Query 014639
Match_columns 421
No_of_seqs 218 out of 361
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 1E-126 3E-131 944.5 27.2 353 1-421 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 2.2E-83 4.7E-88 618.7 14.7 239 124-415 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.7 4.8E-19 1E-23 183.1 4.1 77 327-415 485-561 (565)
4 PF12043 DUF3527: Domain of un 98.1 0.00036 7.7E-09 71.6 19.5 74 325-416 271-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 6.2E-06 1.3E-10 60.1 0.7 36 60-103 1-36 (47)
6 PF00646 F-box: F-box domain; 97.7 8.8E-06 1.9E-10 58.9 -0.3 39 59-105 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 7.9E-05 1.7E-09 77.1 1.9 41 58-105 2-42 (373)
8 smart00256 FBOX A Receptor for 97.2 6.2E-05 1.3E-09 52.0 -0.4 34 63-104 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 89.0 0.18 3.9E-06 51.9 1.2 43 57-102 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 61.1 2.2 4.7E-05 44.4 -0.7 67 60-134 98-167 (419)
11 PF04525 Tub_2: Tubby C 2; In 36.0 1.1E+02 0.0024 28.3 6.4 79 128-209 61-144 (187)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.5e-126 Score=944.48 Aligned_cols=353 Identities=50% Similarity=0.798 Sum_probs=305.6
Q ss_pred CchhhHHHHhccccccccccccccccccCCCcccccCCccccCCCCCCCCcccccccCcCCCCCHHHHHHHHHHHHhcCC
Q 014639 1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQT 80 (421)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ppell~~i~~r~e~se~ 80 (421)
|+++++++++++.. +++++..+ ++++. +...++.... .....+.|++||||||+|+|+|+||+|+
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~------~~~~~-~~~~~~~~~~--s~~~~~~~~~l~~~~L~d~~~r~eese~ 65 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGS------GTKGP-EDKSEDSGFP--SPSDQSLWAALPPELLSDVLKRDEESED 65 (355)
T ss_pred CCccCccCCCCccc------chhccccc------ccccC-CCccCCcCCc--cccccchhhcCCHhHHHHHhhhcccccc
Confidence 78889999888776 44443321 12211 1112221111 1112289999999999999999999999
Q ss_pred CCCCccceeeccccChhHHHHhHhhhcCccccCcccccccccCCCCCCCceEEEEEeecCCceEEEEecCCCCCC--CCC
Q 014639 81 SWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPDPG--DMS 158 (421)
Q Consensus 81 ~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~g~~tfp~sLkqPgPrd~~iQC~I~R~K~~~tY~LYL~l~~~~~--e~g 158 (421)
.||+|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+++. |++
T Consensus 66 ~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~ 145 (355)
T KOG2502|consen 66 TWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNK 145 (355)
T ss_pred ccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988875 779
Q ss_pred ceEEeeeecccCCCeeEEEeccCCCCcCCCCceeeeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCC
Q 014639 159 KLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 238 (421)
Q Consensus 159 KfLLAARK~rr~~tS~YiISld~~dlSr~s~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~ 238 (421)
||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.. .+|+++ ++|+
T Consensus 146 kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~----------~~r~~~------~~~~ 209 (355)
T KOG2502|consen 146 KFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN----------PSRRFN------KVPS 209 (355)
T ss_pred eeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC----------cccccc------cCCc
Confidence 999999999999999999999999999999999999999999999999999732 234444 5899
Q ss_pred CceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 014639 239 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGP 318 (421)
Q Consensus 239 ~~~eva~VsYe~NVLg~rGPRrM~~vm~~IP~s~i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~~~~~~~~ 318 (421)
++|+||+|+||+||||+||||||+|+||+||.++ ++|++|.|++..+.. .+ .+.
T Consensus 210 ~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l----~r~--------------- 263 (355)
T KOG2502|consen 210 GRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL----FRS--------------- 263 (355)
T ss_pred ccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh----hhc---------------
Confidence 9999999999999999999999999999999887 899999886542211 11 011
Q ss_pred CCCCCCCCCceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEcc
Q 014639 319 LESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYR 398 (421)
Q Consensus 319 ~~~~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRvt~aSvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~ 398 (421)
.+..++++++|+||.|+|||++||||||||||||+||||||||||. .++++|||||||||||+|||||+
T Consensus 264 --~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYr 332 (355)
T KOG2502|consen 264 --QNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYR 332 (355)
T ss_pred --cccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeeccc
Confidence 1123689999999999999999999999999999999999999998 56799999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCcccCC
Q 014639 399 YPLSALQAFAICLSSFDTKPACE 421 (421)
Q Consensus 399 yPlS~~QAFaI~LssfdtKlACE 421 (421)
||||+||||||||||||+|||||
T Consensus 333 YPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 333 YPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred CccHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=2.2e-83 Score=618.65 Aligned_cols=239 Identities=54% Similarity=0.906 Sum_probs=182.3
Q ss_pred CCCCCCceEEEEEeecCCc------eEEEEecCCCCCCCCCceEEeeeecccCCCeeEEEeccCCCCcCCCCceeeeeee
Q 014639 124 PGPRDAPIQCYIRRERPTG------TYRLYLGLSPDPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRS 197 (421)
Q Consensus 124 PgPrd~~iQC~I~R~K~~~------tY~LYL~l~~~~~e~gKfLLAARK~rr~~tS~YiISld~~dlSr~s~~yVGKLRS 197 (421)
|||+|++|||+|+|||+|+ +|+|||+ .+++||||||||++++++||||||++++|+||++++|||||||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~-----~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrs 75 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLE-----GENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRS 75 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEE-----STTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccc-----cCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecc
Confidence 8999999999999999987 4566664 2788999999999999999999999999999999999999999
Q ss_pred ceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCCC
Q 014639 198 NFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGG 277 (421)
Q Consensus 198 NFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~eva~VsYe~NVLg~rGPRrM~~vm~~IP~s~i~~gg 277 (421)
||+||+|+|||+|++++.+. ..+|..+..++|||+|.||+||||++|||||+|+||.|+....++++
T Consensus 76 Nf~GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~ 142 (246)
T PF01167_consen 76 NFLGTEFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGG 142 (246)
T ss_dssp -TTSSEEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----
T ss_pred ccceeEEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccce
Confidence 99999999999997665432 12566778899999999999999999999999999999877766666
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCC-CcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecc
Q 014639 278 TAPTPIEFTNCCEEQIPSSPSPVSKGKK-PLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 356 (421)
Q Consensus 278 ~~p~q~~~~~~~~e~f~~~~~~~~k~k~-~~~~~~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRvt~a 356 (421)
..|.+.. ...+. ...++ .....++.++|+||.|+||++++||+|||+||||+|
T Consensus 143 ~~~~~p~----------------~~~~~~~~~~~----------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~ 196 (246)
T PF01167_consen 143 RVPFQPL----------------NQEKDSLLSRF----------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVA 196 (246)
T ss_dssp B-----S----------------S-CCCSHHHHH----------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-
T ss_pred eeeeecc----------------ccccccccccc----------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecc
Confidence 5544310 00111 00111 122467899999999999999999999999999999
Q ss_pred ccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCC
Q 014639 357 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 415 (421)
Q Consensus 357 SvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~Lssfd 415 (421)
||||||||++ ++++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 197 SvKNFql~~~---------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 197 SVKNFQLVHP---------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp BTTEEEEEBT---------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred ccceeEEEcc---------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 9999999998 7889999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.75 E-value=4.8e-19 Score=183.12 Aligned_cols=77 Identities=42% Similarity=0.744 Sum_probs=71.5
Q ss_pred CceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHH
Q 014639 327 DPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQA 406 (421)
Q Consensus 327 ~~lvL~nK~P~w~e~lq~y~LnF~GRvt~aSvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QA 406 (421)
...++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|+.+.|++||+||+|+.||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa 552 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA 552 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence 3459999999999999999999999999999999999865 4569999999999999999999999999
Q ss_pred HHHHHHcCC
Q 014639 407 FAICLSSFD 415 (421)
Q Consensus 407 FaI~Lssfd 415 (421)
||+||++.-
T Consensus 553 Favalanvt 561 (565)
T KOG2503|consen 553 FAVALANVT 561 (565)
T ss_pred HHHHHhhhh
Confidence 999999864
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.09 E-value=0.00036 Score=71.56 Aligned_cols=74 Identities=20% Similarity=0.400 Sum_probs=55.1
Q ss_pred CCCceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHH
Q 014639 325 AGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSAL 404 (421)
Q Consensus 325 ~~~~lvL~nK~P~w~e~lq~y~LnF~GRvt~aSvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~ 404 (421)
-..+.||.|.. +.+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++
T Consensus 271 gC~L~VL~n~~----------~~~~~~~~~~~~~~~feLf~QG--------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~L 332 (346)
T PF12043_consen 271 GCPLRVLSNQS----------QNSKKSSSSKESSHPFELFVQG--------SKEEDPAFSMVNVKEGLYSVEFHSSLSPL 332 (346)
T ss_pred CCCeEEeCCCC----------ccccccccccccCCceeeeecc--------cccCCCceEEEEccCCeEEEEecCcchHH
Confidence 34677887653 1222355566677778987551 22334899999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 014639 405 QAFAICLSSFDT 416 (421)
Q Consensus 405 QAFaI~Lssfdt 416 (421)
|||+||++-.++
T Consensus 333 QAFSiciA~lh~ 344 (346)
T PF12043_consen 333 QAFSICIAVLHS 344 (346)
T ss_pred HHHHHhheeeec
Confidence 999999987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.80 E-value=6.2e-06 Score=60.10 Aligned_cols=36 Identities=28% Similarity=0.754 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014639 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (421)
Q Consensus 60 w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (421)
|..||+|+|.+|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999888443 68999999999999873
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.66 E-value=8.8e-06 Score=58.90 Aligned_cols=39 Identities=21% Similarity=0.535 Sum_probs=31.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHhh
Q 014639 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (421)
Q Consensus 59 ~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (421)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|++++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999997654 999999999999988654
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.36 E-value=7.9e-05 Score=77.08 Aligned_cols=41 Identities=29% Similarity=0.680 Sum_probs=37.4
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHhh
Q 014639 58 SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (421)
Q Consensus 58 ~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (421)
..|+.||+|||+.|..|+ |++-|++--++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 359999999999999999 99999999999999999977643
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.23 E-value=6.2e-05 Score=52.02 Aligned_cols=34 Identities=26% Similarity=0.752 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014639 63 MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (421)
Q Consensus 63 ~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (421)
||+|++.+|+.++ +. +++.+|+.||+.||.++++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999998 44 7889999999999997743
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=88.99 E-value=0.18 Score=51.87 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=33.0
Q ss_pred cCcCCC---CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHh
Q 014639 57 QSQWAN---MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVT 102 (421)
Q Consensus 57 ~~~w~~---~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 102 (421)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+|||.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999995332 12355789999999877544
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.08 E-value=2.2 Score=44.36 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh--hhcCccccCcccccccccCCCCCCC-ceEEE
Q 014639 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE--IIRTPEQCGLLSFPVSLKQPGPRDA-PIQCY 134 (421)
Q Consensus 60 w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--iv~~pe~~g~~tfp~sLkqPgPrd~-~iQC~ 134 (421)
|..||.|+|.+|.. |=..++...-|+||++|-.++.+ +-...+..|+---|.+|-|=.-|+. .++|-
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 99999999999996 44667788889999999887754 3345566677666777666555653 35553
No 11
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=36.00 E-value=1.1e+02 Score=28.29 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCceEEEEEeecCCc--eEEEEecCCCCCCCCCceEEeeeecc-cCCCeeEEEeccCC-CC-cCCCCceeeeeeeceeec
Q 014639 128 DAPIQCYIRRERPTG--TYRLYLGLSPDPGDMSKLLLAARKIR-KATSTDFLISLVGD-DF-SRTSNTYVGKLRSNFLGT 202 (421)
Q Consensus 128 d~~iQC~I~R~K~~~--tY~LYL~l~~~~~e~gKfLLAARK~r-r~~tS~YiISld~~-dl-Sr~s~~yVGKLRSNFlGT 202 (421)
+|..-..|+|..-.. +|..|.+.+. +..+.+...||.- -...++..+.+... .. .-.+...-=+|+.||++-
T Consensus 61 ~G~~L~~i~~k~~~l~~~w~i~~~~~~---~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~ 137 (187)
T PF04525_consen 61 SGNPLFTIRRKLFSLRPTWEIYRGGGS---EGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDR 137 (187)
T ss_dssp TS-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT
T ss_pred CCCEEEEEEeeecccceEEEEEECCCC---ccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCc
Confidence 355667887754333 9999997321 3345677777651 12223333333321 11 011223334689999999
Q ss_pred EEEEecC
Q 014639 203 KFTIYDS 209 (421)
Q Consensus 203 kFtIYD~ 209 (421)
+|+|||.
T Consensus 138 ~~~I~~~ 144 (187)
T PF04525_consen 138 SFTIYDS 144 (187)
T ss_dssp --EEEEC
T ss_pred EEEEEEc
Confidence 9999973
Done!