Query 014640
Match_columns 421
No_of_seqs 257 out of 1658
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 1.6E-72 5.4E-77 564.4 33.9 316 80-420 24-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 1.9E-71 6.3E-76 556.4 34.2 317 80-421 11-333 (341)
3 3apz_A Geranyl diphosphate syn 100.0 4.2E-72 1.4E-76 563.5 27.6 344 78-421 5-348 (348)
4 3rmg_A Octaprenyl-diphosphate 100.0 4.9E-71 1.7E-75 552.2 28.4 315 81-421 7-326 (334)
5 3pko_A Geranylgeranyl pyrophos 100.0 7.1E-71 2.4E-75 551.0 28.4 318 80-421 14-334 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 2.3E-70 7.8E-75 551.0 27.8 314 82-421 35-352 (360)
7 3nf2_A Putative polyprenyl syn 100.0 4.5E-70 1.6E-74 548.3 29.6 312 84-420 6-343 (352)
8 1wy0_A Geranylgeranyl pyrophos 100.0 5.1E-70 1.8E-74 547.1 27.7 316 81-421 5-342 (342)
9 3aqb_B Component B of hexapren 100.0 1.5E-69 5E-74 540.2 28.5 315 81-421 4-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 2.9E-68 1E-72 536.5 30.3 312 82-421 5-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.3E-67 4.6E-72 527.1 26.5 306 88-421 6-330 (330)
12 1v4e_A Octoprenyl-diphosphate 100.0 1.7E-66 5.7E-71 512.2 24.4 282 86-398 8-289 (299)
13 3lk5_A Geranylgeranyl pyrophos 100.0 1.5E-65 5.2E-70 519.9 27.7 321 81-420 19-372 (380)
14 3tc1_A Octaprenyl pyrophosphat 100.0 2.2E-65 7.6E-70 507.1 26.5 299 90-417 5-307 (315)
15 2e8v_A Geranylgeranyl pyrophos 100.0 7.7E-66 2.6E-70 516.1 21.2 304 94-418 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 1.3E-65 4.5E-70 506.3 20.4 292 98-421 2-297 (301)
17 3uca_A Geranyltranstransferase 100.0 5.8E-64 2E-68 497.7 26.4 284 78-421 28-324 (324)
18 1yhl_A Farnesyl pyrophosphate 100.0 5E-63 1.7E-67 500.0 29.2 299 107-421 34-362 (362)
19 4f62_A Geranyltranstransferase 100.0 7.8E-63 2.7E-67 488.2 29.0 279 82-421 4-295 (317)
20 3ts7_A Geranyltranstransferase 100.0 4.7E-63 1.6E-67 491.1 27.3 279 82-421 8-302 (324)
21 2qis_A Farnesyl pyrophosphate 100.0 9.4E-63 3.2E-67 499.2 29.6 295 107-421 64-374 (374)
22 1rtr_A Geranyltranstransferase 100.0 2.5E-63 8.4E-68 490.0 23.5 273 90-421 9-293 (301)
23 2h8o_A Geranyltranstransferase 100.0 5.1E-63 1.7E-67 493.5 24.9 277 84-421 40-335 (335)
24 1rqj_A Geranyltranstransferase 100.0 3E-63 1E-67 489.2 22.8 280 84-421 4-299 (299)
25 3lsn_A Geranyltranstransferase 100.0 1.5E-62 5.1E-67 484.4 27.1 277 84-421 4-296 (304)
26 3p8l_A Geranyltranstransferase 100.0 1.7E-62 5.9E-67 483.3 26.2 275 87-419 14-302 (302)
27 3p8r_A Geranyltranstransferase 100.0 1.4E-62 4.7E-67 484.5 25.5 277 84-421 10-302 (302)
28 1uby_A FPS, farnesyl diphospha 100.0 3.4E-62 1.2E-66 494.0 28.4 295 107-421 57-367 (367)
29 3dyh_A Farnesyl pyrophosphate 100.0 2.4E-62 8.1E-67 498.3 24.1 323 85-421 27-390 (390)
30 2ihi_A Pyrophosphate synthase; 100.0 4.1E-62 1.4E-66 496.8 25.8 293 107-420 66-395 (395)
31 3m0g_A Farnesyl diphosphate sy 100.0 7.8E-62 2.7E-66 477.9 23.3 274 84-421 4-289 (297)
32 3lom_A Geranyltranstransferase 100.0 1.5E-61 5E-66 478.9 24.5 276 84-420 10-302 (313)
33 3mav_A Farnesyl pyrophosphate 100.0 3.5E-61 1.2E-65 491.5 27.6 290 109-419 68-394 (395)
34 3pde_A Farnesyl-diphosphate sy 100.0 1.5E-61 5E-66 477.6 23.9 279 84-421 9-300 (309)
35 3ipi_A Geranyltranstransferase 100.0 1.7E-61 5.6E-66 475.1 23.9 272 91-420 11-283 (295)
36 2ftz_A Geranyltranstransferase 100.0 4.7E-61 1.6E-65 469.6 25.1 266 90-419 14-284 (284)
37 2her_A Fragment, farnesyl pyro 100.0 5.2E-62 1.8E-66 490.9 18.0 284 107-419 58-354 (368)
38 3llw_A Geranyltranstransferase 100.0 2.6E-58 8.8E-63 455.3 25.3 273 94-420 18-304 (311)
39 2j1p_A Geranylgeranyl pyrophos 100.0 3E-57 1E-61 445.1 25.7 269 80-421 10-293 (293)
40 2azj_A Geranylgeranyl pyrophos 100.0 1.4E-57 4.6E-62 446.3 23.0 264 86-420 14-280 (289)
41 3npk_A Geranyltranstransferase 100.0 1.6E-57 5.4E-62 445.9 23.1 266 92-418 7-284 (291)
42 2q58_A Fragment, farnesyl pyro 100.0 9.7E-58 3.3E-62 461.8 19.1 283 109-420 60-359 (368)
43 4fp4_A Polyprenyl synthetase; 100.0 3.5E-53 1.2E-57 412.7 15.0 223 80-330 3-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 1.7E-48 5.9E-53 379.3 24.5 203 87-309 5-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 4.3E-47 1.5E-51 369.4 25.2 202 86-310 9-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.7 0.098 3.4E-06 50.5 18.2 132 235-397 106-237 (294)
47 3acx_A Dehydrosqualene synthas 95.1 0.21 7.1E-06 48.0 12.6 135 234-398 109-243 (293)
48 3vj8_A Squalene synthase; farn 94.5 0.39 1.3E-05 47.4 13.0 145 227-397 112-256 (343)
49 3aqb_A Component A of hexapren 78.9 2.9 9.9E-05 35.6 5.3 45 204-248 72-116 (147)
50 3kb9_A EPI-isozizaene synthase 77.0 58 0.002 31.9 15.9 92 223-315 174-269 (382)
51 3v1v_A 2-MIB synthase, 2-methy 74.5 33 0.0011 34.6 12.8 97 217-315 246-346 (433)
52 1ps1_A Pentalenene synthase; a 61.1 1.1E+02 0.0038 28.8 15.1 98 218-315 126-227 (337)
53 3g4d_A (+)-delta-cadinene synt 56.5 1.3E+02 0.0043 31.4 13.2 88 225-315 365-459 (554)
54 3n0f_A Isoprene synthase; terp 49.6 1.2E+02 0.0041 31.6 11.7 87 227-315 365-457 (555)
55 2q80_A Geranylgeranyl pyrophos 49.5 1.4E+02 0.005 28.1 11.5 45 282-338 40-84 (301)
56 3m00_A Aristolochene synthase; 46.5 1.6E+02 0.0056 30.5 12.1 88 225-315 361-454 (550)
57 3rmg_A Octaprenyl-diphosphate 45.0 96 0.0033 29.9 9.6 45 283-339 63-107 (334)
58 3mzv_A Decaprenyl diphosphate 44.5 1.4E+02 0.0046 29.0 10.6 52 275-338 61-112 (341)
59 1di1_A Aristolochene synthase; 42.8 2E+02 0.0069 26.3 17.2 64 252-315 150-213 (300)
60 3lsn_A Geranyltranstransferase 42.5 30 0.001 33.2 5.4 81 162-242 205-299 (304)
61 4fp4_A Polyprenyl synthetase; 41.6 1.1E+02 0.0038 28.9 9.2 42 285-338 66-107 (285)
62 3uca_A Geranyltranstransferase 41.5 46 0.0016 32.2 6.6 62 162-223 233-306 (324)
63 3nf2_A Putative polyprenyl syn 39.0 96 0.0033 30.2 8.6 51 276-338 63-113 (352)
64 4f62_A Geranyltranstransferase 38.7 55 0.0019 31.5 6.6 62 162-223 204-277 (317)
65 3bny_A Aristolochene synthase; 38.6 2.4E+02 0.0083 26.1 13.7 64 252-315 164-227 (320)
66 3m0g_A Farnesyl diphosphate sy 36.9 94 0.0032 29.5 7.9 60 164-223 200-271 (297)
67 2ftz_A Geranyltranstransferase 36.2 2.2E+02 0.0076 26.7 10.4 45 282-338 61-107 (284)
68 3lmd_A Geranylgeranyl pyrophos 34.7 1.1E+02 0.0036 30.0 8.1 50 277-338 84-134 (360)
69 3ts7_A Geranyltranstransferase 32.7 82 0.0028 30.4 6.8 63 162-224 211-285 (324)
70 3p8l_A Geranyltranstransferase 32.3 56 0.0019 31.2 5.5 61 162-222 208-280 (302)
71 2ong_A 4S-limonene synthase; m 31.5 4.4E+02 0.015 27.0 13.4 88 227-315 356-448 (543)
72 3aqb_B Component B of hexapren 31.2 1.4E+02 0.0047 28.6 8.1 50 277-338 54-103 (325)
73 1rtr_A Geranyltranstransferase 30.9 52 0.0018 31.3 5.0 62 162-223 200-273 (301)
74 3lom_A Geranyltranstransferase 30.2 64 0.0022 31.0 5.5 72 162-233 212-296 (313)
75 1v4e_A Octoprenyl-diphosphate 29.6 1.7E+02 0.0059 27.6 8.4 40 287-338 61-100 (299)
76 2h8o_A Geranyltranstransferase 29.1 64 0.0022 31.3 5.4 62 162-223 244-317 (335)
77 3p8r_A Geranyltranstransferase 28.1 74 0.0025 30.3 5.5 62 163-224 212-285 (302)
78 3pko_A Geranylgeranyl pyrophos 27.6 1.9E+02 0.0066 27.7 8.5 47 280-338 68-115 (334)
79 1n1b_A (+)-bornyl diphosphate 26.5 1.9E+02 0.0064 30.0 8.7 88 227-315 362-455 (549)
80 4dhd_A Polyprenyl synthetase; 25.2 2.1E+02 0.0072 27.7 8.4 42 285-338 63-104 (358)
81 3sdr_A Alpha-bisabolene syntha 25.0 1.8E+02 0.006 31.8 8.4 87 227-315 626-721 (817)
82 2e8v_A Geranylgeranyl pyrophos 24.2 3.7E+02 0.013 25.7 9.9 46 281-338 54-99 (340)
83 3p5p_A Taxadiene synthase; cla 23.4 2.4E+02 0.0082 30.5 9.0 87 227-315 567-659 (764)
84 3oyr_A Trans-isoprenyl diphosp 21.2 2E+02 0.0068 27.8 7.2 37 275-311 73-109 (345)
85 1wy0_A Geranylgeranyl pyrophos 20.7 2.5E+02 0.0086 26.9 7.9 47 281-339 60-106 (342)
86 3pde_A Farnesyl-diphosphate sy 20.0 1.4E+02 0.0048 28.5 5.8 60 163-222 208-279 (309)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.6e-72 Score=564.45 Aligned_cols=316 Identities=31% Similarity=0.434 Sum_probs=267.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
..+....+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||+|++++++++|++.+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~---------------- 85 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND---------------- 85 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 45567889999999999999999999999999999999988 999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014640 160 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 239 (421)
Q Consensus 160 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~ 239 (421)
.++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..++
T Consensus 86 -~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 164 (345)
T 3oyr_A 86 -HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIA 164 (345)
T ss_dssp -THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014640 240 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319 (421)
Q Consensus 240 ~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~ 319 (421)
+||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++.+
T Consensus 165 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~ 244 (345)
T 3oyr_A 165 EGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETL 244 (345)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999987778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCcccHHHHHHHhhC-chHHHHHHc----ccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014640 320 GKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQ----GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394 (421)
Q Consensus 320 GK~~g~Dl~~Gk~TlPvl~Ale~~-~~l~~~l~~----~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 394 (421)
|||.|+||++||+|+|++++++.. ++.++.+.+ ...++++++++++++.++|++++|++++++|.++|++.|+.|
T Consensus 245 GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~l 324 (345)
T 3oyr_A 245 GKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMF 324 (345)
T ss_dssp ------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 444444433 334567899999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhcc
Q 014640 395 PENNDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 395 p~~~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
|+++ +|+.|.+|++++++|+
T Consensus 325 p~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 325 PAND------WREALEELADFAVSRR 344 (345)
T ss_dssp CSSH------HHHHHHHHHHHHHHC-
T ss_pred CCcH------HHHHHHHHHHHHHhcc
Confidence 9998 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.9e-71 Score=556.42 Aligned_cols=317 Identities=29% Similarity=0.497 Sum_probs=281.5
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 158 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+.+.+..+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||+|++++++++|++..
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 73 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP--------------- 73 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 45567889999999999999999988 899999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014640 159 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 238 (421)
Q Consensus 159 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l 238 (421)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++..++++++.+++++..+
T Consensus 74 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 151 (341)
T 3mzv_A 74 --FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVI 151 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 014640 239 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 318 (421)
Q Consensus 239 ~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~ 318 (421)
++||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++.
T Consensus 152 ~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~ 231 (341)
T 3mzv_A 152 AEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAE 231 (341)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999998777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCcccHHHHHHHhhCch-----HHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014640 319 LGKGSLSDIRHGIITAPILFAMEEFPQ-----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393 (421)
Q Consensus 319 ~GK~~g~Dl~~Gk~TlPvl~Ale~~~~-----l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 393 (421)
+|||.|+||++||+|+|+++|++..+. +.+++.+...++++++++++++.++|++++|++++++|.++|.+.|+.
T Consensus 232 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~ 311 (341)
T 3mzv_A 232 IGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAK 311 (341)
T ss_dssp ----CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998642 334444444467899999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 394 LPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 394 lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
||+++ +|+.|.+|++++++|+.
T Consensus 312 lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 312 LPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp SCCCH------HHHHHHHHHHHHTGGGC
T ss_pred CCCCH------HHHHHHHHHHHHHhccc
Confidence 99998 99999999999999964
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=4.2e-72 Score=563.48 Aligned_cols=344 Identities=80% Similarity=1.158 Sum_probs=276.9
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014640 78 EEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 157 (421)
Q Consensus 78 ~~~~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~ 157 (421)
....+++..+.+|++.|+++|++.+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+.+.+..+..+.+
T Consensus 5 ~~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (348)
T 3apz_A 5 EEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSE 84 (348)
T ss_dssp ---CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccc
Confidence 34566788899999999999999999999999999999998544599999999999999998643211000000001123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014640 158 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEH 237 (421)
Q Consensus 158 ~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~ 237 (421)
..++++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..
T Consensus 85 ~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 164 (348)
T 3apz_A 85 LRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEH 164 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014640 238 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 317 (421)
Q Consensus 238 l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~ 317 (421)
+++||++|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++||+++++
T Consensus 165 ~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~ 244 (348)
T 3apz_A 165 LVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244 (348)
T ss_dssp HHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh
Confidence 99999999988765568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014640 318 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 397 (421)
Q Consensus 318 ~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 397 (421)
.+|||.|+||++||+|+|+++|++..+++++++.+.+.++++++++++++.++|++++|++++++|.++|.+.|+.||.+
T Consensus 245 ~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~ 324 (348)
T 3apz_A 245 SLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPET 324 (348)
T ss_dssp CTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred hcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999998999999988888888999999999999999999999999999999999999987
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014640 398 NDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 398 ~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+.......++.|..|++++++|++
T Consensus 325 ~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 325 DNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccHHHHHHHHHHHHHHHhCcC
Confidence 521112268999999999999975
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-71 Score=552.18 Aligned_cols=315 Identities=28% Similarity=0.382 Sum_probs=272.4
Q ss_pred cCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 81 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 81 ~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
.+.+..+++||+.|+..|++.+.+.+|.+.++.+|++..| |||+||+|++++++++|++. +
T Consensus 7 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 67 (334)
T 3rmg_A 7 SLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------P 67 (334)
T ss_dssp HHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 3456789999999999999999999999999999999878 99999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 240 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 240 (421)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++...++++++.+++++..+++
T Consensus 68 ~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 147 (334)
T 3rmg_A 68 ATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAE 147 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccC
Q 014640 241 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320 (421)
Q Consensus 241 Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~G 320 (421)
||++|+.+..+...++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++ +++.+|
T Consensus 148 GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~G 226 (334)
T 3rmg_A 148 GELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIG 226 (334)
T ss_dssp HHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC----
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcC
Confidence 9999999987777899999999999999999999999999999999999999999999999999999999999 578999
Q ss_pred CCcccccccCcccHHHHHHHhhC-c----hHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014640 321 KGSLSDIRHGIITAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 395 (421)
Q Consensus 321 K~~g~Dl~~Gk~TlPvl~Ale~~-~----~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 395 (421)
||.|+||++||+|+|+++|++.. + .+.+++.+...++++++++++++.++|++++|+.++++|.++|.+.|+.||
T Consensus 227 K~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp 306 (334)
T 3rmg_A 227 KPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALP 306 (334)
T ss_dssp --CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999874 2 456667666678899999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 396 ENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 396 ~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+++ +|+.|..|++++++|.+
T Consensus 307 ~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 307 DSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCH------HHHHHHHHHHHHHHCC-
T ss_pred CcH------HHHHHHHHHHHHHhccc
Confidence 988 99999999999999974
No 5
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=7.1e-71 Score=551.00 Aligned_cols=318 Identities=26% Similarity=0.430 Sum_probs=297.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
.+++|+.+.+|++.|+..|++.+.+.+|.+.++++|++..| |||+||.|++++++ +|+..+ .
T Consensus 14 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~ 75 (334)
T 3pko_A 14 LWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------P 75 (334)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------H
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------H
Confidence 57788999999999999999999999999999999999988 99999999999999 664111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Q 014640 160 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHL 238 (421)
Q Consensus 160 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-~~v~~~ls~~~~~l 238 (421)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..+ +++++.+++++..+
T Consensus 76 ~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 155 (334)
T 3pko_A 76 AQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRI 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999998765 89999999999999
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 014640 239 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 318 (421)
Q Consensus 239 ~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~ 318 (421)
++||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 156 ~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~ 235 (334)
T 3pko_A 156 LQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKR 235 (334)
T ss_dssp HHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999988777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCcccHHHHHHHhhCc-hHHHHHH-cccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014640 319 LGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 396 (421)
Q Consensus 319 ~GK~~g~Dl~~Gk~TlPvl~Ale~~~-~l~~~l~-~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~ 396 (421)
+|||.|+||++||+|+|+++|++..+ ++++++. +...++++++++++++.++|++++|++++++|.++|.+.|+.||+
T Consensus 236 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~ 315 (334)
T 3pko_A 236 TQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPV 315 (334)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred cCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999875 6777773 344577899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014640 397 NNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 397 ~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++ +++.|.+|++++++|++
T Consensus 316 ~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 316 GS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp SH------HHHHHHHHHHHHTTCC-
T ss_pred cH------HHHHHHHHHHHHHhccC
Confidence 88 99999999999999974
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.3e-70 Score=551.01 Aligned_cols=314 Identities=29% Similarity=0.431 Sum_probs=274.2
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014640 82 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 161 (421)
Q Consensus 82 d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
+....+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||+|+++++++++.... +.
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~ 96 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------EN 96 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HH
Confidence 346789999999999999999999999999999999988 999999999999998872221 36
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014640 162 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 241 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~G 241 (421)
++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++++ +++++.+++++..+++|
T Consensus 97 ~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~G 175 (360)
T 3lmd_A 97 VIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTG 175 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876 58999999999999999
Q ss_pred HHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCC
Q 014640 242 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 321 (421)
Q Consensus 242 q~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK 321 (421)
|++|+.+..+. .++++|++|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++|++++++.+||
T Consensus 176 Q~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK 254 (360)
T 3lmd_A 176 QMRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGK 254 (360)
T ss_dssp HHHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCC
Confidence 99999998776 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCcccHHHHHHHhhCc----hHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014640 322 GSLSDIRHGIITAPILFAMEEFP----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 397 (421)
Q Consensus 322 ~~g~Dl~~Gk~TlPvl~Ale~~~----~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 397 (421)
|.|+||++||+|+|+++|++..+ ++.+++.+...+++++++++++|.++|++++|++++++|.++|.+.|+.||++
T Consensus 255 ~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 255 TPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp -CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998743 45666666666778999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014640 398 NDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 398 ~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+ +|+.|.+|++++++|+.
T Consensus 335 ~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 335 T------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp H------HHHHHHHHHHHHHHTTS
T ss_pred H------HHHHHHHHHHHHHHhcc
Confidence 8 99999999999999963
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=4.5e-70 Score=548.26 Aligned_cols=312 Identities=25% Similarity=0.342 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHH-----------hCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchh
Q 014640 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 152 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~-----------~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~ 152 (421)
...++.-.+.|+..|++.+.+.+|.+.+++.|.+ ..| |||+||+|++++++++|++..
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~~--------- 74 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAPE--------- 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCHH---------
Confidence 4567778888999999999999999999999998 456 999999999999999987432
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCH---HHHH
Q 014640 153 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVT 229 (421)
Q Consensus 153 ~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~---~v~~ 229 (421)
.++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++.+++ ++++
T Consensus 75 --------~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~ 146 (352)
T 3nf2_A 75 --------VGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATR 146 (352)
T ss_dssp --------GGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999876 7899
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcc
Q 014640 230 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 309 (421)
Q Consensus 230 ~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDl 309 (421)
++++++..+++||++|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.++.||+++|+||||+||+
T Consensus 147 ~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 147 RLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcccccccCcccHHHHHHHhhC-c---hHHHHHHcc-------cCCchHHHHHHHHHHhcchHHHHHH
Q 014640 310 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRE 378 (421)
Q Consensus 310 lD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~-~---~l~~~l~~~-------~~~~~~~~~i~~li~~sg~i~~a~~ 378 (421)
+||+++++.+|||.|+||++||+|+|+++|++.. | ++.+++.+. ..+++++++++++|.++|++++|++
T Consensus 227 ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~ 306 (352)
T 3nf2_A 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352)
T ss_dssp HHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999974 3 455666543 2466889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhcc
Q 014640 379 LAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 379 ~a~~~~~~A~~~L~~lp~-~~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
++++|.++|.+.|+.||+ ++ +|+.|..|++++++|.
T Consensus 307 ~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 307 EARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRK 343 (352)
T ss_dssp HHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhcc
Confidence 999999999999999998 55 9999999999999996
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.1e-70 Score=547.14 Aligned_cols=316 Identities=28% Similarity=0.387 Sum_probs=292.0
Q ss_pred cCchHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014640 81 LDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159 (421)
Q Consensus 81 ~d~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
.+.+..+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|++.
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~----------------- 65 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP----------------- 65 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------
Confidence 3456778899999999999999887 889999999999988 99999999999999987642
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHH
Q 014640 160 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATV 234 (421)
Q Consensus 160 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~ 234 (421)
+.++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++. .+.++++.++++
T Consensus 66 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (342)
T 1wy0_A 66 LRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKA 145 (342)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHH
Confidence 146789999999999999999999999999999999999999999999999999999999997 557899999999
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 014640 235 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314 (421)
Q Consensus 235 ~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~ 314 (421)
+..+++||.+|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++
T Consensus 146 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 146 SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccccccCcccHHHHHHHhhCc-hHHHHHHcccCC---------------chHHHHHHHHHHhcchHHHHHH
Q 014640 315 TSASLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFED---------------SSNVDIALEYLGKSRGIQKTRE 378 (421)
Q Consensus 315 ~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~-~l~~~l~~~~~~---------------~~~~~~i~~li~~sg~i~~a~~ 378 (421)
+++.+|||.|+||++||+|+|++++++..+ +.++.+.+.+.. +++++++++++.++|++++|++
T Consensus 226 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~ 305 (342)
T 1wy0_A 226 DEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAE 305 (342)
T ss_dssp CHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 999999999999999999999999998754 455566555432 5689999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 379 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 379 ~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++++|.++|.+.|+.||+++ .++.|..+++++++|++
T Consensus 306 ~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 306 IAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 99999999999999999887 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.5e-69 Score=540.22 Aligned_cols=315 Identities=28% Similarity=0.415 Sum_probs=291.0
Q ss_pred cCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 81 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 81 ~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
...+..+.+|++.|++.|++.+.+.+|.+.++.+|++..| |||+||.+++++++++|++. +
T Consensus 4 l~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~ 64 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------D 64 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------H
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 4456778999999999999999888999999999999988 99999999999999997642 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 240 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 240 (421)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++++++.+++++..+++
T Consensus 65 ~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (325)
T 3aqb_B 65 DLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCF 144 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccC
Q 014640 241 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320 (421)
Q Consensus 241 Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~G 320 (421)
||.+|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 145 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 224 (325)
T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999998877779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCcccHHHHHHHhhCch-HHHHHH---cccC---CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014640 321 KGSLSDIRHGIITAPILFAMEEFPQ-LRTVVE---QGFE---DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393 (421)
Q Consensus 321 K~~g~Dl~~Gk~TlPvl~Ale~~~~-l~~~l~---~~~~---~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 393 (421)
||.|+||++||+|+|++++++..+. .++.+. +.+. .+++++++++++.++ ++++|+..+++|.++|.+.|+.
T Consensus 225 K~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~ 303 (325)
T 3aqb_B 225 KPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQ 303 (325)
T ss_dssp SCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHT
T ss_pred CccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987532 222332 2222 267899999999999 9999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 394 LPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 394 lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
||+++ .|+.|..+++++++|++
T Consensus 304 lp~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 304 LQDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp SCCCH------HHHHHHHHHHHHTTTTC
T ss_pred CCCcH------HHHHHHHHHHHHHhCcC
Confidence 99988 99999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.9e-68 Score=536.47 Aligned_cols=312 Identities=25% Similarity=0.343 Sum_probs=279.4
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 82 DPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 82 d~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
....+++..++.|++.|++.+... +|.+.++++|++..| |||+||+|++++++++|++..
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 65 (358)
T 4dhd_A 5 VVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR----------------- 65 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------
Confidence 334566778889999999999887 789999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLV 239 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-~~v~~~ls~~~~~l~ 239 (421)
.++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..++.... .++++.+++++..++
T Consensus 66 ~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (358)
T 4dhd_A 66 PALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAID 145 (358)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999976554 689999999999999
Q ss_pred HHHHHhcccc-----------CCC-CCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhh
Q 014640 240 TGETMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLID 307 (421)
Q Consensus 240 ~Gq~~dl~~~-----------~~~-~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~D 307 (421)
+||.+|+.+. .+. ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+|
T Consensus 146 ~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~D 225 (358)
T 4dhd_A 146 EGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIID 225 (358)
T ss_dssp HHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 444 6799999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCcccccccCcc-cHHHHHHHhhC-c----hHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHH
Q 014640 308 DVLDFTGTSASLGKGSLSDIRHGII-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAV 381 (421)
Q Consensus 308 DllD~~~~~~~~GK~~g~Dl~~Gk~-TlPvl~Ale~~-~----~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~ 381 (421)
|++|++++++.+|||.|+||++||+ |+|+++|++.. + .+.+++.+...+++++++++++|.++|++++|+++++
T Consensus 226 D~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~ 305 (358)
T 4dhd_A 226 DVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAA 305 (358)
T ss_dssp HHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999 99999999974 3 3566666666678899999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 382 KHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 382 ~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+|.++|++.|+.||+++ .|.+|++++++|++
T Consensus 306 ~~~~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 306 RYREEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 99999999999999543 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-67 Score=527.11 Aligned_cols=306 Identities=25% Similarity=0.261 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014640 88 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 167 (421)
Q Consensus 88 ~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 167 (421)
+...+.|++.|.+.+.+.+|.+.++++|++..| |||+||.|++++++++|++. +.++.+|+
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~ 66 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAAT 66 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 455667888898888888899999999999988 99999999999999998631 26789999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHHH
Q 014640 168 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGE 242 (421)
Q Consensus 168 avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-----~~v~~~ls~~~~~l~~Gq 242 (421)
++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+ +++++.+++++..+++||
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 146 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQ 146 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987543 789999999999999999
Q ss_pred HHhccc-cCC-CCCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014640 243 TMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319 (421)
Q Consensus 243 ~~dl~~-~~~-~~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~ 319 (421)
.+|+.+ ..+ ...++++|++|+++|||+| |++||++|++++|++++.. +++||.++|+||||+||++|++++++ +
T Consensus 147 ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~ 223 (330)
T 1wmw_A 147 HLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-Y 223 (330)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-C
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-c
Confidence 999998 766 5789999999999999999 9999999999999988766 99999999999999999999999999 9
Q ss_pred CCCcccccccCcccHHHHHHHhhCc-hHHHHHHcccC----C--chHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014640 320 GKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE----D--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 392 (421)
Q Consensus 320 GK~~g~Dl~~Gk~TlPvl~Ale~~~-~l~~~l~~~~~----~--~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 392 (421)
|||.|+||++||+|+|+++|++..+ +.++.+.+.+. + +++++++++++.++|++++|++++++|.++|.+.|+
T Consensus 224 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~ 303 (330)
T 1wmw_A 224 GKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLE 303 (330)
T ss_dssp SSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865 34444443332 2 678999999999999999999999999999999999
Q ss_pred ----cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 393 ----SLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 393 ----~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
.||+++ .++.|..|++++++|++
T Consensus 304 ~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 304 AAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp TGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 999877 89999999999999975
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.7e-66 Score=512.16 Aligned_cols=282 Identities=24% Similarity=0.381 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHH
Q 014640 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 165 (421)
Q Consensus 86 ~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (421)
.+.+|++.|++.|++.+.+.+| ++++|++..| |||+||.|++++++++|++.+ +.+..+
T Consensus 8 ~~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~ 66 (299)
T 1v4e_A 8 QNSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISS 66 (299)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHH
Confidence 3678899999999998877666 8999999878 999999999999999986211 267899
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q 014640 166 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 245 (421)
Q Consensus 166 A~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~d 245 (421)
|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..+++||.+|
T Consensus 67 A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 146 (299)
T 1v4e_A 67 LAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIE 146 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCccc
Q 014640 246 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 325 (421)
Q Consensus 246 l~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~ 325 (421)
+.+..+. .++++|++++.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+
T Consensus 147 l~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~ 221 (299)
T 1v4e_A 147 QLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFL 221 (299)
T ss_dssp HHHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSC
T ss_pred HHccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcch
Confidence 9987766 899999999999999999999999999999987 78999999999999999999999999 999999999
Q ss_pred ccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014640 326 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 398 (421)
Q Consensus 326 Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 398 (421)
||++||+|+|++++++..+.+++++.+ ++++++++++.++|++++|++++++|.++|.+.|+.||+..
T Consensus 222 Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 222 DLKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp CCTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HhhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999987666666654 57899999999999999999999999999999999999887
No 13
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.5e-65 Score=519.92 Aligned_cols=321 Identities=23% Similarity=0.286 Sum_probs=265.3
Q ss_pred cCchHHHHHHHHHHHHHHHHhhhcCchH---HHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014640 81 LDPFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 157 (421)
Q Consensus 81 ~d~~~~i~~el~~v~~~l~~~~~~~~p~---l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~ 157 (421)
.+....|+++|+.+-......+.+..|. +.+.+.|++..| |||+||+|++++++++|+..+.. .
T Consensus 19 ~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~ 85 (380)
T 3lk5_A 19 DKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------E 85 (380)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------S
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------C
Confidence 4445667888887776666655555554 566667888878 99999999999999998741100 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhc----------------cChHHHHHHHHHHHHHHHHHHHc
Q 014640 158 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALAS 221 (421)
Q Consensus 158 ~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~----------------~G~~~Avl~GD~Lla~A~~~la~ 221 (421)
..+.++++|+++||||+||||||||||+|++|||+||+|.+ ||++.|||+||||+++|+.++++
T Consensus 86 ~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~ 165 (380)
T 3lk5_A 86 KLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQD 165 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12478899999999999999999999999999999999997 69999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014640 222 LKN-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDY 295 (421)
Q Consensus 222 ~~~-----~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~ 295 (421)
... ..+++.++.+...+++||++|+.+..+...++++|++|+.+|||+| |++||++|++++|++++..+.++.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~ 245 (380)
T 3lk5_A 166 SGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHY 245 (380)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 653 3567888888899999999999988777789999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHHHHhhC----chHHHHHHccc---CCchHHHHHHHHHH
Q 014640 296 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGF---EDSSNVDIALEYLG 368 (421)
Q Consensus 296 G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~----~~l~~~l~~~~---~~~~~~~~i~~li~ 368 (421)
|++||+||||+||++|++++++.+|||.|+||++||+|+|+++|++.. |+.++.+.+.+ .+++++++++++|.
T Consensus 246 G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~ 325 (380)
T 3lk5_A 246 GHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIR 325 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864 44444444333 35678999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhccCCCC-CCcchHHHHHHHHHHHHHHHhcc
Q 014640 369 KSRGIQKTRELAVKHANLAAAAIDSLPEN-NDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 369 ~sg~i~~a~~~a~~~~~~A~~~L~~lp~~-~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
++|+++++++++++|.++|++.|+.+|.+ + +|+.|.+|++++..|.
T Consensus 326 ~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~------~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 326 ATGAEEEVEQRISQLTESGLAHLDDVDIPDE------VRAQLRALAIRSTERR 372 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH------HHHHHHHHHHHHHC--
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999964 5 9999999999999885
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.2e-65 Score=507.11 Aligned_cols=299 Identities=27% Similarity=0.348 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHhhhc-CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHH
Q 014640 90 ELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 168 (421)
Q Consensus 90 el~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 168 (421)
-++.|++.|.+.+.. ..|.+.+ .|.+..| |||+||.|++++++.. .. ....+++..+|++
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~~-~~--------------~~~~~~~~~~A~a 65 (315)
T 3tc1_A 5 QLKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNEK-TD--------------AILLDKALNLCTI 65 (315)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCTT-CC--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhccC-cc--------------ccchhhHHHHHHH
Confidence 356677777777753 3344333 5767667 9999999999987721 10 0112467899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccc
Q 014640 169 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 248 (421)
Q Consensus 169 vEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 248 (421)
+||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++.+ +++++.+++++..+++||++|+.+
T Consensus 66 iEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~ 144 (315)
T 3tc1_A 66 VEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFV 144 (315)
T ss_dssp HHHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999887 899999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccc
Q 014640 249 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 328 (421)
Q Consensus 249 ~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~ 328 (421)
..+...++++|++|+++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+|||.|+||+
T Consensus 145 ~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~ 221 (315)
T 3tc1_A 145 GECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFK 221 (315)
T ss_dssp TTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGG
T ss_pred CCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHH
Confidence 8777899999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhhC-chHHHHHHcccC--CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH
Q 014640 329 HGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 405 (421)
Q Consensus 329 ~Gk~TlPvl~Ale~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~ 405 (421)
+||+|+|+++|++.. |+.++.+.+.+. ++++++++++++.++|++++|+.++++|.++|.+.|+.||+++ +
T Consensus 222 egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~ 295 (315)
T 3tc1_A 222 EGKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------L 295 (315)
T ss_dssp GTCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------H
T ss_pred cCChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------H
Confidence 999999999999984 455555544333 6788999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHH
Q 014640 406 RRALLDLTHRVI 417 (421)
Q Consensus 406 r~~L~~l~~~~~ 417 (421)
|+.|..|++++.
T Consensus 296 r~~L~~l~~~~~ 307 (315)
T 3tc1_A 296 EKLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=7.7e-66 Score=516.10 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=239.0
Q ss_pred HHHHHHHhh---hcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014640 94 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 170 (421)
Q Consensus 94 v~~~l~~~~---~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 170 (421)
|++.+.+.+ .+.+|.+.++.+|++..| |||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 556665555 456688999999999988 99999999999999998531 25789999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHHHHh
Q 014640 171 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQ 245 (421)
Q Consensus 171 liH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~-----v~~~ls~~~~~l~~Gq~~d 245 (421)
|||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..+++ +++.+++++..+++||++|
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987766 9999999999999999999
Q ss_pred ccccCCC---CCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCC
Q 014640 246 MTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 322 (421)
Q Consensus 246 l~~~~~~---~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~ 322 (421)
+.+..+. ..++++|++++++|||+||+++|++|++++|.++ ..+.+++||+++|+||||+||++||+++++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9876543 5699999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred cccccccCcccHHHHHHHhhCch---------HHHHHHcccCCchHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH--
Q 014640 323 SLSDIRHGIITAPILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-- 390 (421)
Q Consensus 323 ~g~Dl~~Gk~TlPvl~Ale~~~~---------l~~~l~~~~~~~~~~~~i~~li~-~sg~i~~a~~~a~~~~~~A~~~-- 390 (421)
.|+||++||+|+|+++|++..+. +.+++.+...+.+..++++++|. ++|++++|++++++|.++|.+.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~ 309 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNE 309 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--
T ss_pred chhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987543 45556554433444458999999 9999999999999999999999
Q ss_pred ---hccCCCCCCcchHHHHHHHHHHHHHHHh
Q 014640 391 ---IDSLPENNDEDVTKSRRALLDLTHRVIT 418 (421)
Q Consensus 391 ---L~~lp~~~~~~~~~~r~~L~~l~~~~~~ 418 (421)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 310 ~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 310 NKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------------------
T ss_pred cccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987511 11278999999999865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.3e-65 Score=506.33 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=254.1
Q ss_pred HHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 014640 98 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 177 (421)
Q Consensus 98 l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsL 177 (421)
+++.+.+.+|.+.++.+|++..| |||+||.|++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 46677788899999999999988 99999999999999987531 257899999999999999
Q ss_pred hhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCCC-CCCH
Q 014640 178 LHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM 256 (421)
Q Consensus 178 IHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~ 256 (421)
|||||||+|++|||+||+|.+||+++|||+||||+++|+..+++..++++++.+++++..+++||.+|+.+..+. ..++
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999998888899999999999999999999875443 5799
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHH
Q 014640 257 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 336 (421)
Q Consensus 257 ~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPv 336 (421)
++|++|+++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|+|+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 999999999999999999999999999874 4899999999999999999999999999999999999999999999
Q ss_pred HHHHhhCc---hHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014640 337 LFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 413 (421)
Q Consensus 337 l~Ale~~~---~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~ 413 (421)
++|++..| .+.+++.....+.+..+.++++|.++|++++|++++++|.++|.+.|+.||+++ .|..++
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~ 289 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALV 289 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHH
Confidence 99998754 356666554433333444999999999999999999999999999999999876 388999
Q ss_pred HHHHhccC
Q 014640 414 HRVITRNK 421 (421)
Q Consensus 414 ~~~~~R~k 421 (421)
+++.+|.|
T Consensus 290 ~~l~~~~~ 297 (301)
T 2q80_A 290 KHLSKMFK 297 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99988764
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=5.8e-64 Score=497.67 Aligned_cols=284 Identities=26% Similarity=0.352 Sum_probs=241.7
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhH
Q 014640 78 EEQLDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 154 (421)
Q Consensus 78 ~~~~d~~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~ 154 (421)
....+....++++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 28 ~~~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------- 94 (324)
T 3uca_A 28 KTLEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK----------- 94 (324)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG-----------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------
Confidence 3456677889999999999999999865 788999999999988 999999999999999987532
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC--C----HH
Q 014640 155 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TE 226 (421)
Q Consensus 155 ~~~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~--~----~~ 226 (421)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .+
T Consensus 95 ------~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~ 168 (324)
T 3uca_A 95 ------KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALK 168 (324)
T ss_dssp ------GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 5778999999999999999999 99999999999999999999999999999999999998743 1 46
Q ss_pred HHHHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 014640 227 VVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 304 (421)
Q Consensus 227 v~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQ 304 (421)
+++.++++. ..+++||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+|||
T Consensus 169 ~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQ 248 (324)
T 3uca_A 169 ATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQ 248 (324)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 788888886 689999999999987767899999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014640 305 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 384 (421)
Q Consensus 305 I~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 384 (421)
|+||++|++++++.+|||.|+|+++||+|||++++ +++|++.+++|.
T Consensus 249 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~ 295 (324)
T 3uca_A 249 IKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNIT 295 (324)
T ss_dssp HHHHHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 468899999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 385 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 385 ~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++|++.|+.||++. +.|.+|++++++|++
T Consensus 296 ~~A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 296 EECIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 99999999999754 799999999999975
No 18
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=5e-63 Score=499.96 Aligned_cols=299 Identities=16% Similarity=0.144 Sum_probs=263.1
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
+.+.++.+|.+ .| |||+||+|++++++++|++.+.+ ......+.+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46888888887 47 99999999999999997642100 00001123344458899999999999999999999
Q ss_pred CCCCCCCcchhccCh--HHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhcccc----------
Q 014640 187 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 249 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~--~~Avl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~---------- 249 (421)
++|||+||+|.+||+ ++|||+||||+++|+..+++. .+.++++.+++++..+++||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999875 457899999999999999999999876
Q ss_pred -C--CC---CCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCC
Q 014640 250 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 321 (421)
Q Consensus 250 -~--~~---~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK 321 (421)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 3 22 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CcccccccCcccHHHHHHHhhCc-hHHHHHHcccC--CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014640 322 GSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 398 (421)
Q Consensus 322 ~~g~Dl~~Gk~TlPvl~Ale~~~-~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 398 (421)
.|+||++||+|+|+++|++..+ +.++.+.+.+. ++++++++++++.++|+++++++++++|.++|.+.|+.||+++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 8999999999999999999854 45565655443 3578999999999999999999999999999999999999998
Q ss_pred CcchHHHH--HHHHHHHHHHHhccC
Q 014640 399 DEDVTKSR--RALLDLTHRVITRNK 421 (421)
Q Consensus 399 ~~~~~~~r--~~L~~l~~~~~~R~k 421 (421)
.+ +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 88 999999999999986
No 19
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=7.8e-63 Score=488.22 Aligned_cols=279 Identities=27% Similarity=0.378 Sum_probs=229.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcC--chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014640 82 DPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159 (421)
Q Consensus 82 d~~~~i~~el~~v~~~l~~~~~~~--~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
+....+++..+.|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++.
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~----------------- 64 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS----------------- 64 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------
Confidence 344567788889999999998765 678999999999988 99999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH
Q 014640 160 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL 231 (421)
Q Consensus 160 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~------~~v~~~l 231 (421)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++..+ .++++.+
T Consensus 65 ~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~l 144 (317)
T 4f62_A 65 SLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQEL 144 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 26889999999999999999999 999999999999999999999999999999999999998642 3577888
Q ss_pred HHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhc
Q 014640 232 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 308 (421)
Q Consensus 232 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD 308 (421)
++++ ..+++||.+|+.+... ..++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 145 a~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 223 (317)
T 4f62_A 145 VVASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDD 223 (317)
T ss_dssp HHHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 4799999999998754 5899999999999999999999999999999 8999999999999999999999999
Q ss_pred cccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014640 309 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 388 (421)
Q Consensus 309 llD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~ 388 (421)
++|++++++.+|||.|+|+++||+|+|+|+ |+++|++.+++|.++|+
T Consensus 224 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 224 IIDLTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHTC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 46899999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 389 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 389 ~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+.|+.||+ .++.|.+|++++++|++
T Consensus 271 ~~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 271 AQISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 99999985 35899999999999974
No 20
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=4.7e-63 Score=491.14 Aligned_cols=279 Identities=27% Similarity=0.328 Sum_probs=242.1
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014640 82 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 158 (421)
Q Consensus 82 d~~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+....+.+..+.|++.|.+.+... ++.+.++.+|.+..| |||+||+|++++++++|++..
T Consensus 8 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~--------------- 70 (324)
T 3ts7_A 8 SLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD--------------- 70 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 445678888999999999988753 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC--C------HHHH
Q 014640 159 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVV 228 (421)
Q Consensus 159 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~--~------~~v~ 228 (421)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .+++
T Consensus 71 --~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i 148 (324)
T 3ts7_A 71 --LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMI 148 (324)
T ss_dssp --GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999874 2 3578
Q ss_pred HHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhh
Q 014640 229 TLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQL 305 (421)
Q Consensus 229 ~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI 305 (421)
+.+++++ ..+++||.+|+.+..+ ..++++|++|+++|||+||++||++|++++| ++++..+.+++||+++|+||||
T Consensus 149 ~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI 227 (324)
T 3ts7_A 149 ETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQI 227 (324)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888885 7899999999998776 7899999999999999999999999999999 8999999999999999999999
Q ss_pred hhccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014640 306 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 385 (421)
Q Consensus 306 ~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~ 385 (421)
+||++|++++++.+|||.|+|+++||+|+|+|+ |+++|++.+++|.+
T Consensus 228 ~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~ 274 (324)
T 3ts7_A 228 QDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMHE 274 (324)
T ss_dssp HHHHHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 46899999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 386 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 386 ~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+|++.|+.||++. +.|.+|++++++|++
T Consensus 275 ~A~~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 275 AALESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999998754 789999999999974
No 21
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=9.4e-63 Score=499.23 Aligned_cols=295 Identities=18% Similarity=0.193 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
+.+.++.+|.. .| |||+||+||+++++++|++... +.+..+.+..+|+++||||+||||||||||+|
T Consensus 64 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~s 130 (374)
T 2qis_A 64 ARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDSS 130 (374)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 46889999877 57 9999999999999999863210 01223467889999999999999999999999
Q ss_pred CCCCCCCcchhccChH-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhccccCCC-----CCC
Q 014640 187 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 255 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~~-~Avl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 255 (421)
++|||+||+|.+||++ +||++||+|++.||..+++. .+.++++++++++..++.||.+|+.+.... ..+
T Consensus 131 ~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 210 (374)
T 2qis_A 131 LTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 210 (374)
T ss_dssp CEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCC
T ss_pred CCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 9999999999999999 99999999999999988864 347899999999999999999999886542 379
Q ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCccc
Q 014640 256 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333 (421)
Q Consensus 256 ~~~Yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~T 333 (421)
+++|++|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 211 ~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T 289 (374)
T 2qis_A 211 EKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCS 289 (374)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCcc
Confidence 999999999999999 9999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhC-chHHHHHHcccCC--chHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014640 334 APILFAMEEF-PQLRTVVEQGFED--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 410 (421)
Q Consensus 334 lPvl~Ale~~-~~l~~~l~~~~~~--~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 410 (421)
||++++++.. ++.++.+.+.+.. +++++++++++.++|+.++++..+++|.++|.+.|+.||+++ .|+.|.
T Consensus 290 ~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~ 363 (374)
T 2qis_A 290 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFL 363 (374)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 9999999985 4566666665543 678999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHhccC
Q 014640 411 DLTHRVITRNK 421 (421)
Q Consensus 411 ~l~~~~~~R~k 421 (421)
.+++++++|+|
T Consensus 364 ~l~~~i~~R~k 374 (374)
T 2qis_A 364 GLARKIYKRRK 374 (374)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHcCcC
Confidence 99999999986
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=2.5e-63 Score=489.98 Aligned_cols=273 Identities=27% Similarity=0.348 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHhhhc--CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014640 90 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 167 (421)
Q Consensus 90 el~~v~~~l~~~~~~--~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 167 (421)
..+.|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.++.+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHH
Confidence 455688888888766 5678999999999988 99999999999999998642 14578999
Q ss_pred HHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--HH
Q 014640 168 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EH 237 (421)
Q Consensus 168 avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~------~~~~v~~~ls~~~--~~ 237 (421)
++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++. ...++++.+++++ ..
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999987 3456888999998 88
Q ss_pred HHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 014640 238 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 317 (421)
Q Consensus 238 l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~ 317 (421)
+++||.+|+.+..+ ..++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~ 228 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEA 228 (301)
T ss_dssp HHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999988765 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014640 318 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 397 (421)
Q Consensus 318 ~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 397 (421)
.+|||.|+|+++||+|+|+++++ +++++.+++|.++|++.|+.||++
T Consensus 229 ~~GK~~g~Dl~~gK~T~p~l~al---------------------------------~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 229 KLGKKVGSDLENNKSTYVSLLGK---------------------------------DGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp C-------------CCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HhCCCcchHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999963 577899999999999999999988
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014640 398 NDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 398 ~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+ .++.|.+|++++++|++
T Consensus 276 ~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 276 F------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp S------CCHHHHHHHHHHHCC--
T ss_pred h------HHHHHHHHHHHHHHhhc
Confidence 7 78899999999999964
No 23
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.1e-63 Score=493.53 Aligned_cols=277 Identities=25% Similarity=0.318 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhc--------CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 014640 84 FSLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 155 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~--------~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~ 155 (421)
...++++++.|++.|.+.+.. .++.+.++++|++..| |||+||.|++++++++|++.
T Consensus 40 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~------------- 104 (335)
T 2h8o_A 40 ETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA------------- 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-------------
Confidence 456778889999999998866 4678999999999988 99999999999999998641
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC-------CCHH
Q 014640 156 TELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-------KNTE 226 (421)
Q Consensus 156 ~~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~-------~~~~ 226 (421)
+.++.+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++. ...+
T Consensus 105 ----~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~ 180 (335)
T 2h8o_A 105 ----EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAA 180 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 25789999999999999999999 9999999999999999999999999999999999999987 1346
Q ss_pred HHHHHHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 014640 227 VVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 304 (421)
Q Consensus 227 v~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQ 304 (421)
+++.+++++ ..+++||.+|+.+..+ ..++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+|||
T Consensus 181 ~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQ 259 (335)
T 2h8o_A 181 LVISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQ 259 (335)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 888999998 8899999999988766 6899999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014640 305 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 384 (421)
Q Consensus 305 I~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 384 (421)
|+||++|++++++.+|||.|+|+++||.|+|++++ ++++++.+++|.
T Consensus 260 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~~ 306 (335)
T 2h8o_A 260 LADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQV 306 (335)
T ss_dssp HHHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 468899999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 385 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 385 ~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++|++.|+.||+ .++.|.+|++++++|++
T Consensus 307 ~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 307 AEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 999999999984 35799999999999974
No 24
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=3e-63 Score=489.22 Aligned_cols=280 Identities=26% Similarity=0.381 Sum_probs=255.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
...+.++++.|++.|++.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 4 ~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 64 (299)
T 1rqj_A 4 PQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------N 64 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3467788899999999988764 678999999999988 99999999999999998642 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC--------CCHHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--------KNTEVVTL 230 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~--------~~~~v~~~ 230 (421)
.++.+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++. ...++++.
T Consensus 65 ~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (299)
T 1rqj_A 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISE 144 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHH
Confidence 6789999999999999999999 9999999999999999999999999999999999999985 12357888
Q ss_pred HHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhhhh
Q 014640 231 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLID 307 (421)
Q Consensus 231 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~l-ag~~~~~~~~l~~~G~~lG~AfQI~D 307 (421)
+++++ ..+++||.+|+.+..+ ..++++|++|+.+|||+||++||++|+++ +|++++..+.+++||.++|+||||+|
T Consensus 145 l~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~D 223 (299)
T 1rqj_A 145 LASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQD 223 (299)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 7999999999998766 68999999999999999999999999999 99989999999999999999999999
Q ss_pred ccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014640 308 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 387 (421)
Q Consensus 308 DllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 387 (421)
|++|++++++.+|||.|+|+++||+|+|+++++ ++++..+++|.++|
T Consensus 224 D~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~A 270 (299)
T 1rqj_A 224 DILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDA 270 (299)
T ss_dssp HHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999965 46789999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 388 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 388 ~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++.|+.||++.. .++.|.+|++++++|++
T Consensus 271 ~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 271 RQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 999999997331 57899999999999975
No 25
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.5e-62 Score=484.42 Aligned_cols=277 Identities=28% Similarity=0.365 Sum_probs=240.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
...+....+.|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++..
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 64 (304)
T 3lsn_A 4 TAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE----------------- 64 (304)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------
Confidence 3567778888999999998765 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC----C----HHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----N----TEVVTL 230 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~----~----~~v~~~ 230 (421)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .++++.
T Consensus 65 ~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (304)
T 3lsn_A 65 QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTT 144 (304)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999874 2 357888
Q ss_pred HHHHHH--HHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhhh
Q 014640 231 LATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLID 307 (421)
Q Consensus 231 ls~~~~--~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~AfQI~D 307 (421)
+++++. .++.||.+|+.+..+ ..++++|++|+.+|||+||++||++|++++|+ +++..+.+++||.++|+||||+|
T Consensus 145 l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~D 223 (304)
T 3lsn_A 145 LAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQD 223 (304)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888884 599999999998765 48999999999999999999999999999999 89899999999999999999999
Q ss_pred ccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014640 308 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 387 (421)
Q Consensus 308 DllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 387 (421)
|++|++++++.+|||.|+|+++||+|||+|+ ++++|++.+++|.++|
T Consensus 224 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 224 DILDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4678999999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 388 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 388 ~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++.|+.||+. ++.|.+|++++++|++
T Consensus 271 ~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 271 LHALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp HHHTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred HHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 9999999853 5899999999999964
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.7e-62 Score=483.32 Aligned_cols=275 Identities=30% Similarity=0.387 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHhhhc--CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHH
Q 014640 87 VADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 164 (421)
Q Consensus 87 i~~el~~v~~~l~~~~~~--~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (421)
-+..++.|++.|.+.+.. .++.+.++.+|.+..| |||+||.|++++++++|++.. +.+..
T Consensus 14 ~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~~ 75 (302)
T 3p8l_A 14 SQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDYQ 75 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHHH
T ss_pred hHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHHH
Confidence 345677788888888775 4678999999999988 999999999999999987532 26789
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--
Q 014640 165 IAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV-- 235 (421)
Q Consensus 165 lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-----~~v~~~ls~~~-- 235 (421)
+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++... .++++.+++++
T Consensus 76 ~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~ 155 (302)
T 3p8l_A 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGN 155 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhh
Confidence 999999999999999999 999999999999999999999999999999999999998532 36788888887
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 014640 236 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 236 ~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~ 315 (421)
..++.||.+|+.+... ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 156 ~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d 234 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATST 234 (302)
T ss_dssp TTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7899999999988765 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014640 316 SASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 395 (421)
Q Consensus 316 ~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 395 (421)
++.+|||.|+|+++||+|||++++ ++++++.+++|.++|.+.|+.||
T Consensus 235 ~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 235 EADLGKKVGRDEALNKSTYPALLG---------------------------------IAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp ----------------CCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHhcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999994 57888999999999999999998
Q ss_pred C---CCCcchHHHHHHHHHHHHHHHhc
Q 014640 396 E---NNDEDVTKSRRALLDLTHRVITR 419 (421)
Q Consensus 396 ~---~~~~~~~~~r~~L~~l~~~~~~R 419 (421)
+ ++ .++.|.+|++++++|
T Consensus 282 ~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 282 ANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHCSSC------CHHHHHHHHHHTSCC
T ss_pred cccCCh------hHHHHHHHHHHHhhC
Confidence 6 66 678999999999987
No 27
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.4e-62 Score=484.47 Aligned_cols=277 Identities=25% Similarity=0.344 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
...+...++.|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++..
T Consensus 10 ~~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 70 (302)
T 3p8r_A 10 LEALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS----------------- 70 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------
Confidence 4467888999999999998764 568999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC--C------HHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTL 230 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~--~------~~v~~~ 230 (421)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .++++.
T Consensus 71 ~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 150 (302)
T 3p8r_A 71 DLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQA 150 (302)
T ss_dssp GTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999874 1 357888
Q ss_pred HHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhh
Q 014640 231 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLID 307 (421)
Q Consensus 231 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~D 307 (421)
+++++ ..++.||.+|+.+.. ...++++|++|+.+|||+||++||++|++++| ++++..+.+++||+++|+||||+|
T Consensus 151 l~~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~D 229 (302)
T 3p8r_A 151 LAEASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQD 229 (302)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 689999999999874 46899999999999999999999999999999 788888999999999999999999
Q ss_pred ccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014640 308 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 387 (421)
Q Consensus 308 DllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 387 (421)
|++|++++++.+|||.|+|+++||+|||++++ +++|++.+++|.++|
T Consensus 230 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 230 DILDIISDTETLGKPQGSDQELNKSTYPALLG---------------------------------LEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHTTC---------------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCCcchHHhcCCchHHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999994 578999999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 388 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 388 ~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++.|+.||++. +.|.+|++++++|++
T Consensus 277 ~~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 277 LLALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 99999999765 699999999999975
No 28
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=3.4e-62 Score=494.02 Aligned_cols=295 Identities=20% Similarity=0.196 Sum_probs=265.1
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
+.+.++.+|.+ .| |||+||+||+++++++|++.+. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 36889999988 48 9999999999999999863110 01222467899999999999999999999999
Q ss_pred CCCCCCCcchhccChH-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhccccCCC-----CCC
Q 014640 187 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 255 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~~-~Avl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 255 (421)
++|||+||+|.+||++ ++|+.||++++.||..+++. .+.++++++++++..+++||.+|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999999874 347899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCccc
Q 014640 256 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333 (421)
Q Consensus 256 ~~~Yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~T 333 (421)
+++|++|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhh-CchHHHHHHcccC--CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014640 334 APILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 410 (421)
Q Consensus 334 lPvl~Ale~-~~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 410 (421)
||++++++. .++.++.+.+.+. ++++++++++++.++|+.+.++..+++|.++|.+.|+.||+++ .|+.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999998 4566666766554 3678999999999999888888999999999999999999888 899999
Q ss_pred HHHHHHHhccC
Q 014640 411 DLTHRVITRNK 421 (421)
Q Consensus 411 ~l~~~~~~R~k 421 (421)
.+++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 29
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.4e-62 Score=498.34 Aligned_cols=323 Identities=17% Similarity=0.147 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-------chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014640 85 SLVADELSILAKRLRSMVVAE-------VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 157 (421)
Q Consensus 85 ~~i~~el~~v~~~l~~~~~~~-------~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~ 157 (421)
..+.+-...|++.|.+.+.+. .+.+.++.+|.+ .| |||+||+||+++++++++..+.. .+ ...+..
T Consensus 27 ~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~---~~~~~~ 99 (390)
T 3dyh_A 27 QMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NG---EEDDGA 99 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC-------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-cc---cccccC
Confidence 334444444555554443321 235889999998 78 99999999999999987510000 00 000000
Q ss_pred hHHHHHHHHH----HHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHH--HHHHHcC-CC----HH
Q 014640 158 LRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-KN----TE 226 (421)
Q Consensus 158 ~~~~~~~lA~----avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A--~~~la~~-~~----~~ 226 (421)
..+..+++|+ ++||||+||||||||||+|++|||+||+|..||+++||++||+++..+ +.++++. .+ .+
T Consensus 100 ~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~ 179 (390)
T 3dyh_A 100 RRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQD 179 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 1124455555 899999999999999999999999999999999999999999999765 5777653 21 47
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-----------CC-----CCCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcCCCHHH-
Q 014640 227 VVTLLATVVEHLVTGETMQMTTS-----------SD-----QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV- 288 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~-----------~~-----~~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag~~~~~- 288 (421)
+++++++++..++.||.+|+.+. .. ...++++|++|+++|||+| |++||++|++++|++++.
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~ 259 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 89999999999999999999872 11 2579999999999999999 999999999999998875
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHHHHhh-CchHHHHHHcccC--CchHHHHHHH
Q 014640 289 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVDIALE 365 (421)
Q Consensus 289 ~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~-~~~l~~~l~~~~~--~~~~~~~i~~ 365 (421)
.+.+++||.+||+||||+||++|++++++.+|| .|+||++||+|||+++|++. .|+.++.+.+.+. ++++++++++
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~ 338 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRR 338 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788999999999999999999999999999999 99999999999999999998 4666677766554 5678999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH--HHHHHHHHHHHHhccC
Q 014640 366 YLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS--RRALLDLTHRVITRNK 421 (421)
Q Consensus 366 li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~--r~~L~~l~~~~~~R~k 421 (421)
++.++|++++++++++++.++|.+.|+.||+++ . ++.|..|++++++|+|
T Consensus 339 l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~------~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 339 LYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS------PGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHTTTTCCC
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999988 5 8999999999999987
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.1e-62 Score=496.75 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=244.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
+.+.++.+|.. .| |||+||+||+++++++|++.. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~a~~lA~aiEliH~asLIHDDImD~s 131 (395)
T 2ihi_A 66 KYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCC-----------ChhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 45778899988 68 999999999999999986421 11234578899999999999999999999999
Q ss_pred CCCCCCCcchhccChHH--HHHHHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHHHHHhcc------------
Q 014640 187 DTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-K----NTEVVTLLATVVEHLVTGETMQMT------------ 247 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~~~--Avl~GD~Lla~A~~~la~~-~----~~~v~~~ls~~~~~l~~Gq~~dl~------------ 247 (421)
++|||+||+|++||++. ||++||+|++.++.++++. . ..++++++++++..++.||.+|+.
T Consensus 132 ~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 2ihi_A 132 EMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp SEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSC
T ss_pred CCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccc
Confidence 99999999999999998 9999999999999998763 1 268999999999999999999992
Q ss_pred ------ccC-CC-----CCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHhhhhhccccc
Q 014640 248 ------TSS-DQ-----RCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDF 312 (421)
Q Consensus 248 ------~~~-~~-----~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag~~~~~--~~~l~~~G~~lG~AfQI~DDllD~ 312 (421)
+.+ .. ..++++|++|+.+|||+| |.+||++|++++|++++. .+.++.||.+||+||||+||++|+
T Consensus 212 ~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~ 291 (395)
T 2ihi_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11 578999999999999999 999999999999999887 899999999999999999999999
Q ss_pred cccccccCCCcccccccCcccHHHHHHHhh-CchHHHHHHcccC--CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014640 313 TGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 389 (421)
Q Consensus 313 ~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~-~~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~ 389 (421)
+++++.+|| .|+||++||+|||++++++. .|+.++.+.+.+. ++++++++++++.++|+++++++.++++.++|.+
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~ 370 (395)
T 2ihi_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILS 370 (395)
T ss_dssp CC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999998 4666666655554 5678999999999999999999999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014640 390 AIDSLPENNDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 390 ~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
.|+.||+++ .|+.|..+++++++|.
T Consensus 371 ~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 371 AINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHTTSCCHH------HHHHHHHHHHC-----
T ss_pred HHHhCCCch------HHHHHHHHHHHHhccC
Confidence 999999988 9999999999999983
No 31
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=7.8e-62 Score=477.86 Aligned_cols=274 Identities=27% Similarity=0.322 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 162 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
...+++....|++.|.+.+... ++.+.++.+|. ..| |||+||.|++++++++|++. +.+
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~ 63 (297)
T 3m0g_A 4 SERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------AQA 63 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------HHH
Confidence 3456777888999999988765 56899999999 878 99999999999999998642 368
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHH
Q 014640 163 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLATV 234 (421)
Q Consensus 163 ~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~------~~v~~~ls~~ 234 (421)
..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++... .++++.++++
T Consensus 64 ~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~ 143 (297)
T 3m0g_A 64 MPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQA 143 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 89999999999999999999 999999999999999999999999999999999999988641 3688899999
Q ss_pred H--HHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014640 235 V--EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 311 (421)
Q Consensus 235 ~--~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD 311 (421)
+ ..++.||.+|+.+.. ....++++|++|+.+|||+||++||++|++++|++++ .+++||.++|+||||+||++|
T Consensus 144 ~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD 220 (297)
T 3m0g_A 144 SGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILD 220 (297)
T ss_dssp HSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC-
T ss_pred HhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 8 889999999998862 3368999999999999999999999999999999877 799999999999999999999
Q ss_pred ccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014640 312 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391 (421)
Q Consensus 312 ~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 391 (421)
++++++.+|||.|+|+++||+|||++++ +++|++.++++.++|++.|
T Consensus 221 ~~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L 267 (297)
T 3m0g_A 221 VEGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAAL 267 (297)
T ss_dssp --------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 4678899999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 392 DSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 392 ~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+.||++. +.|.+|++++++|++
T Consensus 268 ~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 268 APYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp GGGGGGG--------HHHHHHHHHHTC---
T ss_pred HhCCCCH--------HHHHHHHHHHHHhcc
Confidence 9999765 789999999999974
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.5e-61 Score=478.90 Aligned_cols=276 Identities=26% Similarity=0.362 Sum_probs=237.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC---chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 160 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~---~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
...+.+..+.|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++. +
T Consensus 10 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 70 (313)
T 3lom_A 10 KQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------G 70 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3456667778899999888753 678999999999988 99999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC--------CHHHHHH
Q 014640 161 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVTL 230 (421)
Q Consensus 161 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~--------~~~v~~~ 230 (421)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. ..++++.
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~ 150 (313)
T 3lom_A 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQV 150 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 6889999999999999999999 99999999999999999999999999999999999998751 1247788
Q ss_pred HHHHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhhh
Q 014640 231 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLI 306 (421)
Q Consensus 231 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~AfQI~ 306 (421)
+++++ ..++.||.+|+.+..+...++++|++|+.+|||+||+++|++ |+++| ++++..+.+++||.++|+||||+
T Consensus 151 la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~ 229 (313)
T 3lom_A 151 LVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQ 229 (313)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 689999999999987767899999999999999999999999 99999 89999999999999999999999
Q ss_pred hccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014640 307 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 386 (421)
Q Consensus 307 DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 386 (421)
||++|++++++.+|||.|+|+++||+|||+++ |+++|++.++++.++
T Consensus 230 DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 276 (313)
T 3lom_A 230 DDYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQI 276 (313)
T ss_dssp HHHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 467889999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014640 387 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 387 A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
|.+.|+.||++. +.|.+|++++++|+
T Consensus 277 A~~~L~~l~~~~--------~~L~~la~~~~~R~ 302 (313)
T 3lom_A 277 AMDSLRLFGSKA--------AALIELTKQLQNRS 302 (313)
T ss_dssp HHHTTTTTGGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccH--------HHHHHHHHHHHhcc
Confidence 999999998653 79999999999996
No 33
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.5e-61 Score=491.45 Aligned_cols=290 Identities=19% Similarity=0.201 Sum_probs=239.7
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014640 109 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADT 188 (421)
Q Consensus 109 l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~ 188 (421)
+..+.+|.+. | |||+||+||+++++++++... ..+..+.++.+|++|||||+||||||||||+|++
T Consensus 68 ~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~-----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~ 133 (395)
T 3mav_A 68 YKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEM 133 (395)
T ss_dssp HHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCC-----------CcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCCC
Confidence 5555667664 8 999999999999999986432 1233457899999999999999999999999999
Q ss_pred CCCCCcchhccChHHHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhccccCC----------
Q 014640 189 RRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD---------- 251 (421)
Q Consensus 189 RRG~pt~~~~~G~~~Avl~GD~Lla--~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~---------- 251 (421)
|||+||+|.+||+++||++||+|+. .++.++... ...++++.+++++..+++||.+|+.+..+
T Consensus 134 RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~ 213 (395)
T 3mav_A 134 RRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREID 213 (395)
T ss_dssp ETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCC
T ss_pred CCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhh
Confidence 9999999999999999999999774 456665532 24678999999999999999999865321
Q ss_pred --------------CCCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhhccccccc
Q 014640 252 --------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFTG 314 (421)
Q Consensus 252 --------------~~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag~~--~~~~~~l~~~G~~lG~AfQI~DDllD~~~ 314 (421)
...++++|++|+++|||+| |.+||.+|++++|.+ ++..+.+++||.+||+||||+||+||+++
T Consensus 214 ~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~g 293 (395)
T 3mav_A 214 VNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFG 293 (395)
T ss_dssp SSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2468999999999999999 999999999999985 34678999999999999999999999999
Q ss_pred cccccCCCcccccccCcccHHHHHHHhhC-chHHHHHHcccC--CchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014640 315 TSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391 (421)
Q Consensus 315 ~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~-~~l~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 391 (421)
+++.+|| +|+||++||+|||+++|++.. ++.+..+.+.+. ++++++.+.+++.++|+.+++++.++++.++|.+.|
T Consensus 294 d~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l 372 (395)
T 3mav_A 294 DSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAI 372 (395)
T ss_dssp --------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999 599999999999999999974 455555555443 567888999999999999999999999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014640 392 DSLPENNDEDVTKSRRALLDLTHRVITR 419 (421)
Q Consensus 392 ~~lp~~~~~~~~~~r~~L~~l~~~~~~R 419 (421)
+.+|.+. .+..|..+++++.++
T Consensus 373 ~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 373 NELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HTSCCHH------HHHHHHHHHHHC---
T ss_pred HhCCcHH------HHHHHHHHHHHHhcC
Confidence 9999877 888888888888765
No 34
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.5e-61 Score=477.56 Aligned_cols=279 Identities=24% Similarity=0.324 Sum_probs=241.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcC--chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014640 84 FSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 161 (421)
Q Consensus 84 ~~~i~~el~~v~~~l~~~~~~~--~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (421)
...+++.++.|++.|.+.+... ++.+.++.+|.+..| |||+||.|++++++++|++.. +
T Consensus 9 ~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 69 (309)
T 3pde_A 9 IAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------P 69 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------H
Confidence 4567788888999999888765 678999999999988 999999999999999987542 4
Q ss_pred H--HHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHH
Q 014640 162 Q--QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLA 232 (421)
Q Consensus 162 ~--~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-----~~v~~~ls 232 (421)
. ..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++... .++++.++
T Consensus 70 ~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~ 149 (309)
T 3pde_A 70 ERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALA 149 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5 89999999999999999999 999999999999999999999999999999999999998642 36788899
Q ss_pred HHH--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccc
Q 014640 233 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 310 (421)
Q Consensus 233 ~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDll 310 (421)
+++ ..++.||.+|+.+... ..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 150 ~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 150 TAAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp HHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 7899999999988755 6899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014640 311 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 390 (421)
Q Consensus 311 D~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 390 (421)
|++++++.+|||+|+|+++||+|||+++++ +++...++++.++|.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------------------IGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHCC-----------CTTTSSSHHHHHCH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHHHH---------------------------------HHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999965 56678889999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 391 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 391 L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
|+.+|.+-. .+. |.++++++++|+.
T Consensus 276 l~~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 276 LQGLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp HHTSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred HHHhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 999877631 233 9999999999963
No 35
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=1.7e-61 Score=475.14 Aligned_cols=272 Identities=26% Similarity=0.392 Sum_probs=236.8
Q ss_pred HHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHH
Q 014640 91 LSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 169 (421)
Q Consensus 91 l~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 169 (421)
...|++.|.+.+... .|.+.++++|.+..| |||+||.|++++++++|++.. .+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 356777777777653 378999999999988 999999999999999987532 567899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcccc
Q 014640 170 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 249 (421)
Q Consensus 170 EliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~ 249 (421)
||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..++... +++++.+++++..+++||.+|+.+.
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLE 150 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHcc
Confidence 999999999999999999999999999999999999999999999999998764 7899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCccccccc
Q 014640 250 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 329 (421)
Q Consensus 250 ~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~ 329 (421)
.+. +++++|++++++|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++ || |+.+
T Consensus 151 ~~~-~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~ 223 (295)
T 3ipi_A 151 DES-FGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKF 223 (295)
T ss_dssp ------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---------
T ss_pred CCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----Cccc
Confidence 653 7889999999999999999999999999999999999999999999999999999999998763 55 5789
Q ss_pred CcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 014640 330 GIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 409 (421)
Q Consensus 330 Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L 409 (421)
||+|+|+||+++..+ .+++++|++.+++|.++|++.|+.||+++ .++.|
T Consensus 224 gk~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L 272 (295)
T 3ipi_A 224 TSETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKL 272 (295)
T ss_dssp --CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHH
T ss_pred CcccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 999999999986532 24699999999999999999999999998 99999
Q ss_pred HHHHHHHHhcc
Q 014640 410 LDLTHRVITRN 420 (421)
Q Consensus 410 ~~l~~~~~~R~ 420 (421)
.+|+++++.|.
T Consensus 273 ~~l~~~~~~~~ 283 (295)
T 3ipi_A 273 FQITDYITVDM 283 (295)
T ss_dssp HHHHHHTTGGG
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-61 Score=469.60 Aligned_cols=266 Identities=26% Similarity=0.334 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHhhhc-CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHH
Q 014640 90 ELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 168 (421)
Q Consensus 90 el~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 168 (421)
..++|+..|.+.+.. .++.+.++++|++..| |||+||.|++++++++|++. +.+..+|++
T Consensus 14 ~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~a 74 (284)
T 2ftz_A 14 KXEXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVA 74 (284)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHH
Confidence 345666777676633 3568999999999988 99999999999999998641 257899999
Q ss_pred HHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 014640 169 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 246 (421)
Q Consensus 169 vEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl 246 (421)
+||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++..+.++++.+++++..+++||.+|+
T Consensus 75 vEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl 154 (284)
T 2ftz_A 75 VELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDV 154 (284)
T ss_dssp HHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999 9999999999999999999999999999999999999998777899999999999999999999
Q ss_pred cccCCC-CCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCccc
Q 014640 247 TTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 325 (421)
Q Consensus 247 ~~~~~~-~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~ 325 (421)
.+..+. ..++++|++++++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|||.|+
T Consensus 155 ~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~ 231 (284)
T 2ftz_A 155 EFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGK 231 (284)
T ss_dssp HHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_pred HhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcch
Confidence 887665 78999999999999999999999999999999877 89999999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH
Q 014640 326 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 405 (421)
Q Consensus 326 Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~ 405 (421)
|++ |+|+|++++ ++++++++++|.++|++.|+.||+ + .
T Consensus 232 Dl~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~ 269 (284)
T 2ftz_A 232 DTE--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------R 269 (284)
T ss_dssp -------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------H
T ss_pred hcc--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------h
Confidence 999 999999995 457889999999999999999997 6 7
Q ss_pred HHH-HHHHHHHHHhc
Q 014640 406 RRA-LLDLTHRVITR 419 (421)
Q Consensus 406 r~~-L~~l~~~~~~R 419 (421)
++. |.+|++++++|
T Consensus 270 ~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 270 TLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 888 99999999987
No 37
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.2e-62 Score=490.93 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=254.8
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
+.+.++..|.. .| |||+||++|+++++++|+..++ ..+.+..+|+++||||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~-------------~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc-------------cHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 55777888877 68 9999999999999999763221 12478899999999999999999999999
Q ss_pred CCCCCCCcchhccChHHHHHHHHHHH---HHHHHHHHcC-C---CHHHHHHHHHHHHHHHHHHHHhccccCCC-CCCH-H
Q 014640 187 DTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-D 257 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~~~Avl~GD~Ll---a~A~~~la~~-~---~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~-~ 257 (421)
++|||+||+|.+||+.+|||+||||+ +++|.++++. . ..++++++++++..+++||.+|+.+.... ..+. +
T Consensus 122 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 201 (368)
T 2her_A 122 KFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp CEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHH
Confidence 99999999999999999999999999 8888877763 2 24789999999999999999999887643 3445 9
Q ss_pred HHHHHHhhhhhhH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccH
Q 014640 258 YYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 334 (421)
Q Consensus 258 ~Yl~~i~~KTasL-~~~a~~~ga~lag~~~~~--~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~Tl 334 (421)
+|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++ .+|| .|+||++||+||
T Consensus 202 ~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~ 276 (368)
T 2her_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccH
Confidence 9999999999999 999999999999999887 8899999999999999999999999 6899 999999999999
Q ss_pred HHHHHHhh-CchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014640 335 PILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 413 (421)
Q Consensus 335 Pvl~Ale~-~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~ 413 (421)
|+++|++. .|+.++.+.+.+..++ +++++++.++|+++++++++++|.++|.+.|+.+|+++ .|+.|..|+
T Consensus 277 pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~ 348 (368)
T 2her_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHH
Confidence 99999997 4677788877776655 99999999999999999999999999999999999998 999999999
Q ss_pred HHHHhc
Q 014640 414 HRVITR 419 (421)
Q Consensus 414 ~~~~~R 419 (421)
+++.++
T Consensus 349 ~~i~~~ 354 (368)
T 2her_A 349 HQISEL 354 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=2.6e-58 Score=455.33 Aligned_cols=273 Identities=24% Similarity=0.294 Sum_probs=228.0
Q ss_pred HHHHHHHhhh---cCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014640 94 LAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 170 (421)
Q Consensus 94 v~~~l~~~~~---~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 170 (421)
|++.|.+.+. +.+|.+.++++|.+..| |||+||.|++++++++|++.. ..+..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHH
Confidence 8888888774 35678999999999988 999999999999999986420 1223357899999999
Q ss_pred HHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHHH
Q 014640 171 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTG 241 (421)
Q Consensus 171 liH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~--~~~---~~v~~~ls~~--~~~l~~G 241 (421)
|||+|||||||| ||+|++|||+||+|.+||+.+|||+||+|+++||..+++ +.+ .++++.++++ +..++.|
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999988 432 2477888888 5799999
Q ss_pred HHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHhhhhhccccccccccccC
Q 014640 242 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320 (421)
Q Consensus 242 q~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~-~~l~~~G~~lG~AfQI~DDllD~~~~~~~~G 320 (421)
|.+|+.+. +...++++|++|+.+|||+||++||++|++++|++++.. +.+++||.++|+||||+||++|++++++.+|
T Consensus 165 Q~lDl~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 243 (311)
T 3llw_A 165 QALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243 (311)
T ss_dssp HHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHC
Confidence 99999886 356899999999999999999999999999999998888 9999999999999999999999999999999
Q ss_pred CCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014640 321 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 400 (421)
Q Consensus 321 K~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 400 (421)
||.|+ ++||+|||+++++ +.++..++++.++|.+.|+.||.-..
T Consensus 244 K~~g~--~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~~~- 287 (311)
T 3llw_A 244 KTTHL--DSAKNSFVNLLGL---------------------------------ERANNYAQTLKTEVLNDLDALKPAYP- 287 (311)
T ss_dssp ---------CCSCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHTTSTTTCH-
T ss_pred ccccc--ccCcchHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHhhhccccCc-
Confidence 99877 9999999999955 56778899999999999999764220
Q ss_pred chHHH-HHHHHHHHHHHHhcc
Q 014640 401 DVTKS-RRALLDLTHRVITRN 420 (421)
Q Consensus 401 ~~~~~-r~~L~~l~~~~~~R~ 420 (421)
. .+.|.++++++++|.
T Consensus 288 ----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 288 ----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp ----HHHHHHHHHHHHHHC--
T ss_pred ----cHHHHHHHHHHHHHhcc
Confidence 2 578999999999995
No 39
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=3e-57 Score=445.13 Aligned_cols=269 Identities=31% Similarity=0.419 Sum_probs=234.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcCc-hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 158 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~~-p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 158 (421)
.-|+-..+.++++.|++.|++.+.... +.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 10 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~---------------- 71 (293)
T 2j1p_A 10 HTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE---------------- 71 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH----------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH----------------
Confidence 346667888899999999999887654 56999999999988 99999999999999987631
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC-----CHHH---H
Q 014640 159 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEV---V 228 (421)
Q Consensus 159 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~-----~~~v---~ 228 (421)
+.++.+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. +..+ +
T Consensus 72 -~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ 150 (293)
T 2j1p_A 72 -SLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAV 150 (293)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHH
Confidence 25789999999999999999998 99999999999999999999999999999999999998753 2334 4
Q ss_pred HHHHHHH--HHHHHHHHHhccccCC--CCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 014640 229 TLLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 304 (421)
Q Consensus 229 ~~ls~~~--~~l~~Gq~~dl~~~~~--~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQ 304 (421)
..+++++ ..+++||.+|+.+..+ ...++++|+.|+++|||+||++||++|++++|++++..+.+++||.++|+|||
T Consensus 151 ~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 230 (293)
T 2j1p_A 151 GELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQ 230 (293)
T ss_dssp HHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555564 5799999999988654 35688999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014640 305 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 384 (421)
Q Consensus 305 I~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 384 (421)
|+||++|+++++ |.|+|+++ |+++|++.+++|.
T Consensus 231 I~DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~~ 263 (293)
T 2j1p_A 231 VVDDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKLN 263 (293)
T ss_dssp HHHHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 999999999875 89999998 5689999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014640 385 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 385 ~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
++|++.|+.|| ++ .++.|.+|++++++|++
T Consensus 264 ~~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 264 TEARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 99999999998 44 57899999999999975
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.4e-57 Score=446.34 Aligned_cols=264 Identities=21% Similarity=0.259 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHhhhc-CchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHH
Q 014640 86 LVADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 164 (421)
Q Consensus 86 ~i~~el~~v~~~l~~~~~~-~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (421)
.+.+-.+.|++.|.+.+.. .+|.+.++++|++. | |||+||.|++++++++|++. +.+..
T Consensus 14 ~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~ 73 (289)
T 2azj_A 14 FWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI-----------------KDSYG 73 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------GGGHH
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------HHHHH
Confidence 3444456677888887765 46789999999998 8 99999999999999998642 14678
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHH
Q 014640 165 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGET 243 (421)
Q Consensus 165 lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~l-a~~~~~~v~~~ls~~~~~l~~Gq~ 243 (421)
+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+ ++.+ +++++.+++++..+++||+
T Consensus 74 ~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~ 152 (289)
T 2azj_A 74 GALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGAL 152 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 8875 5899999999999999999
Q ss_pred HhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCc
Q 014640 244 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323 (421)
Q Consensus 244 ~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~ 323 (421)
+|+.+ +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+
T Consensus 153 ~dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~- 219 (289)
T 2azj_A 153 RDMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE- 219 (289)
T ss_dssp HTTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT-
T ss_pred HHHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh-
Confidence 99975 578999999999999999999999999 99889999999999999999999999999986 565
Q ss_pred ccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC-CCCcch
Q 014640 324 LSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE-NNDEDV 402 (421)
Q Consensus 324 g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~-~~~~~~ 402 (421)
|+++||.|+|+++ +..+ . +.+ .+.++++|.++|.+.|+.||+ ++
T Consensus 220 --dl~~gk~Tlp~l~--~~~g-~--------------~~a------------~~~~a~~~~~~A~~~L~~lp~~~~---- 264 (289)
T 2azj_A 220 --EIDGSAKQLFKYY--REGK-L--------------EEY------------VRSVYLEYKQKYDELISNIPFQSK---- 264 (289)
T ss_dssp --TCCTTGGGGHHHH--TTTC-H--------------HHH------------HHHHHHHHHHHHHHHHHTSCCCGG----
T ss_pred --hhhcCcccHHHHH--HcCC-H--------------HHH------------HHHHHHHHHHHHHHHHHhCCCCcH----
Confidence 8999999999999 2211 0 000 135899999999999999998 66
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 014640 403 TKSRRALLDLTHRVITRN 420 (421)
Q Consensus 403 ~~~r~~L~~l~~~~~~R~ 420 (421)
.++.|.++++++++|.
T Consensus 265 --~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 265 --YLSEIRSLPEFLANGL 280 (289)
T ss_dssp --GHHHHHTHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcc
Confidence 8999999999999984
No 41
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.6e-57 Score=445.86 Aligned_cols=266 Identities=24% Similarity=0.328 Sum_probs=220.3
Q ss_pred HHHHHHHHHhhh---cCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHH
Q 014640 92 SILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 168 (421)
Q Consensus 92 ~~v~~~l~~~~~---~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 168 (421)
+.|++.|.+.+. +.+|.+.++.+|.+..| |||+||.|+++++++++++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 456666766653 35678999999999888 99999999999999997531 1368899999
Q ss_pred HHHHHHHHHhhcCC--CCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHHH
Q 014640 169 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLV 239 (421)
Q Consensus 169 vEliH~AsLIHDDI--iD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~-~----~~v~~~ls~~--~~~l~ 239 (421)
+||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .++++.++++ +..++
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~ 148 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMV 148 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998754 2 3578889998 89999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014640 240 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319 (421)
Q Consensus 240 ~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~ 319 (421)
.||.+|+.+... ..++++|++|+++|||+||++||++||+++|++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 149 ~GQ~lDl~~~~~-~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 227 (291)
T 3npk_A 149 IGQAIDCFFEDK-RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQS 227 (291)
T ss_dssp HHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhccCC-CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 999999988653 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014640 320 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 399 (421)
Q Consensus 320 GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 399 (421)
|||.+.| +||+|||+++++ +.+...++++.++|.+.|+.|+..
T Consensus 228 GK~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~-- 270 (291)
T 3npk_A 228 GKPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK-- 270 (291)
T ss_dssp ------------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH--
T ss_pred CCccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh--
Confidence 9999877 999999999965 455677888899999999999643
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 014640 400 EDVTKSRRALLDLTHRVIT 418 (421)
Q Consensus 400 ~~~~~~r~~L~~l~~~~~~ 418 (421)
..+.|.+|+++.++
T Consensus 271 -----~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 -----LAQMIQNLIIQYLE 284 (291)
T ss_dssp -----HHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHHHh
Confidence 36789999988764
No 42
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=9.7e-58 Score=461.78 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=236.7
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014640 109 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADT 188 (421)
Q Consensus 109 l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~ 188 (421)
+.++.+|.+. | |||+||++++++++++++.... ..+.++.+|+||||||+||||||||||+|++
T Consensus 60 ~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~~ 123 (368)
T 2q58_A 60 YLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGKF 123 (368)
T ss_dssp HHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 6788899884 8 9999999999999999874321 1246788999999999999999999999999
Q ss_pred CCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhccccC--CCCCCHHHH
Q 014640 189 RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDYY 259 (421)
Q Consensus 189 RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-------~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~~Y 259 (421)
|||+||+|.+||+++|||+||+|++.|+..+.++.+ .++++++++++..+++||.+|+.+.. +.+.++++|
T Consensus 124 RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y 203 (368)
T 2q58_A 124 RRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERY 203 (368)
T ss_dssp ETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHH
T ss_pred CCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHH
Confidence 999999999999999999999999999999987653 36889999999999999999997653 345678999
Q ss_pred HHHHhhhhhhH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHH
Q 014640 260 MQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 336 (421)
Q Consensus 260 l~~i~~KTasL-~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPv 336 (421)
++++.+|||.| |++||.+|++++| ++++..+.+++||.++|+||||+||++||++ |||.|+||++||+|||+
T Consensus 204 ~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~ 278 (368)
T 2q58_A 204 FSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPL 278 (368)
T ss_dssp HHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHH
Confidence 99999999999 7999999999998 4667788899999999999999999999985 89999999999999999
Q ss_pred HHHHhhC-chHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH----HH
Q 014640 337 LFAMEEF-PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL----LD 411 (421)
Q Consensus 337 l~Ale~~-~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L----~~ 411 (421)
++|++.. ++.++.+.+.+.... ..+.+++...+..+.+.+.++++.+++.+.|+.+|++. .++.| ..
T Consensus 279 i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~k 350 (368)
T 2q58_A 279 QKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQ 350 (368)
T ss_dssp HSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHH
Confidence 9999985 567777766665332 23444455556667778888899999999999999876 55554 45
Q ss_pred HHHHHHhcc
Q 014640 412 LTHRVITRN 420 (421)
Q Consensus 412 l~~~~~~R~ 420 (421)
+++++++|+
T Consensus 351 I~~~~~~rk 359 (368)
T 2q58_A 351 ISELITNSR 359 (368)
T ss_dssp HHHHHCC--
T ss_pred HHHHHHHhh
Confidence 556666664
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=3.5e-53 Score=412.70 Aligned_cols=223 Identities=29% Similarity=0.380 Sum_probs=196.4
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcC-chHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 158 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~-~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~ 158 (421)
+......+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|+... .
T Consensus 3 ~~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~ 66 (285)
T 4fp4_A 3 MYSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------M 66 (285)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------C
Confidence 55667889999999999999999987 889999999999988 999999999999999986210 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014640 159 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 238 (421)
Q Consensus 159 ~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l 238 (421)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|+..+++.++ ++++.+++++..+
T Consensus 67 ~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~ 145 (285)
T 4fp4_A 67 DPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRL 145 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 137889999999999999999999999999999999999999999999999999999999999864 9999999999999
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 014640 239 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 318 (421)
Q Consensus 239 ~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~ 318 (421)
++||.+|+.+..+. ++++|||+||++||++|++++|++ +..+.+++||+++|+||||+||++||+++++
T Consensus 146 ~~GQ~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~- 214 (285)
T 4fp4_A 146 SVGQALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP- 214 (285)
T ss_dssp HHHHHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-
T ss_pred HHhHHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-
Confidence 99999999875321 999999999999999999999999 8889999999999999999999999999865
Q ss_pred cCCCcccccccC
Q 014640 319 LGKGSLSDIRHG 330 (421)
Q Consensus 319 ~GK~~g~Dl~~G 330 (421)
.||+.|+||+++
T Consensus 215 ~~k~~g~DI~e~ 226 (285)
T 4fp4_A 215 ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccCccHHHHHHH
Confidence 689999999998
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.7e-48 Score=379.27 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHhhhcCchH-HHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHH
Q 014640 87 VADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 165 (421)
Q Consensus 87 i~~el~~v~~~l~~~~~~~~p~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (421)
++.--+.|++.|.+.+....|. +.++.+|++..| |||+||.|++++++++|++.. ++..+
T Consensus 5 ~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~ 65 (274)
T 3kra_B 5 WAAIEADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAA 65 (274)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHH
T ss_pred HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHH
Confidence 4444556788898888877775 999999999988 999999999999999987532 57899
Q ss_pred HHHHHHHHHHHHhhcCCC-CCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHH---HHHH
Q 014640 166 AEITEMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LATV 234 (421)
Q Consensus 166 A~avEliH~AsLIHDDIi-D~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~-------~v~~~---ls~~ 234 (421)
|+++||||+||||||||+ |++++|||+||+|.+||+++|||+||||+++||..+++..++ .+++. ++++
T Consensus 66 A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a 145 (274)
T 3kra_B 66 AAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRA 145 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHH
Confidence 999999999999999998 776789999999999999999999999999999999987643 33444 4555
Q ss_pred H--HHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcc
Q 014640 235 V--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 309 (421)
Q Consensus 235 ~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDl 309 (421)
+ ..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||.
T Consensus 146 ~G~~~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 146 GGPEGMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TSTTTHHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 6799999999998765 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=4.3e-47 Score=369.42 Aligned_cols=202 Identities=13% Similarity=0.145 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCchH-HHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHH
Q 014640 86 LVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 164 (421)
Q Consensus 86 ~i~~el~~v~~~l~~~~~~~~p~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (421)
.++.--+.|++.|.+.+....|. +.++++|++..| |||+||+|++++++++|++.. ++..
T Consensus 9 ~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~ 69 (273)
T 3qkc_B 9 YRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMA 69 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHH
Confidence 34444455788888888777674 999999999988 999999999999999987532 5789
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC------HHHHHH---HHHHH
Q 014640 165 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTL---LATVV 235 (421)
Q Consensus 165 lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~------~~v~~~---ls~~~ 235 (421)
+|+++||||+||||||||+|+|+ |||+||+|.+||+++|||+||||+++||..+++..+ ..+++. +++++
T Consensus 70 ~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~ 148 (273)
T 3qkc_B 70 AAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVM 148 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 999999999999999999999999999999987543 344444 44454
Q ss_pred --HHHHHHHHHhccccCCCCCCHHHHHH-HHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccc
Q 014640 236 --EHLVTGETMQMTTSSDQRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 310 (421)
Q Consensus 236 --~~l~~Gq~~dl~~~~~~~~s~~~Yl~-~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDll 310 (421)
..++.||.+|+.+.. ..+. +|++ ++++|||+||++||++||+++|++++..+.+++||.++|+||||+||++
T Consensus 149 g~~~~~~GQ~lDl~~~~--~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 149 GSEGIVEGQYHELGLNQ--LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp TTTTHHHHHHHHTTCCS--SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHhcCC--CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999998842 3455 5554 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.67 E-value=0.098 Score=50.47 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 014640 235 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314 (421)
Q Consensus 235 ~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~ 314 (421)
+..+.+|..+|+... ...|++++..-+++-.|+...+.+. +++..+++ ...++.++|+|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 567889999998764 2468888888777665555544443 34444544 345678999999999988887
Q ss_pred cccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014640 315 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394 (421)
Q Consensus 315 ~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 394 (421)
+.|+..|++-+|.-..-+.+-...++.... ..+.+..++ +.-...|+.|.++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~--~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIRARR--ATDGVRRCI---------ALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTC--CCHHHHHHH---------HHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHhcCC--CCHHHHHHH---------HHHHHHHHHHHHHHHHHHHhC
Confidence 457788999888765433322222232211 122222222 334467888889999888888
Q ss_pred CCC
Q 014640 395 PEN 397 (421)
Q Consensus 395 p~~ 397 (421)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=95.13 E-value=0.21 Score=48.04 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 014640 234 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 313 (421)
Q Consensus 234 ~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~ 313 (421)
.+..+.+|..+|+... .-.|++++..-+++-.|+...+.+.+ ++..+.+ .....+.++|.|+|+.|=+.|+
T Consensus 109 ~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~~---~~~~~A~~lG~AlQltNilRDv- 179 (293)
T 3acx_A 109 SFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHETH---QTYDVARRLGESLQLINILRDV- 179 (293)
T ss_dssp HHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCCH---HHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCcH---HHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566778888888653 24588888888888777766665543 3333312 2457899999999999988777
Q ss_pred ccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014640 314 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393 (421)
Q Consensus 314 ~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 393 (421)
+.|+..|++-+|.=..-+..-...++.... .+ ..+..+ +..-...|+.|..+|...+..
T Consensus 180 ----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~-~~~~~~---------~~~l~~~A~~~~~~a~~~~~~ 238 (293)
T 3acx_A 180 ----------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VN-NHYIDL---------WEYYAAIAEKDFRDVMDQIKV 238 (293)
T ss_dssp ----------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CC-HHHHHH---------HHHHHHHHHHHHHHHHHTGGG
T ss_pred ----------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CC-HHHHHH---------HHHHHHHHHHHHHHHHHhHHh
Confidence 457788999999854333322222233221 11 222222 234457889999999999999
Q ss_pred CCCCC
Q 014640 394 LPENN 398 (421)
Q Consensus 394 lp~~~ 398 (421)
+|...
T Consensus 239 lp~~~ 243 (293)
T 3acx_A 239 FSIEA 243 (293)
T ss_dssp SCTTH
T ss_pred CCHHH
Confidence 98753
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.54 E-value=0.39 Score=47.41 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhh
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 306 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~ 306 (421)
+.+++.+.+..+..|-.+++.. .-.|++++..-+++-.|+...+.+.+-..-...++. .......+.++|.|||+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 4456667777888888888852 346889998888887777777766665443222332 334567899999999999
Q ss_pred hccccccccccccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014640 307 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 386 (421)
Q Consensus 307 DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 386 (421)
|=+.|+ +.|+..|++-+|.=..-+..-...++. .+..-..+... +..-...|+.|..+
T Consensus 188 NilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~~------l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQC------LNELITNALHHIPD 245 (343)
T ss_dssp HHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHHH------HHHHHHHHHTTHHH
T ss_pred HHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHHH------HHHHHHHHHHHHHH
Confidence 988887 457788888888754322211101111 11122222222 34445778888888
Q ss_pred HHHHhccCCCC
Q 014640 387 AAAAIDSLPEN 397 (421)
Q Consensus 387 A~~~L~~lp~~ 397 (421)
|...+..+|+.
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888888765
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=78.93 E-value=2.9 Score=35.63 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccc
Q 014640 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 248 (421)
Q Consensus 204 Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 248 (421)
-||+|||+=++-+.+|+.......+..|++++..+.+.-..-+.-
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~~ 116 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRATI 116 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 459999999999999999888999999999999998887666543
No 50
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=77.01 E-value=58 Score=31.87 Aligned_cols=92 Identities=7% Similarity=-0.081 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHHH-HHHHHHHcCCCHHHHH--HHHHHHHH
Q 014640 223 KNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLAGQTAEVAI--LAFDYGKN 298 (421)
Q Consensus 223 ~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~a-~~~ga~lag~~~~~~~--~l~~~G~~ 298 (421)
..+.....+.+.+..++.+-..+..+.. ...+|.++|+++-..-+|..+..+ +..+ +--..++++.+ .+.++-+.
T Consensus 174 ~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~-~g~~l~~~~~~~p~~~~l~~~ 252 (382)
T 3kb9_A 174 LPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS-SGCELPDAVRKHPAYRRAALL 252 (382)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH-HTCCCCHHHHTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH-cCCCCCHHHHhChHHHHHHHH
Confidence 3566778888999999999988877643 235899999998555555433222 2222 11123444332 45667788
Q ss_pred HHHHhhhhhcccccccc
Q 014640 299 LGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 299 lG~AfQI~DDllD~~~~ 315 (421)
.+...-+.||+..|..+
T Consensus 253 ~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 253 SQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999999644
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=74.51 E-value=33 Score=34.57 Aligned_cols=97 Identities=8% Similarity=-0.069 Sum_probs=61.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHc-CCCHHHHH--HH
Q 014640 217 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-GQTAEVAI--LA 292 (421)
Q Consensus 217 ~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~la-g~~~~~~~--~l 292 (421)
..+.....+.....+.+.+..++.+-+.+..+.. ....|.++|+++ +..||.....++ +...++ ..++++.+ .+
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~ 323 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDM 323 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchH
Confidence 3333334566778888888888888888876643 335799999996 445554322211 111122 22444433 45
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 014640 293 FDYGKNLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 293 ~~~G~~lG~AfQI~DDllD~~~~ 315 (421)
.++-+..+...-+.||+..|..+
T Consensus 324 ~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 324 QRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHH
Confidence 66778888999999999999644
No 52
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=61.09 E-value=1.1e+02 Score=28.81 Aligned_cols=98 Identities=9% Similarity=-0.088 Sum_probs=60.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCCC-CC-CHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHH--HHH
Q 014640 218 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LAF 293 (421)
Q Consensus 218 ~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~-s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~--~l~ 293 (421)
.+.....+.....+.+.+..++.+-..+..+.... .+ |.++|+++-..-.|..+..++..-++--..++++.+ .+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~ 205 (337)
T 1ps1_A 126 RTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMS 205 (337)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHH
Confidence 33444456777888899999999998887765433 46 899999875554444433222211111123444332 455
Q ss_pred HHHHHHHHHhhhhhcccccccc
Q 014640 294 DYGKNLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 294 ~~G~~lG~AfQI~DDllD~~~~ 315 (421)
++-...+...-+.||+..|..+
T Consensus 206 ~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 206 AMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 6778889999999999999644
No 53
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=56.52 E-value=1.3e+02 Score=31.41 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHc-C--CCHHHHHHH---HHHHH
Q 014640 225 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEVAILA---FDYGK 297 (421)
Q Consensus 225 ~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~la-g--~~~~~~~~l---~~~G~ 297 (421)
..++..+-++...++.+-+.+..|.. ...+|.++|++.-.--+|..+... .+.++ | .+.+..+.+ .++-+
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~---~~~~~mg~~lt~e~~e~~~~~p~i~~ 441 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI---TSFVGMGDIVTPETFKWAASDPKIIQ 441 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH---HHHHTSCTTSCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH---HHHHhcCCCCCHHHHHhccccHHHHH
Confidence 35778888889999999988888743 336899999997665555443221 11222 3 456665553 36788
Q ss_pred HHHHHhhhhhcccccccc
Q 014640 298 NLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 298 ~lG~AfQI~DDllD~~~~ 315 (421)
..+...-+.||+..|..+
T Consensus 442 ~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 442 ASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcccchhhhh
Confidence 899999999999998644
No 54
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=49.63 E-value=1.2e+02 Score=31.58 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAILA---FDYGKNLG 300 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~-a~~~ga~lag-~~~~~~~~l---~~~G~~lG 300 (421)
++..+.++...++.+-+.+..|.. ...+|.++|++.-.--+|.-+.. .+.++ ++. .+.+..+.+ -++-+..+
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFA--VVQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHH--HCSSCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHh--cCCCCCHHHHHhcccchHHHHHHH
Confidence 556677788888888888877743 34689999999866555543222 12221 132 456655543 36778888
Q ss_pred HHhhhhhcccccccc
Q 014640 301 LAYQLIDDVLDFTGT 315 (421)
Q Consensus 301 ~AfQI~DDllD~~~~ 315 (421)
...-+.||+..|..+
T Consensus 443 ~i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 443 HIFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhh
Confidence 999999999998643
No 55
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=49.53 E-value=1.4e+02 Score=28.15 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=31.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 282 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 282 ag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
.|.+.+.+..+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIY 84 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhcc
Confidence 3455554555566667777888999999762 46788888876555
No 56
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=46.50 E-value=1.6e+02 Score=30.48 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHH
Q 014640 225 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDYGKN 298 (421)
Q Consensus 225 ~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~la-g-~~~~~~~~l---~~~G~~ 298 (421)
..++..+.++...++.+-+.+..|.. ...+|.++|++.-.--+|..+-.+.. .++ . .+.+..+.+ -++-+.
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 35677788888999999988887743 33689999999866655544222211 233 2 456655543 367788
Q ss_pred HHHHhhhhhcccccccc
Q 014640 299 LGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 299 lG~AfQI~DDllD~~~~ 315 (421)
.+...-+.||+..|..+
T Consensus 438 ~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 438 SVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHSHHHH
T ss_pred HhhhheeeccchhHHHH
Confidence 89999999999998543
No 57
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=44.95 E-value=96 Score=29.92 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHHH
Q 014640 283 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 339 (421)
Q Consensus 283 g~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~A 339 (421)
|.+.+....+...-+-+=.++-|.||+.|= +|+|.|++|+-..|-
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 444444444555667788899999999763 467889999877664
No 58
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=44.54 E-value=1.4e+02 Score=28.96 Aligned_cols=52 Identities=31% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 275 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 275 ~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
|.+++.+.|.+.+....+...-+-+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 33344444444444445556667788899999999763 45788888876554
No 59
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=42.84 E-value=2e+02 Score=26.35 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 014640 252 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 252 ~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~ 315 (421)
..+|.++|+.+-..-+|..+...+..-++=-..+++..+.+..+-+..+...-+.||+..|..+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3579999999766555544333222222222346777777888999999999999999999654
No 60
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=42.51 E-value=30 Score=33.19 Aligned_cols=81 Identities=26% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-HHHH
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVV 228 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-~~v~ 228 (421)
...+...-+.|=.|+=|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++. .+.+
T Consensus 205 ~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L 284 (304)
T 3lsn_A 205 LKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPL 284 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 34556666777889999999987 5688999999999999999999999999999999988763 2333
Q ss_pred HHHHH-HHHHHHHHH
Q 014640 229 TLLAT-VVEHLVTGE 242 (421)
Q Consensus 229 ~~ls~-~~~~l~~Gq 242 (421)
..+++ .+.+..+|.
T Consensus 285 ~~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 285 RELARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHhccccc
Confidence 33333 344455553
No 61
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=41.62 E-value=1.1e+02 Score=28.92 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 285 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 285 ~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
+.+.+..+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 3343444555667788899999999652 46788888876666
No 62
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=41.52 E-value=46 Score=32.21 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 223 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~ 223 (421)
...+...-+.|=.|+=|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 233 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 233 IKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666777889999999976 346778888988889999888888888999998888876
No 63
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=39.01 E-value=96 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.029 Sum_probs=34.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 276 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 276 ~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 3444444555554445555667778899999999773 45788888876655
No 64
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=38.68 E-value=55 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 223 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~ 223 (421)
...+...-+.|=.|+=|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 204 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 204 LAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566666777889999999977 356788899999999999888888888999988888775
No 65
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=38.60 E-value=2.4e+02 Score=26.11 Aligned_cols=64 Identities=5% Similarity=0.054 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 014640 252 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 252 ~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~ 315 (421)
..+|.++|+.+-..-+|..+..+...-++=-..+++..+....+-...+...-+.||+..|..+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3579999998876666654333222222212346777777888999999999999999999644
No 66
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=36.87 E-value=94 Score=29.53 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC
Q 014640 164 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 223 (421)
Q Consensus 164 ~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~ 223 (421)
.+...-+.|=.|+=|.||+.| .++.+.|++|+=..+|...|--...-++..|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455566677788999999988 346788889999999999998888999999998888775
No 67
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=36.17 E-value=2.2e+02 Score=26.66 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=31.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccCCCcccccccCcccHHHHH
Q 014640 282 AGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 282 ag~~~~~~~~l~~~G~~lG~AfQI~DDl--lD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
.|.+++.+..+...-+-|=.+.-|.||+ .|= +|+|.|++|+=..|
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 61 LGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 3555554444555666777788899999 873 46788888877666
No 68
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=34.70 E-value=1.1e+02 Score=30.05 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=24.8
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 277 AIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 277 ~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
+++.+.| .+.+.+..+...-+-|=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 3344445 44444444555667778899999999762 45778888776655
No 69
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=32.72 E-value=82 Score=30.38 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~ 224 (421)
...+...-+.|=.|+=|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++.
T Consensus 211 ~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 211 FDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33556666777789999999977 3467889999999999999998889999999988888764
No 70
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=32.34 E-value=56 Score=31.24 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 222 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~ 222 (421)
...+...-+.|=.|+=|.||+.| .++.+.|++|+=..+|...|--.-.-+...|...|..+
T Consensus 208 ~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 208 IGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666777789999999977 24667788888888888888877777788887777665
No 71
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=31.47 E-value=4.4e+02 Score=27.00 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-CCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 301 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG~ 301 (421)
++..+.++...++.+-+.+..+.... .+|.++|++.-..-+|...-.. ..-..++. .+.+..+.+ -++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~-~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLT-HIFFRVTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH-HHHHHHSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH-HHHHHcCCCCCHHHHHHhcccHHHHHHHHH
Confidence 56667778888888888777664433 5799999987554444332222 11112232 455544432 356777788
Q ss_pred Hhhhhhcccccccc
Q 014640 302 AYQLIDDVLDFTGT 315 (421)
Q Consensus 302 AfQI~DDllD~~~~ 315 (421)
..-+.||+..|..+
T Consensus 435 i~RL~NDi~S~~~E 448 (543)
T 2ong_A 435 VLRLADDLGTSVEE 448 (543)
T ss_dssp HHHHHHHHHSSHHH
T ss_pred HHHHhcccchhhhc
Confidence 88899999988543
No 72
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=31.16 E-value=1.4e+02 Score=28.59 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=31.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 277 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 277 ~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
+++.+.|.+.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 54 LSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 334443444343344555666677788999999772 45788888865544
No 73
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=30.91 E-value=52 Score=31.34 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 223 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~ 223 (421)
...+...-+.+=.|+=|.||+.| .++.+.|++|+=..+|...|.-..+-+..+|...|..++
T Consensus 200 ~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 200 KEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666677789999999987 467788888888888888888888888888888888774
No 74
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=30.22 E-value=64 Score=30.95 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC-HHHH
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVV 228 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~-~~v~ 228 (421)
...+...-+.|=.|+=|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++. .+.+
T Consensus 212 ~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L 291 (313)
T 3lom_A 212 KSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAAL 291 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 33556666777789999999977 3467889999999999999999899999999888887753 3334
Q ss_pred HHHHH
Q 014640 229 TLLAT 233 (421)
Q Consensus 229 ~~ls~ 233 (421)
..+++
T Consensus 292 ~~la~ 296 (313)
T 3lom_A 292 IELTK 296 (313)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 75
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=29.55 E-value=1.7e+02 Score=27.61 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 287 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 287 ~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
+....+...-+-+=.+.=|.||+.| .+|+|.|++|+-..|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhc
Confidence 3333445555667778889999977 246788888876655
No 76
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=29.13 E-value=64 Score=31.28 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCC
Q 014640 162 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 223 (421)
Q Consensus 162 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~ 223 (421)
...+...-+.+=.|+=|.|||.| .++.+.|++|+=..+|...+.-..+-+..+|...|..++
T Consensus 244 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34556666777889999999977 246677888888888888887777888888887777664
No 77
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=28.13 E-value=74 Score=30.32 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCC
Q 014640 163 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224 (421)
Q Consensus 163 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~ 224 (421)
..+...-+.+=.|+=|.||+.| .++.+.|++|+=..+|...|--..+-+..+|...|..++.
T Consensus 212 ~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 212 PHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455566677788999999977 3466788888888899888888888889999888888763
No 78
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=27.59 E-value=1.9e+02 Score=27.74 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHcC-CCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 280 LLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 280 ~lag-~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
.+++ .+.+.+..+...-+-|=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 68 ~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 68 TFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTY 115 (334)
T ss_dssp TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHc
Confidence 3444 46665555666677788899999999762 46788898876655
No 79
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=26.48 E-value=1.9e+02 Score=29.96 Aligned_cols=88 Identities=17% Similarity=0.010 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCC-CCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcC-CCHHH-HHH---HHHHHHHHH
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEV-AIL---AFDYGKNLG 300 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag-~~~~~-~~~---l~~~G~~lG 300 (421)
++..+.++...++.+-+.+..+... ..+|.++|++.-..-+|..... +..-..++. .+.+. .+. .-++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII-SPTYFTFANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH-HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH-HHHHHHcCCCCcHHHHHhhhcccHHHHHHHH
Confidence 4566677777888887777666432 2579999999755444432221 111111122 24444 333 346777888
Q ss_pred HHhhhhhcccccccc
Q 014640 301 LAYQLIDDVLDFTGT 315 (421)
Q Consensus 301 ~AfQI~DDllD~~~~ 315 (421)
+..-+.||+..|..+
T Consensus 441 ~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 441 IILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHhcccchhhhh
Confidence 999999999988644
No 80
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=25.23 E-value=2.1e+02 Score=27.75 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 285 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 285 ~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
+.+.+..+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 3333334455567788899999999662 46788988876665
No 81
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=24.95 E-value=1.8e+02 Score=31.82 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhHH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 297 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL~--~~a~~~ga~lag-~~~~~~~~l~-----~~G~ 297 (421)
++..+-++...++.+-+.+..+.. ...+|.++|++.-.--+|.-. ...+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 456677778888888887776633 335899999997655444422 2222222 222 3566655554 6778
Q ss_pred HHHHHhhhhhcccccccc
Q 014640 298 NLGLAYQLIDDVLDFTGT 315 (421)
Q Consensus 298 ~lG~AfQI~DDllD~~~~ 315 (421)
..+...-+.||+..|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888899999999998643
No 82
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=24.23 E-value=3.7e+02 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=30.4
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHH
Q 014640 281 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 338 (421)
Q Consensus 281 lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~ 338 (421)
..|.+.+.+..+...-+-+=.|.=|.||+.|= +|+|.|++|+-..|
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 33455554444555666677788899999762 46788888865544
No 83
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=23.44 E-value=2.4e+02 Score=30.52 Aligned_cols=87 Identities=7% Similarity=0.017 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHhhhhhhH-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 014640 227 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 300 (421)
Q Consensus 227 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG 300 (421)
++..+.++...++.+-+.+..+.. ...+|.++|++...--+|.- +...+..+ ++. .+.+..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 556677788888888887776633 33589999999766555543 22222222 222 345554444 46778888
Q ss_pred HHhhhhhcccccccc
Q 014640 301 LAYQLIDDVLDFTGT 315 (421)
Q Consensus 301 ~AfQI~DDllD~~~~ 315 (421)
...-+.||+..|..+
T Consensus 645 ~I~RL~NDi~S~k~E 659 (764)
T 3p5p_A 645 LSWRLTNDTKTYQAE 659 (764)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHHH
Confidence 899999999998643
No 84
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=21.15 E-value=2e+02 Score=27.84 Aligned_cols=37 Identities=30% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014640 275 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 311 (421)
Q Consensus 275 ~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD 311 (421)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.|
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 3344444454444444455666778889999999977
No 85
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=20.75 E-value=2.5e+02 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=30.8
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHHH
Q 014640 281 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 339 (421)
Q Consensus 281 lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~A 339 (421)
+.|.+++....+...-+-|=.++-|.||+.| .+|+|.|++|+-..|-
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G 106 (342)
T 1wy0_A 60 AVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWG 106 (342)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccC
Confidence 3344444334455556667778899999977 2467888888766553
No 86
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.05 E-value=1.4e+02 Score=28.50 Aligned_cols=60 Identities=20% Similarity=0.121 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcC
Q 014640 163 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 222 (421)
Q Consensus 163 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~ 222 (421)
..+...-+.|=.|+=|.||+.| .++.+.|++|+=..+|...|--.-.-++..|...|..+
T Consensus 208 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 208 PAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3455666677778999999977 35778888898888888888877777888887777763
Done!