHHhhhcc-hHH
Confidence 566678888999999999999988764 76 44 6666666665433322 22222 1 2 58888887643 333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHHH
Q 014634 108 RIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLAS 187 (421)
Q Consensus 108 ~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~~ 187 (421)
..+......+ +.|-+.+-=+..+-..+.-+....++ .. .....+.+++..+.+-++ .|.-|-+.++..+-+...
T Consensus 82 ~~~f~~~i~l-~IGP~~aiPRtaavsfEm~i~p~~~~---~~-~~~~ifs~iFF~i~~~l~-l~p~klvd~iGK~LTP~L 155 (439)
T PRK15433 82 GVLLATVCYL-AVGPLFATPRTATVSFEVGIAPLTGD---SA-LPLFIYSLVYFAIVILVS-LYPGKLLDTVGNFLAPLK 155 (439)
T ss_pred HHHHHHHHHH-HHhhccccCCccccchhheeeccCCc---cc-HHHHHHHHHHHHHHHHHH-cChhhHHHHhHHHHHHHH
Confidence 3333222221 12211111011111111001111110 00 011234455556666666 445555666666666666
Q ss_pred HHHHHhhhhccccccccccccc-ccc--c-c-Cch------hhhhhhhhhccccccchhhHHh-hhhccccch----hHH
Q 014634 188 IITLGSIFSTGAFDGVGFHRKG-TLV--N-W-KGI------PTSISLYAFCYCAHPVFPTLYT-SMKKKHQFS----HVL 251 (421)
Q Consensus 188 ~~~~~~i~~~~~~~~~~~~~~~-~~~--~-~-~~~------~~~~~~~~faf~~~~~~~~i~~-~m~~p~~~~----~~~ 251 (421)
+..+..++..+..+..+...++ ... + + .++ ..+++...|+- -.+-.+.+ ..+|+|+.. ++-
T Consensus 156 L~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~---iii~~i~~~G~~~~~~~~k~t~~ag 232 (439)
T PRK15433 156 IIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI---VIVNAARSRGVTEARLLTRYTVWAG 232 (439)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6555555555555422211111 111 1 1 111 23444555543 33333433 255655443 444
Q ss_pred HHHHHHHHHHHHHHHhHHHHh---hhcc-hhhhhhhhcCC---CchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhccc
Q 014634 252 LVCFFLCTFIYASMAVFGYLM---FGSE-VQSQITLNLPT---TKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFST 324 (421)
Q Consensus 252 ~~~~~~~~~~y~~~~~~gy~~---fg~~-~~~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 324 (421)
.++...-.++|...+..|-.. +++. ..+.++...-. +++...+-...+.+.++++-.-....+.+.+++.+.
T Consensus 233 ~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~- 311 (439)
T PRK15433 233 LMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP- 311 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 555566667777777776644 2221 22334433221 222222222333344555544455666666666542
Q ss_pred ccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHH
Q 014634 325 QYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLK 379 (421)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~ 379 (421)
.+.........+.++.+|.. .++.++++ ..+++.++.|....+-
T Consensus 312 -----isY~~~v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 312 -----LSYRTLVFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred -----CcHHHHHHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 12222333344444444443 46666665 4577888889766654
No 92
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.10 E-value=3.6 Score=40.11 Aligned_cols=180 Identities=15% Similarity=0.079 Sum_probs=103.8
Q ss_pred HHHHhhccCCCCCCHHHHH-HHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHH
Q 014634 81 LIKRCMDLDSNIKSYPDIG-DRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVI 159 (421)
Q Consensus 81 ~l~~~~~~~~~~~s~~~l~-~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
++.+-.|+. +..|..|.. +++.-+..|.+..+.-.+..+.-.++.+.-.+..++-++.... + .-+++
T Consensus 93 L~A~~LRk~-GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~-~----------vgv~i 160 (529)
T COG4147 93 LIAEYLRKL-GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPY-H----------VGVVI 160 (529)
T ss_pred HHHHHHHhc-CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc-e----------eehhh
Confidence 344545554 778888875 5555666777777666665555566667777777766665222 1 23345
Q ss_pred HHHHHHhhhcccCCChhHHHHHHHHHHHHHHHH----hhhhccccccccc-------c------cc-ccccccCchhhhh
Q 014634 160 IALIILPTVWLDNLSLLSYVSASGVLASIITLG----SIFSTGAFDGVGF-------H------RK-GTLVNWKGIPTSI 221 (421)
Q Consensus 160 ~~~i~~pl~~~~~~~~l~~~s~~~~~~~~~~~~----~i~~~~~~~~~~~-------~------~~-~~~~~~~~~~~~~ 221 (421)
..+++.....+.+++...+...+--+..+...+ .+......+..+. + .. ++....++-.+.+
T Consensus 161 g~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~i 240 (529)
T COG4147 161 GGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFI 240 (529)
T ss_pred HhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHH
Confidence 556666666789999999888765544433222 2222221111000 0 00 0111113344444
Q ss_pred hhhhhccccccchhhHHhhh---hccccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 014634 222 SLYAFCYCAHPVFPTLYTSM---KKKHQFSHVLLVCFFLCTFIYASMAVFGYLM 272 (421)
Q Consensus 222 ~~~~faf~~~~~~~~i~~~m---~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 272 (421)
+...--..|....|++.-.. .+-|+-++.+.++..+..++|+..-..|+.+
T Consensus 241 sl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 241 SLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443345666666665432 2336778999999999999999887777664
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.30 E-value=0.38 Score=46.76 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcc
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWL 170 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 170 (421)
+.+=..+++++.+|+.|..+..+.+.+.|+-+++.-....+|+.+++.+... .+.+..++.++.+.++..
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh
Confidence 3344567789999999999999999999999999999999999999887332 346667777777777754
Q ss_pred cCCChhHHHHHHH
Q 014634 171 DNLSLLSYVSASG 183 (421)
Q Consensus 171 ~~~~~l~~~s~~~ 183 (421)
+++.+-.++.--
T Consensus 329 -Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 329 -GLDQIIKISVPI 340 (427)
T ss_pred -CHHHHHHHHHHH
Confidence 666666655433
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.01 E-value=0.59 Score=44.90 Aligned_cols=82 Identities=13% Similarity=0.287 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcc
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWL 170 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 170 (421)
+..-..+++++.||+.|+.+..+.+.+.|+..+.......+|++.++.+... .+.+.....+..+-++.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~----------y~~~v~~~~l~s~~ia~- 321 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLS----------YKTWVIVFTLFSFIVAN- 321 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHH-
Confidence 4555678899999999999999999999999999999999999998865321 23555555555555553
Q ss_pred cCCChhHHHHHHH
Q 014634 171 DNLSLLSYVSASG 183 (421)
Q Consensus 171 ~~~~~l~~~s~~~ 183 (421)
-+++.+-.++...
T Consensus 322 ~Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 322 LGLTQIISISIPV 334 (378)
T ss_pred hCHHHHHHHHHHH
Confidence 3666665554433
No 95
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.99 Score=45.38 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=129.6
Q ss_pred CCCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcC
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFG 104 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G 104 (421)
...|+..++...+.++.+.+|++ ++++|.-..+.|.. ....+.....+.. ..+...-... ..+..+..|+.++-||
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~-~~~~f~Pvf~-~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLL-LGWIFIPVFY-RLGVTTMYEYLEKRFG 119 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHh-hheEEEEEEE-ecCeeehhHHHHHHhc
Confidence 34688889999999999999888 78999888888864 4333322221111 1111111111 2367788899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHH
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGV 184 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~ 184 (421)
+..+.+..+...++.+.-...+...-+-.+.+... +.. + ....+...+........+++..-+.-.+-.
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~--~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~ 188 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INL--Y-LIVVILGLICVFYTALGGLKAVIWTDVVQT 188 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCc--e-eehHHHHHHHHHHHHhcCeeEEEEhhHHHH
Confidence 88666666555555443322222111111111110 010 1 112223334444445677777777777777
Q ss_pred HHHHHHHHhhhhcccccccc-------------------cc-ccc-cccccCchhhhhhhhhhccccccchhhHHhhhhc
Q 014634 185 LASIITLGSIFSTGAFDGVG-------------------FH-RKG-TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKK 243 (421)
Q Consensus 185 ~~~~~~~~~i~~~~~~~~~~-------------------~~-~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 243 (421)
..++.....+...+...-.+ +. ++. ...-|.-++.....-...+..+++...=+-.+|+
T Consensus 189 ~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~s 268 (585)
T KOG2349|consen 189 VIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPS 268 (585)
T ss_pred HHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcccc
Confidence 77777666666665432000 00 011 1222333334455555666777776666666666
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHHhh
Q 014634 244 KHQFSHVLLVCFFLCTFIYASMAVFGYLMF 273 (421)
Q Consensus 244 p~~~~~~~~~~~~~~~~~y~~~~~~gy~~f 273 (421)
-++.++.+........+........|...|
T Consensus 269 lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 269 LKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 677777777776666666665555555544
No 96
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=91.98 E-value=13 Score=36.23 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCCCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhhccCCCCCCHH----HH
Q 014634 27 SRTSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLF---LIAAATFYSGLLIKRCMDLDSNIKSYP----DI 98 (421)
Q Consensus 27 ~~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~---~~~~~~~~~~~~l~~~~~~~~~~~s~~----~l 98 (421)
++++..|.+|+...-+.+.+|+| +-...-|.+..|.-++..+= +.+..+.|.=..|.+-.++..++..|. -+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 67899999999999999999999 66888899888864333333 345555555556666555433344443 23
Q ss_pred HHHhcC-ccchhHHHHHHHHHHHH--HHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCCh
Q 014634 99 GDRAFG-RNGRIIVSIFMNIELYL--VATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSL 175 (421)
Q Consensus 99 ~~~~~G-~~~~~~~~~~~~~~~~g--~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~ 175 (421)
.++-+| ||.+.++.+... ..+| ....-...+++.+++-+.. ..+..-+...++..+..+.+++.
T Consensus 138 i~kGl~~r~l~v~FA~~li-~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALI-AAFGFIGNGVQSNSIASALANAFGI------------PPLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHHHHHH-HHHHhhcchhhHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHcchHH
Confidence 334444 444445543222 2223 3444444445554443221 12344444444444555789999
Q ss_pred hHHHHHHHHHHHHH
Q 014634 176 LSYVSASGVLASII 189 (421)
Q Consensus 176 l~~~s~~~~~~~~~ 189 (421)
+..++...+..+.+
T Consensus 205 Ia~v~~~vVPfMA~ 218 (452)
T COG1115 205 IAKVSSKVVPFMAI 218 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888766554
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.56 E-value=3.4 Score=39.60 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcc
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWL 170 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 170 (421)
+.+=..+..++.||+.|..+...++.+.|+-+++.-....+|+..++++... +..+..++.++.+.++..
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 4455677889999999999999999999999999999999999999988544 235666666766666643
Q ss_pred cCCChhHHHHHH
Q 014634 171 DNLSLLSYVSAS 182 (421)
Q Consensus 171 ~~~~~l~~~s~~ 182 (421)
+++++-..|.-
T Consensus 331 -GL~~Ii~isvP 341 (431)
T COG1114 331 -GLEQIIKISVP 341 (431)
T ss_pred -hHHHHHHHHHH
Confidence 56666555543
No 98
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=90.18 E-value=17 Score=34.47 Aligned_cols=237 Identities=11% Similarity=-0.006 Sum_probs=127.0
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHHHHHHHHHH-----HHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWLSLLLLFLI-----AAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~g~i~~~~~-----~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
.|+.+-+-..++...+-+|+. .++=|.+-.+.|. ||+++... ...-..-..-+.+..+++ +.-+..|+-++=
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl-gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~-nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL-GWVLLAMIQVPTVWLALGVLGKKFAILAREY-NALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-CCeeHHHHHHHH
Confidence 566777777777888888776 4566777666552 22222221 111222233344444545 778888887765
Q ss_pred -cCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHH
Q 014634 103 -FGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSA 181 (421)
Q Consensus 103 -~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~ 181 (421)
=++...++..+.+.+...+...+.++-.+..++....-.. + .-+.+++..+.....+.+.+.....-.
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY----------~-tgL~ifa~~V~iYt~fGGFRAvvltD~ 184 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDY----------T-TGLLIFAVSVAIYTAFGGFRAVVLTDT 184 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCc----------h-hhHHHHHHHHHHHHhhcceeeeehHHH
Confidence 4677888888888888888888888888888776543222 1 223455555555566667666554443
Q ss_pred HHHHHHHH----HHHhhhhcccc-c-------ccccc--cccccccc--Cchhhhhh-hhhhccccccchhhHHhhhhcc
Q 014634 182 SGVLASII----TLGSIFSTGAF-D-------GVGFH--RKGTLVNW--KGIPTSIS-LYAFCYCAHPVFPTLYTSMKKK 244 (421)
Q Consensus 182 ~~~~~~~~----~~~~i~~~~~~-~-------~~~~~--~~~~~~~~--~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p 244 (421)
+.-..+++ .++.+++.+.. + +.++. .|....+. .++..++- .++++-.|++....=.-.-||.
T Consensus 185 IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDs 264 (473)
T COG4145 185 IQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDS 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccch
Confidence 33333332 22233333211 0 01111 11111110 12223332 3445555555544444455666
Q ss_pred ccchhHHHHHHHHHHHHHHH---HHhHHHHhhhcchh
Q 014634 245 HQFSHVLLVCFFLCTFIYAS---MAVFGYLMFGSEVQ 278 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~y~~---~~~~gy~~fg~~~~ 278 (421)
|...+.+.++..++.++-+. .|..|...+.|-++
T Consensus 265 kaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 265 KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 66666666666666555553 45666666665443
No 99
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=90.05 E-value=19 Score=34.85 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHH--HHHHHHhhh
Q 014634 91 NIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVI--IALIILPTV 168 (421)
Q Consensus 91 ~~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~pl~ 168 (421)
..++..|..++.++|+.++..-+...+...+.........+.-++.+++. + ......+ ...+.+.+.
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~-p----------~~~~v~~~~~~~~~~~~~ 130 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSHI-P----------LWGGVLITIVDVFLFLFL 130 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-c----------HHHHHHHHHHHHHHHHHH
Confidence 44789999999999887665554444444444444444444444433321 1 1122222 222333334
Q ss_pred cccCCChhHHHHHHHHHHHHHHH
Q 014634 169 WLDNLSLLSYVSASGVLASIITL 191 (421)
Q Consensus 169 ~~~~~~~l~~~s~~~~~~~~~~~ 191 (421)
..++.+.+.++...-...+.+.+
T Consensus 131 ~~~~yr~~E~~~~~lv~~m~~~f 153 (390)
T TIGR01197 131 DKPGLRILEAFVALLVTIVAICF 153 (390)
T ss_pred HhCCceeHHHHHHHHHHHHHHHH
Confidence 45777777776544433333333
No 100
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=88.79 E-value=33 Score=35.77 Aligned_cols=107 Identities=12% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCHHHHHHHhcC
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL--DSNIKSYPDIGDRAFG 104 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~~~l~~~~~G 104 (421)
.+-.+......-.+..+.|.= .+=|-+....+|.. ++.+.++++..+..+..-+...... -+.-.+|.-+.+ .+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISR-sLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISR-SLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEec-ccC
Confidence 345555666667777788766 34677888889988 8888777777666665544443222 245577777665 456
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014634 105 RNGRIIVSIFMNIELYLVATGFLILEGDNLEN 136 (421)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 136 (421)
|-.+..+.++..+..-.....|+.-.-+.+-.
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 65555666666666666667777766666554
No 101
>PRK09950 putative transporter; Provisional
Probab=88.75 E-value=28 Score=34.93 Aligned_cols=167 Identities=13% Similarity=-0.020 Sum_probs=83.9
Q ss_pred CCCcchHHHHHHHHHhhhhhhhchh----HHH-HH------hhcH----H-HHHHHHHHHHHHHHHHHHHHHh------h
Q 014634 29 TSKTSFFKTCFNGVNALSGVGILST----PYA-LA------SGGW----L-SLLLLFLIAAATFYSGLLIKRC------M 86 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~GiL~L----P~~-~~------~~G~----~-g~i~~~~~~~~~~~~~~~l~~~------~ 86 (421)
|.+-|.++=+..+.++-+|+|++.- |.. ++ +.|- - +.-...+=+.+..++.+.+... .
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555558888899999998743 221 11 1111 0 2222222223333333322221 1
Q ss_pred ccCCCCCCHHHHHHHhcCcc----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHH
Q 014634 87 DLDSNIKSYPDIGDRAFGRN----GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIAL 162 (421)
Q Consensus 87 ~~~~~~~s~~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
.++.+..+..+..+-.+|++ .+.++|+...+...+....-+-....++..-+.....-..+ ...+..++....
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~---~~~~~~ii~vi~ 237 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN---FTVQAFVILLSG 237 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHH
Confidence 12335567888888888853 56788887777666665555555555555544333211110 011233333344
Q ss_pred HHHhhhcccCC-ChhHHHHHHHHHHHHHHHHhhhhcc
Q 014634 163 IILPTVWLDNL-SLLSYVSASGVLASIITLGSIFSTG 198 (421)
Q Consensus 163 i~~pl~~~~~~-~~l~~~s~~~~~~~~~~~~~i~~~~ 198 (421)
+++-++...++ |.++++|.+........++.+...+
T Consensus 238 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~G 274 (506)
T PRK09950 238 VIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVLIVG 274 (506)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 44445555555 5666666666655555544444443
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=87.65 E-value=30 Score=34.07 Aligned_cols=257 Identities=14% Similarity=0.070 Sum_probs=124.8
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGG--WL-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
++.+|.=++++-...=....++.+-.-....--+.| |- +++...+.-.+...-..+-.+.... =.-+++-..|..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~--yhIsFpv~sR~s 127 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSD--YHISFPVLSRSS 127 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccCCCcc--cccceeeeeeee
Confidence 445677788888877777778877777766666777 33 6666554443333322222221111 123555555666
Q ss_pred cCcc---chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-------cccccccccch-HHHHHHHHHHHhhhcc-
Q 014634 103 FGRN---GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAI-------EVGGLTIGAKQ-SFVVIIALIILPTVWL- 170 (421)
Q Consensus 103 ~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~i~~pl~~~- 170 (421)
||-+ ...+.+++....-+|.. .-+.++.++-.++...+ ..+....+... ..-+++-++.+|..++
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeecc
Confidence 6654 34445555554444432 22333333333222211 11111111122 2223444666666654
Q ss_pred -cCCChhHHHHHHHHHHHHHHHHhhhhccccc-cccccccccccccCchhhhhhhhhhcc----ccccchhhHHhhhhcc
Q 014634 171 -DNLSLLSYVSASGVLASIITLGSIFSTGAFD-GVGFHRKGTLVNWKGIPTSISLYAFCY----CAHPVFPTLYTSMKKK 244 (421)
Q Consensus 171 -~~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf----~~~~~~~~i~~~m~~p 244 (421)
..++++-..+...+....+.+++-....... |.-.+++....+.......+-.+..++ .+..|.|...+--|+|
T Consensus 205 p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ksp 284 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAKSP 284 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcCCC
Confidence 3455666666666655555554443333222 122222222223222222222222222 3556778888888888
Q ss_pred ccchhHHHHHH----HHHHHHHHHHHhHHHHhhhcch--hhhhhhhcCC
Q 014634 245 HQFSHVLLVCF----FLCTFIYASMAVFGYLMFGSEV--QSQITLNLPT 287 (421)
Q Consensus 245 ~~~~~~~~~~~----~~~~~~y~~~~~~gy~~fg~~~--~~~il~~~~~ 287 (421)
.+....-.++. .+..++=++.+..++..||.+. +-+++.++.+
T Consensus 285 ~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~ 333 (572)
T KOG2466|consen 285 NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLD 333 (572)
T ss_pred CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhc
Confidence 65544333333 3444444455667788899864 3455666543
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.66 E-value=5 Score=39.21 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=58.4
Q ss_pred HHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCC
Q 014634 95 YPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLS 174 (421)
Q Consensus 95 ~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~ 174 (421)
.....++.+|++++.+..+.+.+.|+-++++-....+|.+++..+ . +++.+..+..++.++++.. +++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHHHh-HHH
Confidence 345678899999999999999999999999999999999998764 1 1346667777788888754 555
Q ss_pred hhHHHHH
Q 014634 175 LLSYVSA 181 (421)
Q Consensus 175 ~l~~~s~ 181 (421)
++-..+.
T Consensus 335 ~II~~s~ 341 (439)
T PRK15433 335 QLIQISV 341 (439)
T ss_pred HHHHHHH
Confidence 5554444
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=83.32 E-value=62 Score=33.73 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=76.9
Q ss_pred CCcchHHHHHHHHHhhhhhhhchh----HHH-HH-----hhcH----H-HHHHHHHHHHHHHHHHHHHHHhh-----ccC
Q 014634 30 SKTSFFKTCFNGVNALSGVGILST----PYA-LA-----SGGW----L-SLLLLFLIAAATFYSGLLIKRCM-----DLD 89 (421)
Q Consensus 30 ~~~s~~~~~~~li~~~iG~GiL~L----P~~-~~-----~~G~----~-g~i~~~~~~~~~~~~~~~l~~~~-----~~~ 89 (421)
.+-|.++=+..+.++-+|+|++.- |.. +. ..|- - +.....+=+.+..|+.+.++... .++
T Consensus 91 PefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~ 170 (679)
T PRK09928 91 PEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRY 170 (679)
T ss_pred CCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcC
Confidence 333444447888999999998743 322 11 1111 1 23333333444444444443321 122
Q ss_pred CCCCCHHHHHHHhcCcc----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHH
Q 014634 90 SNIKSYPDIGDRAFGRN----GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIIL 165 (421)
Q Consensus 90 ~~~~s~~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 165 (421)
+...+.....+-++|++ .+.++|++..+...+....-+-+....+..-+..... .+. .. ..+..+++...+++
T Consensus 171 ~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfG-i~~-~~-~~q~~ii~vi~~i~ 247 (679)
T PRK09928 171 NLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFD-IPE-SL-AAQAALIALSVIIA 247 (679)
T ss_pred CCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC-cc-HHHHHHHHHHHHHH
Confidence 23366777777777753 4566776655554444443333333333333322221 110 00 11233333333444
Q ss_pred hhhcccCC-ChhHHHHHHHHHHHHHHHHhhhhcc
Q 014634 166 PTVWLDNL-SLLSYVSASGVLASIITLGSIFSTG 198 (421)
Q Consensus 166 pl~~~~~~-~~l~~~s~~~~~~~~~~~~~i~~~~ 198 (421)
.++...++ |.++++|.+.+...+..++.+.+.+
T Consensus 248 ~~S~~sGl~KGIk~LS~lN~~La~~LllfVli~G 281 (679)
T PRK09928 248 TISVTSGVNKGIRVLSELNVLLALGLILFVLFMG 281 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeecc
Confidence 44444444 5566666666655555444444433
No 105
>PLN02680 carbon-monoxide oxygenase
Probab=82.95 E-value=9.5 Score=33.74 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=61.9
Q ss_pred ccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCC
Q 014634 209 GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTT 288 (421)
Q Consensus 209 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~ 288 (421)
...++|..++...+.+.. .++..+. ++..+.+|+.+|.+....-...+...++|+.....+ +.+.+..+-++-.
T Consensus 44 ~~~Fn~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~--hn~~~~~nfySlH 117 (232)
T PLN02680 44 DLIFNVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKF--HNEKGIDNFYSLH 117 (232)
T ss_pred cceEechHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCccccccHH
Confidence 347888888887777663 2222222 233455577789999999999998888888654444 3333333333444
Q ss_pred chhhHHHHHHHHHhhhhhhhcccchH
Q 014634 289 KLSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 289 ~~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
.|.......+..++.+..+....+|-
T Consensus 118 SWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 118 SWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 56665666666666666666555553
No 106
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=78.36 E-value=88 Score=32.42 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=38.8
Q ss_pred CCCCCCcchHHHHHHHHHhhhhhh-hchhHHHHHh-hcHH----HHHHHHHHHHHHHHHHHHHHHh
Q 014634 26 DSRTSKTSFFKTCFNGVNALSGVG-ILSTPYALAS-GGWL----SLLLLFLIAAATFYSGLLIKRC 85 (421)
Q Consensus 26 ~~~~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~-~G~~----g~i~~~~~~~~~~~~~~~l~~~ 85 (421)
+++.+-.+..+-.+..++-.+|-| +.=.|+...+ .|-. -.++++++|.=..+.-..+.+-
T Consensus 32 ~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf 97 (629)
T KOG3660|consen 32 PDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQF 97 (629)
T ss_pred cccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence 344555588889999999999999 5669986655 5522 4444445555445544445543
No 107
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=75.98 E-value=86 Score=31.06 Aligned_cols=107 Identities=10% Similarity=-0.048 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHhhhhhhhchh----HHH-HHh--hc---------HH-HHHHHHHHHHHHHHHHHHHHHh-----hccC
Q 014634 32 TSFFKTCFNGVNALSGVGILST----PYA-LAS--GG---------WL-SLLLLFLIAAATFYSGLLIKRC-----MDLD 89 (421)
Q Consensus 32 ~s~~~~~~~li~~~iG~GiL~L----P~~-~~~--~G---------~~-g~i~~~~~~~~~~~~~~~l~~~-----~~~~ 89 (421)
-|.++=...+.++-+|+|++.- |.. +++ .| .. +.-...+=+.+..++.+.+... ..++
T Consensus 37 fS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~rk 116 (453)
T TIGR00842 37 FSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVRK 116 (453)
T ss_pred CcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhheec
Confidence 3344447788889999997743 322 111 11 01 2222233333344444433332 2223
Q ss_pred CCCCCHHHHHHHhcCcc----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014634 90 SNIKSYPDIGDRAFGRN----GRIIVSIFMNIELYLVATGFLILEGDNLENLF 138 (421)
Q Consensus 90 ~~~~s~~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 138 (421)
.+..+..+..+-.+|++ .+.++|+...+...+....-+-....++..-+
T Consensus 117 ~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl 169 (453)
T TIGR00842 117 GLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGL 169 (453)
T ss_pred CCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567888888888754 46677777666655555444444444444433
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=73.75 E-value=1e+02 Score=30.96 Aligned_cols=111 Identities=12% Similarity=-0.022 Sum_probs=58.1
Q ss_pred CCCcchHHHHHHHHHhhhhhhhchh----HHHHH-h--hc----H----H-HHHHHHHHHHHHHHHHHHHHHh------h
Q 014634 29 TSKTSFFKTCFNGVNALSGVGILST----PYALA-S--GG----W----L-SLLLLFLIAAATFYSGLLIKRC------M 86 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~GiL~L----P~~~~-~--~G----~----~-g~i~~~~~~~~~~~~~~~l~~~------~ 86 (421)
|.+-|.++=+..+.++-+|+|++.- |.... . .| - . +.-...+=+.+..++.+.+... .
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3444555558888899999998754 32211 0 11 1 1 2222233333444444433322 1
Q ss_pred ccCCCCCCHHHHHHHhcCcc-----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014634 87 DLDSNIKSYPDIGDRAFGRN-----GRIIVSIFMNIELYLVATGFLILEGDNLENLFP 139 (421)
Q Consensus 87 ~~~~~~~s~~~l~~~~~G~~-----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 139 (421)
++..+..+..+..+-.+|++ .+.++|+...+...+....-+-....++..-+.
T Consensus 163 ~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~ 220 (504)
T PRK03356 163 VRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQ 220 (504)
T ss_pred hcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22222236788888888842 467778776666665555555544444444433
No 109
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=71.96 E-value=1e+02 Score=30.15 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=102.2
Q ss_pred hhhhhhhhccccccchhhHHhhhhccccchhH-HHHHHHHHHHH-HHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHH
Q 014634 219 TSISLYAFCYCAHPVFPTLYTSMKKKHQFSHV-LLVCFFLCTFI-YASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAI 296 (421)
Q Consensus 219 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~-~~~~~~~~~~~-y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~ 296 (421)
.....+-.......--+.+-+-.++-|+-.+. ...+..+.... .++....++..|+.--+...-+-....+-...+..
T Consensus 194 ~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~ 273 (415)
T COG0814 194 YLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLS 273 (415)
T ss_pred HHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHH
Confidence 34444445554444444444444445777774 55555555544 44566677777755333333333334433444444
Q ss_pred HHHH--HhhhhhhhcccchHHHHHHHhccc----------ccCC-C-Cc-eehhHHHHHHHHHHHHhhccc-hHHHHHHh
Q 014634 297 YTTL--VNPIAKYALMVTPVVNTIKMRFST----------QYSK-R-PY-SLLISTGFVISTVIVALVVPF-FGYLMALV 360 (421)
Q Consensus 297 ~~~~--i~~~~s~pl~~~~~~~~~~~~~~~----------~~~~-~-~~-~~~~~~~~~~~~~~ia~~~~~-~~~v~~~~ 360 (421)
.... .+...+++.+.++......+.+.. ..++ + .. |..........+.+.++..|. +....+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 353 (415)
T COG0814 274 ALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYA 353 (415)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhH
Confidence 3332 233478888888888765554331 1111 1 11 667888888899999998875 88888889
Q ss_pred hhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 361 GAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 361 G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
|++...+.+-++|.+++++-++..
T Consensus 354 ~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 354 GGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 989999999999999999876554
No 110
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=70.19 E-value=17 Score=30.71 Aligned_cols=108 Identities=8% Similarity=0.099 Sum_probs=61.8
Q ss_pred ccccccccccccccCchhhhhhhhhhccccccchhhHHh--hhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchh
Q 014634 201 DGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYT--SMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQ 278 (421)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~--~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~ 278 (421)
++..++.+...++|..++...+.+.. .-+.+..... .-+.+|+.+|.+....-...++..++|+.....+-++
T Consensus 24 gG~~w~~~~~~Fn~HP~lMv~Gfi~L---~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~-- 98 (179)
T cd08762 24 GGFAWDGSSKNFNWHPVLMVTGMVVL---YGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV-- 98 (179)
T ss_pred CccCCCCCCCceeehHHHHHHHHHHH---HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 34455544447888877776665544 2222222221 1123566678999999999998888888666655433
Q ss_pred hhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccch
Q 014634 279 SQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTP 313 (421)
Q Consensus 279 ~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~ 313 (421)
..+.+.++-..|.......+..++-+..+....+|
T Consensus 99 ~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 99 HHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344445555555555555665555555444
No 111
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=67.49 E-value=1.3e+02 Score=29.36 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=138.6
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHh-hc---HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALAS-GG---WLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN 106 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~-~G---~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~ 106 (421)
+...+..-+.+..-..|+|=+-.|-...+ +| |.+..-.++.++..=.-...-.. . ..+++++++++. |||
T Consensus 4 ~k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a--~---~g~~~~~l~~~i-~~~ 77 (431)
T COG1114 4 KKDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVA--L---YGGGVESLATRI-GPW 77 (431)
T ss_pred chhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhh--c---cCCCHHHHhhhc-cch
Confidence 34455666788888999999999987764 66 33555555544433222111111 1 223889988874 555
Q ss_pred chhHHHHHHHHHHHHH--------HHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHH
Q 014634 107 GRIIVSIFMNIELYLV--------ATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSY 178 (421)
Q Consensus 107 ~~~~~~~~~~~~~~g~--------~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~ 178 (421)
.+.+......+.. |- .++|-+... .+. .+ .......++..+...+..-+++ +--|-+.+
T Consensus 78 fg~~f~~~iyLsI-GPffAiPRt~~vsfe~~i~----p~~----~~---~~~~~l~ifs~ifF~ia~~~sl-~psklid~ 144 (431)
T COG1114 78 FGVLFAIAIYLSI-GPFFAIPRTGAVSFEVGIS----PLL----GD---SSLPSLFIFSVIFFAIAYLFSL-NPSKLIDR 144 (431)
T ss_pred HHHHHHHHHHHHh-cccccCCcccchhHHHhhh----ccc----CC---CcchHHHHHHHHHHHHHHHHHc-CHHHHHHH
Confidence 4444432222211 10 011111100 000 00 0111122344444455555553 33344444
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccc-cccccc---cccc-----CchhhhhhhhhhccccccchhhHHhh-hhccc---
Q 014634 179 VSASGVLASIITLGSIFSTGAFDGVG-FHRKGT---LVNW-----KGIPTSISLYAFCYCAHPVFPTLYTS-MKKKH--- 245 (421)
Q Consensus 179 ~s~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---~~~~-----~~~~~~~~~~~faf~~~~~~~~i~~~-m~~p~--- 245 (421)
+..+-+...+..++.+.+.......+ ..++.+ .+.+ .+..+.=....++| |.-.+-.+.+. .+++|
T Consensus 145 vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~F-givIv~alk~~g~~~~~~~~ 223 (431)
T COG1114 145 VGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAF-GIVIVNALKSKGVTTKKQII 223 (431)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHH-HHHHHHHHHHhccCcHHHHH
Confidence 44444444444444444444332111 111111 1111 12211112233344 22222233222 12222
Q ss_pred -cchhHHHHHHHHHHHHHHHHHhHHHHhh---hcch-hhhhhhhcCCC---chhhHHHHHHHHHhhhhhhhcccchHHHH
Q 014634 246 -QFSHVLLVCFFLCTFIYASMAVFGYLMF---GSEV-QSQITLNLPTT---KLSSRVAIYTTLVNPIAKYALMVTPVVNT 317 (421)
Q Consensus 246 -~~~~~~~~~~~~~~~~y~~~~~~gy~~f---g~~~-~~~il~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~~~~~~ 317 (421)
+..++-.++-..-..+|...+-.|-.+- ++.. .+.++....+. +.-..+.-..+.+.++++-.-....+.|.
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555556667776666663322 1111 12344332211 11111111222333344433345556677
Q ss_pred HHHhcccccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHH
Q 014634 318 IKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLK 379 (421)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~ 379 (421)
+++.+++ .......++..+.++.+|.. .++.++.+ +.+.+..+.|....+.
T Consensus 304 F~~~~p~-----~SY~~~v~if~i~sflvan~--GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 304 FSKLVPK-----LSYKTWVIIFTLISFLVANL--GLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred HHHhccc-----ccHHHHHHHHHHHHHHHHHh--hHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 7766652 22223444455556666653 46667665 5678888999766654
No 112
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=62.64 E-value=1.4e+02 Score=30.03 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=40.1
Q ss_pred CCCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014634 92 IKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPN 140 (421)
Q Consensus 92 ~~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 140 (421)
..-..++-....||++......+..+..+..+++-.+..+..+..+-++
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 4566788888899999988888888888888888888888888777543
No 113
>PLN02810 carbon-monoxide oxygenase
Probab=61.45 E-value=76 Score=28.08 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=58.4
Q ss_pred cccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCc
Q 014634 210 TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTK 289 (421)
Q Consensus 210 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~ 289 (421)
..++|.+++...+.+.. .-+.+... +..+.+|+.+|.+....=...++..++|+.....+-+ +..+-+-++-..
T Consensus 45 ~~FN~HPvlMv~Gfi~l---~geAIL~Y-r~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn--~~~i~nlySLHS 118 (231)
T PLN02810 45 LIFNLHPVLMLIGLIII---GGEAIMSY-KSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHN--ESGIANLYSLHS 118 (231)
T ss_pred ceeeehHHHHHHHHHHH---hhHHHHHh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCceeeHHH
Confidence 36888887776664432 22222222 3344456778999999989888888888866555533 333333344445
Q ss_pred hhhHHHHHHHHHhhhhhhhcccchH
Q 014634 290 LSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 290 ~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
|.......+..++-+..+-...+|.
T Consensus 119 WlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 119 WLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6655555555556555554444443
No 114
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=52.66 E-value=2.1e+02 Score=27.03 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=6.3
Q ss_pred hHhhhhhHHHH
Q 014634 368 ASVILPCLCYL 378 (421)
Q Consensus 368 ~~~ilP~l~~l 378 (421)
+.+++++++-+
T Consensus 328 ~~~l~~~l~~~ 338 (349)
T COG3949 328 LLILFAVLYKY 338 (349)
T ss_pred HHHHHHHHHhh
Confidence 55566665554
No 115
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=50.87 E-value=33 Score=28.29 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=62.0
Q ss_pred cccccccccccCchhhhhhhhhhccccccchhhHHhh--hhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhh
Q 014634 204 GFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTS--MKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQI 281 (421)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~--m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~i 281 (421)
.++.+...++|..++...+.+. ..++ .+...... .+.+|+.+|.+....-...++..++|+.....+-++ .+.
T Consensus 4 ~w~~~~~~Fn~HPlLm~~Gfi~--l~ge-AiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~--~~~ 78 (153)
T cd08765 4 GWDGGAAEFNWHPVLMVIGFIF--IQGI-AIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNA--KNI 78 (153)
T ss_pred CCCCCCCeeechHHHHHHHHHH--HHHH-HHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCC
Confidence 3443444678877777776544 1122 22212111 122366778889888888888888888666555333 233
Q ss_pred hhhcCCCchhhHHHHHHHHHhhhhhhhcccchH
Q 014634 282 TLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
.+-++-..|...+...+..++.+..+..+.+|.
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 222333456666666666777777777776775
No 116
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=49.27 E-value=3e+02 Score=27.86 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=19.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhhhhhchh
Q 014634 24 NDDSRTSKTSFFKTCFNGVNALSGVGILST 53 (421)
Q Consensus 24 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~L 53 (421)
+++.+.+..|| .+.+..+-+|+|++..
T Consensus 83 ~~~PEfs~~SW---~aMLFaAGmGigl~fw 109 (537)
T COG1292 83 DEKPEFSTLSW---LAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCCCcchhHH---HHHHHHcccCceeeEe
Confidence 34444455555 7888999999998754
No 117
>PRK11403 hypothetical protein; Provisional
Probab=48.20 E-value=92 Score=23.93 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=53.9
Q ss_pred eehhHHHHHH--HHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHH
Q 014634 332 SLLISTGFVI--STVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGT 409 (421)
Q Consensus 332 ~~~~~~~~~~--~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 409 (421)
|...+..+.. ..+.+.+. +-...+|==|-.+...+.-.+|.+-+.|.-+++.....-.-.+|.....++.+..+|.
T Consensus 5 r~~sw~aL~~G~~~YliGLW--nA~m~LneKGYyf~vL~~GlF~~vs~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl 82 (113)
T PRK11403 5 KTVAKLLFVVGALVYLVGLW--ISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIHICQLVALITIGLLFIGV 82 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccccccCccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333 34444443 3344455556666677777899999999877763344556678888888888888888
Q ss_pred HHHHHHHH
Q 014634 410 YVSLVQII 417 (421)
Q Consensus 410 ~~si~~l~ 417 (421)
+++=..+-
T Consensus 83 ~NA~l~ls 90 (113)
T PRK11403 83 LNAPINAY 90 (113)
T ss_pred hcccccHH
Confidence 88754443
No 118
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=45.09 E-value=1.5e+02 Score=23.17 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHhh---c-HH-HHHHHHHHHHHH----HHHHHHHHHhhccCCCCCCHHHH
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALASG---G-WL-SLLLLFLIAAAT----FYSGLLIKRCMDLDSNIKSYPDI 98 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~~---G-~~-g~i~~~~~~~~~----~~~~~~l~~~~~~~~~~~s~~~l 98 (421)
+..+...+..+.-..+|+..+.+....... | -. ++.+++ .|+++ .|-.+++..+.+.+ +-.+|.++
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~lli-lG~L~fIPG~Y~~~i~y~a~rg~-~Gysf~~I 112 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLI-LGILCFIPGFYHTRIAYYAWRGY-KGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH-HHHHHHhccHHHHHHHHHHHcCC-CCCCHhhC
Confidence 344666666666666777766666443321 2 22 333333 33333 44455555555544 45666654
No 119
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=44.89 E-value=3e+02 Score=26.59 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=32.4
Q ss_pred hhccccccch--hhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 014634 225 AFCYCAHPVF--PTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFG 274 (421)
Q Consensus 225 ~faf~~~~~~--~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg 274 (421)
.|||++.+.. +++.-.+--.+.-......++......|......++-.++
T Consensus 394 lfAfggle~~Fl~plvlgLYw~kaNa~ga~aSMi~g~~~y~~l~~~~~ki~~ 445 (473)
T COG4145 394 LFAFGGLEAVFLWPLVLGLYWEKANAAGALASMIVGLVLYVLLAFLGIKILG 445 (473)
T ss_pred hhhhcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhhHhhe
Confidence 4677777765 3444333322333456777888888899988888777664
No 120
>TIGR00909 2A0306 amino acid transporter.
Probab=43.70 E-value=3.2e+02 Score=26.61 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=38.8
Q ss_pred CCHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014634 93 KSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPN 140 (421)
Q Consensus 93 ~s~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 140 (421)
....+..++..|+++..+..+...+..++...+.....+..+...-++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 446677788889999989999999999998888888888888776543
No 121
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=43.25 E-value=77 Score=25.85 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=57.1
Q ss_pred cccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCC
Q 014634 208 KGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPT 287 (421)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~ 287 (421)
+...++|..++...+.+... -+.+... +..+.+|+.+|.+....-...+...++|+.....+-++ .+..+.++-
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~---~eAiL~~-r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~--~~~~~~~Sl 77 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLA---GEAILAY-KTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNE--VGIPNLYSL 77 (144)
T ss_pred CcceeeccHHHHHHHHHHHH---HHHHHHh-hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCccccccH
Confidence 34567777777666643332 1112222 23455577788899999999999998888554444332 222222333
Q ss_pred CchhhHHHHHHHHHhhhhhhhcccchH
Q 014634 288 TKLSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 288 ~~~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
..|.......+..++.+..+....+|.
T Consensus 78 HSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 78 HSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455555555555556665555455554
No 122
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=40.07 E-value=2.1e+02 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=20.8
Q ss_pred hhhhhhhchhHHHHHh--hcHH----HHHHHHHHHHHHHHH
Q 014634 44 ALSGVGILSTPYALAS--GGWL----SLLLLFLIAAATFYS 78 (421)
Q Consensus 44 ~~iG~GiL~LP~~~~~--~G~~----g~i~~~~~~~~~~~~ 78 (421)
+-+|.+.+..|++... -++. |++++.+..++..+-
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAll 87 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALL 87 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998753 3333 444444444443333
No 123
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=39.79 E-value=3.9e+02 Score=26.55 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCHHHHHHHhcCc-cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 014634 93 KSYPDIGDRAFGR-NGRIIVSIFMNIELYLVATGFLILEGDNLENLFP 139 (421)
Q Consensus 93 ~s~~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 139 (421)
..+.++.+..+|. ++..+......+..++...+.....+..+..+-+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 336 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSR 336 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777887 5666666666677777777777777777665543
No 124
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=38.13 E-value=3.3e+02 Score=25.22 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=19.5
Q ss_pred chhhHHhhh--hccccchhHHHHHHHHHHHHHHHHHhHH
Q 014634 233 VFPTLYTSM--KKKHQFSHVLLVCFFLCTFIYASMAVFG 269 (421)
Q Consensus 233 ~~~~i~~~m--~~p~~~~~~~~~~~~~~~~~y~~~~~~g 269 (421)
..+.+.+.. +|+++.++....+.....++-.++++..
T Consensus 52 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (342)
T TIGR00797 52 TTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVG 90 (342)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 3456666666666666655555544443
No 125
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=35.72 E-value=89 Score=26.88 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred hHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014634 353 FGYLMALVGAFLSMTASVILPCLCYLKISGAY---------RRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIG 418 (421)
Q Consensus 353 ~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~l~~ 418 (421)
+....=+.|++.++-+..++|+...+...++. ..+|.+-....+...+|++.+++...-|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444556677777788899999999888763 0245566677778888888888888777777654
No 126
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=35.66 E-value=2.6e+02 Score=27.75 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=19.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhHHHH
Q 014634 243 KKHQFSHVLLVCFFLCTFIYASMAVFGYL 271 (421)
Q Consensus 243 ~p~~~~~~~~~~~~~~~~~y~~~~~~gy~ 271 (421)
|+++.++....+......+-..+++.-+.
T Consensus 312 ~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 312 NYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887777777666655443
No 127
>COG3817 Predicted membrane protein [Function unknown]
Probab=33.19 E-value=2.9e+02 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014634 389 CEMMAILGIVSLAVLIAVVGTYVSLVQIIGHY 420 (421)
Q Consensus 389 ~~~~~~~~~~~~g~~~~~~g~~~si~~l~~~~ 420 (421)
|..+.--.+..+|.++...|.--++-.++..|
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~ 197 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLISEI 197 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34445557788899998888888888887765
No 128
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.53 E-value=1.6e+02 Score=25.92 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=60.8
Q ss_pred cccccccccccccCchhhhhhhhhhccccccchhhHHhhhhc-cccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhh
Q 014634 202 GVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKK-KHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQ 280 (421)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~ 280 (421)
+..++.+...++|..++...+.+... -+.+. +++..++ +|+..|.+....-...++..++|+.....+-++.+..
T Consensus 14 G~~~~~~~~~Fn~HP~lM~~Gfi~l~---geAiL-vyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~ 89 (214)
T cd08764 14 GFSWTGPGLQFNWHPLLMVLGLIFLY---GNSIL-VYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPP 89 (214)
T ss_pred ccccCCCCceEeecHHHHHHHHHHHH---HHHHH-HhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 44455444467888777766654322 11111 1122232 2444688888888888888888875544443333223
Q ss_pred hhhhcCCCchhhHHHHHHHHHhhhhhhhcccchH
Q 014634 281 ITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 281 il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
..+-++-..|.......+..++.+..+....+|.
T Consensus 90 ~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 90 IPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444456666666666667666665555553
No 129
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=32.04 E-value=48 Score=20.92 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 014634 249 HVLLVCFFLCTFIYASMAVFGYLMFGSE 276 (421)
Q Consensus 249 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~ 276 (421)
.+...++.+..++..+.|..-|.+||+.
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4555666667777777777777788864
No 130
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=31.68 E-value=2.2e+02 Score=25.35 Aligned_cols=109 Identities=7% Similarity=0.048 Sum_probs=62.6
Q ss_pred cccccccc-ccccccCchhhhhhhhhhccccccchhhHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhh
Q 014634 201 DGVGFHRK-GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQS 279 (421)
Q Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~ 279 (421)
+|..++.. ...+++.+++.-+|.+.+ .-+.+...+..-.+.|+.+|.+....=.+.+...++|+.....+-++..
T Consensus 43 ~Glaw~~~~~~~fnlHP~lMviGfI~l---~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~- 118 (245)
T KOG1619|consen 43 GGLAWSSSPNKEFNLHPVLMVIGFIYL---QGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG- 118 (245)
T ss_pred CccCCCCCcchhcCcchHHHHHHHHHh---ccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Confidence 34555533 356777777766665543 2233333333344568889999999999998888888877665533322
Q ss_pred hhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchH
Q 014634 280 QITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPV 314 (421)
Q Consensus 280 ~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~ 314 (421)
+-+-++-..|.......+...+-+..+--+.+|.
T Consensus 119 -i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 119 -IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred -ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222333456555555555555555554444443
No 131
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=31.51 E-value=4e+02 Score=26.40 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCC-CchhhHHHHHHHHHhhhhhhhcccchHHHHHH
Q 014634 241 MKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPT-TKLSSRVAIYTTLVNPIAKYALMVTPVVNTIK 319 (421)
Q Consensus 241 m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~-~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~ 319 (421)
-||+++.+++...+..+..++-+++++..++ ..++++.-+.. ++... .+.-.+-+......+...+-. +.
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ll~~l~~~~~v~~-~a~~Yl~i~~~~~~~~~~~~~---~~ 156 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLF-----FAEPLLRLLGAPAEVLE-LAAEYLRIILLGAPFALLSFV---LS 156 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHhHHH-HHHHHHHHHHHHHHHHHHHHH---HH
Confidence 4566788888888888888888777777665 33445555543 23222 332222333333333333322 23
Q ss_pred HhcccccCCCCceehhHHHHHHHHHHHHhhc--cchHHHHHHhhhhhhhhhHhhhhhHHHHHH
Q 014634 320 MRFSTQYSKRPYSLLISTGFVISTVIVALVV--PFFGYLMALVGAFLSMTASVILPCLCYLKI 380 (421)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~--~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~ 380 (421)
..+....+.+ .-............++.... -.++- +++.|+-..+.+...+.+++.+..
T Consensus 157 ~~lr~~G~~~-~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~ 217 (455)
T COG0534 157 GILRGLGDTK-TPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIY 217 (455)
T ss_pred HHHHhcCCCc-hhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 3332222222 12222222222222222221 11222 788888888888888877666543
No 132
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.74 E-value=98 Score=27.43 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHh---------hhhhhhhhHhhhhhHHHHHHhcCc----cccchhHHHHHHHHHHHH
Q 014634 336 STGFVISTVIVALVVPFFGYLMALV---------GAFLSMTASVILPCLCYLKISGAY----RRHGCEMMAILGIVSLAV 402 (421)
Q Consensus 336 ~~~~~~~~~~ia~~~~~~~~v~~~~---------G~~~~~~~~~ilP~l~~l~~~~~~----~~~~~~~~~~~~~~~~g~ 402 (421)
.-+.++.++++|..++.++-++.+. |+.++.-+.++= |..+.+.. ...--+++..|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3445555666777666666555542 444444333332 22222111 111125889999999999
Q ss_pred HHHHHHHHHH
Q 014634 403 LIAVVGTYVS 412 (421)
Q Consensus 403 ~~~~~g~~~s 412 (421)
++.+-|+++=
T Consensus 235 ll~lr~~i~Y 244 (262)
T KOG4812|consen 235 LLFLRGFINY 244 (262)
T ss_pred HHHHHHHHhH
Confidence 9998887653
No 133
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=30.69 E-value=1.5e+02 Score=23.33 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhhhhhhchhHHHHHhhcHH--HHHHHHHHH-HHHHHHHHHHHHh
Q 014634 34 FFKTCFNGVNALSGVGILSTPYALASGGWL--SLLLLFLIA-AATFYSGLLIKRC 85 (421)
Q Consensus 34 ~~~~~~~li~~~iG~GiL~LP~~~~~~G~~--g~i~~~~~~-~~~~~~~~~l~~~ 85 (421)
.++-....+.+.+=.|-+++|..++.+|.+ |-..+...+ .+...+......+
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~ 119 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLI 119 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 333444444555557789999999999987 444455555 3444444443343
No 134
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.84 E-value=50 Score=25.05 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.6
Q ss_pred hhhhhchhHH
Q 014634 46 SGVGILSTPY 55 (421)
Q Consensus 46 iG~GiL~LP~ 55 (421)
||.|++.++.
T Consensus 9 Iglgv~~~Gg 18 (104)
T PF11460_consen 9 IGLGVFLLGG 18 (104)
T ss_pred ecHHHHHHHH
Confidence 5566665553
No 135
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=27.75 E-value=1.6e+02 Score=24.21 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=34.1
Q ss_pred HhhhhhhhhhHhhhhhHHHHHHhcCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014634 359 LVGAFLSMTASVILPCLCYLKISGAY-RRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIG 418 (421)
Q Consensus 359 ~~G~~~~~~~~~ilP~l~~l~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~l~~ 418 (421)
..|+-.+.+.+|..|.+.+.- ..+. +.-+..+..-.+-+++|+..++.++..+.....+
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~y-k~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRY-KTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHH-hcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567788888877653 1111 0111112444566788888888888777665553
No 136
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=27.58 E-value=50 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcc
Q 014634 251 LLVCFFLCTFIYASMAVFGYLMFGSE 276 (421)
Q Consensus 251 ~~~~~~~~~~~y~~~~~~gy~~fg~~ 276 (421)
...+..+..++..+.|..-|.+||+.
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34455666666666777777888854
No 137
>CHL00020 psbN photosystem II protein N
Probab=26.73 E-value=48 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcc
Q 014634 250 VLLVCFFLCTFIYASMAVFGYLMFGSE 276 (421)
Q Consensus 250 ~~~~~~~~~~~~y~~~~~~gy~~fg~~ 276 (421)
+...++.+..++..+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445566666666666677777788864
No 138
>PRK10189 MATE family multidrug exporter; Provisional
Probab=23.74 E-value=5.4e+02 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=14.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhH
Q 014634 243 KKHQFSHVLLVCFFLCTFIYASMAVF 268 (421)
Q Consensus 243 ~p~~~~~~~~~~~~~~~~~y~~~~~~ 268 (421)
|+++.++....+.....+.-..+++.
T Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~~~~l 355 (478)
T PRK10189 330 QIAQAERQLRHVFWLSTLGLTAIAWL 355 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555554444443
No 139
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=23.73 E-value=1.2e+02 Score=22.06 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=25.7
Q ss_pred hHHhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHhhh
Q 014634 236 TLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFG 274 (421)
Q Consensus 236 ~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg 274 (421)
.+.++++++++-+|.+.++.+.+++.-.+.+.+|+..|.
T Consensus 41 ~~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~ 79 (84)
T PF09716_consen 41 KIDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYK 79 (84)
T ss_pred hhhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666555667777776666666777777887764
No 140
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=23.71 E-value=8.2e+02 Score=25.25 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=52.8
Q ss_pred CCCcchHHHHHHHHHhhhhhh-hchhHHHH-HhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634 29 TSKTSFFKTCFNGVNALSGVG-ILSTPYAL-ASGGW---L-SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA 102 (421)
Q Consensus 29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~-~~~G~---~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~ 102 (421)
+.-.+-.+.....++..++.| +--.||-- ++.|+ + -.+.+++.|+=..|.=..+.+-+++ +...-+..++-..
T Consensus 79 ~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-g~~gvw~ri~P~l 157 (629)
T KOG3659|consen 79 PTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-GCIGVWRRIAPAL 157 (629)
T ss_pred CcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-cchhHHHHhCHHh
Confidence 344566778888899999988 55779864 45664 4 6677777777777776777775543 2334444555544
Q ss_pred cCccchhHHHHHHH
Q 014634 103 FGRNGRIIVSIFMN 116 (421)
Q Consensus 103 ~G~~~~~~~~~~~~ 116 (421)
-| .+.-++.+.++
T Consensus 158 ~G-igy~i~~i~~~ 170 (629)
T KOG3659|consen 158 KG-IGYAICLIAFF 170 (629)
T ss_pred cC-CchhhhHHHHH
Confidence 44 33333333333
No 141
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=23.70 E-value=6e+02 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=15.5
Q ss_pred HHHhhhhhhhhhHhhhhhHHHH
Q 014634 357 MALVGAFLSMTASVILPCLCYL 378 (421)
Q Consensus 357 ~~~~G~~~~~~~~~ilP~l~~l 378 (421)
.++.|+-.+..+...+-+++.+
T Consensus 188 ~Gi~Gaa~At~is~~~~~~~~~ 209 (453)
T PRK09575 188 WGLTGAAIATALAQLVVTVLGL 209 (453)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777766544
No 142
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.45 E-value=1.3e+02 Score=18.26 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHHHhhhhhhhhhHhhhhhHHHHHHhcCc
Q 014634 356 LMALVGAFLSMTASVILPCLCYLKISGAY 384 (421)
Q Consensus 356 v~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 384 (421)
.++.+.++...+...++-.++|...+|+.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45555666666666666666776666554
No 143
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.26 E-value=7.4e+02 Score=24.55 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 014634 95 YPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPN 140 (421)
Q Consensus 95 ~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 140 (421)
..++.++.+|+++..+..+...+..++...++....+..+...-++
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788899999999888888888888888888888877777765433
No 144
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=22.09 E-value=1.6e+02 Score=21.46 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=23.7
Q ss_pred cccchhhHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 014634 230 AHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTFIYASMAVFGYLMFGS 275 (421)
Q Consensus 230 ~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~~y~~~~~~gy~~fg~ 275 (421)
|.....+..+.-.+| ++..|++.+. .++.-+-+.+|++.|..||.
T Consensus 26 CIFAfidFSK~~s~~~~~~wRalSii-~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 26 CVFAFVDFSKNTSNVTDYVWRALSVT-CFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHhhhhhhccCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 333334444444345 3444554433 33334455677888888883
No 145
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=22.07 E-value=7.5e+02 Score=24.21 Aligned_cols=239 Identities=13% Similarity=0.054 Sum_probs=119.9
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhhhc-----cccc-cccccccccccccCchhhhhhhhhhccccccchhhHHh-hh
Q 014634 169 WLDNLSLLSYVSASGVLASIITLGSIFST-----GAFD-GVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYT-SM 241 (421)
Q Consensus 169 ~~~~~~~l~~~s~~~~~~~~~~~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~-~m 241 (421)
.+.+++..+..+..+.+.....++..... .... ..+..... ..-...++...-....-..+++...+..+ +.
T Consensus 147 ~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 147 NLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSF-SSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchh-hhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 56677777777777765555554443333 1111 11111110 11112333333333444446666666633 45
Q ss_pred hccccchh-----HHHHHHHHHHHHHHHHHhHHHHhhh---cchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccch
Q 014634 242 KKKHQFSH-----VLLVCFFLCTFIYASMAVFGYLMFG---SEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTP 313 (421)
Q Consensus 242 ~~p~~~~~-----~~~~~~~~~~~~y~~~~~~gy~~fg---~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~ 313 (421)
++=++..+ +..+-......-|+.+|-..-..+- ++..++.+.+++..+.....+...+...++..+|+...
T Consensus 226 ~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~- 304 (411)
T KOG1305|consen 226 KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN- 304 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-
Confidence 54332222 2233333344445544432222211 22334455667877777777888888889999999888
Q ss_pred HHHHHHHhcc----cccCCCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCc-cccc
Q 014634 314 VVNTIKMRFS----TQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAY-RRHG 388 (421)
Q Consensus 314 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~-~~~~ 388 (421)
+++.+.+... .+++++..-.+.-......-.+--..+.++-.+++.+++.+.+.+.-.+=-+--.|-..++ ...+
T Consensus 305 l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~ 384 (411)
T KOG1305|consen 305 LDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKKSREPLGAL 384 (411)
T ss_pred HHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccccccchHHH
Confidence 5555554443 6666655533333333332333333445556666666665555443333323223214333 2334
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 014634 389 CEMMAILGIVSLAVLIAVVGT 409 (421)
Q Consensus 389 ~~~~~~~~~~~~g~~~~~~g~ 409 (421)
..++....+..+|+...+.-.
T Consensus 385 ~~~~~~~~~~i~~~~~~i~~~ 405 (411)
T KOG1305|consen 385 IFLILGVLLSIIGVAVMIYDL 405 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777665543
No 146
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=21.21 E-value=1.5e+02 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHHhhhhhhhchhHHHHHh
Q 014634 31 KTSFFKTCFNGVNALSGVGILSTPYALAS 59 (421)
Q Consensus 31 ~~s~~~~~~~li~~~iG~GiL~LP~~~~~ 59 (421)
...+..+..+-+...+|+=+--+|+.+..
T Consensus 91 ~~~~~~al~sgls~~~G~llPLlp~~~~~ 119 (175)
T cd02437 91 KADLPSGLIQGISTTLGGLLPLLPFLPFD 119 (175)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455667777777777666677887654
No 147
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.53 E-value=2.2e+02 Score=18.63 Aligned_cols=28 Identities=4% Similarity=0.153 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcch
Q 014634 250 VLLVCFFLCTFIYASMAVFGYLMFGSEV 277 (421)
Q Consensus 250 ~~~~~~~~~~~~y~~~~~~gy~~fg~~~ 277 (421)
-+.+-..+..++|+++|+.-+..+.++.
T Consensus 24 fViik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 24 FVIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 3445567888999999997766665543
No 148
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.42 E-value=5.8e+02 Score=25.55 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=29.2
Q ss_pred HHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014634 95 YPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLEN 136 (421)
Q Consensus 95 ~~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 136 (421)
-.|.+++.+|++. +..-+.+.+.++|..-+.+-..+..+..
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3567889999988 8888888888888765555444444433
Done!