Query 014639
Match_columns 421
No_of_seqs 218 out of 361
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2.8E-88 9.7E-93 660.8 22.4 242 121-421 29-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.4E-85 4.8E-90 632.8 22.3 236 121-415 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 5.4E-07 1.9E-11 65.9 1.2 40 56-103 5-44 (53)
4 2ast_B S-phase kinase-associat 97.0 0.00019 6.3E-09 67.6 1.3 41 55-103 4-44 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00032 1.1E-08 69.1 1.6 39 57-103 48-87 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00041 1.4E-08 70.1 0.7 42 56-104 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.7 0.0075 2.6E-07 58.3 1.1 41 55-103 14-54 (445)
8 3v7d_B Cell division control p 94.6 0.0041 1.4E-07 60.0 -1.3 42 55-104 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.8 0.013 4.6E-07 58.1 -1.1 38 59-104 4-41 (312)
10 3ogk_B Coronatine-insensitive 92.1 0.029 9.9E-07 56.7 0.2 37 60-103 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.8 0.017 5.8E-07 55.9 -1.8 42 55-104 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 28.6 1.3E+02 0.0045 27.1 7.0 16 194-209 147-162 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2.8e-88 Score=660.79 Aligned_cols=242 Identities=40% Similarity=0.682 Sum_probs=183.7
Q ss_pred ccCCCCCCCceEEEEEeecCCc------eEEEEecCCCCCCCCCceEEeeeecccCCCeeEEEeccCCCCcCCCCceeee
Q 014639 121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPDPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGK 194 (421)
Q Consensus 121 LkqPgPrd~~iQC~I~R~K~~~------tY~LYL~l~~~~~e~gKfLLAARK~rr~~tS~YiISld~~dlSr~s~~yVGK 194 (421)
|+||+|+|+++||+|+|||+|+ +|||||+ .++++|||||||+|+++++||+||+|++||||++++||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK 103 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 103 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence 9999999999999999999984 9999995 3678999999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhc
Q 014639 195 LRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQ 274 (421)
Q Consensus 195 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~eva~VsYe~NVLg~rGPRrM~~vm~~IP~s~i~ 274 (421)
|||||+||+|+|||+|++.+. ..+|.++.+++|||+|+||+||||++|||+|+|+||.+ . +
T Consensus 104 LrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~-~ 164 (276)
T 2fim_A 104 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 164 (276)
T ss_dssp EEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 999999999999999954321 23566778899999999999999999999999998643 1 2
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeee
Q 014639 275 EGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVT 354 (421)
Q Consensus 275 ~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRvt 354 (421)
.|+..|.+. ...+++ ...++ .+...++.++|+||+|+|||++|||||||+||||
T Consensus 165 ~~~~~~~~p---~~~~~~-------------ll~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt 218 (276)
T 2fim_A 165 ENERVPIRP---RNASDG-------------LLVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVT 218 (276)
T ss_dssp TSCBCCCCC---SSTTCS-------------HHHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCC
T ss_pred CCCEecccC---CCcccc-------------cchhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeee
Confidence 233322210 000010 01111 1124578999999999999999999999999999
Q ss_pred ccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014639 355 VASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE 421 (421)
Q Consensus 355 ~aSvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssfdtKlACE 421 (421)
+|||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 219 ~aSvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 219 QASVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp SCCTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 999999999998 6778999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.4e-85 Score=632.83 Aligned_cols=236 Identities=39% Similarity=0.675 Sum_probs=189.2
Q ss_pred ccCCCCCCCceEEEEEeecCCc------eEEEEecCCCCCCCCCceEEeeeecccCCCeeEEEeccCCCCcCCCCceeee
Q 014639 121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPDPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGK 194 (421)
Q Consensus 121 LkqPgPrd~~iQC~I~R~K~~~------tY~LYL~l~~~~~e~gKfLLAARK~rr~~tS~YiISld~~dlSr~s~~yVGK 194 (421)
|+||+|+|++|||+|+|||+|+ +||||++ .++++|||||||+|+++|||||||+|++||||++++||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 9999999999999999999984 8999996 2567899999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhc
Q 014639 195 LRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQ 274 (421)
Q Consensus 195 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~eva~VsYe~NVLg~rGPRrM~~vm~~IP~s~i~ 274 (421)
|||||+||+|+|||+|++.+. ..+|.++.+++|||+|+||+||||++|||+|+|+||.+ . +
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~-~ 140 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 140 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 999999999999999965331 23566778899999999999999999999999998643 1 2
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeee
Q 014639 275 EGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVT 354 (421)
Q Consensus 275 ~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRvt 354 (421)
.|+..|.+. ...+++ ...++ .+...++.++|+||+|+|||++|||||||+||||
T Consensus 141 ~~~~~~~~p---~~~~~~-------------~~~~~----------~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt 194 (246)
T 3c5n_A 141 ENERVPIRP---RNASDG-------------LLVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVT 194 (246)
T ss_dssp TSCBCCCCC---SSTTSS-------------HHHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTSCC
T ss_pred CCCEeeccC---CCcccc-------------chhhh----------hccCCcceEEEeccCCcccccCCEEEEecCCeee
Confidence 233332211 000010 01111 1224578999999999999999999999999999
Q ss_pred ccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCC
Q 014639 355 VASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 415 (421)
Q Consensus 355 ~aSvKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~Lssfd 415 (421)
+|||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||
T Consensus 195 ~aSvKNFqLv~~---------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 195 QASVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp BCCTTCEEEEBT---------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred ccccceEEEEec---------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999999999998 6788999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.13 E-value=5.4e-07 Score=65.88 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=32.6
Q ss_pred ccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014639 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (421)
Q Consensus 56 ~~~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (421)
++..|+.||+|+|..|+.++ | .++++.||.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 3 4678999999999999764
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.96 E-value=0.00019 Score=67.58 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=33.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014639 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (421)
Q Consensus 55 ~~~~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (421)
.++..|+.||+|+|..|+..+ |.+ +++.||.||++|++++.
T Consensus 4 ~~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred cccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 346789999999999999999 333 68999999999999873
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.81 E-value=0.00032 Score=69.14 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=33.7
Q ss_pred cCcCCCCCHHHHHHHHHHHHhcCCCCCCcccee-eccccChhHHHHhH
Q 014639 57 QSQWANMPPELLLDIIQRIEASQTSWPARRDVV-ACASVCKSWRAVTK 103 (421)
Q Consensus 57 ~~~w~~~ppell~~i~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~~ 103 (421)
....+.||+|||.+|+.|| |.+ +++ .|+.|||.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhc
Confidence 3468899999999999999 764 587 99999999999764
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.61 E-value=0.00041 Score=70.12 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred ccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014639 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (421)
Q Consensus 56 ~~~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (421)
+...|+.||+|+|..|+.++ |..+++++|+.|||+|+++...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 7778899999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.73 E-value=0.0075 Score=58.26 Aligned_cols=41 Identities=24% Similarity=0.589 Sum_probs=34.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014639 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (421)
Q Consensus 55 ~~~~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (421)
....-++.||+|||..|+..++. ++++.||.|||.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 34566899999999999999943 558999999999998774
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.57 E-value=0.0041 Score=60.03 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=35.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014639 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (421)
Q Consensus 55 ~~~~~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (421)
.+..-++.||+|||..|+..| |. ++++.|+.|||.|++++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 455668899999999999999 43 4689999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.81 E-value=0.013 Score=58.10 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014639 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (421)
Q Consensus 59 ~w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (421)
-|.+||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999943 4589999999999998854
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.13 E-value=0.029 Score=56.69 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014639 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (421)
Q Consensus 60 w~~~ppell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (421)
.+.||+|+|..|+..+ +..+++++|+-|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4579999999999999 456788999999999999853
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.81 E-value=0.017 Score=55.86 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=34.5
Q ss_pred cccCcCCCCCHH----HHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014639 55 VEQSQWANMPPE----LLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (421)
Q Consensus 55 ~~~~~w~~~ppe----ll~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (421)
.+.+-.+.||+| ||..|+..|+. +++..||.|||.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455567889999 99999999954 5688999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=28.60 E-value=1.3e+02 Score=27.10 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=9.0
Q ss_pred eeeeceeecEEEEecC
Q 014639 194 KLRSNFLGTKFTIYDS 209 (421)
Q Consensus 194 KLRSNFlGTkFtIYD~ 209 (421)
++..||+...|.|+|.
T Consensus 147 ~I~G~~~~~~f~I~~~ 162 (217)
T 1zxu_A 147 RVKGSWLERSCVVYAG 162 (217)
T ss_dssp EEESCTTTTCCEEEET
T ss_pred EEEEeEeCCEEEEEEC
Confidence 4445566666666654
Done!