BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014640
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 306/426 (71%), Positives = 356/426 (83%), Gaps = 9/426 (2%)
Query: 1 MLIYRGLSRIS-RISKKTSF--GRRWLPSH--PLLSGASHSAAAAAADSSVKVLGCREAY 55
ML R ++RIS + + SF + L SH ++ HS + DS K CR Y
Sbjct: 1 MLFTRSVARISSKFLRNRSFYGSSQSLASHRFAIIPDQGHSCS----DSPHKGYVCRTTY 56
Query: 56 SWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 115
S P G HQ++HQSSS++EE+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEY
Sbjct: 57 SLKSPVFGGFSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEY 116
Query: 116 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 175
FFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR RQ+ IAEITEMIHVA
Sbjct: 117 FFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVA 176
Query: 176 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 235
SLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT V
Sbjct: 177 SLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAV 236
Query: 236 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 295
EHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+Y
Sbjct: 237 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEY 296
Query: 296 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE 355
G+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +
Sbjct: 297 GRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEK 356
Query: 356 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 415
D NVDIALEYLGKS+GIQ+ RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHR
Sbjct: 357 DPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHR 416
Query: 416 VITRNK 421
VITRNK
Sbjct: 417 VITRNK 422
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 555 bits (1429), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/375 (72%), Positives = 322/375 (85%)
Query: 47 KVLGCREAYSWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEV 106
KV+GCR A S LH ++Q+ S EEQ DPF LVADELS+LA RLRSMV AEV
Sbjct: 56 KVVGCRGATFVSSRWLHDAQYQVRQDGLSRSEEQQDPFELVADELSLLANRLRSMVAAEV 115
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
PKLASAAEYFFK+G EGKRFRPTVLLLMA+AL + + GV LA +LRTRQQ IA
Sbjct: 116 PKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLSDSTEVGVLTILANKLRTRQQNIA 175
Query: 167 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 226
EITEMIHVASLLHDDVLDDADTRRG+ SLN +MGNKL+VLAGDFLLSRACVALA+L NTE
Sbjct: 176 EITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALAALGNTE 235
Query: 227 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 286
VV+L+AT VEHLVTGETMQ++TS +QR SMDYY+QKTYYKTASLISNSCKA+A+LAG TA
Sbjct: 236 VVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAILAGHTA 295
Query: 287 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 346
+V++LA++YG+NLGLA+QLIDDVLDFTGTSASLGKGSL+DIRHGIITAP+L+AMEEFPQL
Sbjct: 296 DVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAMEEFPQL 355
Query: 347 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 406
VV++GF++ +NV++AL+YL KSRGI+KT+ELA +HAN A AI++LP+++DEDV SR
Sbjct: 356 HEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDDEDVLTSR 415
Query: 407 RALLDLTHRVITRNK 421
RAL+D+T RVITR K
Sbjct: 416 RALIDITERVITRTK 430
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 224/377 (59%), Gaps = 44/377 (11%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM--ATAL 138
+DP LVA E+ L +R ++ + P L AA+Y+ + EGK RP ++LLM ATAL
Sbjct: 81 IDPLRLVAGEMKFLTGNIRKLLGSGHPSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATAL 138
Query: 139 NVRVPEPLHDGVEDALA---------------------------TELRTRQQCIAEITEM 171
+ P+ ++ + A T++ Q+ +AEITE+
Sbjct: 139 CPKAPQRQQSTLQASAAIDTSISPLNILSDFNPSDATPVSIPADTDILPSQRRLAEITEL 198
Query: 172 IHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLL 231
IH ASLLHDDV+D +++RRG S N GNK+AVLAGDFLL RA VALA L++ EVV LL
Sbjct: 199 IHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLAGDFLLGRASVALARLRHAEVVELL 258
Query: 232 ATVVEHLVTGETMQM-TTSSDQRC------SMDYYMQKTYYKTASLISNSCKAIALLAGQ 284
ATV+ +LV GE MQ+ T+ D++ ++ YY+QKTY KTASLIS SC+A ALL G
Sbjct: 259 ATVIANLVEGEFMQLKNTARDEKNPKWSEETLTYYLQKTYLKTASLISKSCRASALLGGA 318
Query: 285 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 344
A A+ YGKNLGLA+QL+DD+LD+T + LGK + +D+ G+ TAP+LFA + P
Sbjct: 319 DAATVDAAYLYGKNLGLAFQLVDDMLDYTRSEKELGKPAGADLELGLATAPLLFAWKTMP 378
Query: 345 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 404
+L +V + FE + A E + +S GI++TR LA +A A AI P++ +D
Sbjct: 379 ELGPLVGRKFEKEGDAARARELVLQSNGIEQTRALAQDYAEKAIEAISGFPDSEAKD--- 435
Query: 405 SRRALLDLTHRVITRNK 421
L+++ + + RNK
Sbjct: 436 ---GLIEMAVKTLKRNK 449
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 261 bits (667), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 227/370 (61%), Gaps = 27/370 (7%)
Query: 60 PALHGIRHQIHHQSSSVI--------EEQLDPFSLVADELSILAKRLRSMVVAEVPKLAS 111
P +H I Q H ++ ++ E+ DPF L +L L + +R + +L
Sbjct: 59 PTMHSI-SQFHQRTPAMCSCRQTQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKD 117
Query: 112 AAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEM 171
+EY+F +GK FRP +++LMA A N+ H+ A E++ Q+ IA + EM
Sbjct: 118 MSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIALVAEM 165
Query: 172 IHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLL 231
IH A+L+HDDV+DDA +RRG ++N + G K AVLAGD +LS A VALA + NT VV++L
Sbjct: 166 IHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASVALARIGNTAVVSML 225
Query: 232 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL 291
A V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L V +
Sbjct: 226 AQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEI 285
Query: 292 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVE 351
A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++ GI T P+LFA ++FP++ ++
Sbjct: 286 AYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMNAMIM 345
Query: 352 QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 411
+ F +VD A +Y+ +S G+Q+T LA ++ + A I L + + D AL+
Sbjct: 346 RRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERD------ALIQ 399
Query: 412 LTHRVITRNK 421
L+ V+TR+K
Sbjct: 400 LSESVLTRDK 409
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 239/407 (58%), Gaps = 66/407 (16%)
Query: 72 QSSSVIEEQL---DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRP 128
Q+S ++E DPFS+V+ E+S LA + S++ + P L A Y+F+ EGK RP
Sbjct: 55 QASRLVETDTPIRDPFSIVSQEMSTLANNIGSLIGSGHPTLNKVATYYFQS--EGKHVRP 112
Query: 129 TVLLLMATAL--------------------NVRV--PEP-----------LHDGVE---- 151
++LL++ AL NV PEP LH G+
Sbjct: 113 LIVLLLSRALSAIPESERDRGTFDASDVTENVGELNPEPSINDPLSPIEILH-GINPDIV 171
Query: 152 --------DALATE---LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 200
D L E + +Q+ +AEI EMIH ASLLHDDV+D++ TRRG + N G
Sbjct: 172 LNPLSRPSDPLPYESNGILPKQRRLAEIVEMIHTASLLHDDVIDNSATRRGSPTGNVAFG 231
Query: 201 NKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM------TTSSDQRC 254
NK+A+LAGDFLL RA VA+A L+N EV+ LL+T + +LV GE MQ+ + +
Sbjct: 232 NKMAILAGDFLLGRASVAIARLRNAEVIELLSTTIANLVEGEFMQLKNTIVDNSEIANKA 291
Query: 255 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314
+ +YY+ KTY KTASL+S SC+A A+L+G + ++ +GKNLGL +Q++DD+LD++
Sbjct: 292 TFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDASYKFGKNLGLCFQVVDDMLDYSE 351
Query: 315 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 374
+ LGK + +D++ G+ TAP+LFA E++P+L ++++ F+ +V+ A + ++ G+
Sbjct: 352 GESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKRKFDGPGDVERARFLVQQADGLS 411
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
+TRELA K+ + A A +D LP ++SR AL +LT +++ R+K
Sbjct: 412 RTRELAQKYCDEAVANLDLLP------YSESREALRNLTMKMMNRSK 452
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 207/315 (65%), Gaps = 26/315 (8%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
P L+S + Y+F++ +GKR RPT++LL++ AL++ + Q +A
Sbjct: 168 PILSSISSYYFEL--KGKRIRPTIVLLLS----------------KALSSTVHGSQLKLA 209
Query: 167 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 226
EI EMIH ASL+HDDV+D+A TRR + S+N NKLA+L GD+LL+RA V L++++N +
Sbjct: 210 EIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCGDYLLARASVVLSTIRNPD 269
Query: 227 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 286
V ++T + LV GE MQ S+ S D Y+QKTY KT SLI+NSC++ A+L+G +
Sbjct: 270 VTECMSTALAELVEGEFMQ--AKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADS 327
Query: 287 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 346
+ ++ ++GKNLGLA+Q++DD+LD+TG++ GK + D+ G+ TAP+L+A +EFPQL
Sbjct: 328 NIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQL 387
Query: 347 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 406
++++ F + +V+ A + S+GI+KTR LA+++ N A ++ LP+ ++SR
Sbjct: 388 EKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQ------SESR 441
Query: 407 RALLDLTHRVITRNK 421
L+ L+H V+TR K
Sbjct: 442 DLLITLSHIVVTRTK 456
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 213/344 (61%), Gaps = 18/344 (5%)
Query: 78 EEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATA 137
E+ DPF L +L L + +R ++ +L +EY+F +GK FRP ++ LMA A
Sbjct: 90 EKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDG--KGKAFRPIIVALMARA 147
Query: 138 LNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 197
N+ H ++ Q+ IA I EMIH ASL+HDDV+DDA +RRG ++N
Sbjct: 148 CNIHHNNSRH----------VQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNK 197
Query: 198 VMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD 257
+ G K AVLAGD +LS A +ALA + NT V+++L V+E LV GE +Q+ + ++
Sbjct: 198 IWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENENERFA 257
Query: 258 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 317
+Y++KT+ KTASLI+NSCKA+++L V +A+ YGKN+G+A+QLIDDVLDFT S
Sbjct: 258 HYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSD 317
Query: 318 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 377
+GK + +D++ G+ T P+LFA ++FP++ ++ + F +VD A +Y+ +S G+Q+T
Sbjct: 318 QMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTT 377
Query: 378 ELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
LA ++ + A I L + + D AL+ L+ V+TR+K
Sbjct: 378 YLAQQYCHEAIREISKLRPSPERD------ALIQLSEIVLTRDK 415
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 208/336 (61%), Gaps = 22/336 (6%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
F+ V +L +L L+ +V A P L +AAE+ F+ G GKR RP ++LL++ A
Sbjct: 8 FAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT----- 60
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
L EL R + +AEITEMIH ASL+HDDV+D+AD RR + ++N + N++
Sbjct: 61 ---------LLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRV 111
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
AVLAGDFL +++ LA+L N EVV LL+ V+ GE +Q D ++ Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKS 171
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
Y+KTASLI+NS KA +L+ +V ++YGK+LGLA+Q++DD+LDFT + LGK +
Sbjct: 172 YFKTASLIANSAKAAGVLSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPA 231
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 383
SD+ G ITAP LFAME++P L ++E+ F + +++ ALE + + GI+++RELA
Sbjct: 232 GSDLISGNITAPALFAMEKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQ 291
Query: 384 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
A LA + L +++ R +LL+L V+ R
Sbjct: 292 AQLARQHLSVL------EMSAPRESLLELVDYVLGR 321
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 202/312 (64%), Gaps = 13/312 (4%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+VAD+L L L+S+V AE P L SAAE F G GKR RP ++ L++ A
Sbjct: 54 LEVVADDLLKLNNNLKSLVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT----- 106
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
E A EL T Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++
Sbjct: 107 ------AELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV 160
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
AVLAGDF+ +++ LA+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+
Sbjct: 161 AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKS 220
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
YYKTASLI+ S ++ A+ +G + + ++YG+NLGL++Q++DD+LDFT ++ LGK +
Sbjct: 221 YYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 280
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 383
SD+ G +TAP++FA+++ PQLR +++ F +++++ A+E + +S GI++ ELA +
Sbjct: 281 GSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREK 340
Query: 384 ANLAAAAIDSLP 395
+A ++ LP
Sbjct: 341 GEIAIQSLQCLP 352
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 215/330 (65%), Gaps = 16/330 (4%)
Query: 72 QSSSVIEEQLDPFSL---VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRP 128
+++++I E++ SL V+D+L L L+S+V AE P L SAAE F G GKR RP
Sbjct: 70 RTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAG--GKRLRP 127
Query: 129 TVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADT 188
++ L++ A E A EL T Q +AEI EMIH ASL+HDDV+DD+
Sbjct: 128 ALVFLVSRAT-----------AELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGM 176
Query: 189 RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 248
RRG +++ + G ++AVLAGDF+ +++ LA+L+N EV+ L++ V++ +GE Q +T
Sbjct: 177 RRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQAST 236
Query: 249 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDD 308
D ++D Y+ K+YYKTASL+++S ++ A+ +G + + ++YG+NLGL++Q++DD
Sbjct: 237 LFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDD 296
Query: 309 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLG 368
+LDFT ++ LGK + SD+ G +TAP++FA+++ P+LR +++ F +S ++ A++ +
Sbjct: 297 ILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVH 356
Query: 369 KSRGIQKTRELAVKHANLAAAAIDSLPENN 398
+S GI++ +ELA + +LA + LP++
Sbjct: 357 RSGGIRRAQELAKEKGDLALQNLQCLPKSQ 386
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 235 bits (599), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 197/312 (63%), Gaps = 13/312 (4%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
F +VAD+L L L S+V AE P L SAAE F G GKR RP ++ L++ A
Sbjct: 99 FEVVADDLQRLNDNLLSIVGAENPVLISAAEQIFSAG--GKRMRPGLVFLVSRAT----- 151
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
E A EL + + EI EMIH ASL+HDDVLD++D RRG +++ + G ++
Sbjct: 152 ------AELAGLKELTVEHRRLGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRV 205
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
AVLAGDF+ ++A LA+L+N EV+ L++ V++ +GE Q ++ D +D YM K+
Sbjct: 206 AVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKS 265
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
YYKTASL++ S K A+ + ++VA + +GKNLGL++Q++DD+LDFT ++ LGK +
Sbjct: 266 YYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPA 325
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 383
+D+ G ITAP++FA+E P+LR ++E F + +++ A+E + GI+K +ELA +
Sbjct: 326 ANDLAKGNITAPVIFALENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELAKEK 385
Query: 384 ANLAAAAIDSLP 395
A LA ++ LP
Sbjct: 386 AELALKNLNCLP 397
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 223/384 (58%), Gaps = 25/384 (6%)
Query: 20 GRRWLPS--HPLLSGASHSAAAAAADSSVKVLGCREAYSWSLPALHGIRHQIHHQSSSVI 77
GRR PS + S + + S K + + S + L+GI Q S +
Sbjct: 20 GRRQFPSLAKTVCKFTSSNRSYGGLVGSCKAVPTK---SKEISLLNGI-GQSQTVSFDLK 75
Query: 78 EEQLDP------FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVL 131
+E P F LVA +L L L S+V AE P L SAAE F G GKR RP ++
Sbjct: 76 QESKQPISLVTLFELVAVDLQTLNDNLLSIVGAENPVLISAAEQIFGAG--GKRMRPGLV 133
Query: 132 LLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRG 191
L++ H E A EL T + +AEI EMIH ASL+HDDVLD++D RRG
Sbjct: 134 FLVS-----------HATAELAGLKELTTEHRRLAEIIEMIHTASLIHDDVLDESDMRRG 182
Query: 192 IGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD 251
+++ + G ++AVLAGDF+ ++A LA+L+N EV+ L++ V++ +GE Q ++ D
Sbjct: 183 KETVHELFGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD 242
Query: 252 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 311
+D Y+ K++YKTASL++ S K A+ + +V +++GKNLGL++Q++DD+LD
Sbjct: 243 CDTKLDEYLLKSFYKTASLVAASTKGAAIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILD 302
Query: 312 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSR 371
FT ++ LGK + SD+ G +TAP++FA+E P+LR ++E F ++ +++ A+E + K
Sbjct: 303 FTQSTEQLGKPAGSDLAKGNLTAPVIFALEREPRLREIIESEFCEAGSLEEAIEAVTKGG 362
Query: 372 GIQKTRELAVKHANLAAAAIDSLP 395
GI++ +ELA + A+ A + LP
Sbjct: 363 GIKRAQELAREKADDAIKNLQCLP 386
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 208/335 (62%), Gaps = 22/335 (6%)
Query: 87 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPL 146
V ++L + + L ++ P L++AA++ + VE K+ RP ++LL+A A++
Sbjct: 11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN----- 63
Query: 147 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVL 206
+++T QQ +AE+TE+IH A+LLHDDV+D++ RRG S+N GNK+AV
Sbjct: 64 ---------KKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVF 114
Query: 207 AGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYK 266
AGDFL +++ LA++ N EVV ++ V+ L GE Q T + S+ Y++K++ K
Sbjct: 115 AGDFLFAQSSWYLANINNLEVVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNK 174
Query: 267 TASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 326
TASLI+ SCK+ LL+ + ++YGKNLGLA+Q+IDD+LD T +S +LGK + SD
Sbjct: 175 TASLIAASCKSCCLLSDFDQSLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSD 234
Query: 327 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 386
++ G +TAP+LFA+ + +L ++E+ F + S++ A+ + ++ I+++ +LA +H
Sbjct: 235 LKLGNLTAPVLFALTKNSKLFKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEA 294
Query: 387 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
A +I LP ++++D +L+++ + ++ R K
Sbjct: 295 AINSIKDLPTSSEKD------SLIEIAYDLLNRYK 323
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 210/351 (59%), Gaps = 23/351 (6%)
Query: 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVP 143
L+ +EL ++ +R M+ + L ++Y+ +GK+ RP+++LLM AT+L +
Sbjct: 36 LIKNELEQISPGIRQMLNSNSEFLEECSKYY--TIAQGKQMRPSLVLLMSKATSLCHGID 93
Query: 144 EPL-------HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLN 196
+ D + ++ Q +A+ITEMIH+ASLLHDDV+D A+ RRG S N
Sbjct: 94 RSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSPSSN 153
Query: 197 FVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD----- 251
GN+ ++LAG+F+L+RA A+A L+N +V LLATV+ LV GE +Q+ + D
Sbjct: 154 VAFGNRRSILAGNFILARASTAMARLRNPQVTELLATVIADLVRGEFLQLKNTMDPSSLE 213
Query: 252 -QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 310
++ + DYY++K++ KTASLIS SCKA +L + VA A +YG+ +G A+QL+DDVL
Sbjct: 214 IKQSNFDYYIEKSFLKTASLISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVL 273
Query: 311 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKS 370
D+T +LGK + +D++ G+ TAP+LFA +++P+L ++ F S++ A + +
Sbjct: 274 DYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNRFNHPSDIQRARSLVECT 333
Query: 371 RGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
I++T A ++ A ++ LP+ + +R+AL L +VITR K
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPD------SPARKALFALADKVITRKK 378
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 227/438 (51%), Gaps = 106/438 (24%)
Query: 82 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALN-- 139
+P SLV+ E++ LAK + +++ + P L Y+F+ EGK+ RP ++LL++ AL+
Sbjct: 44 NPISLVSKEMNTLAKNIVALIGSGHPVLNKVTSYYFE--TEGKKVRPLLVLLLSRALSEI 101
Query: 140 ------------VRVPE---------------------PLH--DGVE---------DALA 155
VPE PLH G++ + L
Sbjct: 102 PMTERNHLKIDKSDVPEDPIYSKPSQNQLFQRPASSISPLHILHGIKPLNPLTKGPEPLP 161
Query: 156 TELRTRQQCI-------AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAG 208
E +Q+ I AEI EMIH ASLLHDDV+D +DTRRG S N NK+AVLAG
Sbjct: 162 EETFDKQRGILPKQRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNKMAVLAG 221
Query: 209 DFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS------------------ 250
DFLL RA V+++ L N EVV L++ + +LV GE MQ+ +S
Sbjct: 222 DFLLGRATVSISRLHNPEVVELMSNSIANLVEGEFMQLKNTSIDADIDTIENGHKLLPVP 281
Query: 251 ------------------------DQ--RCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 284
DQ + +YY+ KTY KTA+LIS SC+ A+L+G
Sbjct: 282 SKKLEVKEHDFRVPSRQQGLQLSHDQIIETAFEYYIHKTYLKTAALISKSCRCAAILSGA 341
Query: 285 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 344
+ V +D+G+NLG+ +QL+DD+LDFT + LGK S +D++ GI TAP+LFA +E P
Sbjct: 342 SPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVLFAWKEDP 401
Query: 345 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI-DSLPENNDEDVT 403
L ++ + F + +V+ ++ + GI KT+ LA ++ + A + DSLPE++
Sbjct: 402 SLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPESD----- 456
Query: 404 KSRRALLDLTHRVITRNK 421
+R AL LT+ ++TR K
Sbjct: 457 -ARSALEFLTNSILTRRK 473
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 201/336 (59%), Gaps = 22/336 (6%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
F + EL + L+S+ P L +AA++ F+ G GKR RP ++LL+A + + +
Sbjct: 8 FHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ-- 63
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
E++ Q+ +AEITE+IH ASL+HDDV+D+ TRRG +++ + K+
Sbjct: 64 ------------QEIKPGQRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKI 111
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
AVLAGDFL +++ LA++ N EVV ++ V+ GE Q D S+D Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANIGNLEVVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKS 171
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
+YKTASL++ SC+ A+L +++ + YGK++GLA+Q++DDVLD G++ SLGK S
Sbjct: 172 FYKTASLVAASCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPS 231
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 383
+D +G +TAPILFA+ + +L ++++ F D ++ +AL + KS GI K ++LA +
Sbjct: 232 GADFMNGNLTAPILFALTQEGKLDQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQ 291
Query: 384 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
A + LP+ + +L +LTH +ITR
Sbjct: 292 VQAALCCLQFLPK------SAPVSSLKELTHFIITR 321
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 215 bits (547), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 203/336 (60%), Gaps = 22/336 (6%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
F V EL L K L+++ P L +AA++ F G GKR RP ++ L+A A + +
Sbjct: 8 FYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK-- 63
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
++ T Q+ +AEITE+IH ASL+HDD++D+ TRRG+ +++ + K+
Sbjct: 64 ------------QDINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKI 111
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
AVLAGDFL +++ LA+++N VV ++ V+ GE Q D S+D Y++K+
Sbjct: 112 AVLAGDFLFAQSSWYLANIENLAVVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKS 171
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
+YKTASLI+ SC+ A+L G ++ + YGK++GLA+Q++DDVLD TG++ SLGK +
Sbjct: 172 FYKTASLIAASCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPA 231
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 383
+D+ +G +T+P+LF++ + L ++++ F +S+++ L + +S GI K ++LA +
Sbjct: 232 GADLINGNLTSPLLFSLTQEASLNDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQ 291
Query: 384 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
A + + LP+ + +L +LTH +ITR
Sbjct: 292 VQAALSCLQFLPQ------STPVSSLKELTHFIITR 321
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 216/333 (64%), Gaps = 22/333 (6%)
Query: 87 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPL 146
V +EL +L K L+ +V + P L++A+E+ F GKR RP ++LL++ A
Sbjct: 11 VENELDLLTKNLKKLVGSGHPILSAASEHLF--SASGKRPRPAIVLLISKA--------- 59
Query: 147 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVL 206
+E+ + T +R + +AEITE+IH ASL+HDD+LD++D RRGI +++ G K+A+L
Sbjct: 60 --TMENEIIT---SRHRRLAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAIL 114
Query: 207 AGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYK 266
AGDFL +++ LA+L++ EVV L++ V+ GE + +++ Y++K++YK
Sbjct: 115 AGDFLFAQSSWYLANLESLEVVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYK 174
Query: 267 TASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 326
TASL++ S KA ALL+ VA ++YG++LGLA+Q++DD+LDFT ++ LGK S SD
Sbjct: 175 TASLLAASSKAAALLSHVDLTVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSD 234
Query: 327 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 386
++ G +TAP+LFA+E+ +L ++++ F + + + L+ + +++ I+KTRELA++HA +
Sbjct: 235 LKKGNLTAPVLFALEQNSELIPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQV 294
Query: 387 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
A +++LP ++ S+ AL +T V+ R
Sbjct: 295 AIQCLENLPPSS------SKEALKLITKYVLER 321
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR RP + +L A A+ ++G IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG----------NAHVTIAALIEFIHTATLLHDDV 86
Query: 183 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 242
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 243 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 302
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 303 YQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDS 357
+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NGR 265
Query: 358 SNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 417
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H +
Sbjct: 266 HLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAV 319
Query: 418 TRNK 421
R++
Sbjct: 320 QRDR 323
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR RP + +L A A+ ++G IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG----------NAHVTIAALIEFIHTATLLHDDV 86
Query: 183 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 242
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 243 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 302
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 303 YQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDS 357
+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NGR 265
Query: 358 SNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 417
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H +
Sbjct: 266 HLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAV 319
Query: 418 TRNK 421
R++
Sbjct: 320 QRDR 323
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 174/346 (50%), Gaps = 32/346 (9%)
Query: 81 LDPFSLVAD-ELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALN 139
+D +AD ++ + + + + + ++VP + Y + G GKR RP + +L A +L
Sbjct: 9 IDEIQKLADPDMQKVNQNILAQLNSDVPLIGQLGFYIVQGG--GKRIRPLIAVLAARSLG 66
Query: 140 VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM 199
+ A E IH ASLLHDDV+D++D RRG + N
Sbjct: 67 FEGSNSI-----------------TCATFVEFIHTASLLHDDVVDESDMRRGRATANAEF 109
Query: 200 GNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 259
GN +VL GDF+ +RA +A L++ ++++++A L GE Q+ +D S Y
Sbjct: 110 GNAASVLVGDFIYTRAFQLVAQLESLKILSIMADATNVLAEGEVQQLMNVNDPETSEANY 169
Query: 260 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319
M+ Y KTA L + +A A++AG T DYG+ LG A+QL+DDVLD++ + +L
Sbjct: 170 MRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQAL 229
Query: 320 GKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 374
GK D+ G T P+L AM ++ +R +EQG + + +D L + + + +
Sbjct: 230 GKNVGDDLAEGKPTLPLLHAMRHGNAQQAALIREAIEQGGKREA-IDEVLAIMTEHKSLD 288
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
A + A A AI+ LPE ++ ++AL+ L + + RN
Sbjct: 289 YAMNRAKEEAQKAVDAIEILPE------SEYKQALISLAYLSVDRN 328
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 162/316 (51%), Gaps = 20/316 (6%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+S ++D+L+ + + L V +E L AA + + G GKR RP +LL A
Sbjct: 7 YSFLSDDLAAVEEELERAVQSEYGPLGEAALHLLQAG--GKRIRPVFVLLAARF------ 58
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
G D R + +A E+IH+ASL+HDDV+DDAD RRG ++ N+
Sbjct: 59 -----GQYDL------ERMKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRF 107
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
A+ GD+L +R+ +A L N +LA + + GE Q+ + Y+++
Sbjct: 108 AMYTGDYLFARSLERMAELGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRI 167
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KTA LI+ SC+ AL AG + + +G +G+++Q+ DD+LDFTGT LGK +
Sbjct: 168 RRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPA 227
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFE-DSSNVDIALEYLGKSRGIQKTRELAVK 382
SD+ G +T P+L+A+ + + G E D + + + + ++ I+++ L+ +
Sbjct: 228 GSDLLQGNVTLPVLYALSDERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSDR 287
Query: 383 HANLAAAAIDSLPENN 398
+ + A +D LP N
Sbjct: 288 YLDKALHLLDGLPMNE 303
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 164/314 (52%), Gaps = 22/314 (7%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+S + D++ ++ + L V ++ P L+ A + + G GKR RP +LL + +
Sbjct: 35 YSFLNDDIDVIERELEQTVRSDYPLLSEAGLHLLQAG--GKRIRPVFVLLSGMFGDYDI- 91
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
+ + +A EMIH+ASL+HDDV+DDA+ RRG ++ N++
Sbjct: 92 ----------------NKIKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKWDNRI 135
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
A+ GD++L+ + + + + +L+ + + GE Q+ + ++ Y+++
Sbjct: 136 AMYTGDYMLAGSLEMMTRINEPKAHRILSQTIVEVCLGEIEQIKDKYNMEQNLRTYLRRI 195
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KTA LI+ SC+ A+ +G ++ + +G +G++YQ+IDD+LDFT T LGK
Sbjct: 196 KRKTALLIAVSCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPV 255
Query: 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSS--NVDIALEYLGKSRGIQKTRELAV 381
D+ G +T P+L+A++ P L+ ++ +++ ++ +E + K+ I+ + ++
Sbjct: 256 GGDLLQGNVTLPVLYALKN-PALKNQLKLINSETTQEQLEPIIEEIKKTDAIEASMAVSE 314
Query: 382 KHANLAAAAIDSLP 395
+ A +++LP
Sbjct: 315 MYLQKAFQKLNTLP 328
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 160/316 (50%), Gaps = 29/316 (9%)
Query: 94 LAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 153
+ KRL + ++ + AA + G GKR RP +LL L+D +D
Sbjct: 17 VEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDD 65
Query: 154 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 213
L +RT A E++H+ASL+HDD +D++D RRG S++ A+ G FLL+
Sbjct: 66 L---IRT-----AVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLA 117
Query: 214 RACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 273
RA +A++ N++ + + + + GE QM + S Y+++ KTA LI
Sbjct: 118 RALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEA 177
Query: 274 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333
SC AL + + +G +G++YQ+IDD+LD+T A+LGK SDIR+G IT
Sbjct: 178 SCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHIT 237
Query: 334 APILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYL---GKSRGIQKTRELAVKHAN 385
P++ A+ ++ +L VV+ S++ D +Y+ K GI+ L+ K+ +
Sbjct: 238 YPLMAAIANLKEQDDDKLEAVVKH--LTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGD 295
Query: 386 LAAAAIDSLPENNDED 401
A + L ++N +D
Sbjct: 296 KAKYHLSQLQDSNIKD 311
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 167/322 (51%), Gaps = 25/322 (7%)
Query: 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 145
L++DELS +A ++R +V + P L + A + R V+LL++ A P
Sbjct: 72 LLSDELSNIAMQVRKLVGTQHP-LLTTARGLVHDSWNSLQLRGLVVLLISKAAG---PSS 127
Query: 146 LHDGVEDA-LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKL 203
++ ++ + + + + Q+ +AEITE+IH+A L+H +++ + + G L + GNK+
Sbjct: 128 VNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKI 187
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDY----Y 259
A+L+GDFLL+ AC LA L+NT+VV LLA+ + LV G + +TS + + D +
Sbjct: 188 AILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTW 247
Query: 260 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319
++T+ +L++ SC+A LA AEV +AF YGK++ +++++ DV F S
Sbjct: 248 KEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEKTS- 306
Query: 320 GKGSLSDIRHGIITAPILFAME------EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGI 373
+ + +AP++ E Q+ E+G D + + E + +G+
Sbjct: 307 -----DSMTFNLNSAPVVLHQEFLGRDLWIKQIGEAQEKGRLDYAKLR---ERIKAGKGV 358
Query: 374 QKTRELAVKHANLAAAAIDSLP 395
+L H N A A++S P
Sbjct: 359 TSAIDLCRYHGNKALEALESFP 380
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 171/348 (49%), Gaps = 32/348 (9%)
Query: 77 IEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMAT 136
I+ + D + VA + + + + + + ++V + S +++ + G GKR RP + LL A
Sbjct: 3 IDFKQDILAPVAQDFAAMDQFINEGISSKVALVMSVSKHVVEAG--GKRMRPIMCLLAAY 60
Query: 137 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLN 196
A T L+ Q+ +A I EM+H A+L+HDDV+D++ RRG + N
Sbjct: 61 ACG---------------ETNLKHAQK-LAAIIEMLHTATLVHDDVVDESGLRRGRPTAN 104
Query: 197 FVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSM 256
N+ AVL GDFL++RA L L N ++ +T + GE +Q+ +
Sbjct: 105 ATWNNQTAVLVGDFLIARAFDLLVDLDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTE 164
Query: 257 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 316
D Y+Q + KT+ L + + A+LAG+ L + + G A+Q+IDD+LD+T +
Sbjct: 165 DIYLQIIHGKTSRLFELATEGAAILAGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDA 223
Query: 317 ASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSR 371
+LGK D+ G T P++ AM E+ +R + G +S ++ + + S
Sbjct: 224 DTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIRRSIATG--GTSQLEQVIAIVQNSG 281
Query: 372 GIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
+ + A + A A++ LPE + R+AL++LT + R
Sbjct: 282 ALDYCHKRATEETERALQALEILPE------STYRQALVNLTRLALDR 323
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 166/322 (51%), Gaps = 24/322 (7%)
Query: 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 145
L++DELS +A ++R +V + P L + A F + R V+LL++ A P
Sbjct: 73 LLSDELSNVAMQVRKLVGTQHP-LLTTARGFVHDSRHNLQLRGLVVLLISKAAG---PST 128
Query: 146 LHDGVEDA-LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKL 203
+ ++ + + + + Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+
Sbjct: 129 RNSSSQNYDMVSGIYSCQRNLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMKFGNKI 188
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-------DQRCSM 256
AVL+GDFLL+ AC LA L+NT+VV LLA+ + LV G + + S+ D R S
Sbjct: 189 AVLSGDFLLANACNGLALLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDDIRIST 248
Query: 257 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 316
+ ++T+ +L++ SCKA LA A V +AF YGK++ +++++ D+ F
Sbjct: 249 --WKEQTFLSHCALLAKSCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFIKDK 306
Query: 317 ASLGKGSLSDIRHGIITAPILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGI 373
AS K + +AP++ E + ++ + E + N E + +G+
Sbjct: 307 ASDSK------TFNLNSAPVVLHQEFLGRDLWIKQIGEAQEKGRLNYTKLRETIKAGKGV 360
Query: 374 QKTRELAVKHANLAAAAIDSLP 395
+L H N A A++S P
Sbjct: 361 TSAIDLCRYHGNKALEALESFP 382
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 164/320 (51%), Gaps = 20/320 (6%)
Query: 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 145
L++DELS +A ++R +V P L + A + R V+LL++ A P
Sbjct: 73 LLSDELSNIAMQVRKLVGTGHP-LLTTARALVHDSRHNLQLRGLVVLLISKAAG---PST 128
Query: 146 LHDGVEDA-LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKL 203
+ ++ + + + + Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+
Sbjct: 129 RNAACQNYDMVSGVYSCQRSLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMQFGNKI 188
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD-----Y 258
A+L+GDFLL+ AC LA L+NT+VV LL++ + LV G + + S+ + D
Sbjct: 189 AILSGDFLLANACNGLALLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDDIGIST 248
Query: 259 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 318
+ ++T+ +L++ SC+A LA A V +AF YGK++ +++++ D+ F AS
Sbjct: 249 WKEQTFLSHCALLAKSCQAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKAS 308
Query: 319 LGKGSLSDIRHGIITAPILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQK 375
K + +AP++ E + ++ + E + S N E + +G+
Sbjct: 309 DSK------TFNLNSAPVVLHQEFLGRDLWIKQIGEAQEKGSLNYSKLRETIKAGKGVTS 362
Query: 376 TRELAVKHANLAAAAIDSLP 395
+L H N A A++S P
Sbjct: 363 AIDLCRYHGNKALEALESFP 382
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 170/348 (48%), Gaps = 39/348 (11%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALN 139
L +S VAD KR+ + P L A+E+ G GK+ RP++ LL A+
Sbjct: 8 LRKYSEVAD------KRIMECISDITPDTLLKASEHLITAG--GKKIRPSLALLSCEAVG 59
Query: 140 VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM 199
P EDA +A E+IH SL+HDD++DD + RRG S++ +
Sbjct: 60 ---GNP-----EDAAG---------VAAAIELIHTFSLIHDDIMDDDEMRRGEPSVHVIW 102
Query: 200 GNKLAVLAGDFLLSRACVALASLKNTE-VVTLLATVVEHLVT---GETMQMTTSSDQRCS 255
G +A+LAGD L S+A A+ ++E V LA VV+ V G+ + M +
Sbjct: 103 GEPMAILAGDVLFSKAFEAVIRNGDSERVKDALAVVVDSCVKICEGQALDMGFEERLDVT 162
Query: 256 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 315
D YM+ Y KTA+LI+ + KA A++ G + DYGK +GLA+Q+ DD LD
Sbjct: 163 EDEYMEMIYKKTAALIAAATKAGAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSD 222
Query: 316 SASLGKGSLSDIRHGIITAPILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRG 372
SLGK SDI G +T ++ A+EE + R + G D +V A+E +
Sbjct: 223 EESLGKPVGSDIAEGKMTLMVVKALEEASEEDRERLISILGSGDEGSVAEAIEIFERYGA 282
Query: 373 IQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
Q E+A+ + +A ++ L +++ +R AL+ + V+ R
Sbjct: 283 TQYAHEVALDYVRMAKERLEILEDSD------ARDALMRIADFVLERE 324
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 175/349 (50%), Gaps = 41/349 (11%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALN 139
L +S +ADE R+R + P+ L A+E+ G GK+ RP++ LL + A+
Sbjct: 8 LRKYSEMADE------RIRESISDITPETLLRASEHLITAG--GKKIRPSLALLSSEAVG 59
Query: 140 VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM 199
+P DA +A E+IH SL+HDD++DD + RRG +++ +
Sbjct: 60 ---GDP-----GDAAG---------VAAAIELIHTFSLIHDDIMDDDEIRRGEPAVHVLW 102
Query: 200 GNKLAVLAGDFLLSRACVALASLKNTEVVT-LLATVVEHLVT---GETMQMTTSSDQRCS 255
G +A+LAGD L S+A A+ ++E+V LA VV+ V G+ + M +
Sbjct: 103 GEPMAILAGDVLFSKAFEAVIRNGDSEMVKEALAVVVDSCVKICEGQALDMGFEERLDVT 162
Query: 256 MDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTG 314
+ YM+ Y KTA+LI+ + KA A++ G + E+A L DYG+ +GLA+Q+ DD LD
Sbjct: 163 EEEYMEMIYKKTAALIAAATKAGAIMGGGSPQEIAALE-DYGRCIGLAFQIHDDYLDVVS 221
Query: 315 TSASLGKGSLSDIRHGIITAPILFAME---EFPQLRTVVEQGFEDSSNVDIALEYLGKSR 371
SLGK SDI G +T ++ A+E E + R + G D V A+E +
Sbjct: 222 DEESLGKPVGSDIAEGKMTLMVVKALERASEKDRERLISILGSGDEKLVAEAIEIFERYG 281
Query: 372 GIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
+ +A+ H +A ++ L E++ +R AL + V+ R
Sbjct: 282 ATEYAHAVALDHVRMAKERLEVLEESD------AREALAMIADFVLERE 324
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 169/353 (47%), Gaps = 37/353 (10%)
Query: 82 DPFSLVADEL-SILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 140
D SL +E+ + + R+++ V + L A+ + F G GKR RP VL+
Sbjct: 4 DDLSLYFNEIVNNVNFRIKNFVKSNFKTLEEASFHLFTAG--GKRLRPLVLV-------- 53
Query: 141 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 200
D + + R R A E++H +L+HDD++D+ RRG+ +++ G
Sbjct: 54 --------SSSDLIGGD-RERAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKWG 104
Query: 201 NKLAVLAGDFLLSRACVAL-ASLK----NT--EVVTLLATVVEHLVTGETMQMTTSSDQR 253
+A+LAGD+L ++A AL +LK NT + ++ T +E + G+ M M+ +
Sbjct: 105 EPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRLD 164
Query: 254 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 313
+ + Y+Q KTA L S S ++ +V +YG NLG+++Q++DD+L
Sbjct: 165 VTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGII 224
Query: 314 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT---VVEQGFEDSSNVDI--ALEYLG 368
G LGK SDIR G T ++ + E + V G +++ D+ A E +
Sbjct: 225 GDEKELGKPIYSDIREGKKTILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEIIR 284
Query: 369 KSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
K +Q +LA K+++LA + +P +N + +AL L I R K
Sbjct: 285 K-HSLQYAYDLAKKYSDLAIENLREIPVSN----KTAEKALKYLAQFTIQRRK 332
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 26/251 (10%)
Query: 98 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 157
++S + +VPKL A+ + F G GKR RP +L + + +
Sbjct: 19 IKSYISGDVPKLYEASYHLFTSG--GKRLRPLILTISSDLFGGQ---------------- 60
Query: 158 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-- 215
R R E++H +L+HDD++D + RRG+ +++ G LA+LAGD L ++A
Sbjct: 61 -RERAYYAGAAIEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQ 119
Query: 216 --CVALASLKNTEVVTLLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASL 270
AL L + ++ ++ G+ + M Y+ KTA+L
Sbjct: 120 LLTQALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAAL 179
Query: 271 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 330
S S AL+AG L D+G NLG+A+Q++DD+L T LGK SDIR G
Sbjct: 180 FSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREG 239
Query: 331 IITAPILFAME 341
T ++ +E
Sbjct: 240 KKTILVIKTLE 250
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 28/240 (11%)
Query: 108 KLASAAEYFFKMGVEGKRFRP--TVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 165
KL +A+++ G GKR RP TV+ M D +E+ L
Sbjct: 34 KLYNASKHLLFAG--GKRIRPYLTVVTYMLKK----------DDIEEVLPA--------- 72
Query: 166 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 225
A E+IH +L+HDD++D+ D RRG +++ V G +A+LAGD L ++A A++ +K+
Sbjct: 73 AAAVELIHNYTLIHDDIMDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDN 132
Query: 226 ----EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 281
EV+ +L+ + G+ M M + +M+ Y+ KT +L+ S A++
Sbjct: 133 KKAHEVLKILSKACVEVCEGQAMDMEFEN-YYPTMEEYLDMIRKKTGALLEASVGIGAVM 191
Query: 282 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 341
A E +Y K +GL +Q+ DDVLD G LGK SDIR G T ++ A++
Sbjct: 192 ADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALK 251
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 24/346 (6%)
Query: 85 SLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATAL-NVRV 142
S +A+ I+ + + + + P +L SA+ Y G GKR RPT+LLL A +L +V
Sbjct: 9 SAIAERREIVNEAVSEQLPVQKPERLYSASRYLLDAG--GKRLRPTILLLAAESLADV-- 64
Query: 143 PEPL---HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM 199
EPL + E+ ++ E+I +L+HDD++DD D RRG+ +++
Sbjct: 65 -EPLSADYRQFPSLPGDEVDVLSAAVS--IEVIQSFTLIHDDIMDDDDLRRGVPAVHREY 121
Query: 200 GNKLAVLAGDFLLSRAC-----VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC 254
+ A+LAGD L S+A + ++ E + LAT + G+ + + +
Sbjct: 122 DLETAILAGDTLYSKAFEYMLDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDV 181
Query: 255 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314
+ + Y++ +KTA L + + A+L G E YG ++G A+Q+ DD+LD T
Sbjct: 182 TTEEYLEMVEFKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTA 241
Query: 315 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 374
S LGK SD+ T L A ++ + +V D + ++ A++ L + I
Sbjct: 242 PSDELGKQRGSDLVENKRTVITLHARDQGIDVEGLVSDDPSD-AEIEAAVQTLEDAGSID 300
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
RE+A+ +D LPEN ++R+ L D+ ++ R+
Sbjct: 301 FAREMALDLVTSGKERLDVLPEN------EARQLLEDIADFLVERS 340
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 28/231 (12%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR RP + L + G D++A A EMIH SL+HDD+
Sbjct: 118 GKRVRPALCLAACELV----------GGNDSMAMP-------AACAVEMIHTMSLIHDDL 160
Query: 183 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-------CVALASLKNTEVVTLLAT 233
+D+ D RRG + + V G +AVLAGD LL+ A + ++S + V LA
Sbjct: 161 PCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAK 220
Query: 234 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL 291
+ E LV G+ + + + ++ +KTA L+ + A+L G T E
Sbjct: 221 AIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 280
Query: 292 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 342
Y +++GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 281 LRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 331
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 183 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 239
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 240 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 299
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 300 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338
GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 183 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 239
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 240 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 299
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 300 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338
GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 29/252 (11%)
Query: 117 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 176
+ + GKR RP +L +A+ E +E AL T A EMIH S
Sbjct: 43 YSLSAGGKRIRP--ILCLASC------ELAGGTMEMALPT---------ACALEMIHTMS 85
Query: 177 LLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATV 234
L+HDD+ +D+ RRG + + + G LA+LAGD LL+ A +A+ L+ V
Sbjct: 86 LIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKV 145
Query: 235 VEH---------LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 285
+ LV G+ + +++ +++ +KT +L+ + + ALLAG
Sbjct: 146 IAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAK 205
Query: 286 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FP 344
+ Y +N+GLA+Q+IDDVLD T LGK D++ T P + +EE
Sbjct: 206 EKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIK 265
Query: 345 QLRTVVEQGFED 356
Q +VE+ E+
Sbjct: 266 QAELLVEEAKEE 277
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 126/262 (48%), Gaps = 34/262 (12%)
Query: 96 KRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 154
K L S V P K+ A Y G GKR RP VL + A L G E++L
Sbjct: 85 KALDSAVPLREPLKIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESL 132
Query: 155 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLL 212
A R EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL
Sbjct: 133 AMPARC-------AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALL 185
Query: 213 SRACVALASLKNTEV--------VTLLATVV--EHLVTGETMQMTTSSD--QRCSMDYYM 260
S A LAS ++EV V LA + E LV G+ + +++ +++
Sbjct: 186 SFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLK 245
Query: 261 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320
+KTA+L+ S ++ G + E + + +GL +Q++DD+LD T +S LG
Sbjct: 246 FIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELG 305
Query: 321 KGSLSDIRHGIITAPILFAMEE 342
K + D+ +T P L +E+
Sbjct: 306 KTAGKDLIADKLTYPKLMGLEK 327
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 21/214 (9%)
Query: 99 RSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 158
S+ + E P L E+ G GKR RP +LLL++ + +
Sbjct: 28 ESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGS 68
Query: 159 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 218
+R A EM+H ASL+HDD+LD RR + S G A+L GD+L++++ +A
Sbjct: 69 YSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IA 127
Query: 219 LASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 278
S +V+ + GE + + + DY+ + Y KTASL + S
Sbjct: 128 FISPYGEKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIG 186
Query: 279 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 312
A G E+A +G LG AYQ++DD+L+F
Sbjct: 187 AYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 220
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 143/301 (47%), Gaps = 32/301 (10%)
Query: 108 KLASAAEYFFKMGVEGKRFRPTVLLLMATAL--NVRVPEPLHDGVEDALATELRTRQQCI 165
+L A+ Y G GKR RP VL+L A A+ N+R P A+A EL
Sbjct: 32 ELYKASRYLVDAG--GKRLRPAVLILAAEAVGSNLRSVLPA------AVAVEL------- 76
Query: 166 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 225
+H +L+HDD++D D RRG+ +++ G A+LAGD L S+A L+ ++N
Sbjct: 77 ------VHNFTLIHDDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVENE 130
Query: 226 EVVTL-----LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 280
V L L+ + G+ + M + ++ + Y++ KT+ L + + K AL
Sbjct: 131 PVRVLKCMDVLSKTCTEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGAL 190
Query: 281 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 340
L G + EVA +YG+ +G+ +Q+ DDVLD T LGK SD+ G T ++ A
Sbjct: 191 LGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAF 250
Query: 341 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL---PEN 397
E+ +L + +G + A+ L + + + LA+ + +D L PE
Sbjct: 251 EKGVKL-DIFGKGEATLEETEAAVRTLTECGSLDYVKNLAISYIEEGKEKLDVLRDCPEK 309
Query: 398 N 398
Sbjct: 310 T 310
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 35/278 (12%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALN 139
D S + + ++ K L S V P K+ A Y G GKR RP VL + A L
Sbjct: 74 FDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRP-VLCIAACELV 130
Query: 140 VRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNF 197
G E++ A A EMIH SL+HDD+ +D+ D RRG + +
Sbjct: 131 ---------GGEESTAMP-------AACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 174
Query: 198 VMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATV-----------VEHLVTGETMQM 246
V G +AVLAGD LLS A LAS +++VV+ + V E LV G+ + +
Sbjct: 175 VFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDI 234
Query: 247 TTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 304
++ +++ +KTA+L+ S A++ G + + + + +GL +Q
Sbjct: 235 SSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQ 294
Query: 305 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 342
++DD+LD T +S LGK + D+ +T P + +E+
Sbjct: 295 VVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEK 332
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 108 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 167
+L+ A+ + K G GKR RP + LL A L E R +A
Sbjct: 17 RLSGASLHLIKAG--GKRLRPLITLLTARMLG---------------GLEAEARAIPLAA 59
Query: 168 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-- 225
E H SL+HDD++D + RRG+ + + V G+ A+LAGD L + A +A +
Sbjct: 60 SIETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGM 119
Query: 226 ------EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 279
+L+ + G+ M + Y+ KT +LI + + A
Sbjct: 120 SHEQAYRAFKVLSEAAIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGA 179
Query: 280 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 339
+ AG +E+ + + G N G+A+Q+ DD+L G GK +D+R G T +++A
Sbjct: 180 VAAGAGSEIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYA 239
Query: 340 MEE 342
+++
Sbjct: 240 VKK 242
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 114/248 (45%), Gaps = 40/248 (16%)
Query: 92 SILAKRLRSMVVAEVPKLASAA-EYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGV 150
S L K L + E P L +AA Y G G R RPT+L+ +A A P V
Sbjct: 9 SALVKALSPEALGESPPLLAAALPYGVFPG--GARIRPTILVSVALACGDDCP-----AV 61
Query: 151 EDALATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAG 208
DA A L E++H ASL+HDD+ D+AD RRG SL+ LAVLAG
Sbjct: 62 TDAAAVAL-----------ELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAG 110
Query: 209 DFLLSRACVALA---------SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYY 259
D LL R LA +LK + L+ + G+ + S+ + + Y
Sbjct: 111 DSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWE----SESKVDLAAY 166
Query: 260 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319
Q KT +L + + A+ AG AE FD G +G A+Q+ DD+ D ++ ++
Sbjct: 167 HQA---KTGALFIAATQMGAIAAGYEAEP---WFDLGMRIGSAFQIADDLKDALMSAEAM 220
Query: 320 GKGSLSDI 327
GK + DI
Sbjct: 221 GKPAGQDI 228
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 32/255 (12%)
Query: 100 SMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159
+++V E + A Y G GKR RP +L L A L + E+A+A
Sbjct: 96 AIIVKEPHVIHEAMRYSLLAG--GKRVRP-MLCLAACEL-------VGGNQENAMAA--- 142
Query: 160 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-- 215
A EMIH SL+HDD+ +D+ D RRG + + + G +AVLAGD LL+ A
Sbjct: 143 ------ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFE 196
Query: 216 --CVALASLKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTA 268
+ A + + +V +A + E LV G+ + + + S++ +KTA
Sbjct: 197 HIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTA 256
Query: 269 SLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 327
+L+ +S A+L G T EV L + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 257 ALLESSVVLGAILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 315
Query: 328 RHGIITAPILFAMEE 342
T P L +E+
Sbjct: 316 VVDKTTYPKLLGLEK 330
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 11/185 (5%)
Query: 169 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLS-------RACVAL 219
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A +
Sbjct: 134 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGV 193
Query: 220 ASLKNTEVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKA 277
+S + VV LA + E LV G+ + + + +++ +KTA+L+ S
Sbjct: 194 SSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVL 253
Query: 278 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPIL 337
A++ G E + + +GL +Q++DD+LD T +S LGK + D+ +T P L
Sbjct: 254 GAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL 313
Query: 338 FAMEE 342
+++
Sbjct: 314 LGIDK 318
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 108 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 167
KL A Y + G GKR RP +LL AL G + A+ +A
Sbjct: 33 KLKKAMAYSLEAG--GKRIRPLLLLSTVRAL----------GKDPAVGLP-------VAC 73
Query: 168 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 225
EMIH SL+HDD+ +D+ D RRG + + V G +A+LAGD LL+ A + + +
Sbjct: 74 AIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDE 133
Query: 226 EV--------VTLLATVV--EHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNS 274
+ + LA E +V G+ M S Y+ + +KT ++ S
Sbjct: 134 RIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHR--HKTGKMLQYS 191
Query: 275 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 334
A AL+ G A ++ +LGLA+Q+ DD+LD G +GK SD + T
Sbjct: 192 VHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATY 251
Query: 335 PILFAM 340
P L ++
Sbjct: 252 PALLSL 257
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 29/232 (12%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR RP VL + A L G E+++A A EMIH SL+HDD+
Sbjct: 94 GKRVRP-VLCIAACELV---------GGEESVALP-------AACAVEMIHTMSLIHDDL 136
Query: 183 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVTLLATV 234
+D+ D RRG + + V G +AVLAGD L+S A A++ + + LA
Sbjct: 137 PCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTAVSPARVVRAIGELAKA 196
Query: 235 V--EHLVTGETMQMTTSS-DQR-CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI 290
+ + LV G+ + +T+ DQ ++ +KTA L+ + A++ G + E
Sbjct: 197 IGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEEVE 256
Query: 291 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 342
+ + +GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 257 KLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPKLMGLEK 308
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR RP +LLL A L V HDG+ D +A EM+H ASL+ DD+
Sbjct: 52 GKRIRPMLLLLTARDLGCAVS---HDGLLD------------LACAVEMVHAASLILDDM 96
Query: 183 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVTLLATV 234
+DDA RRG +++ G +A+LA LLS+A L L V+ L+
Sbjct: 97 PCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIADADGLTPLAKNRAVSELSNA 156
Query: 235 V--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILA 292
+ + LV G+ ++ R S + + ++KT++L S + +++A ++E
Sbjct: 157 IGMQGLVQGQFKDLSEGDKPR-SAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCL 215
Query: 293 FDYGKNLGLAYQLIDDVLD 311
+ +LG A+QL+DD+ D
Sbjct: 216 HRFSLDLGQAFQLLDDLTD 234
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Query: 170 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-- 225
EM+H +SL+ DD+ +D+ RRG + + V G +A+LA S+A +ALA K T
Sbjct: 120 EMLHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILA-----SQALIALAVQKTTSS 174
Query: 226 -----------EVVTLLATVVEHLVTGETMQMTTSS---DQRCSMDYYMQKTYYKTASLI 271
+ V + VE LV G+ + D +++ +KTA+L+
Sbjct: 175 TFADVPPERILKTVQEMVKAVEGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALL 234
Query: 272 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
+ A++ G + E Y + +GL +Q++DDVLD T +S LGK + D+ G
Sbjct: 235 EAAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGK 294
Query: 332 ITAPILFAMEE 342
+T P L +E+
Sbjct: 295 LTYPRLMGVEK 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,574,208
Number of Sequences: 539616
Number of extensions: 5611295
Number of successful extensions: 16279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 16039
Number of HSP's gapped (non-prelim): 119
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)