RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014640
(421 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 115 bits (287), Expect = 6e-30
Identities = 60/312 (19%), Positives = 110/312 (35%), Gaps = 33/312 (10%)
Query: 109 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 168
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 169 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 228
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 229 TLLATV-VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 287
L +E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 288 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 344
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 345 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 404
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 405 SRRALLDLTHRV 416
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 102 bits (254), Expect = 8e-25
Identities = 63/368 (17%), Positives = 118/368 (32%), Gaps = 39/368 (10%)
Query: 73 SSSVIEEQLDPFSLVADEL--SILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPT 129
S V+E + + F ++ + + V + L +Y GK R
Sbjct: 1 SPVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA---PGGKCNRGL 57
Query: 130 VLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTR 189
++ L+ + + + ALA + E+ L+ DD++D + TR
Sbjct: 58 TVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDIMDQSLTR 107
Query: 190 RGIGSLNFVMGNKLAVLAGDFLLSRA-----------CVALASLKNTEVVTLLATVVEHL 238
RG G L + FLL + L + T T + +
Sbjct: 108 RGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQM 167
Query: 239 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEVAILAFDYG 296
+ T ++ S + Y YKTA A+ ++ + E A
Sbjct: 168 LDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAIL 227
Query: 297 KNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE 355
+G +Q+ DD LD G A GK +DI+ + ++ ++ P+ R ++E +
Sbjct: 228 LEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYG 286
Query: 356 --DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 413
+ V E ++ I+ + L L
Sbjct: 287 RKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNR------LPKEIFLGLA 340
Query: 414 HRVITRNK 421
++ R K
Sbjct: 341 QKIYKRQK 348
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 99.3 bits (246), Expect = 3e-24
Identities = 70/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 88 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 147
+ EL + +R+ ++ P+ + GK R + +L V + E
Sbjct: 2 SYELEKVKERIEQILSQFFPE---QIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAI 56
Query: 148 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLA 207
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV A
Sbjct: 57 S----------------SLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAA 100
Query: 208 GDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKT 267
GD +L A + + N ++ V+ + E + S + + + Y++ K+
Sbjct: 101 GDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAE-LIEQLSRYKPITKEEYLRIVEGKS 159
Query: 268 ASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 327
+L + + ALL G+ E ++ G +G YQ+ DD++DF G G D+
Sbjct: 160 GALFGLALQLPALLEGELGED---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDL 215
Query: 328 RHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 387
++G+ + P++ AME+FP+ R + E + + ++ + +++ E
Sbjct: 216 KNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNV 270
Query: 388 AAAIDSLPE 396
L +
Sbjct: 271 IIENSWLRD 279
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 99.3 bits (246), Expect = 4e-24
Identities = 75/328 (22%), Positives = 122/328 (37%), Gaps = 71/328 (21%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+ +Y +G GKR RP ++ V A
Sbjct: 30 TPVVETMQYGALLG--GKRLRPFLVYATGHMFGVS-----------------TNTLDAPA 70
Query: 167 EITEMIHVASLLHDDVLDDADTRR--GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
E IH SL+HDD+ D G+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADM 130
Query: 225 TEV----------VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 274
EV A+ + + G+ + + + + +D + +KT +LI +
Sbjct: 131 PEVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLDALERIHRHKTGALIRAA 189
Query: 275 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 333
+ AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 334 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 393
P L +E + R+ A + A ++
Sbjct: 250 YPALLGLE---------------------------------QARKKARDLIDDARQSLKQ 276
Query: 394 LPENNDEDVTKSRRALLDLTHRVITRNK 421
L E + + AL L +I RNK
Sbjct: 277 LAEQSLD-----TSALEALADYIIQRNK 299
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 79.7 bits (195), Expect = 3e-17
Identities = 69/323 (21%), Positives = 112/323 (34%), Gaps = 69/323 (21%)
Query: 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 166
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 167 EITEMIHVASLLHDDVLDDADTRRG--IGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 224
EMIH SL+HDD+ + + + V G A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 225 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 276
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 277 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 336
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 337 LFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 396
L G + H + A + + E
Sbjct: 247 LL---------------------------------GKDGAEDKLTYHRDAAVDELTQIDE 273
Query: 397 NNDEDVTKSRRALLDLTHRVITR 419
+ + LL++ +R
Sbjct: 274 QFN------TKHLLEIVDLFYSR 290
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 26.5 bits (58), Expect = 4.1
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 302 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE---DSS 358
+L + + + + E + V +G+ D
Sbjct: 36 VEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRSDVD 95
Query: 359 NVDIALEYLGKSR-----GIQKTRELAVKHANLAAAAIDSLPEN 397
+ + +GK+ G+ L N+A +I P+N
Sbjct: 96 DGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKN 139
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 26.6 bits (58), Expect = 5.0
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 147 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 193
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 25.9 bits (56), Expect = 8.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 137 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 193
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.368
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,445,714
Number of extensions: 64204
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 12
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)