BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014639
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 156/303 (51%), Gaps = 57/303 (18%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPDPGDMSKL-LLAARKIRKATSTDFLIS 178
+P P+ I+C I R++ G + Y L D D K+ LLA RK +K+ ++++LIS
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYF-LHLDREDGKKVFLLAGRKRKKSKTSNYLIS 82
Query: 179 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 238
+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+ +
Sbjct: 83 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGT 129
Query: 239 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXX 298
+A + YE NVL +GPR+M S I G N E++
Sbjct: 130 LRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVSIRPR 171
Query: 299 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 358
L + + + +E L+NK P W++ Q + LNF GRVT ASV
Sbjct: 172 NEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQASV 219
Query: 359 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 418
KNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 220 KNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 270
Query: 419 ACE 421
ACE
Sbjct: 271 ACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 156/303 (51%), Gaps = 57/303 (18%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPDPGDMSKL-LLAARKIRKATSTDFLIS 178
+P P+ I+C I R++ G + Y L D D K+ LLA RK +K+ ++++LIS
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYF-LHLDREDGKKVFLLAGRKRKKSKTSNYLIS 74
Query: 179 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 238
+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+ +
Sbjct: 75 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGT 121
Query: 239 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXX 298
+A + YE NVL +GPR+M S I G N E++
Sbjct: 122 LRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCIRPR 163
Query: 299 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 358
L + + + +E L+NK P W++ Q + LNF GRVT ASV
Sbjct: 164 NEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQASV 211
Query: 359 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 418
KNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 212 KNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 262
Query: 419 ACE 421
ACE
Sbjct: 263 ACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 57/303 (18%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPDPGDMSKL-LLAARKIRKATSTDFLIS 178
+P P+ I+C I R++ G + Y L D D K+ LLA RK +K+ ++++LIS
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYF-LHLDREDGKKVFLLAGRKRKKSKTSNYLIS 74
Query: 179 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 238
+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+ +
Sbjct: 75 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGT 121
Query: 239 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXX 298
+A + YE NVL +GPR+M S I G N E++
Sbjct: 122 LRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCIRPR 163
Query: 299 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 358
L + + + +E L+NK P W++ + + LNF GRVT ASV
Sbjct: 164 NEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTESYVLNFHGRVTQASV 211
Query: 359 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 418
KNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 212 KNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 262
Query: 419 ACE 421
ACE
Sbjct: 263 ACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 153/303 (50%), Gaps = 61/303 (20%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPDPGDMSKLLLAARKIRKATSTDFLISL 179
+P P+ ++C + R++ G Y Y L D + LLA RK +++ + ++LIS+
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMYPSYF-LHLDT-EKKVFLLAGRKRKRSKTANYLISI 88
Query: 180 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSS 239
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 89 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------------- 135
Query: 240 NYSVATISYELNVLRTRGPRRMQCTMHSIP-ISAIQEGGTAPTPIEFTNCCEEQIXXXXX 298
+A + YE NVL RGPRRM IP +SA E PI N +
Sbjct: 136 --ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENE----RVPIRPRNASD-------- 178
Query: 299 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 358
LV + + +L +E L NK P W++ + LNF+GRVT ASV
Sbjct: 179 ------GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASV 222
Query: 359 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 418
KNFQ+V A +P + ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD K
Sbjct: 223 KNFQIVHADDP---------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKL 273
Query: 419 ACE 421
ACE
Sbjct: 274 ACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 59/296 (19%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPDPGDMSKLLLAARKIRKATSTDFLISL 179
+P P+ ++C + R++ G Y Y L D + LLA RK +++ + ++LIS+
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMYPSYF-LHLDT-EKKVFLLAGRKRKRSKTANYLISI 64
Query: 180 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSS 239
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 65 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ------------- 111
Query: 240 NYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXXX 299
+A + YE NVL RGPRRM + + SA E PI N +
Sbjct: 112 --ELAAVIYETNVLGFRGPRRMTVIIPGM--SAENE----RVPIRPRNASD--------- 154
Query: 300 XXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVK 359
LV + + +L +E L NK P W++ + LNF+GRVT ASVK
Sbjct: 155 -----GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASVK 199
Query: 360 NFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 415
NFQ+V A +P+ ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD
Sbjct: 200 NFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3VA8|A Chain A, Crystal Structure Of Enolase Fg03645.1 (Target Efi-502278)
From Gibberella Zeae Ph-1 Complexed With Magnesium,
Formate And Sulfate
Length = 445
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 62 NMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSW 98
++PP +L D +Q I + W R AS+C +W
Sbjct: 298 HLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATW 334
>pdb|3BBO|6 Chain 6, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 104
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 1 MALKNIVKEMRDGIGNISRRGSERR-CSENGKHNMRRRGRSYIAPEG 46
M +++ VK+M + + RRG CS N KH R+ G S A EG
Sbjct: 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,642,989
Number of Sequences: 62578
Number of extensions: 436506
Number of successful extensions: 680
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 13
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)