RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014640
(421 letters)
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 456 bits (1175), Expect = e-161
Identities = 277/347 (79%), Positives = 318/347 (91%)
Query: 75 SVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM 134
S++EE+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLM
Sbjct: 2 SLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLM 61
Query: 135 ATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGS 194
ATAL+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GS
Sbjct: 62 ATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGS 121
Query: 195 LNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC 254
LN VMGNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT VEHLVTGETM++T+S++QR
Sbjct: 122 LNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRY 181
Query: 255 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314
SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTG
Sbjct: 182 SMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTG 241
Query: 315 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 374
TSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ
Sbjct: 242 TSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQ 301
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
+ RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 302 RARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, PR structure
initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus
brevis} PDB: 3n3d_A
Length = 334
Score = 298 bits (764), Expect = 5e-99
Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 27/354 (7%)
Query: 70 HHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPT 129
HH S+ + F V +L+ L L V + + K G GK RP
Sbjct: 4 HHHHHSLDRQLWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPG 61
Query: 130 VLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTR 189
L +T N P L A E++HV +L+HDDV+DD+ TR
Sbjct: 62 YFYLFSTFGNAATPAQLQA----------------GAAAIEILHVGTLIHDDVIDDSPTR 105
Query: 190 RGIGSLNFVMGNKLAVLAGDFLLSRA-CVALASLKNTEVVTLLATVVEHLVTGETMQMTT 248
RG+ ++ G + A+ AGDF+ + L S + ++ + ++ GE QM
Sbjct: 106 RGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDL 165
Query: 249 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDD 308
+ + ++D Y+ + KTA L + SC A LAG V D G +G AYQ++DD
Sbjct: 166 NYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDD 225
Query: 309 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP--QLRTVVEQGFEDSSNVDIALEY 366
+LD+ G K L D+R G+ + P+L ++ P + + ++ ++
Sbjct: 226 ILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQAL 285
Query: 367 LGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
+ + G+ ++LA + + A I LP ++++L LT ++ R+
Sbjct: 286 VAQYDGVGAAKQLAQDYTDRALTLIQQLPVG------SAQQSLEQLTRLLLRRD 333
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Length = 325
Score = 285 bits (732), Expect = 2e-94
Identities = 90/346 (26%), Positives = 160/346 (46%), Gaps = 31/346 (8%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 140
L + + + + KRL + ++ + AA + G GKR RP +LL +
Sbjct: 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDT 61
Query: 141 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 200
+ + + A E++H+ASL+HDD +D++D RRG S++
Sbjct: 62 QKDDLIR-----------------TAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFD 104
Query: 201 NKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 260
A+ G FLL+RA +A++ N++ + + + + GE QM + S Y+
Sbjct: 105 KDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYL 164
Query: 261 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320
++ KTA LI SC AL + + +G +G++YQ+IDD+LD+T A+LG
Sbjct: 165 RRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224
Query: 321 KGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSS-NVDIALEYLGKSRGIQ 374
K SDIR+G IT P++ A+ ++ +L VV+ S V + K GI+
Sbjct: 225 KPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIE 284
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
L+ K+ + A + L ++ + L ++ +++ R
Sbjct: 285 PAELLSRKYGDKAKYHLSQLQDS------NIKDYLEEIHEKMLKRV 324
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein
structure initiative, isoprene biosynthesis,
transferase; 2.30A {Bacteroides thetaiotaomicron}
Length = 334
Score = 282 bits (723), Expect = 7e-93
Identities = 89/343 (25%), Positives = 154/343 (44%), Gaps = 31/343 (9%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+ + EL + + L S + K GK RP ++LL+A P
Sbjct: 10 KTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVTP 67
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
LH A E++H ASL+HDDV+D++ RRG S+N + NK+
Sbjct: 68 ATLH-----------------AAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKV 110
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
+VLAGD+LL+ + V N E++ L++++ + L GE +Q++ S+ S + Y
Sbjct: 111 SVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVI 170
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KTA+L + +A AL E A G+ +G+ +Q+ DD+ D+ S +GK +
Sbjct: 171 RKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFD-SKKIGKPT 229
Query: 324 LSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 378
+D+ G +T P L+A+ Q+ V++G + +E+ + GI+
Sbjct: 230 GNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACR 289
Query: 379 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
++ A + +LP++ AL V+ R K
Sbjct: 290 TIEQYKKKAFDLLAALPDS------NICLALRTYLDYVVAREK 326
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI,
protein structure initiative; HET: IPE; 2.00A
{Caulobacter crescentus}
Length = 345
Score = 281 bits (721), Expect = 2e-92
Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 30/341 (8%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
L +++ + + + + ++V + + AE+ G GKR RP + + A
Sbjct: 28 VRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND 85
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
+A E IH A+LLHDDV+D + RRG + + + G
Sbjct: 86 HFQK-----------------LAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQ 128
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
+VL GDFL +RA + + + + +LA + GE +Q+ S D S Y++
Sbjct: 129 SVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEII 188
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KTA L + + +A A+ AG + DYG NLGLA+QL DD LD+ G + +LGK +
Sbjct: 189 QAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNA 248
Query: 324 LSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 378
D R G T P+L A+ E + + + ++ A E + S + T +
Sbjct: 249 GDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLD 308
Query: 379 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
LA +A+ A AA+ P N R AL +L ++R
Sbjct: 309 LAADYADKAKAALAMFPAN------DWREALEELADFAVSR 343
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate
synthase, structural genomics, PSI, protein structure
initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
PDB: 3q2q_A*
Length = 360
Score = 271 bits (696), Expect = 2e-88
Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 30/340 (8%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+ + D + + + L + + + L + + G GKRFRP LL + +
Sbjct: 37 TARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS 94
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
E + A + E+ H+A+L HDDV+D+A RRG+ S N N +
Sbjct: 95 ENVIKA----------------AVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSV 138
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
A+LAGD LL+ A ++ L + V A LVTG+ + D +++Y
Sbjct: 139 AILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDTD-PIEHYTNVI 196
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KT LI+++ A+ AG E ++G +G+ +Q++DD++D + GK
Sbjct: 197 REKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTP 256
Query: 324 LSDIRHGIITAPILFAM----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTREL 379
+D+R G+ T P+L+A+ +LR ++ ED V+ LE L +S G Q +
Sbjct: 257 GTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDE 316
Query: 380 AVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
++ ++A A +D LP++ + AL +L + R
Sbjct: 317 VYRYMDIANAELDRLPDS------TVKEALRNLATFTVKR 350
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 268 bits (687), Expect = 2e-87
Identities = 95/344 (27%), Positives = 170/344 (49%), Gaps = 31/344 (9%)
Query: 84 FSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 142
+A++++ + +R + +E P++ + + G GKR RP + L A +
Sbjct: 15 AQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGG 72
Query: 143 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 202
P +H +A E IH A+LLHDDV+D++ RRG + N + NK
Sbjct: 73 PFHVH-----------------LAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNK 115
Query: 203 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 262
+VL GD+L +R+ + N V+ +LA + GE +Q+T + + + D Y++
Sbjct: 116 SSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRV 175
Query: 263 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 322
KTA+L S + + ++ G + FDYG LG+A+Q++DD+LD+ G SA +GK
Sbjct: 176 IRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKN 235
Query: 323 SLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 377
+ D R +T P++ A+ E + V+E+G + +++ A+ + K ++ TR
Sbjct: 236 TGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATR 295
Query: 378 ELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
A+ + A A+ LP++ R+ L DL V+ R +
Sbjct: 296 LAAIGWTDTARKALAKLPDH------PLRQMLDDLADYVVERVR 333
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 250 bits (640), Expect = 1e-80
Identities = 84/341 (24%), Positives = 137/341 (40%), Gaps = 41/341 (12%)
Query: 86 LVADELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPE 144
+ +L + ++ S + E + R + + LL + + +
Sbjct: 1 MQEKQLKAIQNKIASWIKEIESGFIDELFSKIGPSK--MLRSKLMLALLNEKTDAILLDK 58
Query: 145 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLA 204
L+ + I EMI ASLLHDDV+D A RR + S+N + GN A
Sbjct: 59 ALN-----------------LCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNA 101
Query: 205 VLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTY 264
V+ GD S+A L+ + + L+ V L GE + Y +
Sbjct: 102 VMLGDVFYSKAFFELSKMGE-LIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILE 160
Query: 265 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSL 324
KTA I S K++A+L + A++ D+G N G+A+Q+IDD+LD T + +LGK +
Sbjct: 161 DKTAHFIEASLKSMAILLNKDAKI---YADFGLNFGMAFQIIDDLLDITQDAKTLGKPNF 217
Query: 325 SDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTREL 379
SD + G T P L + L + +Q ++ E + I++T +
Sbjct: 218 SDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD--SHEIIEWTKEKFKQYGIIEETLKT 275
Query: 380 AVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
A ++ A AI L L VI+R
Sbjct: 276 AQVYSKKALEAIKGEN----------NLILEKLAQDVISRT 306
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase,
thermophilic; 2.28A {Thermotoga maritima} SCOP:
a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A
1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A
1vg7_A
Length = 299
Score = 246 bits (630), Expect = 2e-79
Identities = 70/316 (22%), Positives = 136/316 (43%), Gaps = 31/316 (9%)
Query: 81 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 140
+ + + EL + +R+ ++ P+ + GK R + +L V
Sbjct: 3 KNKLNQNSYELEKVKERIEQILSQFFPEQI---MKDLPLY--GKMLRVRLSILSFKNRGV 57
Query: 141 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMG 200
+ E E++H+ASLLHDDV+D A RRG ++NF+ G
Sbjct: 58 EIGEDAIS----------------SLAALELVHLASLLHDDVIDGARFRRGKETINFMYG 101
Query: 201 NKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 260
+K AV AGD +L A + + N ++ V+ + E ++ + + + Y+
Sbjct: 102 DKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEYL 160
Query: 261 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 320
+ K+ +L + + ALL G+ E ++ G +G YQ+ DD++DF G +G
Sbjct: 161 RIVEGKSGALFGLALQLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGM-EKIG 216
Query: 321 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 380
K D+++G+ + P++ AME+FP+ R + E + + ++ + +++ E
Sbjct: 217 KDGFLDLKNGVASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMREKGILKECEETL 271
Query: 381 VKHANLAAAAIDSLPE 396
L +
Sbjct: 272 KVLVKNVIIENSWLRD 287
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural GENO structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 237 bits (607), Expect = 6e-76
Identities = 65/329 (19%), Positives = 118/329 (35%), Gaps = 34/329 (10%)
Query: 98 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 157
+ L +Y ++ GK+ R + L V PE
Sbjct: 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKV--PEDKLQ--------- 48
Query: 158 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACV 217
I E+TEM+H ASLL DD+ D++ RRG + + G + + +++
Sbjct: 49 ------IIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 102
Query: 218 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC-SMDYYMQKTYYKTASLISNSCK 276
+ +L + + V L + L G+ + + + C + + Y KT L +
Sbjct: 103 KVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVG 162
Query: 277 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 336
+ L + ++ LGL +Q+ DD + S K D+ G + P
Sbjct: 163 LMQLFSDYKEDLK----PLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218
Query: 337 LFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393
+ A+ P Q++ ++ Q E+ + YL + TR + A ID+
Sbjct: 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDA 278
Query: 394 LPENNDEDVTKSRRALLD-LTHRVITRNK 421
N AL+ L+ N+
Sbjct: 279 RGGN------PELVALVKHLSKMFKEENE 301
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 232 bits (593), Expect = 3e-73
Identities = 87/359 (24%), Positives = 150/359 (41%), Gaps = 47/359 (13%)
Query: 84 FSLVADELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 142
F+ + ++ ++ +++ + + L AA ++ G GKR RP V+L A+
Sbjct: 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP 65
Query: 143 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 202
++ A E+IH SL+HDD++D +TRRG +++ + G
Sbjct: 66 LRAIY-----------------PAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVN 108
Query: 203 LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD 257
+A+LAGD L S+A A+A K V+ ++ L G+ + +++
Sbjct: 109 MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIE 168
Query: 258 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 317
YM+ KT +L S K ++ E +G+N+G+A+Q+ DDVLD
Sbjct: 169 EYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEK 228
Query: 318 SLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGFEDSS-----------NVD 361
LGK SDIR G T + E + + + + D +V
Sbjct: 229 KLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVM 288
Query: 362 IALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
A++ L K I E+A A A+ LP++ K+R L L ++ R
Sbjct: 289 EAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKS------KARMDLELLAKFIVERE 341
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 227 bits (580), Expect = 5e-72
Identities = 74/332 (22%), Positives = 127/332 (38%), Gaps = 59/332 (17%)
Query: 89 DELSILAKRLRS-MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 147
+E + ++ + + E P L E+ G GKR RP +LLL++ + L+
Sbjct: 9 EEYRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYSRSLN 66
Query: 148 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLA 207
A EM+H ASL+HDD+LD RR + S G A+L
Sbjct: 67 -----------------AALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLC 109
Query: 208 GDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKT 267
GD+L++++ ++ +V+ + GE + + D+ + Y + Y KT
Sbjct: 110 GDYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDL-KLEDESFGENDYFKCIYKKT 167
Query: 268 ASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 327
ASL + S A G E+A +G LG AYQ++DD+L+F GK +
Sbjct: 168 ASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ES 221
Query: 328 RHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 387
+ T P ++ K ++K+ + H A
Sbjct: 222 KFTSETLPHIYMKST-------------------------SKEEALKKSIDCVKLHVAAA 256
Query: 388 AAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
+++ E +R L +T +
Sbjct: 257 KETLETFREC------PARDKLFQITDYITVD 282
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 224 bits (572), Expect = 5e-70
Identities = 71/349 (20%), Positives = 132/349 (37%), Gaps = 38/349 (10%)
Query: 87 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPL 146
+ + LA + ++ + + G GK RP + +L A
Sbjct: 20 LRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTG------- 70
Query: 147 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVL 206
E + A E++H SLLHDD++D + RR ++ V G A+L
Sbjct: 71 -AAPEVGVPG---------AVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAIL 120
Query: 207 AGDFLLSRAC---VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
GD L + A + L +++ L L+ G+ ++ R S++ ++
Sbjct: 121 VGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEME 180
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 323
KT +L++ + A+L G A YG +LGLA+Q +DD+L G + GK +
Sbjct: 181 GNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQT 240
Query: 324 LSDIRHGIITAPILFAME-----------EFPQLRTVVEQGFEDSSNVDIALEYLGKSRG 372
SD+R + P++ A+ + + ++ G
Sbjct: 241 WSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGG 300
Query: 373 IQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
+ T + A + +A A+D++ + R L V+ R +
Sbjct: 301 REWTADEARRQHTIAIEALDAVDMPDR-----VRDRFTALADFVVVRKR 344
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 224 bits (572), Expect = 6e-70
Identities = 78/356 (21%), Positives = 141/356 (39%), Gaps = 48/356 (13%)
Query: 85 SLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
L + + K L + + + A Y K G GKR RP + L A A++ +
Sbjct: 8 RLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR 65
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
L A I E+IH SL++DD++D D RRG+ ++ G+
Sbjct: 66 PALP-----------------AAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNA 108
Query: 204 AVLAGDFLLSRACVALASLKNTEVVT-LLATVVEHLVTGETMQMTTSSDQRC-------- 254
A+L G + A+ + +A V++ + GE + + + R
Sbjct: 109 AILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQAR 168
Query: 255 ----SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 310
++D Y++ KT +LI+ + K L +A A+++G G+A+Q+IDDVL
Sbjct: 169 WREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVL 228
Query: 311 DFTGTSASLGKGSLSDIRHGIITAPILFAM------EEFPQLRTVVEQGFEDSSNVDIAL 364
D G GK DI+ ++ E +L ++ + + ++V A+
Sbjct: 229 DIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAV 288
Query: 365 EYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
L ++ LA ++ A + +P N L +L ++ R
Sbjct: 289 ALLDSVGAREEALRLAARYREEAERHLAKIPNN---------GTLKELLDFIVARE 335
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 203 bits (519), Expect = 2e-62
Identities = 76/349 (21%), Positives = 131/349 (37%), Gaps = 39/349 (11%)
Query: 86 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 145
L +RL + + P + + + G GK R + + A A
Sbjct: 4 APEAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHG------ 55
Query: 146 LHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAV 205
+E L A E+ L+HDD+ D ++ RRG +L+ + LA+
Sbjct: 56 --APLEAGLE---------AATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLAL 104
Query: 206 LAGDFLLSRACVALA-----SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC--SMDY 258
AGD + + LA L EV+ VV G+ + + + +
Sbjct: 105 NAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPED 164
Query: 259 YMQKTYYKTASLI-SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 317
Y + +K A + ALLAG+T A + G LG A+Q++DDVL+ G A
Sbjct: 165 YFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAY--EEGGLRLGTAFQIVDDVLNLEGGEA 222
Query: 318 SLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGFEDSSNVDI--ALEYLGKS 370
GK D+ G T +L +E E + ++ E ++ LE L S
Sbjct: 223 -YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLAS 281
Query: 371 RGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
R + + A + A +++ ++ ++ L L ++ R
Sbjct: 282 RALAWAKAEAKRLQAEGLALLEAAFQDLPG--KEALDHLRGLLAALVER 328
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps,
trans-prenyltransferase; 2.40A {Sulfolobus solfataricus}
PDB: 2azk_A
Length = 289
Score = 201 bits (513), Expect = 5e-62
Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 39/304 (12%)
Query: 84 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVP 143
+ + + + + + + + GKRFR T+ + AL +
Sbjct: 12 IEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILKD--GKRFRGTLNMFFTVALGGDIK 69
Query: 144 EPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL 203
+ A E++H ASL D++D TRRG + V GN+
Sbjct: 70 DSYG-----------------GALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRK 112
Query: 204 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 263
+ ++L+ A + + + + + + G M +SD Y++
Sbjct: 113 VIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMYDNSD-------YIRTI 165
Query: 264 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA----SL 319
KT SL S A + + D GK LG+ YQ+IDD +D+
Sbjct: 166 ELKTGSLFKLSTVLSAYASKHYNTKQQML-DVGKYLGIIYQVIDDFVDYKTKKVEEIDGS 224
Query: 320 GKGSLSDIRHGIITAPILFAMEEFPQ-----LRTVVEQGF---EDSSNVDIALEYLGKSR 371
K R G + + E+ Q + + Q E S + L K
Sbjct: 225 AKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGLLKEA 284
Query: 372 GIQK 375
I K
Sbjct: 285 NIDK 288
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase,
farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A
{Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A*
2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A*
2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A*
2z52_A* 2z78_A* 2z7h_A* ...
Length = 340
Score = 194 bits (496), Expect = 6e-59
Identities = 56/353 (15%), Positives = 129/353 (36%), Gaps = 38/353 (10%)
Query: 85 SLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPE 144
+ + ++ L ++ + GK FR +++ + +N+ +
Sbjct: 4 NKMEAKIDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPKDQ 61
Query: 145 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLA 204
+++I E++H +SLL DD+ D+A RRG + + + G
Sbjct: 62 LAI-----------------VSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPST 104
Query: 205 VLAGDFLLSRA---CVALASLKN--TEVVTLLATVVEHLVTGETMQMT---TSSDQRCSM 256
+ +++ RA L + + ++T+ + +L G+ + + + +
Sbjct: 105 INTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQ 164
Query: 257 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 316
+ Y+ KT L + + + L+ + L + LG+ YQ+ DD L+
Sbjct: 165 EMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLV-PFINLLGIIYQIRDDYLNLKDFQ 223
Query: 317 ASLGKGSLSDIRHGIITAPILFAM---------EEFPQLRTVVEQGFEDSSNVDIALEYL 367
S KG DI G ++ PI+ A+ E+ ++ ++ D ++ L
Sbjct: 224 MSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQIL 283
Query: 368 GKSRG-IQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 419
+ T+ + N+ ++ + + + L D +I
Sbjct: 284 EFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDH 336
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 191 bits (486), Expect = 4e-58
Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 36/303 (11%)
Query: 84 FSLVADELSILAKRLRSMV-VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 142
V L + RL + E L A ++ + GK RP +LL +++
Sbjct: 7 PPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSID--- 61
Query: 143 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 202
+ D E A I E++HV SLL DDV+D D RRGI + + G+
Sbjct: 62 ----RRSIMDPRILEA-------AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDG 110
Query: 203 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 262
A++A D+L++ + +L +VVT LA V + L G+ + + +
Sbjct: 111 RAIVASDWLIAESIKMAVNL-GADVVTYLADVAQRLSVGQALDLEGE---------RDKA 160
Query: 263 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 322
+KTA LI + ++ G+ + G LG+ YQ DD D K
Sbjct: 161 AEFKTAPLIEAALVMPLVILGRRELIETAK-KLGTKLGILYQYSDDYSDENVERPE-TKS 218
Query: 323 SLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 377
++I G I + ++ ++ + E + V + +
Sbjct: 219 IANEI--GRYLLKIKEHVGDAIAPFERLIKYLIGKALEGTLTVSRTIAENLYFQSHHHHH 276
Query: 378 ELA 380
+
Sbjct: 277 HWS 279
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 185 bits (472), Expect = 5e-55
Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 50/369 (13%)
Query: 85 SLVADELSILAKRLR---SMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVR 141
+V D L+ + + A V + F G GKR RP A +
Sbjct: 23 EVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLA--AQ 78
Query: 142 VPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVM-- 199
+ + +E L A E I +L+HDD++D +DTRRG +++ +
Sbjct: 79 GHKNSSEKLESVLD---------AAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEA 129
Query: 200 --------------GNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVT 240
G +++LAGD L A L + ++
Sbjct: 130 DHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIG 189
Query: 241 GETMQMTTSSDQRCSMDYYMQKTYYKTAS-LISNSCKAIALLAGQTAEVAILAFDYGKNL 299
G+ + + S S++ +KTA+ I+ A +AG + ++ YG ++
Sbjct: 190 GQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDI 249
Query: 300 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME-----EFPQLRTVVEQGF 354
G+A+QL DD+L G A GK + DIR G T + A++ +
Sbjct: 250 GIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVG 309
Query: 355 EDSSNVDI--ALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 412
+ +S DI E++ + ++ + + A +D + ++ R L L
Sbjct: 310 KVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRAL 364
Query: 413 THRVITRNK 421
R R +
Sbjct: 365 AIRSTERRE 373
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 176 bits (448), Expect = 1e-51
Identities = 64/373 (17%), Positives = 123/373 (32%), Gaps = 39/373 (10%)
Query: 68 QIHHQSSSVIEEQLDPFSLVADEL--SILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKR 125
+ + S V+E + + F ++ + + V + + G GK
Sbjct: 15 ALRNLSPVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNAPG--GKC 72
Query: 126 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 185
R ++ L+ + + + ALA + E+ ASL+ DD++D
Sbjct: 73 NRGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAASLVADDIMDQ 122
Query: 186 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVVEHLV 239
+ TRRG G L + FLL + + ++ L
Sbjct: 123 SLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTE 182
Query: 240 TGETMQMTTSSDQRC-----SMDYYMQKTYYKTASL--ISNSCKAIALLAGQTAEVAILA 292
G+ + + T+ + S + Y YKTA A+ ++ + E A
Sbjct: 183 LGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENA 242
Query: 293 FDYGKNLGLAYQLIDDVLDFTGTSASLGK-GSLSDIRHGIITAPILFAMEEF-PQLRTVV 350
+G +Q+ DD LD G A G G +DI+ + ++ ++ P+ R ++
Sbjct: 243 KAILLEMGEYFQIQDDYLDCFGDPALTGAVG--TDIQDNKCSWLVVQCLQRVTPEQRQLL 300
Query: 351 EQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA 408
E G ++ V E ++ I+ +
Sbjct: 301 EDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEI 354
Query: 409 LLDLTHRVITRNK 421
L L ++ R K
Sbjct: 355 FLGLAQKIYKRQK 367
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 158 bits (402), Expect = 7e-45
Identities = 57/380 (15%), Positives = 117/380 (30%), Gaps = 47/380 (12%)
Query: 64 GIRHQIHHQSSSV------IEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFF 117
G H HH SS E F D+ ++ + + EY+
Sbjct: 2 GSSHHHHHHSSGRENLYFQGEYDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYL 61
Query: 118 KM----GVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIH 173
+GK R +L+L+++ + + + + + E I
Sbjct: 62 NCIDYNVKKGKHIRGKILVLISSLSS----AYSNIKRDSIYL---------LGWVVEAIQ 108
Query: 174 VASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TE 226
L+ DD++D RRG V G A+ FL + + L + +
Sbjct: 109 ALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMK 168
Query: 227 VVTLLATVVEHLVTGETMQMTTSSDQRC--SMDYYMQKTYYKTASLISNSCKAIALLAGQ 284
+ + + V G+ + ++ + + Y KT+ L +
Sbjct: 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE 228
Query: 285 ---TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 341
++ L LG YQ+ +DV D+ + DI +T P+ + E
Sbjct: 229 IQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFE 283
Query: 342 EFP--QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 399
+ E ++SS V L + E + + + +++
Sbjct: 284 IADEEMKLKISENYGKNSSLVKDCYNLLKI---NEHYLEYQRNALDYLIKLVKDITDDSL 340
Query: 400 EDVTKSRRALLDLTHRVITR 419
+ V + ++ +
Sbjct: 341 QKVFIH--LIHQISELITNS 358
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 153 bits (387), Expect = 1e-42
Identities = 62/380 (16%), Positives = 129/380 (33%), Gaps = 42/380 (11%)
Query: 66 RHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEV---PKLASAAEYFFKMG-- 120
R ++ Q ++ D ++ + ++ ++ + P++ A ++
Sbjct: 13 RENLYFQGHMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEY 72
Query: 121 --VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLL 178
+ GK R +++ L V + D ++ A + E++ L+
Sbjct: 73 NAIGGKYNRGLTVVVAFREL-VEPRKQDADSLQRAWT---------VGWCVELLQAFFLV 122
Query: 179 HDDVLDDADTRRGIGSLNFVMGNKL-AVLAGDFLLSRACVALAS-----LKNTEVVTLLA 232
DD++D + TRRG G L A+ + L + L ++ L
Sbjct: 123 ADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFL 182
Query: 233 TVVEHLVTGETMQMTTSSD-----QRCSMDYYMQKTYYKTASLISNSCKAIA-LLAGQTA 286
G+T+ + T+ R + Y YK+A A A +AG
Sbjct: 183 QSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDG 242
Query: 287 EVAI-LAFDYGKNLGLAYQLIDDVLDFTGTSASLGK-GSLSDIRHGIITAPILFAMEEF- 343
E A +G +Q+ DD LD G + GK G +DI+ + ++ ++
Sbjct: 243 EKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIG--TDIQDNKCSWLVVQCLQRAT 300
Query: 344 PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDED 401
P+ ++++ G +++ V + + + A I+
Sbjct: 301 PEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL--- 357
Query: 402 VTKSRRALLDLTHRVITRNK 421
L L ++ R K
Sbjct: 358 ---PPAVFLGLARKIYKRRK 374
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 152 bits (385), Expect = 3e-42
Identities = 67/396 (16%), Positives = 126/396 (31%), Gaps = 58/396 (14%)
Query: 62 LHGIRHQIHHQSSSVIEEQLDPFSLVADELS--ILAKRLRSMVVAEVPKLASAAEYFFKM 119
G++ ++ S + + + D + L + + K + +
Sbjct: 18 FQGMKETNSEEADSGLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCL 77
Query: 120 GVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLH 179
G GK R +++L+ + R + E A C+A E++ A L+
Sbjct: 78 G--GKNNRGILVILIYEYVKNR--DINSSEWEKAA---------CLAWCIEILQAAFLVA 124
Query: 180 DDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-------NTEVVTLLA 232
DD++D + RR + + D LL + +V+
Sbjct: 125 DDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFR 184
Query: 233 TVVEHLVTGETMQMTTSSDQRC------------------------SMDYYMQKTYYKTA 268
+ G+ + SD+ + Y +KTA
Sbjct: 185 DATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTA 244
Query: 269 SLISNSCKAI-ALLAGQTAEVAIL--AFDYGKNLGLAYQLIDDVLDFTGTSASLGK-GSL 324
LLAG + I D +G +Q+ DD LD G S GK G
Sbjct: 245 YYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVG-- 302
Query: 325 SDIRHGIITAPILFAMEEF-PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAV 381
SDI++ +T P++ E + + + G + + V + + + +
Sbjct: 303 SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEK 362
Query: 382 KHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 417
+AI+ L E V K LL++ +
Sbjct: 363 AQKAKILSAINELHHEGIEYVLKY---LLEILFTGV 395
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 150 bits (380), Expect = 1e-41
Identities = 60/391 (15%), Positives = 124/391 (31%), Gaps = 41/391 (10%)
Query: 67 HQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLAS----AAEYFFKMG-- 120
H HH SS ++ S+ + ++ ++ E+ Y KM
Sbjct: 5 HHHHHHSSGLVPRGSHMASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDT 64
Query: 121 --VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLL 178
+ GK R ++ +A +L P + + A + + E + L+
Sbjct: 65 TCLGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLV 124
Query: 179 HDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLL 231
DD++D++ TRRG + D LL ++ + ++ +++
Sbjct: 125 EDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRF 184
Query: 232 ATVVEHLVTGETMQMTTSSDQRC----------------SMDYYMQKTYYKTASLISNSC 275
V G+ +T+ D ++ Y + YKTA
Sbjct: 185 NRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLP 244
Query: 276 KAI-ALLAGQTAEVAI-LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333
+ +++ V + + + +G +Q+ DDV+D LGK +DI+ +
Sbjct: 245 LVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCS 303
Query: 334 APILFAMEEF-PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 390
+ + + + G DS V ++ A
Sbjct: 304 WLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKEL 363
Query: 391 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
I+ L + ++ L + R K
Sbjct: 364 IEKLRLCSPG----FAASVETLWGKTYKRQK 390
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 146 bits (371), Expect = 2e-40
Identities = 47/348 (13%), Positives = 101/348 (29%), Gaps = 41/348 (11%)
Query: 102 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 161
+ + +G GK FR + ++ A + ++ + +
Sbjct: 28 IDPNRARYLRIMMDTTCLG--GKYFRG--MTVVNVAEGFLAVTQHDEATKERILHDACVG 83
Query: 162 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 221
I E + L+ DD++D + RRG G D ++ ++ + +
Sbjct: 84 GWMI----EFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMA 139
Query: 222 LKNTEVVTLLATVVE--HLVTGETM---------------------QMTTSSDQRCSMDY 258
L ++ V T Q T+ +
Sbjct: 140 WHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAI 199
Query: 259 YMQKTYYKTASLISNSCKAI-ALLAGQTAEVAI-LAFDYGKNLGLAYQLIDDVLDFTGTS 316
Y + YKT + ++ A V + L +G +Q+ DDV+D
Sbjct: 200 YKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPP 259
Query: 317 ASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQ--GFEDSSNVDIALEYLGKSRGI 373
LGK +DI + + + + + G +D + V + ++
Sbjct: 260 EQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQ 318
Query: 374 QKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
+ + I+ L + ++ + + R K
Sbjct: 319 ADFAAYEAEVVREVESLIEQLKVKSP----TFAESVAVVWEKTHKRKK 362
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 121 bits (305), Expect = 3e-31
Identities = 77/357 (21%), Positives = 125/357 (35%), Gaps = 85/357 (23%)
Query: 77 IEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMAT 136
E L L+ R+ + L A + G GKR RP L++ +
Sbjct: 50 TEALLGHL---------LSGEARADEITRPQNLLEAMRHGVLNG--GKRLRP--FLVIES 96
Query: 137 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGS 194
+ E L + E +H SL+HDD+ +DD D RRG +
Sbjct: 97 VALLGGDA------EAGLH---------VGAALECLHCYSLVHDDLPAMDDDDLRRGQPT 141
Query: 195 LNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTLLATVV--EHLVTGETMQ 245
++ A+LAGD LL+ A +AS N +V LA + G+ +
Sbjct: 142 VHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALD 201
Query: 246 MTTSSDQRCSMDY--YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY 303
+ + + D +Q KT +L+ +C+A A++AG +G+ +GL++
Sbjct: 202 LA-AEKKAPDEDGIITLQA--MKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSF 258
Query: 304 QLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIA 363
QL DD+LD T +A++GK + D G T L
Sbjct: 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALR------------------------- 293
Query: 364 LEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 420
G RE + A+ + E L+ + R
Sbjct: 294 --------GEAWAREKLQEQVAEASELLAPYGEKAA--------ILIAAARFIAERK 334
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 120 bits (303), Expect = 4e-31
Identities = 74/325 (22%), Positives = 120/325 (36%), Gaps = 74/325 (22%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
L + Y +G GKR RP +L++ + + L A
Sbjct: 60 KVLYDSMAYSINVG--GKRIRP--ILMLLSY------YIYKSDYKKILTP---------A 100
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A L
Sbjct: 101 MAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSL 160
Query: 225 T------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNS 274
+ ++A + ++ G+ + + + S+ YM KT LI S
Sbjct: 161 EEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHL--KKTGELIKAS 218
Query: 275 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 334
+ A+LA + +G LGLA+Q+ DD+LD G + LGK D
Sbjct: 219 IMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNY 278
Query: 335 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394
+F G+++ ++ V + S+
Sbjct: 279 ITIF---------------------------------GLEECKKKCVNITEECIEILSSI 305
Query: 395 PENNDEDVTKSRRALLDLTHRVITR 419
N + L LT +++ R
Sbjct: 306 KGNTE--------PLKVLTMKLLER 322
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 119 bits (301), Expect = 5e-31
Identities = 64/328 (19%), Positives = 119/328 (36%), Gaps = 69/328 (21%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
P L A G GKRFRP L +A + + + + IA
Sbjct: 34 PYLEKAFFEMVLNG--GKRFRP--KLFLAVLCALVGQKDYSNQQTEYFK---------IA 80
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL 222
E +H SL+HDD+ +D+A RR +L+ AVL GD L + + ++ A L
Sbjct: 81 LSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALL 140
Query: 223 KNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNSC 275
++ +V L+ + ++ ++ G+ + + +++ ++ + +KTA LIS S
Sbjct: 141 ESHIIVELIKILSANGGIKGMILGQALDCY-FENTPLNLEQLTFLHE--HKTAKLISASL 197
Query: 276 KAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 334
+ +G E +G +GL +Q++DD++D T GK + D +
Sbjct: 198 IMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDS--AKNSF 255
Query: 335 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394
L G+++ A +D+L
Sbjct: 256 VNLL---------------------------------GLERANNYAQTLKTEVLNDLDAL 282
Query: 395 PENNDEDVTKSRRALLD-LTHRVITRNK 421
+ L+ L + +
Sbjct: 283 KPAYPLL-----QENLNALLNTLFKGEG 305
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 118 bits (299), Expect = 1e-30
Identities = 80/327 (24%), Positives = 127/327 (38%), Gaps = 76/327 (23%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L +A Y G GKR RP +L A+A V A+ A
Sbjct: 31 NQLHNAMRYSLFNG--GKRIRP--MLTYASAQLVGDIS------SLTDAS---------A 71
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E IH SL+HDD+ +D+ + RRG + + A+LAGD L + A L++ +
Sbjct: 72 AALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTS 131
Query: 225 T------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNS 274
+++ L ++TG+ + ++ S ++ S+ M +KT +LI S
Sbjct: 132 AQPELAIKLIQELVVASGRNGMITGQMIDLS-SENKNISLAELEQMHV--HKTGALIKAS 188
Query: 275 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333
+ AL GQ + D Y +GLA+Q+ DD++D T + +LGK SD T
Sbjct: 189 VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKAT 248
Query: 334 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393
P L G+ + L V+ A A I
Sbjct: 249 YPKLL---------------------------------GLDGAKALVVRLHEQAIAQISE 275
Query: 394 LPENNDEDVTKSRRALLDLTHRVITRN 420
+ + L DL + +I RN
Sbjct: 276 FGDKSQ--------PLTDLANYIIDRN 294
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 118 bits (297), Expect = 2e-30
Identities = 70/329 (21%), Positives = 119/329 (36%), Gaps = 77/329 (23%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
P++ SA Y G GKR RP +L+ + V + IA
Sbjct: 36 PQIRSALHYALFSG--GKRIRP--ILVYLAGDLIDVDQ------GVLDI---------IA 76
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E+ H SL+HDD+ +D+ D RRG S + A+L GD + + A L +
Sbjct: 77 AALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLS 136
Query: 225 T--------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLIS 272
+ +L + +V+G+++ ++ + + + + KT LI
Sbjct: 137 PLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHL--LKTGKLIL 194
Query: 273 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
+ + + +E A YGK++GL +Q+ DD LD + LGKG SD +
Sbjct: 195 ACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQK 254
Query: 332 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391
T LF Q+ E H +A ++
Sbjct: 255 TTFATLF---------------------------------NKQQLEEEIAVHYQIAMDSL 281
Query: 392 DSLPENNDEDVTKSRRALLDLTHRVITRN 420
AL++LT ++ R+
Sbjct: 282 RLFGSKAA--------ALIELTKQLQNRS 302
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 117 bits (296), Expect = 5e-30
Identities = 78/329 (23%), Positives = 113/329 (34%), Gaps = 78/329 (23%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L A Y G GKR RP LL AT + V + A
Sbjct: 36 ERLHQAMRYSVLGG--GKRMRP--LLTYATGQTIGVAA------DLLDGP---------A 76
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E IHV SL+HDD+ +DD D RRG + + A+LAGD L + A LA +
Sbjct: 77 CAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPS 136
Query: 225 T--------EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLIS 272
++ LA +V G+ + + S ++ + M KT +LI
Sbjct: 137 IAVPAENRIAMIETLAKASGPAGMVGGQAIDLA-SVGKKLDLPGLENMHI--RKTGALIR 193
Query: 273 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
S + L D Y K +GLA+Q+ DD+LD + +LGK D H
Sbjct: 194 ASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNK 253
Query: 332 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391
P L G+ +E A + A ++
Sbjct: 254 PNYPALL---------------------------------GLSGAKEKAEEMHEAALESL 280
Query: 392 DSLPENNDEDVTKSRRALLDLTHRVITRN 420
D L +L +I R
Sbjct: 281 AGFGPEAD--------LLRELARFIIQRQ 301
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 116 bits (294), Expect = 5e-30
Identities = 83/329 (25%), Positives = 124/329 (37%), Gaps = 78/329 (23%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L A Y G GKR RP LL A + E A A
Sbjct: 30 ARLYEAMRYSVMNG--GKRVRP--LLAYAACEALGGKP------EQANGA---------A 70
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E+IH SL+HDD+ +DD D RRG + + A+LAGD L S A AL
Sbjct: 71 CAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPAL 130
Query: 225 TEV--------VTLLATVV--EHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLIS 272
++ VT LA +V G+ + + S + YM + +KT +LI
Sbjct: 131 SDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLG-SVGLKLDQQALEYMHR--HKTGALIE 187
Query: 273 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 188 ASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDK 247
Query: 332 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391
T P L G+ +E A++ + A A+
Sbjct: 248 PTYPALL---------------------------------GLAAAKEYALELRDQALHAL 274
Query: 392 DSLPENNDEDVTKSRRALLDLTHRVITRN 420
+ L +L ++ R
Sbjct: 275 RPFDAAAE--------PLRELARYIVERR 295
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 116 bits (293), Expect = 6e-30
Identities = 76/326 (23%), Positives = 124/326 (38%), Gaps = 73/326 (22%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L + Y G GKR RP +LL+ T ++ L AL
Sbjct: 28 TQLEESMLYSLNAG--GKRIRP--VLLLLTLDSLNTEYELGMKSAIAL------------ 71
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
EMIH SL+HDD+ +D+ D RRG + + V G A+LAGD LL++A ++S
Sbjct: 72 ---EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 128
Query: 225 T------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISNS 274
+V+ L+ +V G+ + M S Q ++ + K KT +L++ +
Sbjct: 129 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHK--TKTGALLTFA 185
Query: 275 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 334
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 186 VMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTY 245
Query: 335 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394
L G + H + A + +
Sbjct: 246 VSLL---------------------------------GKDGAEDKLTYHRDAAVDELTQI 272
Query: 395 PENNDEDVTKSRRALLDLTHRVITRN 420
E + LL++ +R+
Sbjct: 273 DEQFNTK------HLLEIVDLFYSRD 292
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 116 bits (293), Expect = 6e-30
Identities = 84/330 (25%), Positives = 135/330 (40%), Gaps = 75/330 (22%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+ +Y +G GKR RP L+ AT V A A
Sbjct: 30 TPVVETMQYGALLG--GKRLRP--FLVYATGHMFGVST------NTLDAP---------A 70
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E IH SL+HDD+ +DD D RRG+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADM 130
Query: 225 TEV--------VTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLIS 272
EV ++ LA+ + + G+ + + + + +D + + +KT +LI
Sbjct: 131 PEVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLDALERIHR--HKTGALIR 187
Query: 273 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 188 AAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGK 247
Query: 332 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391
T P L G+++ R+ A + A ++
Sbjct: 248 STYPALL---------------------------------GLEQARKKARDLIDDARQSL 274
Query: 392 DSLPENNDEDVTKSRRALLDLTHRVITRNK 421
L E + + AL L +I RNK
Sbjct: 275 KQLAEQSLDT-----SALEALADYIIQRNK 299
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 116 bits (293), Expect = 8e-30
Identities = 72/329 (21%), Positives = 122/329 (37%), Gaps = 78/329 (23%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
L A Y +G GKR RP L+ T + D A
Sbjct: 36 LPLIEAMRYGLLLG--GKRARP--YLVYITGQMLGCEL------SDLDTP---------A 76
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E IH SL+HDD+ +DD + RRG + + A+L GD L + A LA
Sbjct: 77 SAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDL 136
Query: 225 T--------EVVTLLATV--VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLIS 272
+ ++ LA + + G+ + + + ++ S++ + + KT +L+
Sbjct: 137 SAAGETQRVAMLQALAEASGAQGMCLGQALDLA-AENRLISLEELETIHR--NKTGALMR 193
Query: 273 NSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 331
+ + AL AG+ + D Y + +GLA+Q+ DD+LD + +LGK SD
Sbjct: 194 CAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNK 253
Query: 332 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 391
T P L G++ ++ A A A+
Sbjct: 254 STYPALL---------------------------------GLEGAQQKAHTLLQEALLAL 280
Query: 392 DSLPENNDEDVTKSRRALLDLTHRVITRN 420
+++P N + L + V+ R
Sbjct: 281 EAIPYNTE--------HLEEFARYVVERK 301
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 115 bits (289), Expect = 2e-29
Identities = 74/312 (23%), Positives = 112/312 (35%), Gaps = 76/312 (24%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
GKR R L + +A + A+ E +H SL+HDD+
Sbjct: 41 GKRLRA--FLAIESAAIHGISMAQAMPAALAV---------------EALHAYSLVHDDM 83
Query: 183 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT------EVVTLLATV 234
+D+ D RRG+ +++ + AVLAGD L + A +V LA
Sbjct: 84 PCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQA 143
Query: 235 --VEHLVTGETMQMT-TSSDQRCSMDY--YMQKTYYKTASLISNSCKAIALLAGQTAEVA 289
E +V G+ + + ++ ++D +Q KT +LIS + +A A+LAG A+
Sbjct: 144 SGAEGMVYGQALDIAAETAAVPLTLDEIIRLQA--GKTGALISFAAQAGAILAG--ADRG 199
Query: 290 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 349
L Y LGLA+Q+ DD+LD G + GK D T L
Sbjct: 200 PLT-AYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL----------- 247
Query: 350 VEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 409
G+ + A A AA+ E L
Sbjct: 248 ----------------------GLAGAKSRAADLVAEAEAALAPYGEAAS--------TL 277
Query: 410 LDLTHRVITRNK 421
VI R+K
Sbjct: 278 RACARYVIERDK 289
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 111 bits (281), Expect = 3e-28
Identities = 69/325 (21%), Positives = 114/325 (35%), Gaps = 69/325 (21%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+LA+A Y G GKR RP LL +AT ++ V +A E
Sbjct: 34 AQLAAAMTYSVLAG--GKRLRP--LLTVATMQSLGVTFVPERHWRPVMALE--------- 80
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL 222
++H SL+HDD+ +D+ RRG + + G +A LAGD LL+ A + L
Sbjct: 81 ----LLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL 136
Query: 223 KNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNSC 275
T L+ + +V G+ + S + + K KT +L+ +
Sbjct: 137 PATMQAALVQALATAAGPSGMVAGQAKDIQ-SEHVNLPLSQLRVLHK--EKTGALLHYAV 193
Query: 276 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 335
+A +L + GLA+Q+ DD+LD + A +GK + D T P
Sbjct: 194 QAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYP 253
Query: 336 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 395
G+ + + + AA+ LP
Sbjct: 254 GKL---------------------------------GLIGANQALIDTIHSGQAALQGLP 280
Query: 396 ENNDEDVTKSRRALLDLTHRVITRN 420
+ T+ ++ R
Sbjct: 281 TS-----TQRDDLAAFFSYFDTERV 300
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 111 bits (280), Expect = 4e-28
Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 65/304 (21%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L A Y G GKR RP LL++ T A E+ T+ +A
Sbjct: 36 ERLKEAMLYSIHAG--GKRLRP--LLVLTTV--------------AAFQKEMETQDYQVA 77
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL 222
EMIH SL+HDD+ +DD D RRG + + V G A+LAGD LL+ A ++L+ L
Sbjct: 78 ASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQL 137
Query: 223 KNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISNSC 275
+E V L+ + + +V+G+ + +++ + + KT +LI +
Sbjct: 138 GLSEKVLLMQQLAKAAGNQGMVSGQMGDIE-GEKVSLTLEELAAVHE--KKTGALIEFAL 194
Query: 276 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 335
A +LA QT EV L + + GLA+Q+ DD+LD T T A LGK D T P
Sbjct: 195 IAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYP 254
Query: 336 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 395
L GI ++ +A ++ +
Sbjct: 255 ALL---------------------------------GIAGAKDALTHQLAEGSAVLEKIK 281
Query: 396 ENND 399
N
Sbjct: 282 ANVP 285
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 111 bits (279), Expect = 5e-28
Identities = 72/326 (22%), Positives = 127/326 (38%), Gaps = 74/326 (22%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
P A K G GK FR LL++ + + + + AL A
Sbjct: 25 PFFNEALALMLKAG--GKHFRA--QLLLSVVQSNKP-----ELLNQALDV---------A 66
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL 222
E IH SL+HDD+ +D+AD RRGI +L+ A+L GD L + A ++ A L
Sbjct: 67 LALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHL 126
Query: 223 KNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMD--YYMQKTYYKTASLISNSC 275
K+ + L+ T+ + +V G+ + D+R S++ ++ +KTA LI+ +
Sbjct: 127 KDEIKIKLIKTLAFNAGLNGMVIGQAIDCF-FEDKRLSLNELEFLHT--HKTARLIAAAL 183
Query: 276 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 335
K + E + + G LGL +Q+ DD++D T + GK + +DI +
Sbjct: 184 KMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFV 241
Query: 336 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 395
L G+++ + N ++ L
Sbjct: 242 NLL---------------------------------GLEQAIKTKENLLNECEQDLEKLN 268
Query: 396 ENNDEDVTKSRRALLDLTHRVITRNK 421
E K + + +L + + +
Sbjct: 269 E-------KLAQMIQNLIIQYLEGHH 287
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 101 bits (254), Expect = 1e-24
Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 39/249 (15%)
Query: 96 KRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 154
L+ + P + + + L +A E + DA+
Sbjct: 19 SYLKKAIPIRAPESVFEPMHHLTFAA--PRTSAS--ALCVAAC------ELVGGDRSDAM 68
Query: 155 ATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSR 214
A A ++HVA+ H++ L D + + +L GD ++
Sbjct: 69 AA---------AAAVHLMHVAAYTHEN-LPLTDGPMSKSEIQHKFDPNIELLTGDGIIPF 118
Query: 215 ACVALASLKNT---------EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDY--YMQ 261
+A + + L V+ E +V G+ ++ +Q ++ Y+
Sbjct: 119 GLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHEL--GLNQLNDLELIEYVC 176
Query: 262 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD-FTGTSASLG 320
K K +L + A+L G + +G +G L+ F G L
Sbjct: 177 K--KKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGFEGRIKELK 234
Query: 321 KGSLSDIRH 329
+ ++ ++
Sbjct: 235 ELAVKELES 243
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 98.4 bits (246), Expect = 2e-23
Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 37/226 (16%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
K+ A Y G GKR RP +L +A V E A+ A
Sbjct: 38 LKIHEAMRYSLLAG--GKRVRP--VLCIAACELVGGEE------SLAMPA---------A 78
Query: 167 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LLS A LAS +
Sbjct: 79 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS 138
Query: 225 TEV--------VTLLATVV--EHLVTGET--MQMTTSSDQRCSMDY--YMQKTYYKTASL 270
+EV V LA + E LV G+ + +++ ++ +KTA+L
Sbjct: 139 SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHL--HKTAAL 196
Query: 271 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 316
+ S ++ G + E + + +GL +Q++DD+LD T +S
Sbjct: 197 LEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 90.8 bits (226), Expect = 8e-21
Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 49/249 (19%)
Query: 123 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 182
L +A E + A+A A ++H A+ +H+ +
Sbjct: 40 PATAAS--TLCLAAC------ELVGGDRSQAMAA---------AAAIHLVHAAAYVHEHL 82
Query: 183 -LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT----------EVVTLL 231
L D ++ G + +L GD ++ LA + V+ +
Sbjct: 83 PLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEI 142
Query: 232 ATVV--EHLVTGETMQMTTSSDQRCSMDY--YMQKTYYKTASLISNSCKAIALLAGQTAE 287
+ E +++G + D S+D+ Y+ K K + + A+L G E
Sbjct: 143 SRAGGPEGMISGLHREEE-IVDGNTSLDFIEYVCK--KKYGEMHACGAACGAILGGAAEE 199
Query: 288 VAILAFDYGKNLGL---------AYQLIDDVLD---FTGTSASLGK--GSLSDIRHGIIT 333
++G G ++QLID+ + LG G +++ ++
Sbjct: 200 EIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGGFHGKNAELMSSLVA 259
Query: 334 APILFAMEE 342
P L+A
Sbjct: 260 EPSLYAAHH 268
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 88.3 bits (218), Expect = 6e-20
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 26/235 (11%)
Query: 96 KRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 154
+R+R ++ A Y +G G R RP ++L + L V L
Sbjct: 20 ERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEEEXLLD------- 70
Query: 155 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLL 212
+A E+ H ASL+HDD+ +D+AD RRG S + G +A+LAGD L
Sbjct: 71 ----------VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLF 120
Query: 213 SRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLI 271
A ++ + N+ + + L+ GE M + S + + + T +L
Sbjct: 121 FLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALF 180
Query: 272 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 326
+ A +L G G+ G+A+Q+ DD+ D G+ +GK D
Sbjct: 181 AFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 2e-10
Identities = 55/445 (12%), Positives = 114/445 (25%), Gaps = 159/445 (35%)
Query: 58 SLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSM-------VVAEVPKLA 110
+ R Q + + + E L P V + + V +V +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLE-LRPAKNVL---------IDGVLGSGKTWVALDVCL-S 173
Query: 111 SAAEYFFKMGVE----GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+ + P +L M L ++ + + +LR A
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQA 232
Query: 167 EITEMI----HVASLLHDDVLDD-AD---------------TRRGIGSLNFVMGNKLAVL 206
E+ ++ + LL VL + + T R +F+ +
Sbjct: 233 ELRRLLKSKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 207 AGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSM---------- 256
+ D +L EV +LL ++ ++ T++ +R S+
Sbjct: 290 SLDHHSM-------TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 257 --DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI----DDVL 310
D + K ++I +S + +L + + + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESS-------------LNVLEPAEYRKM---FDRLSVFPPSAH 386
Query: 311 DFTGTSASLGKGSLSDIRHGIITAPIL-------------FAMEEFPQLRTVVEQGFEDS 357
I +L + + + V +Q E +
Sbjct: 387 ---------------------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 358 SNV-DIALEYLGKSRGIQKTRELAVKHANLAAAAIDS------------LPENND----- 399
++ I LE K H ++ +D +P D
Sbjct: 426 ISIPSIYLELK------VKLENEYALHRSI----VDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 400 ------------EDVTKSRRALLDL 412
E +T R LD
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF 500
Score = 46.8 bits (110), Expect = 1e-05
Identities = 56/405 (13%), Positives = 109/405 (26%), Gaps = 114/405 (28%)
Query: 68 QIHHQSSSVIEEQLDPF------SLVADEL-SILAKRLRSMVVAEVPKLASAAEYFFKM- 119
+ +Q ++ D F V D SIL+K ++ S F
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRLFWTL 71
Query: 120 ---GVEG-KRFRPTVL------LLMATALNVRVP-----------EPLHDGVEDALATEL 158
E ++F VL L+ R P + L++ + A
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYN 130
Query: 159 RTRQQCIAEITEMIHVAS-----LLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 213
+R Q ++ + + L+ + G G K +A D LS
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVL--------GSG--------K-TWVALDVCLS 173
Query: 214 RACVAL-------ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYK 266
+LKN + +++ L+ T+ SD ++ + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 267 TASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD------FTGTSASL- 319
L+ + LL +L +V + F + L
Sbjct: 234 LRRLLKSKPYENCLL--------VL---------------LNVQNAKAWNAFNLSCKILL 270
Query: 320 --GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 377
++D T I +++ + L+YL Q
Sbjct: 271 TTRFKQVTDFLSAATTTHI--SLDHH-------SMTLTPDEVKSLLLKYLDCR--PQDLP 319
Query: 378 ELAVKHANLAAAAI-----------DSLPENNDEDVTKSRRALLD 411
+ + I D+ N + +T + L+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 9e-10
Identities = 65/427 (15%), Positives = 114/427 (26%), Gaps = 157/427 (36%)
Query: 7 LSRISRISKKTS--FGR-----RWL------PSHPLLSGASHSAAAAAADSSVKVLGCRE 53
LS + R + F + WL P L S
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----SIPI-------------- 236
Query: 54 AYSWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAA 113
S P L G+ Q+ H + P L L + +V A +
Sbjct: 237 ----SCP-LIGV-IQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 114 EYF-----------FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 162
E F F +GV P T+L P L D +E+
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPN------TSLP---PSILEDSLENNEGVP----- 335
Query: 163 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 222
+ M+ +++L + V D + N + L + SL
Sbjct: 336 ------SPMLSISNLTQEQVQDY------VNKTN-------SHLPAGKQVE------ISL 370
Query: 223 KNTE---VVT----LLATVVEHLVTGETMQMTTSSDQ----------RCSMDY------- 258
N VV+ L + L + + DQ + S +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 259 ---YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL-----GLAYQLIDD-- 308
+ + + + K + ++ + G +L ++ +++D
Sbjct: 428 HSHLLVPA---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 309 ----------------VLDFTGTSASLGKGSL-SDIRHG----IITAPILFAMEEFPQLR 347
+LDF G + G G L + G +I A ++ P
Sbjct: 485 RLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKDGTGVRVIVA---GTLDINPDD- 539
Query: 348 TVVEQGF 354
+ GF
Sbjct: 540 ---DYGF 543
Score = 41.6 bits (97), Expect = 5e-04
Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 84/280 (30%)
Query: 72 QSSSVIEEQLDPFSLVADE-------LSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGK 124
++S ++ + AD SIL +V P + +F G +GK
Sbjct: 1637 KTSKAAQDVWNR----ADNHFKDTYGFSILD------IVINNPV--NLTIHF--GGEKGK 1682
Query: 125 RFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD-DVL 183
R R ++ E + DG ++ EI E + + +L
Sbjct: 1683 RIRENYSAMIF--------ETIVDGKLKT--------EKIFKEINEHSTSYTFRSEKGLL 1726
Query: 184 DD-ADTRRGIGSLNFVMGNKLA---VLAGDFLLSRACV----------ALASLKNTEVVT 229
T+ + +M A L L+ ALASL +V++
Sbjct: 1727 SATQFTQPAL----TLME--KAAFEDLKSKGLIPADATFAGHSLGEYAALASL--ADVMS 1778
Query: 230 LLATVVEHLVT--GETMQMTTSSDQRCSMDYYM------QKTYYKTASLISNSCKAIALL 281
+ + V +V G TMQ+ D+ +Y M + + + + +
Sbjct: 1779 IESLV--EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 282 AGQTAEVA---------ILAFDYGKNLGLAYQLIDDVLDF 312
G E+ + A G L + +VL+F
Sbjct: 1837 TGWLVEIVNYNVENQQYVAA---GDLRAL--DTVTNVLNF 1871
Score = 40.8 bits (95), Expect = 8e-04
Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 76/241 (31%)
Query: 1 MLIYRGLSR---ISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSW 57
ML L++ ++K LP+ + + + A + V V G
Sbjct: 338 MLSISNLTQEQVQDYVNKT----NSHLPAGKQVEISLVN----GAKNLV-VSG------- 381
Query: 58 SLP-ALHGIRHQIHHQSSSVIEEQLD-PFSLVADELSILAKR-----LRSMVVAEVP--- 107
P +L+G+ + + +Q PFS +R R + VA P
Sbjct: 382 -PPQSLYGLNLTLRKAKAPSGLDQSRIPFS----------ERKLKFSNRFLPVA-SPFHS 429
Query: 108 -KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
L A++ K + A + + P++D D ++LR I+
Sbjct: 430 HLLVPASDLIN------KDLVKNNVSFNAKDIQI----PVYD-TFD--GSDLRVLSGSIS 476
Query: 167 E-ITEMI----------HVASLLHDDVLD-DADTRRGIGSLNFVMGNKLA-----VLAGD 209
E I + I H +LD G+G L NK ++AG
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATH--ILDFGPGGASGLGVL--THRNKDGTGVRVIVAGT 532
Query: 210 F 210
Sbjct: 533 L 533
Score = 38.5 bits (89), Expect = 0.004
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 38/122 (31%)
Query: 318 SLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGF----EDSSNVDIALEYLG 368
+L GS + H ++ F + E+F ++ +GF E ++ ++ ++LG
Sbjct: 10 TLSHGS---LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 369 -----KSRGIQKTRELAVK----------------HANLAAAAIDSLPENNDEDVTKSRR 407
+ + HA LAA L + ND + K++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAA----KLLQENDTTLVKTKE 121
Query: 408 AL 409
+
Sbjct: 122 LI 123
Score = 34.6 bits (79), Expect = 0.068
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 41/124 (33%)
Query: 4 YRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLPALH 63
YRG++ + + GR S+ A V +E AL
Sbjct: 1788 YRGMT-MQVAVPRDELGR------------SNYGMIAINPGRVAASFSQE-------ALQ 1827
Query: 64 GIRHQIHHQSSSVIE--------EQ---------LDPFSLVADELSI----LAKRLRSMV 102
+ ++ ++ ++E +Q LD + V + + + + + +S+
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 103 VAEV 106
+ EV
Sbjct: 1888 LEEV 1891
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.70
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 232 ATVVEHLVT-GETMQMTTSSDQRCSMDYYMQKTYYKTAS 269
A V++ L+ G + +TTS + DYY Q Y K +
Sbjct: 491 AEVLQGLLQGGAKVVVTTSRFSKQVTDYY-QSIYAKYGA 528
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 28.2 bits (63), Expect = 5.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 148 DGVEDALATELRTRQQCIAEI--TEMIHVASL 177
V L + RQ+ I E+ E + L
Sbjct: 7 GCVNQVLTAKEIKRQEAIFELSQGEEDLIEDL 38
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.3 bits (64), Expect = 6.1
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 328 RHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYL 367
R + E L +V Q DS N+D ALE L
Sbjct: 243 REKELEVSGWTK-AELEALTPIVNQANSDSYNLDSALELL 281
>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
rossman fold and helix B (MTAC); HET: B13; 2.50A
{Methanosarcina barkeri}
Length = 461
Score = 28.1 bits (62), Expect = 7.1
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 132 LLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRG 191
L T ++R D + L +QC +++ V S+ +V D A R
Sbjct: 121 ALRHTIGDIRENREFLQLRGDKYSVFLEAFEQCAENGADLLSVESMGGKEVFDYAVLRND 180
Query: 192 IGSLNFVMG 200
I L + +G
Sbjct: 181 IPGLLYSIG 189
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA
helicase, rnpase, RNA unwindase, molecular model mRNA
splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A*
3hib_A
Length = 328
Score = 27.6 bits (60), Expect = 8.0
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 66 RHQIHHQSSSVIEEQLDPFSLVADELSILAK-------RLRSMVVAEVPKLASAAEYFFK 118
+ + + L S + + L +L+ LR A + KL+ F
Sbjct: 20 HYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFP 79
Query: 119 MGVE-GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 177
G LLL A + +P + ++D L + + ++ ++ +
Sbjct: 80 EHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLNAT 139
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint
center for structural genomics, JCSG; HET: MSE FLC;
2.00A {Streptococcus agalactiae 2603V}
Length = 181
Score = 26.7 bits (59), Expect = 10.0
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 275 CKAIALLAGQTAEVAILAFD---YGKNLGLAYQLIDDVLDF 312
A+ + +TA + G + L +L + + F
Sbjct: 85 SIALLRIDDKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLF 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.368
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,380,079
Number of extensions: 403127
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 824
Number of HSP's successfully gapped: 65
Length of query: 421
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,021,377
Effective search space: 1306947525
Effective search space used: 1306947525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)