Query 014641
Match_columns 421
No_of_seqs 116 out of 811
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1479 Nucleoside transporter 100.0 1E-77 2.3E-82 593.5 27.8 390 26-421 8-404 (406)
2 TIGR00939 2a57 Equilibrative N 100.0 3.1E-73 6.7E-78 580.7 30.7 375 41-420 1-432 (437)
3 PF01733 Nucleoside_tran: Nucl 100.0 6.4E-58 1.4E-62 450.0 -0.5 277 139-420 1-308 (309)
4 PF02487 CLN3: CLN3 protein; 100.0 7E-31 1.5E-35 262.6 19.9 358 37-419 1-394 (402)
5 KOG3880 Predicted small molecu 99.9 6.8E-26 1.5E-30 214.1 8.9 352 37-418 13-400 (409)
6 TIGR00881 2A0104 phosphoglycer 98.6 5.5E-06 1.2E-10 81.8 19.0 339 50-415 9-365 (379)
7 TIGR00893 2A0114 d-galactonate 98.5 2E-05 4.4E-10 77.9 22.0 335 54-416 12-367 (399)
8 TIGR00895 2A0115 benzoate tran 98.5 3.4E-05 7.3E-10 76.8 21.7 106 305-416 288-394 (398)
9 TIGR00890 2A0111 Oxalate/Forma 98.4 0.00012 2.5E-09 72.3 23.5 335 36-416 4-351 (377)
10 TIGR00900 2A0121 H+ Antiporter 98.3 9.8E-05 2.1E-09 72.6 21.9 309 73-416 37-357 (365)
11 TIGR00892 2A0113 monocarboxyla 98.3 5.5E-05 1.2E-09 78.4 20.8 109 304-416 278-389 (455)
12 PRK11551 putative 3-hydroxyphe 98.2 0.00024 5.1E-09 71.8 22.1 301 73-416 53-364 (406)
13 PRK10489 enterobactin exporter 98.2 0.00039 8.5E-09 70.7 23.7 303 73-416 55-368 (417)
14 TIGR00891 2A0112 putative sial 98.2 0.0018 3.9E-08 64.7 27.6 125 51-187 27-157 (405)
15 TIGR00879 SP MFS transporter, 98.2 0.00076 1.6E-08 68.6 25.2 104 74-186 75-183 (481)
16 PRK11663 regulatory protein Uh 98.2 0.00024 5.3E-09 73.0 21.3 101 73-185 61-166 (434)
17 PF07690 MFS_1: Major Facilita 98.1 0.00022 4.7E-09 69.8 18.6 323 52-412 12-351 (352)
18 PRK10213 nepI ribonucleoside t 98.1 0.0012 2.7E-08 66.9 24.3 287 78-416 63-360 (394)
19 PRK11273 glpT sn-glycerol-3-ph 98.1 0.00068 1.5E-08 70.0 22.2 116 55-179 48-169 (452)
20 PRK08633 2-acyl-glycerophospho 98.1 0.00031 6.7E-09 80.7 21.2 315 74-416 51-378 (1146)
21 TIGR01299 synapt_SV2 synaptic 98.0 0.0038 8.1E-08 68.7 27.8 105 306-416 599-704 (742)
22 KOG4255 Uncharacterized conser 98.0 0.00048 1E-08 66.9 18.0 186 37-230 12-215 (439)
23 PRK03545 putative arabinose tr 97.9 0.0053 1.1E-07 61.8 25.0 116 59-186 32-153 (390)
24 PRK05122 major facilitator sup 97.9 0.0032 6.9E-08 63.5 23.2 306 61-414 41-356 (399)
25 COG2814 AraJ Arabinose efflux 97.9 0.0022 4.8E-08 64.9 21.3 294 77-416 55-355 (394)
26 TIGR00710 efflux_Bcr_CflA drug 97.9 0.0042 9E-08 61.8 23.1 122 50-183 19-146 (385)
27 cd06174 MFS The Major Facilita 97.9 0.0051 1.1E-07 59.6 22.9 297 50-416 13-321 (352)
28 PLN00028 nitrate transmembrane 97.8 0.011 2.3E-07 61.8 25.7 21 305-325 291-311 (476)
29 TIGR00885 fucP L-fucose:H+ sym 97.8 0.0046 9.9E-08 63.3 22.4 138 36-186 7-150 (410)
30 TIGR00712 glpT glycerol-3-phos 97.8 0.0023 5.1E-08 65.7 20.2 124 52-184 43-172 (438)
31 PRK11652 emrD multidrug resist 97.8 0.0084 1.8E-07 60.3 23.8 55 361-416 300-354 (394)
32 COG0738 FucP Fucose permease [ 97.8 0.0011 2.5E-08 66.5 16.2 145 24-182 5-156 (422)
33 PRK09556 uhpT sugar phosphate 97.7 0.0014 3.1E-08 68.0 16.8 122 58-186 51-178 (467)
34 TIGR00898 2A0119 cation transp 97.7 0.013 2.8E-07 61.1 24.1 103 308-415 361-465 (505)
35 TIGR00886 2A0108 nitrite extru 97.7 0.0087 1.9E-07 59.2 21.8 104 52-166 17-122 (366)
36 COG2271 UhpC Sugar phosphate p 97.6 0.011 2.4E-07 60.0 21.3 299 77-416 71-399 (448)
37 PRK09874 drug efflux system pr 97.6 0.018 3.9E-07 57.9 23.5 105 306-416 262-367 (408)
38 PF05977 MFS_3: Transmembrane 97.6 0.023 5E-07 60.1 24.9 328 37-416 11-363 (524)
39 PRK10133 L-fucose transporter; 97.6 0.014 3E-07 60.2 22.5 135 38-185 32-172 (438)
40 TIGR00883 2A0106 metabolite-pr 97.6 0.0047 1E-07 61.2 18.4 98 87-188 52-154 (394)
41 PRK12382 putative transporter; 97.6 0.018 3.9E-07 57.9 22.7 102 308-416 255-358 (392)
42 PRK10077 xylE D-xylose transpo 97.6 0.026 5.7E-07 58.2 24.3 112 73-184 58-174 (479)
43 PRK15402 multidrug efflux syst 97.6 0.011 2.3E-07 59.9 20.8 118 37-166 14-133 (406)
44 KOG2533 Permease of the major 97.6 0.0032 6.8E-08 66.0 17.0 198 73-284 84-291 (495)
45 PRK03699 putative transporter; 97.5 0.019 4.1E-07 58.0 22.1 95 77-183 49-148 (394)
46 PRK12307 putative sialic acid 97.5 0.035 7.5E-07 56.4 23.8 113 60-184 42-160 (426)
47 TIGR00711 efflux_EmrB drug res 97.5 0.015 3.2E-07 60.1 21.0 108 306-416 295-404 (485)
48 KOG2504 Monocarboxylate transp 97.5 0.0065 1.4E-07 64.0 18.4 102 306-413 337-441 (509)
49 TIGR02332 HpaX 4-hydroxyphenyl 97.5 0.023 5E-07 58.0 22.0 118 58-187 30-153 (412)
50 PRK10642 proline/glycine betai 97.4 0.076 1.6E-06 55.5 25.6 96 87-188 74-176 (490)
51 PRK06814 acylglycerophosphoeth 97.3 0.024 5.1E-07 65.5 21.9 310 74-416 56-390 (1140)
52 PF06609 TRI12: Fungal trichot 97.3 0.033 7.2E-07 59.5 21.1 102 310-416 357-461 (599)
53 TIGR00902 2A0127 phenyl propri 97.3 0.055 1.2E-06 54.4 21.7 99 307-416 245-349 (382)
54 TIGR00887 2A0109 phosphate:H+ 97.3 0.11 2.4E-06 54.3 24.7 110 73-188 59-173 (502)
55 PRK10504 putative transporter; 97.2 0.078 1.7E-06 54.7 22.5 52 365-416 358-409 (471)
56 TIGR00899 2A0120 sugar efflux 97.2 0.09 1.9E-06 52.0 21.6 54 362-416 290-343 (375)
57 PRK11102 bicyclomycin/multidru 97.2 0.096 2.1E-06 52.1 21.7 99 75-185 31-134 (377)
58 TIGR00894 2A0114euk Na(+)-depe 97.1 0.076 1.6E-06 54.8 21.0 102 74-185 80-186 (465)
59 TIGR00792 gph sugar (Glycoside 97.1 0.26 5.5E-06 50.1 24.3 106 306-416 261-374 (437)
60 TIGR00897 2A0118 polyol permea 97.0 0.16 3.6E-06 51.3 22.4 106 306-416 261-370 (402)
61 PRK11128 putative 3-phenylprop 97.0 0.068 1.5E-06 53.7 19.1 56 359-415 292-348 (382)
62 PRK11043 putative transporter; 97.0 0.32 7E-06 48.9 24.0 70 45-114 15-85 (401)
63 PRK11902 ampG muropeptide tran 97.0 0.34 7.3E-06 49.0 24.0 136 40-187 3-151 (402)
64 TIGR00901 2A0125 AmpG-related 97.0 0.049 1.1E-06 53.9 17.3 41 361-401 310-350 (356)
65 PRK14995 methyl viologen resis 96.9 0.18 3.8E-06 52.8 21.7 56 361-416 352-407 (495)
66 TIGR00896 CynX cyanate transpo 96.9 0.15 3.3E-06 50.3 20.2 115 58-185 22-141 (355)
67 PRK15011 sugar efflux transpor 96.9 0.1 2.2E-06 52.6 19.1 52 364-416 309-360 (393)
68 PRK10091 MFS transport protein 96.9 0.29 6.3E-06 49.1 22.1 130 39-184 10-145 (382)
69 PRK03893 putative sialic acid 96.8 0.51 1.1E-05 48.9 23.9 117 58-186 42-164 (496)
70 PRK03633 putative MFS family t 96.7 0.44 9.5E-06 47.7 22.3 101 306-416 239-341 (381)
71 TIGR02718 sider_RhtX_FptX side 96.7 0.68 1.5E-05 46.4 23.8 29 38-66 3-31 (390)
72 PRK10473 multidrug efflux syst 96.5 0.73 1.6E-05 46.2 22.4 105 50-166 17-123 (392)
73 TIGR00882 2A0105 oligosacchari 96.5 0.39 8.5E-06 48.3 20.3 37 74-110 42-78 (396)
74 TIGR01272 gluP glucose/galacto 96.5 0.24 5.2E-06 48.7 17.9 54 134-187 9-67 (310)
75 PRK09705 cynX putative cyanate 96.4 1.3 2.7E-05 44.8 23.4 132 40-184 13-150 (393)
76 TIGR00903 2A0129 major facilit 96.3 0.48 1E-05 47.7 19.7 125 52-188 7-136 (368)
77 PF13347 MFS_2: MFS/sugar tran 96.3 0.73 1.6E-05 47.1 21.1 60 359-418 314-380 (428)
78 KOG2563 Permease of the major 96.2 1.5 3.2E-05 45.2 22.2 128 32-167 41-173 (480)
79 PRK11010 ampG muropeptide tran 96.2 1.2 2.6E-05 46.7 22.7 138 38-187 14-164 (491)
80 PRK09528 lacY galactoside perm 96.2 0.48 1E-05 48.1 19.1 36 361-396 316-351 (420)
81 PRK11646 multidrug resistance 96.2 1.8 3.8E-05 43.9 22.9 53 363-415 300-352 (400)
82 PRK11195 lysophospholipid tran 96.1 1.7 3.7E-05 43.9 22.6 80 72-166 40-120 (393)
83 PRK10054 putative transporter; 96.0 0.82 1.8E-05 46.3 19.6 38 78-115 51-88 (395)
84 TIGR00924 yjdL_sub1_fam amino 96.0 1.5 3.2E-05 45.8 21.8 61 358-418 379-439 (475)
85 TIGR00889 2A0110 nucleoside tr 96.0 0.27 5.9E-06 50.3 15.9 109 305-416 254-365 (418)
86 TIGR00805 oat sodium-independe 95.9 0.7 1.5E-05 50.2 19.7 129 59-187 56-229 (633)
87 KOG2325 Predicted transporter/ 95.8 0.11 2.3E-06 54.2 12.1 130 56-192 55-191 (488)
88 PRK15403 multidrug efflux syst 95.7 2.8 6.2E-05 42.6 24.9 100 75-186 56-160 (413)
89 KOG2532 Permease of the major 95.6 2.1 4.5E-05 44.7 20.9 98 74-181 77-179 (466)
90 PRK10429 melibiose:sodium symp 95.5 0.29 6.4E-06 50.8 14.1 104 51-161 246-350 (473)
91 PF13347 MFS_2: MFS/sugar tran 95.4 0.83 1.8E-05 46.6 16.9 104 48-161 237-341 (428)
92 PRK09952 shikimate transporter 95.4 1.9 4.1E-05 44.3 19.6 92 89-186 83-181 (438)
93 PRK09848 glucuronide transport 95.3 0.49 1.1E-05 48.6 15.0 71 81-161 275-345 (448)
94 PRK09669 putative symporter Ya 95.0 5 0.00011 41.1 24.0 56 362-417 321-383 (444)
95 PRK10207 dipeptide/tripeptide 95.0 5.7 0.00012 41.7 23.2 58 359-416 378-435 (489)
96 PRK15034 nitrate/nitrite trans 94.5 5.5 0.00012 41.6 20.1 78 82-166 82-159 (462)
97 TIGR01301 GPH_sucrose GPH fami 93.9 9.8 0.00021 39.9 23.0 53 361-413 381-435 (477)
98 TIGR00792 gph sugar (Glycoside 93.5 1.4 3E-05 44.7 13.4 101 50-161 236-337 (437)
99 TIGR00806 rfc RFC reduced fola 93.5 5.1 0.00011 42.0 17.3 118 59-188 49-172 (511)
100 KOG0569 Permease of the major 93.4 12 0.00025 39.4 21.1 144 73-231 63-210 (485)
101 PF11700 ATG22: Vacuole efflux 93.0 13 0.00029 38.9 24.1 103 304-409 319-426 (477)
102 PRK09669 putative symporter Ya 93.0 2.5 5.4E-05 43.4 14.4 93 59-161 252-345 (444)
103 PRK15075 citrate-proton sympor 92.9 12 0.00026 38.1 23.2 93 87-185 73-172 (434)
104 PLN00028 nitrate transmembrane 92.9 2.8 6.1E-05 43.6 14.8 30 139-168 352-381 (476)
105 TIGR00788 fbt folate/biopterin 92.6 15 0.00032 38.3 20.7 55 362-416 353-407 (468)
106 TIGR00879 SP MFS transporter, 92.2 0.87 1.9E-05 46.0 9.8 111 303-416 72-183 (481)
107 PTZ00207 hypothetical protein; 91.5 2.9 6.4E-05 45.0 13.1 85 91-181 82-170 (591)
108 PRK10489 enterobactin exporter 91.5 11 0.00023 38.1 16.8 81 76-168 265-346 (417)
109 PF03825 Nuc_H_symport: Nucleo 91.4 18 0.00039 36.9 19.4 49 368-416 309-358 (400)
110 TIGR00902 2A0127 phenyl propri 91.4 5.3 0.00011 40.0 14.3 97 78-186 248-349 (382)
111 cd06174 MFS The Major Facilita 91.4 0.96 2.1E-05 43.6 8.6 109 303-418 35-145 (352)
112 PRK11551 putative 3-hydroxyphe 91.3 2.3 5E-05 42.6 11.7 82 74-167 259-341 (406)
113 KOG3764 Vesicular amine transp 90.9 1.8 3.9E-05 44.1 9.9 91 73-175 106-200 (464)
114 COG2211 MelB Na+/melibiose sym 90.5 24 0.00053 36.8 19.2 56 363-418 330-392 (467)
115 PRK11462 putative transporter; 90.2 9.3 0.0002 39.6 15.2 50 53-102 245-295 (460)
116 KOG0569 Permease of the major 90.0 0.97 2.1E-05 47.3 7.6 117 73-194 308-425 (485)
117 PRK11646 multidrug resistance 89.8 1.1 2.4E-05 45.5 7.7 141 269-416 13-155 (400)
118 TIGR00889 2A0110 nucleoside tr 89.5 10 0.00023 38.6 14.7 105 74-186 255-365 (418)
119 PRK09584 tppB putative tripept 89.5 30 0.00066 36.3 24.1 58 359-416 381-438 (500)
120 TIGR00894 2A0114euk Na(+)-depe 89.4 5.3 0.00011 41.1 12.6 28 39-66 264-292 (465)
121 PRK10406 alpha-ketoglutarate t 89.2 28 0.0006 35.4 23.5 100 85-188 78-182 (432)
122 PRK10213 nepI ribonucleoside t 88.8 3.7 8E-05 41.5 10.7 106 306-417 59-165 (394)
123 TIGR00898 2A0119 cation transp 88.7 2.2 4.8E-05 44.4 9.3 112 301-418 126-238 (505)
124 PRK11102 bicyclomycin/multidru 88.7 3.9 8.6E-05 40.4 10.7 36 75-110 235-270 (377)
125 PRK09528 lacY galactoside perm 88.7 9.6 0.00021 38.5 13.7 78 78-167 270-348 (420)
126 KOG2533 Permease of the major 88.4 6.2 0.00014 41.6 12.3 70 39-108 276-349 (495)
127 TIGR00900 2A0121 H+ Antiporter 88.4 1.9 4.1E-05 41.9 8.1 114 303-418 35-150 (365)
128 PRK10504 putative transporter; 88.4 10 0.00022 39.0 13.8 37 77-113 304-340 (471)
129 KOG3626 Organic anion transpor 88.2 16 0.00035 40.2 15.4 305 40-351 105-487 (735)
130 TIGR00710 efflux_Bcr_CflA drug 87.6 3.1 6.8E-05 41.0 9.2 107 305-417 43-150 (385)
131 PRK11128 putative 3-phenylprop 87.5 13 0.00028 37.1 13.7 77 79-167 249-325 (382)
132 TIGR00895 2A0115 benzoate tran 87.0 3 6.5E-05 41.1 8.6 104 306-416 56-161 (398)
133 TIGR00892 2A0113 monocarboxyla 86.9 18 0.0004 37.2 14.7 29 139-167 337-366 (455)
134 TIGR00891 2A0112 putative sial 86.8 4.3 9.4E-05 40.1 9.8 106 306-417 51-157 (405)
135 PRK12382 putative transporter; 85.6 4.1 8.8E-05 40.7 8.9 148 269-416 18-168 (392)
136 PRK09584 tppB putative tripept 85.1 16 0.00035 38.3 13.4 89 91-182 341-434 (500)
137 PF07690 MFS_1: Major Facilita 84.9 3.6 7.7E-05 39.8 7.9 106 306-418 36-143 (352)
138 PRK15402 multidrug efflux syst 84.9 12 0.00025 37.6 11.9 73 79-158 260-332 (406)
139 PRK09848 glucuronide transport 84.7 49 0.0011 33.7 27.1 54 363-416 322-382 (448)
140 PRK05122 major facilitator sup 84.5 3.7 8.1E-05 41.1 8.0 116 301-416 50-168 (399)
141 PRK10429 melibiose:sodium symp 84.3 55 0.0012 33.9 26.4 54 363-416 327-387 (473)
142 PRK11010 ampG muropeptide tran 83.8 11 0.00023 39.5 11.3 39 145-183 330-369 (491)
143 PF03825 Nuc_H_symport: Nucleo 83.6 29 0.00062 35.4 14.1 139 80-228 253-397 (400)
144 TIGR00886 2A0108 nitrite extru 83.5 5.2 0.00011 39.2 8.4 106 305-416 40-146 (366)
145 TIGR00880 2_A_01_02 Multidrug 83.2 3.1 6.8E-05 33.9 5.8 57 361-417 52-108 (141)
146 PRK10054 putative transporter; 83.2 6.2 0.00013 39.8 9.0 144 268-418 9-154 (395)
147 TIGR00893 2A0114 d-galactonate 83.0 4.2 9.1E-05 39.7 7.5 106 305-417 32-139 (399)
148 PRK08633 2-acyl-glycerophospho 82.9 32 0.00069 39.7 15.7 85 73-169 272-357 (1146)
149 KOG1330 Sugar transporter/spin 82.5 29 0.00064 36.1 13.3 136 71-230 69-213 (493)
150 TIGR00712 glpT glycerol-3-phos 82.4 10 0.00022 38.8 10.3 51 363-413 121-171 (438)
151 TIGR01299 synapt_SV2 synaptic 82.3 4.8 0.0001 44.6 8.3 106 306-417 206-312 (742)
152 TIGR00887 2A0109 phosphate:H+ 82.3 5.8 0.00012 41.5 8.6 113 305-418 59-173 (502)
153 PRK11663 regulatory protein Uh 82.1 8.5 0.00018 39.3 9.6 105 306-416 62-167 (434)
154 KOG4686 Predicted sugar transp 82.0 15 0.00032 36.1 10.3 56 361-416 353-408 (459)
155 TIGR01272 gluP glucose/galacto 81.8 33 0.00071 33.5 13.3 78 75-165 183-261 (310)
156 TIGR02332 HpaX 4-hydroxyphenyl 81.7 6.5 0.00014 39.9 8.5 105 306-416 47-152 (412)
157 PRK15011 sugar efflux transpor 81.1 62 0.0014 32.3 15.7 21 81-101 263-283 (393)
158 PRK11273 glpT sn-glycerol-3-ph 81.0 10 0.00022 39.0 9.8 102 306-409 67-169 (452)
159 PF01306 LacY_symp: LacY proto 80.4 31 0.00068 35.4 12.8 171 39-228 225-403 (412)
160 PRK03545 putative arabinose tr 80.2 11 0.00023 37.7 9.4 57 361-417 98-154 (390)
161 COG2223 NarK Nitrate/nitrite t 80.0 19 0.0004 36.9 10.8 146 30-184 217-367 (417)
162 TIGR00711 efflux_EmrB drug res 80.0 7.6 0.00016 39.8 8.5 104 307-416 42-146 (485)
163 PRK10642 proline/glycine betai 79.9 23 0.00049 36.9 12.1 24 78-101 294-317 (490)
164 PRK10091 MFS transport protein 79.9 8.3 0.00018 38.5 8.5 141 267-414 4-145 (382)
165 PRK03633 putative MFS family t 79.7 7.6 0.00017 38.7 8.1 110 301-416 40-150 (381)
166 PRK09874 drug efflux system pr 79.0 13 0.00027 37.1 9.5 104 306-416 58-162 (408)
167 PRK15403 multidrug efflux syst 78.6 12 0.00026 38.1 9.2 105 306-416 55-160 (413)
168 KOG0252 Inorganic phosphate tr 78.4 21 0.00046 37.2 10.7 81 35-116 37-130 (538)
169 PRK11902 ampG muropeptide tran 77.8 44 0.00095 33.5 13.1 23 144-166 316-339 (402)
170 PRK03699 putative transporter; 77.8 79 0.0017 31.5 18.0 45 58-102 228-273 (394)
171 PRK09952 shikimate transporter 77.5 47 0.001 33.9 13.4 27 141-167 349-376 (438)
172 TIGR00890 2A0111 Oxalate/Forma 76.6 23 0.00051 34.2 10.5 42 74-115 244-285 (377)
173 KOG0255 Synaptic vesicle trans 76.4 1E+02 0.0022 32.1 20.3 55 363-417 409-463 (521)
174 PF07672 MFS_Mycoplasma: Mycop 76.4 27 0.00059 33.5 10.2 224 167-411 7-254 (267)
175 PRK11652 emrD multidrug resist 75.8 18 0.00039 36.0 9.6 104 306-415 47-151 (394)
176 KOG2325 Predicted transporter/ 75.3 8.6 0.00019 40.3 7.1 150 265-417 33-190 (488)
177 KOG0254 Predicted transporter 74.7 70 0.0015 33.5 14.1 82 73-166 92-173 (513)
178 TIGR00880 2_A_01_02 Multidrug 74.6 38 0.00083 27.1 9.9 94 79-184 7-105 (141)
179 PRK10077 xylE D-xylose transpo 74.6 53 0.0011 33.5 12.9 45 74-118 310-354 (479)
180 COG2211 MelB Na+/melibiose sym 74.4 1E+02 0.0022 32.3 14.7 128 51-190 251-380 (467)
181 KOG0255 Synaptic vesicle trans 73.8 17 0.00036 38.1 9.1 113 300-418 116-229 (521)
182 COG2814 AraJ Arabinose efflux 73.7 14 0.00031 37.7 8.1 141 265-412 12-153 (394)
183 PRK10473 multidrug efflux syst 73.7 22 0.00048 35.4 9.6 106 305-416 41-147 (392)
184 PRK06814 acylglycerophosphoeth 73.3 30 0.00064 40.2 11.7 31 138-168 337-368 (1140)
185 PRK11462 putative transporter; 72.8 1.2E+02 0.0026 31.3 25.4 47 139-185 113-165 (460)
186 PRK10207 dipeptide/tripeptide 72.2 1.3E+02 0.0028 31.4 15.3 84 98-183 344-432 (489)
187 KOG3762 Predicted transporter 71.7 23 0.00049 37.7 9.0 162 37-225 376-549 (618)
188 PRK15462 dipeptide/tripeptide 71.6 1.4E+02 0.003 31.5 15.5 132 32-166 263-408 (493)
189 PRK12307 putative sialic acid 71.0 19 0.00041 36.3 8.4 106 305-416 56-162 (426)
190 PF03092 BT1: BT1 family; Int 70.4 1.3E+02 0.0029 30.8 14.6 44 145-188 100-146 (433)
191 TIGR00924 yjdL_sub1_fam amino 69.4 1.3E+02 0.0028 31.3 14.4 146 37-185 273-436 (475)
192 COG0738 FucP Fucose permease [ 68.3 55 0.0012 33.6 10.7 139 37-192 242-381 (422)
193 TIGR00881 2A0104 phosphoglycer 67.7 38 0.00082 32.8 9.6 31 75-105 257-287 (379)
194 KOG3098 Uncharacterized conser 67.5 1.6E+02 0.0036 30.7 15.0 37 134-170 352-389 (461)
195 PRK11195 lysophospholipid tran 67.5 12 0.00025 37.8 6.0 53 364-416 92-144 (393)
196 PRK15034 nitrate/nitrite trans 67.5 49 0.0011 34.6 10.7 107 307-415 75-182 (462)
197 TIGR00882 2A0105 oligosacchari 67.0 86 0.0019 31.2 12.2 73 83-167 267-340 (396)
198 TIGR00883 2A0106 metabolite-pr 67.0 28 0.0006 34.0 8.5 28 140-167 317-345 (394)
199 PF03209 PUCC: PUCC protein; 66.6 98 0.0021 31.7 12.2 143 73-227 247-399 (403)
200 PRK10406 alpha-ketoglutarate t 66.1 47 0.001 33.7 10.3 54 363-416 127-180 (432)
201 PF05978 UNC-93: Ion channel r 65.7 45 0.00098 29.3 8.6 110 300-419 39-148 (156)
202 PF03209 PUCC: PUCC protein; 65.5 1.7E+02 0.0036 30.1 24.2 106 305-415 247-360 (403)
203 KOG3098 Uncharacterized conser 64.7 1.9E+02 0.004 30.3 17.4 51 138-188 105-159 (461)
204 TIGR00885 fucP L-fucose:H+ sym 63.2 43 0.00094 34.0 9.3 57 361-417 95-151 (410)
205 KOG4686 Predicted sugar transp 62.3 1.4E+02 0.0031 29.5 11.8 173 34-226 262-443 (459)
206 PF01306 LacY_symp: LacY proto 62.2 33 0.00071 35.3 8.0 33 359-391 311-343 (412)
207 PRK09556 uhpT sugar phosphate 61.1 12 0.00026 38.6 4.8 56 361-416 123-178 (467)
208 PRK14995 methyl viologen resis 60.0 57 0.0012 33.9 9.7 83 329-417 69-152 (495)
209 PF00083 Sugar_tr: Sugar (and 59.6 2.6 5.6E-05 43.0 -0.5 114 302-418 46-160 (451)
210 PRK03893 putative sialic acid 59.0 52 0.0011 33.8 9.2 105 306-416 59-164 (496)
211 TIGR00899 2A0120 sugar efflux 59.0 1.7E+02 0.0036 28.4 12.4 19 82-100 247-265 (375)
212 TIGR01301 GPH_sucrose GPH fami 58.8 2.4E+02 0.0052 29.6 14.7 92 74-165 309-410 (477)
213 TIGR00901 2A0125 AmpG-related 57.9 44 0.00095 32.6 8.0 54 365-418 88-141 (356)
214 PRK15075 citrate-proton sympor 57.1 1.1E+02 0.0024 31.0 11.1 53 364-416 121-173 (434)
215 PRK11043 putative transporter; 56.8 71 0.0015 31.8 9.5 133 275-414 15-148 (401)
216 KOG2504 Monocarboxylate transp 55.8 80 0.0017 33.4 9.9 75 40-114 299-377 (509)
217 KOG2532 Permease of the major 55.2 56 0.0012 34.2 8.5 177 39-225 261-446 (466)
218 KOG3574 Acetyl-CoA transporter 53.0 2.8E+02 0.0061 28.7 13.7 42 141-182 139-185 (510)
219 PF06813 Nodulin-like: Nodulin 51.8 1.4E+02 0.003 28.5 9.9 144 74-229 41-185 (250)
220 PTZ00207 hypothetical protein; 51.3 2E+02 0.0044 31.0 12.2 44 141-185 458-502 (591)
221 TIGR02718 sider_RhtX_FptX side 50.4 1.8E+02 0.0039 28.8 11.2 29 82-110 256-284 (390)
222 PRK10478 putative PTS system f 47.7 23 0.00049 35.7 4.0 47 141-190 251-298 (359)
223 PRK10133 L-fucose transporter; 46.1 3.4E+02 0.0074 27.7 13.6 79 74-165 299-378 (438)
224 TIGR00806 rfc RFC reduced fola 45.3 73 0.0016 33.6 7.4 59 359-418 114-172 (511)
225 KOG0254 Predicted transporter 44.3 80 0.0017 33.1 7.8 106 306-417 93-199 (513)
226 PF13038 DUF3899: Domain of un 43.0 1.1E+02 0.0023 24.1 6.5 19 262-280 66-84 (92)
227 PF04144 SCAMP: SCAMP family; 42.3 2.5E+02 0.0055 25.1 10.3 58 24-84 21-79 (177)
228 TIGR00897 2A0118 polyol permea 38.9 4E+02 0.0088 26.5 16.6 24 78-101 265-288 (402)
229 PRK11404 putative PTS system 38.3 63 0.0014 34.0 5.7 47 142-191 378-425 (482)
230 PRK13743 conjugal transfer pro 37.7 9.8 0.00021 32.1 -0.3 58 7-64 13-71 (141)
231 PF00083 Sugar_tr: Sugar (and 37.6 1.1 2.4E-05 45.7 -7.4 40 78-117 294-333 (451)
232 TIGR00903 2A0129 major facilit 37.5 1.2E+02 0.0027 30.2 7.6 57 361-418 80-136 (368)
233 PRK09705 cynX putative cyanate 37.4 4.3E+02 0.0092 26.3 16.4 41 74-114 244-284 (393)
234 PF11368 DUF3169: Protein of u 37.2 2.7E+02 0.0058 26.3 9.5 21 168-188 12-32 (248)
235 TIGR00805 oat sodium-independe 36.2 46 0.00099 36.2 4.5 54 363-416 175-228 (633)
236 TIGR00896 CynX cyanate transpo 31.2 4.9E+02 0.011 25.1 12.0 41 74-114 236-277 (355)
237 TIGR00788 fbt folate/biopterin 30.8 96 0.0021 32.2 5.7 41 74-114 292-332 (468)
238 PRK10297 PTS system N,N'-diace 30.5 64 0.0014 33.6 4.3 25 211-240 412-436 (452)
239 PF02487 CLN3: CLN3 protein; 29.3 6.4E+02 0.014 25.9 13.3 106 73-189 284-394 (402)
240 KOG2816 Predicted transporter 27.4 1.6E+02 0.0035 30.7 6.7 50 369-418 119-170 (463)
241 PF06912 DUF1275: Protein of u 26.8 4.8E+02 0.01 23.6 12.3 110 95-223 74-184 (209)
242 KOG3088 Secretory carrier memb 26.0 4E+02 0.0086 26.0 8.2 52 173-236 221-272 (313)
243 PF10587 EF-1_beta_acid: Eukar 25.0 30 0.00066 21.2 0.4 6 10-15 3-8 (28)
244 PF03137 OATP: Organic Anion T 24.9 23 0.00051 37.7 -0.1 36 72-108 40-75 (539)
245 PF03547 Mem_trans: Membrane t 24.7 6.9E+02 0.015 24.7 12.3 42 308-351 285-326 (385)
246 PRK15462 dipeptide/tripeptide 23.6 8.8E+02 0.019 25.5 13.5 40 76-115 51-91 (493)
247 TIGR02230 ATPase_gene1 F0F1-AT 22.5 1.9E+02 0.0042 23.5 4.8 48 42-92 40-93 (100)
248 PF05977 MFS_3: Transmembrane 22.2 9.5E+02 0.021 25.4 15.0 83 73-167 257-340 (524)
249 COG4769 Predicted membrane pro 21.4 2.9E+02 0.0062 24.7 5.9 49 142-191 79-127 (181)
250 PRK01021 lpxB lipid-A-disaccha 21.4 2.1E+02 0.0044 31.1 6.0 70 157-229 123-195 (608)
251 PF03522 KCl_Cotrans_1: K-Cl C 21.1 43 0.00094 20.7 0.6 12 10-21 14-25 (30)
252 TIGR02865 spore_II_E stage II 20.5 1.1E+03 0.024 26.3 11.9 13 216-228 270-282 (764)
253 KOG2615 Permease of the major 20.4 9.7E+02 0.021 24.8 19.7 53 341-397 337-389 (451)
No 1
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-77 Score=593.53 Aligned_cols=390 Identities=39% Similarity=0.681 Sum_probs=335.6
Q ss_pred CCCCCCCccchhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehh
Q 014641 26 HQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINV 105 (421)
Q Consensus 26 ~~~~p~d~~~l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 105 (421)
++.+|+|+++.+|+.|+++|+|+|+|||+++|+.|||.++||+++..+.|+..|++.+.+..++...+.-+.+.|.|...
T Consensus 8 ~~~~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~ 87 (406)
T KOG1479|consen 8 DSPEPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRV 87 (406)
T ss_pred cCCCcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998776666666655555555544444333333355555
Q ss_pred HHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHH
Q 014641 106 GLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 106 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll 185 (421)
+..+..+..+++++++.++.+++.|...+|.+++++++..|.++|+.|||++|+++.||++|+||+|+||++||+++|++
T Consensus 88 ~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~ 167 (406)
T KOG1479|consen 88 GYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLL 167 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHH
Confidence 55555444545555566666678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhh----hhhhhhccCCCCcccchhH
Q 014641 186 RILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAV----NEEKEEKGSLTGSMWRSAV 261 (421)
Q Consensus 186 ~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~~~~ 261 (421)
|+++|++.+|+ ++++.+||+++.++.++|+++|..++|+|++|||++++.++. +++.|+|++.++. ..+.
T Consensus 168 ~i~tka~~~~~----~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 241 (406)
T KOG1479|consen 168 RILTKAAFSDS----RTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNE--DDSL 241 (406)
T ss_pred HHHHHHhcCCC----CceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccc--cchH
Confidence 99999998654 488999999999999999999999999999999988765431 1222333333222 2289
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHH-HHhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 014641 262 WHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAG-YNVFDLVGKSLTAIYLLENEKVAIGGCFAR 340 (421)
Q Consensus 262 ~~v~k~i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~-fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R 340 (421)
|+++||+|+++++++++|++|+++|||+.++..+++..++|++.+...+ ||++|++||.++.+++++++|.+++++++|
T Consensus 242 ~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR 321 (406)
T KOG1479|consen 242 WDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLR 321 (406)
T ss_pred HHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHH
Confidence 9999999999999999999999999999877555555679999888888 999999999999999999999999999999
Q ss_pred HHHHhhhhccccC--CcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 341 LLFFPLFLGCLHG--PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 341 ~~fiplf~~~~~~--p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
++|+|+|.+||+. |.++++|+++++++.++|+||||+++++|++||++++++|||.||++|++++..|+++|+++|++
T Consensus 322 ~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 322 LLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred HHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999984 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 014641 419 WVI 421 (421)
Q Consensus 419 ~~~ 421 (421)
|.+
T Consensus 402 ~~~ 404 (406)
T KOG1479|consen 402 FVI 404 (406)
T ss_pred HHH
Confidence 974
No 2
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=3.1e-73 Score=580.69 Aligned_cols=375 Identities=35% Similarity=0.591 Sum_probs=321.7
Q ss_pred HHHHhhhhhhHHHHHhchHHHhhcccCCCc---------------cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehh
Q 014641 41 YFTLGLGFLLPWNAFITAVDYFSYLYPEAS---------------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINV 105 (421)
Q Consensus 41 f~llG~~~LlpwN~~ita~dyf~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 105 (421)
|+++|+|+|+|||+++||.|||+++|++++ ++++++++.++++++..+.+.++.+|+|.+.|+..
T Consensus 1 f~llG~~~L~pWN~fitA~~Yf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~ 80 (437)
T TIGR00939 1 FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLG 80 (437)
T ss_pred CEEEeeeccchhHHHhhHHHHHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHH
Confidence 578999999999999999999999876531 34567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHH
Q 014641 106 GLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 106 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll 185 (421)
++++.++.+++..++ +..+ .++..+|+++|+++++.|+++|+.|++.+|+++.||++|+|++|+|||+||++++++
T Consensus 81 ~lv~~~~~~~~~~~l--~~~~--~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 81 GLVILLVVVILVMVL--VKVQ--TSETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHhhe--eeec--CCcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHH
Confidence 999887777665443 3333 234468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhh----hh------hhhhhh-------
Q 014641 186 RILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ----AV------NEEKEE------- 248 (421)
Q Consensus 186 ~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~----~~------~e~~~~------- 248 (421)
|++++++.+++. +.++++++||+++++++++|+++|..++|+|++|||++++.+ ++ .+++|+
T Consensus 157 ~ii~~a~~~~~~-~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
T TIGR00939 157 MILVKASGNDSH-GLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGG 235 (437)
T ss_pred HHHHHHhcCCcc-chhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhccccccccccccccccccccccccccc
Confidence 999999877655 789999999999999999999999999999999999765321 00 000010
Q ss_pred c--cC------------CC--CcccchhHHHHHHHHHHHHHHHHHHHhhhhhcccceeeecccccC-CCc-hHHHHHHHH
Q 014641 249 K--GS------------LT--GSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEI-LKD-WYGIILIAG 310 (421)
Q Consensus 249 ~--~~------------~~--~~~~~~~~~~v~k~i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~-~~~-w~~~i~~~~ 310 (421)
+ +. .+ +.+.+.++|+++||+|++++++|++|++|+++|||++.....++. .++ |++++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~ 315 (437)
T TIGR00939 236 DQPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLL 315 (437)
T ss_pred ccccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHH
Confidence 0 00 00 012357899999999999999999999999999999876443332 344 699999999
Q ss_pred HHhhhhhhhhhhhhhhccCch--hHHHHHHHHHHHHhhhhccccCC-----cccccchhHHHHHHHHhhhccccchheee
Q 014641 311 YNVFDLVGKSLTAIYLLENEK--VAIGGCFARLLFFPLFLGCLHGP-----KFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 311 fn~gD~iGR~~~~~~~~~~~~--~l~~ls~~R~~fiplf~~~~~~p-----~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
||+||++||.++.+..++++| ++++++++|++|||+|++||++| .++++|+++++++++||+||||++|++|+
T Consensus 316 fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~ 395 (437)
T TIGR00939 316 FNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMC 395 (437)
T ss_pred HHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999888776655 88999999999999999999875 37899999999999999999999999999
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 420 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~~~ 420 (421)
++|++++++|||.||++|++++++|+++||.+|+++.
T Consensus 396 ~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 396 LAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874
No 3
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=6.4e-58 Score=450.03 Aligned_cols=277 Identities=33% Similarity=0.591 Sum_probs=4.0
Q ss_pred HHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHH
Q 014641 139 VGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVIC 218 (421)
Q Consensus 139 l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~ 218 (421)
|+.+++.|+++|+.|++++|+++.+|++|+|++|+|||+||++++++|+++++..++ .+.++++||++++++.++|
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~----~~~~a~~yF~~a~~i~i~~ 76 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSD----VKTSAFIYFIIAVLIVILC 76 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhc----cchhhhhHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999998643 7889999999999999999
Q ss_pred HHHHHHhccchhhHHHHhhhhh----hhhhhh-----hhc-cCCC----Cc-----ccchhHHHHHHHHHHHHHHHHHHH
Q 014641 219 IVFYNVAHRLPVIKYHEDLKIQ----AVNEEK-----EEK-GSLT----GS-----MWRSAVWHIVGRVKWYGFGILLIY 279 (421)
Q Consensus 219 ~~~~~~l~r~p~~~~~~~~~~~----~~~e~~-----~~~-~~~~----~~-----~~~~~~~~v~k~i~~~~l~~fl~f 279 (421)
+++|..+.|+|++|+|.+++.+ +.+|+. +++ ++.+ .+ ....++++++|++|+++++++++|
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~f 156 (309)
T PF01733_consen 77 IILYFILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLVF 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776511 111110 000 0000 00 012357889999999999999999
Q ss_pred hhhhhcccceeeeccccc---CCCchH-HHHHHHHHHhhhhhhhhhhhhhhcc--CchhHHHHHHHHHHHHhhhhccccC
Q 014641 280 IVTLSIFPGYITEDVHSE---ILKDWY-GIILIAGYNVFDLVGKSLTAIYLLE--NEKVAIGGCFARLLFFPLFLGCLHG 353 (421)
Q Consensus 280 ~vTl~vFP~i~~~~~~~~---~~~~w~-~~i~~~~fn~gD~iGR~~~~~~~~~--~~~~l~~ls~~R~~fiplf~~~~~~ 353 (421)
++|+++||+++.. .++. ..++|+ |++++++||+||++||.++.+.+++ ++|++++++++|++|+|+|++||++
T Consensus 157 ~vTl~~FP~it~~-v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~ 235 (309)
T PF01733_consen 157 FVTLSVFPGITSA-VQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQ 235 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hheeeeccceeee-eeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999543 3322 123355 4689999999999999999999887 7889999999999999999999976
Q ss_pred C------cccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 014641 354 P------KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 420 (421)
Q Consensus 354 p------~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~~~ 420 (421)
| .+++||+++++++++||+||||++|++|+++|++++++|||.||++|++++++|+++||++|+++.
T Consensus 236 p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~~ 308 (309)
T PF01733_consen 236 PRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLLV 308 (309)
T ss_dssp -------------------------------HHHH--------------------------------------
T ss_pred cccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 368999999999999999999999999999999999999999999999999999999999999885
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.97 E-value=7e-31 Score=262.64 Aligned_cols=358 Identities=16% Similarity=0.189 Sum_probs=261.1
Q ss_pred hhHHHHHHhhhhhhHHHHHhch-HHHhhccc------------C------------CCccchhhHHHHHHHHHHHHHHHH
Q 014641 37 AYIIYFTLGLGFLLPWNAFITA-VDYFSYLY------------P------------EASVDRIFAVAYMLVGLFCLVIIV 91 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita-~dyf~~~~------------~------------~~~~~~~~~~~~~~~~l~~~~~~~ 91 (421)
+|+.|+++|+.++++|..+++| .|--+++- | +.-......++..+|.++..++++
T Consensus 1 ~~~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP 80 (402)
T PF02487_consen 1 NYVAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAP 80 (402)
T ss_pred ChhHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhH
Confidence 3789999999999999999996 57766321 1 000123478899999999999999
Q ss_pred HhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHH
Q 014641 92 FYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQAL 171 (421)
Q Consensus 92 ~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~ 171 (421)
++.||+|++.|+..+..++.++++.+.. .+ ..++.++.+++.|+++|+.|.+++++++.+|+..+++|
T Consensus 81 ~fi~~v~y~~Ri~~~~~l~~~g~l~va~-----~~-------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~~l~~w 148 (402)
T PF02487_consen 81 FFIHRVPYWIRILICVALSAAGMLLVAF-----SP-------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKSSLSAW 148 (402)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhheee-----cc-------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCccccccc
Confidence 9999999999999999999888876432 11 33678999999999999999999999999999999999
Q ss_pred HccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhH-HHHhhhhhh-hhhhh-hh
Q 014641 172 VAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIK-YHEDLKIQA-VNEEK-EE 248 (421)
Q Consensus 172 ~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~-~~~~~~~~~-~~e~~-~~ 248 (421)
.+|+|.||+++++++...+.. .-+++. ++ ++..++.++-.++|+++.+.|-.+ .+.+.+..+ .+|+. ++
T Consensus 149 ssGTG~aGl~Ga~~y~~lT~~----g~s~~~-tl---l~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (402)
T PF02487_consen 149 SSGTGGAGLVGALYYLGLTTL----GLSPRT-TL---LIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLES 220 (402)
T ss_pred cCCcChhhHHHHHHHHHHHHh----CcCHHH-HH---HHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccccccccc
Confidence 999999999999999885542 122332 22 334455555556666654443222 111111000 00000 00
Q ss_pred c-----cCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhhcccceeeec--cc-ccCCCchHHHHHHHHHHhhhhhhhh
Q 014641 249 K-----GSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITED--VH-SEILKDWYGIILIAGYNVFDLVGKS 320 (421)
Q Consensus 249 ~-----~~~~~~~~~~~~~~v~k~i~~~~l~~fl~f~vTl~vFP~i~~~~--~~-~~~~~~w~~~i~~~~fn~gD~iGR~ 320 (421)
+ .+...+....+.++..|+..++++.++++|+.++.+-+|+.+.. +. .....++|+ ..-++||+|.|++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~-~Y~~~YQ~GVFISRS 299 (402)
T PF02487_consen 221 ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYR-WYQLLYQLGVFISRS 299 (402)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHH-HHHHHHHHHHhhhhc
Confidence 0 00000111234556778777799999999999999888874321 11 122345554 456799999999999
Q ss_pred hhhhhhccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHH
Q 014641 321 LTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV 400 (421)
Q Consensus 321 ~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~ 400 (421)
...+.+. |++|++++++++...++++ +.-.+++++.|..+++++.-|+.+|-...+++....++++++|||.+.++
T Consensus 300 S~~~~ri---r~lwils~LQ~~nl~~~~l-~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~ 375 (402)
T PF02487_consen 300 SLPFFRI---RRLWILSLLQVINLVFLLL-QSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGA 375 (402)
T ss_pred ceeeeeh---hhHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9876644 6789999999887765433 22123677878888999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014641 401 IVLFLVLGLAAGSIVAWFW 419 (421)
Q Consensus 401 ~~~~l~~Gl~~Gs~~s~~~ 419 (421)
.+++.+.|+.+++++++.+
T Consensus 376 vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 376 VSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999763
No 5
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=99.93 E-value=6.8e-26 Score=214.09 Aligned_cols=352 Identities=15% Similarity=0.167 Sum_probs=251.6
Q ss_pred hhHHHHHHhhhhhhHHHHHhchH-HHhhcccCCCc--------------c-chhhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAV-DYFSYLYPEAS--------------V-DRIFAVAYMLVGLFCLVIIVFYAHKSDAW 100 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~-dyf~~~~~~~~--------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 100 (421)
.+++|+++|++++..|..+++|. |-..++-++.. . .....++.++|+++..+..+++.||+++.
T Consensus 13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~ 92 (409)
T KOG3880|consen 13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG 92 (409)
T ss_pred cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence 78999999999999999999974 66665543210 1 34677899999999999999999999999
Q ss_pred eEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhh
Q 014641 101 VRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGV 180 (421)
Q Consensus 101 ~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv 180 (421)
.|+.....+.+.++.++ .+.+ .-..+|..+++.++++|+.|-+++++++.+|+.-...|++|+|.||+
T Consensus 93 ~Ri~~~v~~sa~s~~lV-----afs~-------s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~~i~~WSSGTGgAGl 160 (409)
T KOG3880|consen 93 FRIALVVLLSALSFFLV-----AFSN-------SVPMSLLGVVFASISSGLGEITFLALSSRYPSIVIAGWSSGTGGAGL 160 (409)
T ss_pred hHHHHHHHHHhcceEEE-----Eecc-------chhHHHhhhhhhhhcCCcceeehhhhhccCCCceeccccCCCCcchh
Confidence 99988887777766543 2332 22458889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhh-hhhhh-------hhhhccCC
Q 014641 181 LVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKI-QAVNE-------EKEEKGSL 252 (421)
Q Consensus 181 ~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~-~~~~e-------~~~~~~~~ 252 (421)
+++..+...+-.. .-+++. +. ++...+..+-.++|+++.|.|-..+-...+. .+..+ ..|+++
T Consensus 161 iGa~SYa~lT~~~---~~spk~-Tl---li~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~~~~~~a~e~~s-- 231 (409)
T KOG3880|consen 161 IGASSYAFLTSWA---NLSPKS-TL---LIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQYLPFEAAEEKS-- 231 (409)
T ss_pred hhhhHHHHHhhhc---CCChhh-HH---HHHHHHHHHHHHHHHheeCCCccccCCCcCccceeccCCCCccccccccc--
Confidence 9999988754422 223433 33 3334455566678888777765543111100 00000 001110
Q ss_pred CCcccchhHH---HHHHHHHHHHHHHHHHHhhhhhcccceee-------ec-ccc-cCCCchHHHHHHHHHHhhhhhhhh
Q 014641 253 TGSMWRSAVW---HIVGRVKWYGFGILLIYIVTLSIFPGYIT-------ED-VHS-EILKDWYGIILIAGYNVFDLVGKS 320 (421)
Q Consensus 253 ~~~~~~~~~~---~v~k~i~~~~l~~fl~f~vTl~vFP~i~~-------~~-~~~-~~~~~w~~~i~~~~fn~gD~iGR~ 320 (421)
..+.+...+ +.+|...++++.++++|+-++.+--|+.. .. ..+ +....||++ .||+|.|++|+
T Consensus 232 -v~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqv----lYQlGVFiSRS 306 (409)
T KOG3880|consen 232 -VPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQV----LYQLGVFISRS 306 (409)
T ss_pred -CchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhe----eeeeeEEEEec
Confidence 011122233 34444455899999999987766444321 11 111 112468875 89999999999
Q ss_pred hhhhhhccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHH
Q 014641 321 LTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV 400 (421)
Q Consensus 321 ~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~ 400 (421)
..+....| .+|.+.+++++....|++-.. -.+.++.|..+++++.-|+-+|-...+.+-...+++++++||.|...
T Consensus 307 S~~~~~~p---~l~~LailQ~vNl~ff~~~a~-~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsa 382 (409)
T KOG3880|consen 307 SINLFTMP---YLWLLAILQFVNLLFFLLQAW-YWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSA 382 (409)
T ss_pred cceEEech---HHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhh
Confidence 98887665 778899999877765544211 12455667778888888999998888888777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014641 401 IVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 401 ~~~~l~~Gl~~Gs~~s~~ 418 (421)
.+.+.+.|+.+.+.+|+-
T Consensus 383 vs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 383 VSISDSIGIFLAGLLALP 400 (409)
T ss_pred heecchhhHHHHHHHhcc
Confidence 999999999999998863
No 6
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.56 E-value=5.5e-06 Score=81.84 Aligned_cols=339 Identities=14% Similarity=0.134 Sum_probs=155.7
Q ss_pred hHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
..++.+-.+.+++.+.+.-+. ....+...+.+...+.....-.+.+|.+.|.-+..+..+..++.+..... +
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h--
Confidence 345555555666666554322 22344556666666667776777888887776666666665555443321 1
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHH-HHHHHHHHhcccCccchhh
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVS-VLRILTKAVYTQDAIGLRK 202 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~s-ll~ii~~~~~~~~~~~~~~ 202 (421)
.++..++..++.|++.+.......++.+ .+|++. .+.+..++.++++++. ++....... .+-+
T Consensus 82 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~- 150 (379)
T TIGR00881 82 -----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWH- 150 (379)
T ss_pred -----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCch-
Confidence 2334455666778888887777776655 466543 3445666777777766 222221111 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhccCCC--C-cccchhHHHHHH--HHHHHHHHHHH
Q 014641 203 SANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLT--G-SMWRSAVWHIVG--RVKWYGFGILL 277 (421)
Q Consensus 203 ~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~--~-~~~~~~~~~v~k--~i~~~~l~~fl 277 (421)
..|...+.+..+.++..+...++.|..+...+.+ ++.+++.+++.+.+ . +..+...++.+| ..|...+..++
T Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
T TIGR00881 151 --WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAE-EMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227 (379)
T ss_pred --hHHHHHHHHHHHHHHHHheeeCCCccccccCccc-cCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence 2233333333333444443344333221100000 00001000000000 0 011122333333 34444444444
Q ss_pred HHhhhhh---cccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc--cCchh-HHHHHHHHHHHHhhhhccc
Q 014641 278 IYIVTLS---IFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL--ENEKV-AIGGCFARLLFFPLFLGCL 351 (421)
Q Consensus 278 ~f~vTl~---vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~--~~~~~-l~~ls~~R~~fiplf~~~~ 351 (421)
.+..... ..|.+..+ ....+.-........++++..+|+.+..+... .++++ .......=.....+.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 228 VYVVRTGILDWSPLYLTQ---EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4433221 23332211 11112222335567888999999988765332 12222 2111111111111111111
Q ss_pred cCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 014641 352 HGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 352 ~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
. + ..+.+..++..+++|+..+-..........+..++++|..+..+.+..-.+|..+|..+
T Consensus 305 ~-~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 365 (379)
T TIGR00881 305 N-P--AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365 (379)
T ss_pred C-c--chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhh
Confidence 1 1 11223334445555653322222222334566677888888888888888887777654
No 7
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.52 E-value=2e-05 Score=77.86 Aligned_cols=335 Identities=13% Similarity=0.013 Sum_probs=152.6
Q ss_pred HHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcc
Q 014641 54 AFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY 132 (421)
Q Consensus 54 ~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 132 (421)
.+-.+.+++++.+.-++ ........+.+...+.....-.+.+|...|.-+..+.++..+........ +
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~------ 80 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G------ 80 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c------
Confidence 33344455565554322 22345556667777777777777788876666666665555444433221 1
Q ss_pred hhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHH
Q 014641 133 DGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLY 207 (421)
Q Consensus 133 ~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~y 207 (421)
.+...++...+.|++.+........+.+ .+|++ ..+....+.+++++++..+.-..... .+. ...|
T Consensus 81 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~---~~~~ 151 (399)
T TIGR00893 81 -AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSW---QWAF 151 (399)
T ss_pred -CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCc---hHHH
Confidence 2333455667788888887777777665 46654 34556667777777665544322111 111 1223
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhh-hhhhhhc--cCCCCcccchhHHHHHH--HHHHHHHHHHHHHhhh
Q 014641 208 FAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAV-NEEKEEK--GSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIVT 282 (421)
Q Consensus 208 F~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~-~e~~~~~--~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~vT 282 (421)
...+....+.++..+...++.|..+...+.++++. .++..++ .+.+.++.+.+.++.+| +.|...+..++..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (399)
T TIGR00893 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGL 231 (399)
T ss_pred HHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHH
Confidence 33333333333333333443332111000000000 0000000 01111112233444443 3444444433333322
Q ss_pred h---hcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc-cCchh--HHH-HHHHHHH---HHhhhhcccc
Q 014641 283 L---SIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKV--AIG-GCFARLL---FFPLFLGCLH 352 (421)
Q Consensus 283 l---~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~--l~~-ls~~R~~---fiplf~~~~~ 352 (421)
. ..+|.+..+ ....+....-.....+.++..+|+....+... ..+|+ +.. ....-.. ........+.
T Consensus 232 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399)
T TIGR00893 232 GFFLTWFPTYLVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY 308 (399)
T ss_pred HHHHHHHHHHHHH---HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 123332211 11111222234456677777888777654322 11221 111 0010011 1111111111
Q ss_pred CCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 353 GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 353 ~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+.+.......+.++..| .......+..+..++++|..+..+......+|-.+|..+.
T Consensus 309 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~ 367 (399)
T TIGR00893 309 ----VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI 367 (399)
T ss_pred ----chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 1122333333444455555 5566666677778888898888888888788877776543
No 8
>TIGR00895 2A0115 benzoate transport.
Probab=98.45 E-value=3.4e-05 Score=76.84 Aligned_cols=106 Identities=17% Similarity=-0.001 Sum_probs=64.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~~-~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
......++++..+|+.+..+... .++|........-.+...+... . ..+.+...+..+++|+..|-.....+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (398)
T TIGR00895 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T-----LFSPTLLLLLGAIAGFFVNGGQSGLYA 361 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H-----hhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999988765433 2333322222211111111111 1 123344566677788888777666677
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+..++++|..+-.++.....+|..+|..+.
T Consensus 362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 777878888898888888877788888887654
No 9
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.39 E-value=0.00012 Score=72.27 Aligned_cols=335 Identities=11% Similarity=0.099 Sum_probs=150.8
Q ss_pred hhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 36 LAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 36 l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
.+-..++...+....-+ .+-...++..+.+.-++ ........+.+...+.....-.+.+|+..|.-+..+.++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~ 82 (377)
T TIGR00890 4 YVLVGTVIMCFTSGYVY-TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF 82 (377)
T ss_pred EEeHHHHHHHHHhhHHh-hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHH
Confidence 33344444444443322 22223445555443222 12334445566666666666666777776666666666665555
Q ss_pred HHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCH---HHHHHHHccccchhhHHH-HHHHHH
Q 014641 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPD---RYMQALVAGTAGSGVLVS-VLRILT 189 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~---~~~~a~~~G~g~aGv~~s-ll~ii~ 189 (421)
+..... + .+...++.-.+.|++.+....+....... +|+ +..+....|.++++++.. +...+.
T Consensus 83 ~~~~~~-----~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (377)
T TIGR00890 83 TFYAIA-----D-------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVI 150 (377)
T ss_pred HHHHHH-----H-------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHH
Confidence 433321 1 22333444457777777665555544432 443 345666777777765433 222111
Q ss_pred HHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--H
Q 014641 190 KAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--R 267 (421)
Q Consensus 190 ~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~ 267 (421)
. ..+- ...|...+....+.++..+..+++.|..+ . + + +++. ++++.+.++.+| +
T Consensus 151 ~------~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~--~---~--~~~~----~~~~~~~~~~~~~~~ 206 (377)
T TIGR00890 151 N------LEGV---PAAFIYMGIIFLLVIVLGAFLIGYPPGQL----I--K---T--NIEV----SVKDYTVWEMLRTPQ 206 (377)
T ss_pred h------cccH---HHHHHHHHHHHHHHHHHHHHheecCchhc----c--c---c--Cccc----chhhhhHHHHHcCcc
Confidence 1 1111 12222333333333333333333222100 0 0 0 0000 001112333443 2
Q ss_pred HHHHHHHHHHHHhhhh---hcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHH-HHHHHHH
Q 014641 268 VKWYGFGILLIYIVTL---SIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLL 342 (421)
Q Consensus 268 i~~~~l~~fl~f~vTl---~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~-ls~~R~~ 342 (421)
.|...+..++..+... ..+|.+. +....++.........+++++.+||....+.. +.++|+... ..+.-.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG----QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAV 282 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3333333333222211 1122211 11112233334567788999999998876533 223333322 2221111
Q ss_pred HHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 343 FFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 343 fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
...++.. . +.. +.+..+...++.|+..|-..+....+.++..++++|..+-.+......+|..+|..+.
T Consensus 283 ~~~~~~~--~-~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 283 GMAAMLF--I-PML--NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHH--c-ccc--hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 1111111 1 111 1223334456677777766555444556666777888877777777777777776543
No 10
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.35 E-value=9.8e-05 Score=72.57 Aligned_cols=309 Identities=14% Similarity=0.031 Sum_probs=147.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
......+.+...+.....-.+.+|+..|.-+..+.++..+..+..+.... .+ . ..++..++...+.|++.+..
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL--LG----G-LNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH--cC----C-CcHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666777777555445555444444443333221 11 0 13344555667788888888
Q ss_pred hchhhhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 153 QGGLIGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 153 qss~~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
.....++.+. .|++ ..+....+.+++++++..+.-...... +. ...| .+..+..+++.+....+ |
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-----g~---~~~~-~~~~~~~~~~~~~~~~~-~ 179 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-----GI---KWAI-WVDAVGFAISALLIVSV-R 179 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----hH---HHHH-HHHHHHHHHHHHHHHhc-c
Confidence 8877777664 5543 234455666666666555433321111 11 1122 22222222232222222 2
Q ss_pred chhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--HHHHHHHHHHHHHhhh---h-hcccceeeecccccCCCc
Q 014641 228 LPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIVT---L-SIFPGYITEDVHSEILKD 301 (421)
Q Consensus 228 ~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~vT---l-~vFP~i~~~~~~~~~~~~ 301 (421)
.|..+ .+++ ++.+++ . .++.++..+.++| ..|...+..++..+.. . ..+|.+..+ . ...+.
T Consensus 180 ~~~~~----~~~~---~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~ 246 (365)
T TIGR00900 180 IPELA----ASEI---QALSNA-V--LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK-Y--LGRGS 246 (365)
T ss_pred cccCC----Cccc---cccchh-H--HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H--hCCch
Confidence 11100 0000 000000 0 0001122333333 2333333222222222 1 334544221 1 11122
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 302 WYGIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 302 w~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
...-.....++++..+|+....+... .++++....+.. ...+.++..... +. +.+..++..+++|+..|.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~g~~~~~~~~~ 321 (365)
T TIGR00900 247 THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF-VIGLAILVVGLT-PP---NFPLFLVLWFAIGVGYGPINVP 321 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhh-ch---hHHHHHHHHHHHHHHHHHHHHH
Confidence 22335567788999999888654332 233333222110 111111111111 11 1244566778889988877777
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
...+..+.+++++|..+..+.......|..+|..++
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777878888898888888888888887777654
No 11
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.34 E-value=5.5e-05 Score=78.41 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc---cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 304 GIILIAGYNVFDLVGKSLTAIYLL---ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 304 ~~i~~~~fn~gD~iGR~~~~~~~~---~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
.-....++.+++.++|.+..+... .++++......+-+.....++++.. ..+.+..++..+++|+.+|-....
T Consensus 278 ~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 278 AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVIYCIFFGLSFGSVGAL 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhchHHHH
Confidence 345567788999998877655432 1223222222222222222222211 123344566788899998888777
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+....+.++++++..+..+......+|-.+|..++
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 666667777788888888888887788877776543
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.23 E-value=0.00024 Score=71.83 Aligned_cols=301 Identities=17% Similarity=0.085 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
......+.+...+.....-.+.+|+..|.-+..+..+..+..+.... .+ .+...++..++.|++.+..
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~l~G~~~~~~ 120 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ-----AW-------DFPSLLVARLLTGVGLGGA 120 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----hc-------cHHHHHHHHHHHHhhHHHH
Confidence 34445556666666666667777877666566555554444332221 11 2334455667778887776
Q ss_pred hchhhhhcC-CCCHHH----HHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 153 QGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 153 qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
.....++.. .+|++. ++-...|..+++.++..+.... .+ ..+ . ...|...+++..+.++.....+++
T Consensus 121 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~ 192 (406)
T PRK11551 121 LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA---AG--DAA--W-RHIFYVGGVGPLLLVPLLMRWLPE 192 (406)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc--ccC--H-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666655544 566543 3344556666666665543221 11 111 1 122333233222333333333444
Q ss_pred chhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHH--HHHHHHHHHHHHHH---HHhhhhhcccceeeecccccCCCch
Q 014641 228 LPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWH--IVGRVKWYGFGILL---IYIVTLSIFPGYITEDVHSEILKDW 302 (421)
Q Consensus 228 ~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~--v~k~i~~~~l~~fl---~f~vTl~vFP~i~~~~~~~~~~~~w 302 (421)
.|..+ +.+. +++++++ .....++ ..++.+...+..++ .+.......|-+... ...+..
T Consensus 193 ~~~~~---~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~g~s~~ 255 (406)
T PRK11551 193 SRAFA---QAAG----AGKQRAP------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG----QGLSRS 255 (406)
T ss_pred ChhHH---hccC----cchhhhh------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCChh
Confidence 33211 0000 0000000 0000000 01111211122112 111112223433211 111122
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 303 YGIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
..-.....++++..+|+....+... .++|+.+.....-.. +-++.+ .. .++.+...+..+++|+..+-..+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (406)
T PRK11551 256 QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL-ASLAAL-AA----APSFAGMLLAGFAAGLFVVGGQSVL 329 (406)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHH-Hh----cCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 2234567888999999998765432 233443322211111 111111 11 1122334455566676654445555
Q ss_pred eeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+...++..++++|..+..+......+|..+|..+.
T Consensus 330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 56677778888888888777777777777776653
No 13
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.23 E-value=0.00039 Score=70.73 Aligned_cols=303 Identities=14% Similarity=0.013 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
......+.++..+.....-.+.+|++.|.-+..+..+..+.++.+..... .. . ..++..++..++.|++.+..
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--~~--~---~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF--LP--E---PSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH--cC--C---CcHHHHHHHHHHHHHHHHHH
Confidence 45555666777777777677778888777677666665555443332111 11 0 12333445566667777776
Q ss_pred hchhhhhcC-CCCHHHH----HHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 153 QGGLIGAAG-ELPDRYM----QALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 153 qss~~~la~-~fp~~~~----~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
.....+... ..|++.. +....+.+++.+++..+.-...... +.+ ..| .+..+..+++.+....+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-----~~~---~~~-~~~~~~~~~~~~~~~~l~~ 198 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-----GVA---WNY-GLAAAGTFITLLPLLRLPA 198 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-----hhH---HHH-HHHHHHHHHHHHHHHhCCC
Confidence 666555544 4565442 2333455555555554432221111 111 222 2223333333333333332
Q ss_pred chhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--HHHHHHHHHHHHHh--hhhhcccceeeecccccCCCchH
Q 014641 228 LPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYI--VTLSIFPGYITEDVHSEILKDWY 303 (421)
Q Consensus 228 ~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~--vTl~vFP~i~~~~~~~~~~~~w~ 303 (421)
.+. +.+ + ++ +.. ++.++..+.+.| ..+...+..++..+ .....+|.+..+ . ...+.-.
T Consensus 199 ~~~-------~~~---~-~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~--~g~~~~~ 260 (417)
T PRK10489 199 LPP-------PPQ---P-RE--HPL--RSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADE-V--WQMGAAQ 260 (417)
T ss_pred CCC-------CCc---c-cc--cch--HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHh-c--cCCChhH
Confidence 210 000 0 00 000 001112222222 11222211111111 111234443221 1 1112222
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhcc-CchhH-HHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 304 GIILIAGYNVFDLVGKSLTAIYLLE-NEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 304 ~~i~~~~fn~gD~iGR~~~~~~~~~-~~~~l-~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
.-.....+.+|..+|+....+...+ ++++. ....+.-.+.+ +.+ ...| +.+..++.++++|+..|......
T Consensus 261 ~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~--~~~-~~~~----~~~~~~~~~~~~g~~~~~~~~~~ 333 (417)
T PRK10489 261 IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV--GLF-GLMP----MWILAVLCLALFGYLSAISSLLQ 333 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH--HHH-Hccc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344567788899988887654332 23332 22222111111 111 1111 22334567777888777665555
Q ss_pred eeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..+..++++|..+..+.......|..+|..+.
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 44555566777888888887777777777776654
No 14
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.20 E-value=0.0018 Score=64.67 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=67.3
Q ss_pred HHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccC
Q 014641 51 PWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (421)
Q Consensus 51 pwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~ 129 (421)
-+..+-...+.+++.+.-++ ........+.+...+.....-.+.+|+..|.-+..+.++..+..+.... .+
T Consensus 27 ~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----~~--- 98 (405)
T TIGR00891 27 DFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF-----AP--- 98 (405)
T ss_pred HHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----hc---
Confidence 34444444455555553222 2234445566666666666666777776555455554444444333221 11
Q ss_pred CcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHHHHHH
Q 014641 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLRI 187 (421)
Q Consensus 130 ~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~i 187 (421)
.+...++.-++.|++.+.......++.. .+|++. .+....|.+++.+++..+.-
T Consensus 99 ----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 99 ----GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred ----cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455667788887777766666544 456543 34455666666666655433
No 15
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.20 E-value=0.00076 Score=68.58 Aligned_cols=104 Identities=7% Similarity=0.044 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.....+.+...+.....-.+.+|+..|.-+..+..+..+..+..... . ....+...++.-.+.|++.+..+
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~r~l~G~~~~~~~ 145 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA-----A----FALSVEMLIVGRVLLGIGVGIAS 145 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----c----cccchHHHHHHHHHHHhhhhHHH
Confidence 44455566666666666666777766555555555554444332221 1 01123445566778888888877
Q ss_pred chhhhhcC-CCCHHH----HHHHHccccchhhHHHHHH
Q 014641 154 GGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 154 ss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ 186 (421)
.....+.+ .+|++. .+.+..+.+++++++.++.
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 76666555 466543 3444555666666665554
No 16
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.19 E-value=0.00024 Score=72.95 Aligned_cols=101 Identities=8% Similarity=-0.017 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
..+...+.+...+.....-.+.+|+..|.=+..+.++..+..+..+.. + .++..++.-++.|++.+..
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-------~~~~l~~~~~l~g~~~g~~ 128 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----S-------SLWAFALLWVLNAFFQGWG 128 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----h-------HHHHHHHHHHHHHHHHHcc
Confidence 445556666666677776777778776544444444444444333221 1 1222233334556666665
Q ss_pred hchhhhhc-CCCCHHH----HHHHHccccchhhHHHHH
Q 014641 153 QGGLIGAA-GELPDRY----MQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 153 qss~~~la-~~fp~~~----~~a~~~G~g~aGv~~sll 185 (421)
......+. ..+|++. ++.+..+++++++++..+
T Consensus 129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553 3567543 344556667777666543
No 17
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.12 E-value=0.00022 Score=69.80 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=155.0
Q ss_pred HHHHhchHH-HhhcccCC-CccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccC
Q 014641 52 WNAFITAVD-YFSYLYPE-ASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (421)
Q Consensus 52 wN~~ita~d-yf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~ 129 (421)
++.+..... ++.+++.- ..........+.+...+.....-.+.+|.+.|.=+..+.++..++..+ ..+ .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~-~~~----~~--- 83 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL-LAF----AS--- 83 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-HHH----HC---
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH-hhh----hh---
Confidence 333444444 56665542 222345556677777777777777788877666455555555555222 111 11
Q ss_pred CcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCH----HHHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhH
Q 014641 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPD----RYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSA 204 (421)
Q Consensus 130 ~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~----~~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~ 204 (421)
.++..++..++.|++.+.......++.. .+|+ +..+....+.+++.+++..+.-. ..+ ..+.+
T Consensus 84 ----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~---l~~--~~~~~--- 151 (352)
T PF07690_consen 84 ----NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF---LIS--YFGWR--- 151 (352)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCC--HCHHC---
T ss_pred ----hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhh---hhh--ccccc---
Confidence 1224666777889998888888877666 5665 23444455555555555443322 210 01111
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchh-HHHHHHH--HHHHHHHHHH---
Q 014641 205 NLYFAVGIVVMVICIVFY-NVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSA-VWHIVGR--VKWYGFGILL--- 277 (421)
Q Consensus 205 ~~yF~i~~~~~~~~~~~~-~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~v~k~--i~~~~l~~fl--- 277 (421)
.. |.+..++.+++.++. .++++.|..+...+ + ++++ +. .++...+ .+.+.|+ .|......++
T Consensus 152 ~~-~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-------~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (352)
T PF07690_consen 152 WA-FLISAILSLIAAILFILFLPEPPPPRERES-------P-KESE-SK-KPKPLKPGFKSLFKNPVLWILLIAFFLFFF 220 (352)
T ss_dssp CH-HHHHHHHHHHHHHHHHCCC---STTTT--S-------S-TTTT----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHH
T ss_pred cc-cccccchhhhhhhhHhhhhhhccccccccc-------c-cccc-cc-cccccccccccccccchhhhhhhhhhHHHH
Confidence 12 333333333333322 22222221110000 0 0000 00 0001111 2222222 2312222222
Q ss_pred HHhhhhhcccceeeecccccCCC-chHHHHHHHHHHhhhhhhhhhhhhhh-ccCc-hhHHHHHHHHHHHHhhhhccccCC
Q 014641 278 IYIVTLSIFPGYITEDVHSEILK-DWYGIILIAGYNVFDLVGKSLTAIYL-LENE-KVAIGGCFARLLFFPLFLGCLHGP 354 (421)
Q Consensus 278 ~f~vTl~vFP~i~~~~~~~~~~~-~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~-~~l~~ls~~R~~fiplf~~~~~~p 354 (421)
.+.......|.+..+ ..+.+ ............++..+|+.+..+.. +.++ +........-.+....+.....
T Consensus 221 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQE---VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-- 295 (352)
T ss_dssp HHHHHHHHHHHHCCH---HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH--
T ss_pred HHHHhhcccchhhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 222223333433111 11112 23444556777888877776654433 2222 2332222222222211111111
Q ss_pred cccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHH
Q 014641 355 KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAG 412 (421)
Q Consensus 355 ~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~G 412 (421)
..+..+.+...+++|+..|........+..+..+++++..+..+....-.+|..+|
T Consensus 296 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 296 --SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp --HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 12334556677788998888888888888888888888888888888888777765
No 18
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.10 E-value=0.0012 Score=66.90 Aligned_cols=287 Identities=18% Similarity=0.213 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhh
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~ 157 (421)
.+.+...+.......+.+|+..|.=+..+.++..+..+.... .+ .++..++.-++.|++.+.......
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----~~-------~~~~l~~~r~l~G~~~g~~~~~~~ 130 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-----AN-------SFSLLLIGRACLGLALGGFWAMSA 130 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-----HC-------hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555555555566778877665555666665554433221 11 233344555677887777766666
Q ss_pred hhcC-CCCHHH----HHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 014641 158 GAAG-ELPDRY----MQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIK 232 (421)
Q Consensus 158 ~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~ 232 (421)
++.+ .+|++. .+-+..+.+++.+++..+.-..... .+. ...|...+ ++.+++.+.. ..+.|..
T Consensus 131 ~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-----~gw---~~~f~~~~-~l~~~~~l~~--~~~~p~~- 198 (394)
T PRK10213 131 SLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-----IGW---RNVFNAAA-VMGVLCIFWI--IKSLPSL- 198 (394)
T ss_pred HHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCH---HHHHHHHH-HHHHHHHHHH--HHHCCCC-
Confidence 6654 566542 3344555555555544443322111 121 12222222 2222222211 1112210
Q ss_pred HHHhhhhhhhhhhhhhccCCCCcccchhHHHHHHH--HHHHHHHHHHHHhhh---hhcccceeeecccccCCCchHHHHH
Q 014641 233 YHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGR--VKWYGFGILLIYIVT---LSIFPGYITEDVHSEILKDWYGIIL 307 (421)
Q Consensus 233 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k~--i~~~~l~~fl~f~vT---l~vFP~i~~~~~~~~~~~~w~~~i~ 307 (421)
+ + +++ +.+.+.++++|+ .|...+..++.+... ...+|....+ + ...+....-..
T Consensus 199 -----~-~---~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~-~g~s~~~~g~~ 257 (394)
T PRK10213 199 -----P-G---EPS---------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN--L-AGFGVDGLTLV 257 (394)
T ss_pred -----C-c---ccc---------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-cCCChhHHHHH
Confidence 0 0 000 001123344432 444434333433322 1222222111 1 11122222345
Q ss_pred HHHHHhhhhhhhhhhhhhhccCchhHHHH-HHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeecc
Q 014641 308 IAGYNVFDLVGKSLTAIYLLENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 386 (421)
Q Consensus 308 ~~~fn~gD~iGR~~~~~~~~~~~~~l~~l-s~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 386 (421)
...+.++..+|+.+..+...+..|+.+.. .+.-.+.. +++.... ++.+......+++|+..|..........-
T Consensus 258 ~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~-~~l~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 331 (394)
T PRK10213 258 LLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSA-LVLTLWG-----SDKIVATGVAIIWGLTFALVPVGWSTWIT 331 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHHHHh-----hhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67788999999988765544333332221 11111110 1111111 12244455677788888776665443333
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 387 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 387 ~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.++ +++..++........+|..+|+.++
T Consensus 332 ~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 332 RSLA-DQAEKAGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred HHCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 4555666655566677777777654
No 19
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.08 E-value=0.00068 Score=70.02 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=56.0
Q ss_pred HhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcch
Q 014641 55 FITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYD 133 (421)
Q Consensus 55 ~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 133 (421)
+-.+.+|..+. .-++ -.......+.+...+.+...-.+.+|+..|.=+..+.++..+..+....... .. .
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-~~-------~ 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-AT-------S 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-cc-------c
Confidence 33455666643 2111 1223334555555555666666778887665445555554444433322110 00 1
Q ss_pred hhhHHHHHHHHhhhhhhhhhchhhh-hcCCCCHHH----HHHHHccccchh
Q 014641 134 GFTVTVGAVALSGLADALVQGGLIG-AAGELPDRY----MQALVAGTAGSG 179 (421)
Q Consensus 134 ~f~i~l~~~~~~g~~~~~~qss~~~-la~~fp~~~----~~a~~~G~g~aG 179 (421)
.+...+++..+.|++.+........ ++..+|++. ++.+..|.+++|
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 2233344455667776665543333 344577654 333455666555
No 20
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.06 E-value=0.00031 Score=80.73 Aligned_cols=315 Identities=16% Similarity=0.041 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
....++.++..+.....-.+..|+..|.-+..+..+.++..+...+.. ..+ .++..++..++.|++.++..
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~--~~~-------~~~~l~~~r~l~G~~~~~~~ 121 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY--YLG-------WFWLAFAVTFLLGAQSAIYS 121 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH--HHc-------cHHHHHHHHHHHHHHHHhhc
Confidence 334556666666666666677888766555555554444333322211 111 24555666777888888888
Q ss_pred chhhhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhc-ccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 154 GGLIGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVY-TQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 154 ss~~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~-~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
.+..++.+. +|++ .++-.+.+.+++.+++.++.-...... .+..++.......++.+.....++.++..+.+++
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK 201 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence 887777664 5543 345556666666666655443322210 0000111111222223222222333333333333
Q ss_pred chhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--HHHHHHHHHHHHHhh---hhhcccceeeecccccCCCch
Q 014641 228 LPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIV---TLSIFPGYITEDVHSEILKDW 302 (421)
Q Consensus 228 ~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~v---Tl~vFP~i~~~~~~~~~~~~w 302 (421)
.|..+. ++++++......+.+..++.+++ ..|...+..++.++. ....+|.+.... ...+..
T Consensus 202 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~ 268 (1146)
T PRK08633 202 VPAAAP----------EVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV---LGLDNT 268 (1146)
T ss_pred CCCCCc----------ccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hCCCcH
Confidence 321100 00000000000001122222332 233333333333322 222344432211 111122
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhcc-CchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 303 -YGIILIAGYNVFDLVGKSLTAIYLLE-NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 303 -~~~i~~~~fn~gD~iGR~~~~~~~~~-~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
..-++...+.+|-++|..+..+...+ .+++.+....+ +..+-++++... .+.+..++..+++|+..|.....
T Consensus 269 ~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 269 FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL-GLALSLFLLPTA-----PSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH-HHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHhhHH
Confidence 23355667778888888776554332 22222221111 111111111111 13344566777888888776665
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
...+..+..++++|..+..+.++...+|..+|..++
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555556677777766666666666654444443
No 21
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.04 E-value=0.0038 Score=68.66 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
+..++.+++.++|..+..+.. ...+|++++...+=.... .+++. +.++....+++.+++|+..+-..+....+
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~-~ll~~-----~~~s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS-CFFLS-----FGNSESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHH-----HHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999987644 345555433222111111 11111 11222334444455565444334445566
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++..+.++|..+..+....-.+|-.+|..+.
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999888888888888888877664
No 22
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00048 Score=66.88 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=120.4
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcccC-CCccchhhHHHHHHHHHHHHHHHHHhcCCCCc---ceEehhHHHHH-H
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYP-EASVDRIFAVAYMLVGLFCLVIIVFYAHKSDA---WVRINVGLGLF-V 111 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~Ri~~~~~~~-~ 111 (421)
....-.++|+|+-..-|...-..+-.-...| +.+..++.++.-++.|+.-.++.++ .|..+. ..-+++.+... .
T Consensus 12 t~llvalfG~gswa~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla~lgpLi~tll-hk~~~~~i~~VPiif~ll~~a~ 90 (439)
T KOG4255|consen 12 THLLVALFGMGSWAGVNGLWVELPLLVKELPEGWSLPSYLSVVVQLANLGPLIVTLL-HKGAPGTIPTVPIIFVLLLLAC 90 (439)
T ss_pred HHHHHHHHccchHhhhcceeeehhHHHhhcCcccccchHHHHHHHHHcchhHHHHHH-HhhCCCcCCCCCchhHHHHHHH
Confidence 4455567788877766776555544443343 3456788899999999988776544 332221 12222222222 2
Q ss_pred HHHHHHHHhhheeecc-----cCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHHH
Q 014641 112 VALLVVPVMDAVYIKG-----RVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 112 v~l~~~~~~~~~~~~~-----~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ 186 (421)
++-+. ++..|-++ .....++ +.+.+.+++.++.-...++-..+.+||.|.+++..|+|++|++++++.
T Consensus 91 v~~l~---laflW~~ts~V~g~~hS~af----l~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLSaLlPslla 163 (439)
T KOG4255|consen 91 VCQLG---LAFLWHDTSPVFGALHSWAF----LSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLSALLPSLLA 163 (439)
T ss_pred HHHHH---HHHHHhcchhhhcCcchHHH----HHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHHHHHHHHHH
Confidence 22222 22233322 1112222 345666788888899999999999999999999999999999999998
Q ss_pred HHHHHh---cc--cCc---cchhhhHHHHHHHHHHHHHHHHHHHHHhccchh
Q 014641 187 ILTKAV---YT--QDA---IGLRKSANLYFAVGIVVMVICIVFYNVAHRLPV 230 (421)
Q Consensus 187 ii~~~~---~~--~~~---~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~ 230 (421)
++--.. -+ .++ --.|.+..+||.+-..+...|..+|+.+.|++-
T Consensus 164 LaQGtg~~~C~~n~t~~r~fP~rFs~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 164 LAQGTGRLECDLNGTPGRPFPPRFSVSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred HHccCCceeecCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 873221 11 111 224678899999999999999999999988753
No 23
>PRK03545 putative arabinose transporter; Provisional
Probab=97.93 E-value=0.0053 Score=61.85 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=65.8
Q ss_pred HHHhhcccCCCccc-hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhH
Q 014641 59 VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137 (421)
Q Consensus 59 ~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i 137 (421)
.+...+++.-++.+ ......+.+...+.....-.+.+|++.|.-+..+..+..++.+.... .+ .++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~~ 99 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-----AW-------NFTV 99 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-----hc-------cHHH
Confidence 45556555433222 33334555555555555556788888876666666665555443222 11 2333
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHHHH
Q 014641 138 TVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 138 ~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ 186 (421)
.++.-.+.|++.+.......++.+ .+|++ .++.+..|.+++.+++..+.
T Consensus 100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~ 153 (390)
T PRK03545 100 LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLG 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 445556677777776666666655 45643 45667777777777765544
No 24
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.92 E-value=0.0032 Score=63.45 Aligned_cols=306 Identities=16% Similarity=0.050 Sum_probs=137.7
Q ss_pred HhhcccCCC-ccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHH
Q 014641 61 YFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTV 139 (421)
Q Consensus 61 yf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l 139 (421)
|.++++..+ ........++.+...+.+...-.+.+|+..|.-+..+..+..+..+....... .+ .+....+...+
T Consensus 41 ~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~ 116 (399)
T PRK05122 41 YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGL--LA--AWPVLSLLLLL 116 (399)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhh--hh--ccchhHHHHHH
Confidence 344444422 22345555667777777777777788888777777776665554333222111 11 11112334445
Q ss_pred HHHHHhhhhhhhhhchhhhh-cCCCCHHH-HHH---HHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHH
Q 014641 140 GAVALSGLADALVQGGLIGA-AGELPDRY-MQA---LVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVV 214 (421)
Q Consensus 140 ~~~~~~g~~~~~~qss~~~l-a~~fp~~~-~~a---~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~ 214 (421)
+.-++.|++.+......... ....|++. .++ ...+...+.+++..+--..... .+.+ ..|.+..++
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~~----~~~~~~~~~ 187 (399)
T PRK05122 117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-----GGLA----GLGLLIMLL 187 (399)
T ss_pred HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-----ccHH----HHHHHHHHH
Confidence 56677888888877766654 34555433 222 2334444444443332221111 1111 112222222
Q ss_pred HHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHHHHHHHHHHHHHHHh---hhhhcccceee
Q 014641 215 MVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYI---VTLSIFPGYIT 291 (421)
Q Consensus 215 ~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k~i~~~~l~~fl~f~---vTl~vFP~i~~ 291 (421)
+++......+.|.. + + +++ ++.+.++.+|+.|.......+..+ ......|....
T Consensus 188 ---~~~~~~~~~~~~~~------~--~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T PRK05122 188 ---ALLGLLLARPRPAV------P--P--VKG----------ERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYA 244 (399)
T ss_pred ---HHHHHHHHhcCCCC------C--C--CCc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222210 0 0 000 112344555555554332222111 11111122211
Q ss_pred ecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHH
Q 014641 292 EDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLL 370 (421)
Q Consensus 292 ~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lf 370 (421)
+.+ .++ .......+.++-.+||....+... .++|+...... .+....++.... .++.+..++..+++
T Consensus 245 ---~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~ 312 (399)
T PRK05122 245 ---ARG-WDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSL--LVEILGLLLLWL----APSPWMALIGAALT 312 (399)
T ss_pred ---Hcc-ccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHH
Confidence 111 111 112345778888888887654332 23444332221 121111111111 12223445566778
Q ss_pred hhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 014641 371 GLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 414 (421)
Q Consensus 371 gltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~ 414 (421)
|+..|-..........+..++++|..+..+++.....|..+|..
T Consensus 313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776544333333345567778888888887777777665543
No 25
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.0022 Score=64.87 Aligned_cols=294 Identities=16% Similarity=0.170 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchh
Q 014641 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (421)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~ 156 (421)
..|-....+.......+..|++.|.-....+.+.+++-++..+. ..|...++.=++.|++.|..-+..
T Consensus 55 s~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------------p~f~~Ll~aR~~~g~a~G~f~~i~ 122 (394)
T COG2814 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------------PSFAVLLLARALAGLAHGVFWSIA 122 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666667777776666565555555555443221 256777778888888888888888
Q ss_pred hhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhh
Q 014641 157 IGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVI 231 (421)
Q Consensus 157 ~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~ 231 (421)
.+++.. -||+ -++-++.|..+|=+++.-+--..-..+ + + ...|+.++.+-.+..+..+..++ |-
T Consensus 123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-----G--W-R~~F~~ia~l~ll~~~~~~~~lP--~~- 191 (394)
T COG2814 123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-----G--W-RATFLAIAVLALLALLLLWKLLP--PS- 191 (394)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-----h--H-HHHHHHHHHHHHHHHHHHHHhCC--Cc-
Confidence 888775 4543 355666676666666544333221111 1 1 12344444443333333344444 10
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--HHHHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHH
Q 014641 232 KYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIA 309 (421)
Q Consensus 232 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~ 309 (421)
+.+ + +.++ ...+..+++| ++|...+..++.+.-.++.|.-+.+.-.+....+.-...+..+
T Consensus 192 ------~~~---~--~~~~------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll 254 (394)
T COG2814 192 ------EIS---G--SLPG------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLL 254 (394)
T ss_pred ------cCC---C--CCCc------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHH
Confidence 000 0 0000 0122344554 6777777777777777777766532211222222333456778
Q ss_pred HHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcC
Q 014641 310 GYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVV 389 (421)
Q Consensus 310 ~fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v 389 (421)
.|-+|-++|-.+..+..-+++++.++...+ +..+.++.+... -++.+..+..++++|++++-....--+...+ .
T Consensus 255 ~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~-l~a~~~l~l~~~----~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~ 328 (394)
T COG2814 255 AFGIAGFIGNLLGGRLADRGPRRALIAALL-LLALALLALTFT----GASPALALALLFLWGFAFSPALQGLQTRLAR-L 328 (394)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHH-HHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-c
Confidence 999999999988766554455554332211 111111212111 1122445666666788775443332222222 4
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 390 QLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 390 ~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+|.+|.++.++.-+.++|+.+|+.++
T Consensus 329 ~p~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 329 APDAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999876
No 26
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.89 E-value=0.0042 Score=61.77 Aligned_cols=122 Identities=9% Similarity=0.011 Sum_probs=64.2
Q ss_pred hHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
+..+.+....+.+.+.+..++ ........+.+...+...+.-.+.+|.+.|.-+..+.++..+..+.... .+
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~-- 91 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL-----SN-- 91 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----Hc--
Confidence 344555555666665554322 2234445566666666666666677776554445555444444433221 11
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHH
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVS 183 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~s 183 (421)
.+...++..++.|++.+.......++.. .+|++. .+....+.++++.++.
T Consensus 92 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 146 (385)
T TIGR00710 92 -----NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAP 146 (385)
T ss_pred -----cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445566778888877777766665 356443 2333334444444443
No 27
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.86 E-value=0.0051 Score=59.65 Aligned_cols=297 Identities=17% Similarity=0.175 Sum_probs=154.0
Q ss_pred hHHHHHhchHHHhhcccCCC-ccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
+.++......+.+.+++..+ .........+.+...+.....-.+.+|.+.|.-+..+.++..+..+..... +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-- 85 (352)
T cd06174 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S-- 85 (352)
T ss_pred HhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c--
Confidence 34444444444444444222 123344555666666666666667778776665566666655555443321 1
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhh
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKS 203 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~ 203 (421)
.+...++...+.|++.+..+....++... +|++ ..+....+.++++.++..+.-..... .+.
T Consensus 86 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~--- 152 (352)
T cd06174 86 -----SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGW--- 152 (352)
T ss_pred -----cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhH---
Confidence 23344556677888888887777776664 4542 33444455555555555443332211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHHHHHHHHHHHHHHHhh--
Q 014641 204 ANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIV-- 281 (421)
Q Consensus 204 ~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k~i~~~~l~~fl~f~v-- 281 (421)
...|...+ ++.+++.+....++ |+.|...+..++....
T Consensus 153 ~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ 192 (352)
T cd06174 153 RWLFLILA-ILGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYY 192 (352)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHH
Confidence 12222222 22222222222111 1223333332322222
Q ss_pred -hhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHH-hhhhccccCCccc
Q 014641 282 -TLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFF-PLFLGCLHGPKFF 357 (421)
Q Consensus 282 -Tl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~-l~~ls~~R~~fi-plf~~~~~~p~~~ 357 (421)
.....|.+..+ ..+.++...-.....+.++..+|+....+... .++|+ ...... .+.. ..+.....
T Consensus 193 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~----- 262 (352)
T cd06174 193 GLLTYLPLYLQE---VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL--LLAALGLLLLALA----- 262 (352)
T ss_pred HHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHh-----
Confidence 22223332211 10123333446677888999999988654322 23333 222111 1111 11111111
Q ss_pred ccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 358 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 358 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
++.+..++..++.|+..|...+....+..+..++++|..+..+.......|..+|+.+.
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345677788889999988888888888888888999888888888888888877665
No 28
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.82 E-value=0.011 Score=61.77 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q 014641 305 IILIAGYNVFDLVGKSLTAIY 325 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~ 325 (421)
.....+++++..+||.+..+.
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~l 311 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGYL 311 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 345667888999999876553
No 29
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.82 E-value=0.0046 Score=63.26 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=82.9
Q ss_pred hhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 36 LAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 36 l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
.+...|++.|... +..-...+.+++.+.-+.. .......+.+...+.....-.+.+|+..|.-+..++.+..+..
T Consensus 7 ~~~~~f~~~G~~~----~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 7 LITSLFALWGFAN----DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4567788888765 2222333555665543322 2344556666666667777778889888888888888877766
Q ss_pred HHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHHHH
Q 014641 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ 186 (421)
+...... .. ..|+..++..++.|++.|..|.+.-.+.. ..|++ .++-...++++++.++..+.
T Consensus 83 ~l~~~~~--~~-------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 83 FLFWPAA--EI-------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHHHH--hh-------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432111 01 13455566778889999999986665543 33443 34444455666666555443
No 30
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.80 E-value=0.0023 Score=65.71 Aligned_cols=124 Identities=12% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHhchHHHhhcc-cCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCC
Q 014641 52 WNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG 130 (421)
Q Consensus 52 wN~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~ 130 (421)
...+....++.++. +.. +........+.+...+.....-.+.+|+..|.-+..+.++..++.+....... ..
T Consensus 43 ~~~~~~~~p~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~ 115 (438)
T TIGR00712 43 RKNFALAMPYLVEQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW------AT 115 (438)
T ss_pred hccHHhhhHHHHHcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc------cc
Confidence 33334445555552 111 11233444555556666666666677887655445555555544433222110 00
Q ss_pred cchhhhHHHHHHHHhhhhhhhhhchhhh-hcCCCCHH----HHHHHHccccchhhHHHH
Q 014641 131 LYDGFTVTVGAVALSGLADALVQGGLIG-AAGELPDR----YMQALVAGTAGSGVLVSV 184 (421)
Q Consensus 131 ~~~~f~i~l~~~~~~g~~~~~~qss~~~-la~~fp~~----~~~a~~~G~g~aGv~~sl 184 (421)
..+....+..++.|++.+...+.... +...+|++ .++.+..+.+++|.++..
T Consensus 116 --~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 116 --SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred --chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 12222233444566666554443222 23457653 344556666777666544
No 31
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.80 E-value=0.0084 Score=60.33 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+...+++|+..|-.....+.+..+..+ +++..++.+.+....+|-.+|+.++
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 300 WTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777666655555544333 4666777777766777777777654
No 32
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0011 Score=66.51 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=93.5
Q ss_pred ccCCCCCCCccchhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccch-hhHHHHHHHHHHHHHHHHHhcCCCCcceE
Q 014641 24 TVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDR-IFAVAYMLVGLFCLVIIVFYAHKSDAWVR 102 (421)
Q Consensus 24 ~~~~~~p~d~~~l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~R 102 (421)
..+++.++-.+.+.+..|++.|+...+ |=.+ .+-+++.|+-+..+. .+-.++....+...+-.-.+.+|+++|.-
T Consensus 5 ~~~~~~~~~~~v~~t~lFfl~G~~~~l--~diL--ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g 80 (422)
T COG0738 5 ASSSKSVKLAFVLLTSLFFLWGFITCL--NDIL--IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG 80 (422)
T ss_pred ccccCCceeHHHHHHHHHHHHHHHhhc--chhh--HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH
Confidence 344555667778889999999986544 1122 234555555444433 33455556666666666778899999999
Q ss_pred ehhHHHHHHHHHHHH-HHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHH-----HHHHHHcccc
Q 014641 103 INVGLGLFVVALLVV-PVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR-----YMQALVAGTA 176 (421)
Q Consensus 103 i~~~~~~~~v~l~~~-~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~-----~~~a~~~G~g 176 (421)
+..|+.+.++...+. |.. .. ..|..-++...++|.+-+++|.+.=.+.+...++ -++-.+.=.|
T Consensus 81 i~lgL~l~avg~~lF~pAa---~~-------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~ 150 (422)
T COG0738 81 IVLGLLLYAVGAALFWPAA---SS-------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG 150 (422)
T ss_pred HHHHHHHHHHHHHHHhhhh---hh-------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhh
Confidence 999999998876543 321 11 2344456667889999999999998888876543 2333444445
Q ss_pred chhhHH
Q 014641 177 GSGVLV 182 (421)
Q Consensus 177 ~aGv~~ 182 (421)
++++++
T Consensus 151 lGa~~g 156 (422)
T COG0738 151 LGAILG 156 (422)
T ss_pred hHHHHH
Confidence 555444
No 33
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.70 E-value=0.0014 Score=67.96 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=67.8
Q ss_pred hHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhh
Q 014641 58 AVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (421)
Q Consensus 58 a~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~ 136 (421)
+.+...+.+.-++ -......++.+...+.+...-.+.+|++.|.-+..+.++..+..+.+........ ..+.
T Consensus 51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 123 (467)
T PRK09556 51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS-------VSLG 123 (467)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc-------chHH
Confidence 3455555554222 2234455667777777777777788888776666666665554444333211111 1333
Q ss_pred HHHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHHHH
Q 014641 137 VTVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 137 i~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ 186 (421)
..++.-++.|++.+..-.....+.+ .+|++ .++.+..|.+++++++.++.
T Consensus 124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 4444555677776665555555554 57754 34555666777777766554
No 34
>TIGR00898 2A0119 cation transport protein.
Probab=97.70 E-value=0.013 Score=61.13 Aligned_cols=103 Identities=10% Similarity=-0.012 Sum_probs=52.3
Q ss_pred HHHHHhhhhhhhhhhhhhhc-cCchhHHHH-HHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeec
Q 014641 308 IAGYNVFDLVGKSLTAIYLL-ENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 385 (421)
Q Consensus 308 ~~~fn~gD~iGR~~~~~~~~-~~~~~l~~l-s~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 385 (421)
..++.+....|+.+..+... ..+|+.... .+.-.+...++.... ++ +.+..+...++.++..+-.......+.
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-VD----LYFLRTALAVLGKFGITSAFQMVYLYT 435 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-CC----chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778888877654332 234443222 221122211111111 10 112333344444444444445555677
Q ss_pred cCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 014641 386 PKVVQLQHAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 386 p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
++..+++.|..+..+.+..-.+|-.+|..+
T Consensus 436 ~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i 465 (505)
T TIGR00898 436 AELYPTVVRNLGVGVCSTMARVGSIISPFL 465 (505)
T ss_pred cccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence 787788888887777777666676666544
No 35
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.70 E-value=0.0087 Score=59.16 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=53.9
Q ss_pred HHHHhchHH-HhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccC
Q 014641 52 WNAFITAVD-YFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (421)
Q Consensus 52 wN~~ita~d-yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~ 129 (421)
|..+....+ |+++.+.-++ ....+...+.+...+.....-.+.+|+..|.-+..+.++..+..+..... +
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~--- 88 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----V--- 88 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----h---
Confidence 334444444 3555443222 23455566677777777777777778776666666666666555443321 1
Q ss_pred CcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHH
Q 014641 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR 166 (421)
Q Consensus 130 ~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~ 166 (421)
. .+...++..++.|++.+......--++..+|++
T Consensus 89 -~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 122 (366)
T TIGR00886 89 -Q--SYSVLLLLRLFIGIAGGSFASCMPWISFFFPKK 122 (366)
T ss_pred -h--hHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHh
Confidence 0 223333445556665554443333334456654
No 36
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.011 Score=59.99 Aligned_cols=299 Identities=14% Similarity=0.151 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchh
Q 014641 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (421)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~ 156 (421)
.++.++.=+..+++-.+..|.+.|.=+..++++..++.+.+-.. ....+..++.+++|..+|..-...
T Consensus 71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~ 138 (448)
T COG2271 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPC 138 (448)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHH
Confidence 34444444455566666899998888888888877666543211 133444455666777776665554
Q ss_pred hhhcC-CCCHH----HH----HHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 157 IGAAG-ELPDR----YM----QALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 157 ~~la~-~fp~~----~~----~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
....+ -||++ .. .+-..|.++++.++.+ -.... +.-...++ +.-+++.+++++++++.++-
T Consensus 139 ~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l-----a~~~~---~~~w~~~f--~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 139 ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL-----AFFAF---HGGWRAAF--YFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH-----HHHHh---ccchhHHH--HHHHHHHHHHHHHHHHHhCC
Confidence 44433 35542 22 3334455555554443 11111 11112232 23344555666667777765
Q ss_pred chhh------HHHHhhhhhhhhhhhhhccC-CCCcccchhHHHHHH--HHHHHHHHHHHHHhhhhhc---ccceeeeccc
Q 014641 228 LPVI------KYHEDLKIQAVNEEKEEKGS-LTGSMWRSAVWHIVG--RVKWYGFGILLIYIVTLSI---FPGYITEDVH 295 (421)
Q Consensus 228 ~p~~------~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~vTl~v---FP~i~~~~~~ 295 (421)
+|.. +++.+...+. +++|++++ ++ .++.-.+.|+| -+|..+++.+++|++=+.+ =|-+..+..+
T Consensus 209 ~Pqs~GLP~ie~~~~d~~e~--~~~~~~~~~ls--~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~ 284 (448)
T COG2271 209 RPQSEGLPPIEEYRGDPLEI--YEEEKENEGLT--AWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKG 284 (448)
T ss_pred CccccCCCCHHHhhcCchhh--hhhhccCCCcc--HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcC
Confidence 5533 2222211100 01111111 10 01111222333 6899999999999987754 2222222111
Q ss_pred ccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc--cCchhHHHHHHHH-HHHHhhhhccccCCcccccchhHHHHHHHHhh
Q 014641 296 SEILKDWYGIILIAGYNVFDLVGKSLTAIYLL--ENEKVAIGGCFAR-LLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGL 372 (421)
Q Consensus 296 ~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~--~~~~~l~~ls~~R-~~fiplf~~~~~~p~~~~~d~~~~il~~lfgl 372 (421)
.+.-..-..+.+|=++-+.|-.+..|..- .+-||-....+.- .+++- +......|.. |.+...++.++.|+
T Consensus 285 ---~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~-~~~~w~~~~~--~~~l~~~~l~~iGf 358 (448)
T COG2271 285 ---FSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITAS-LVLYWLAPNG--SYLLDAILLFIIGF 358 (448)
T ss_pred ---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHcCCCc--cHHHHHHHHHHHHH
Confidence 11112335678999999999999988653 3333322111111 11111 1111111211 22333444445554
Q ss_pred hccccchheeeeccCc------CChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 373 TNGYLTSVLMILAPKV------VQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 373 tnGy~~t~~mi~~p~~------v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+|+|+- .+-..|+.||+...+.=.+|-.+|+.++
T Consensus 359 ---------~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 359 ---------LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALA 399 (448)
T ss_pred ---------HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhc
Confidence 3555552 2334577777777766666666665544
No 37
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.64 E-value=0.018 Score=57.90 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....+.++..+++....+.. +.++|+....... +....++.... .++.+..++..++.|+.+|-........
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALI--FSVLLLIPMSF----VQTPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH--HHHHHHHHHHH----hccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 344566778888776544322 2233333222221 11111111111 1222444556667788887655543333
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..+++++...-.+......+|..+|..++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 33334445555544444444555555555543
No 38
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.64 E-value=0.023 Score=60.12 Aligned_cols=328 Identities=15% Similarity=0.054 Sum_probs=158.8
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHH
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~ 115 (421)
.|-.+++--..+.+.......+...+..+..++.. ......+..+|.++..+..-.+..|.+.|.=+..+-.+..+..+
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~ 90 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL 90 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555544433322 23445666777777777777778898877777777776665555
Q ss_pred HHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH-HH-----------HHccccchhhHH
Q 014641 116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRYM-QA-----------LVAGTAGSGVLV 182 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~~-~a-----------~~~G~g~aGv~~ 182 (421)
++++... .+ ....+..++..++.|+++++.+.+..++.. +.|++.. +| -..|-++||++.
T Consensus 91 ~L~~l~~--~~-----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 91 LLAVLAF--FG-----LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHH--hC-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5544332 21 123455667788899999999888888776 5675442 22 223444444443
Q ss_pred HHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchhHH
Q 014641 183 SVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVW 262 (421)
Q Consensus 183 sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 262 (421)
+..... .. |.+.++..++.+......++.+ .+++ .++| ....+++
T Consensus 164 a~~G~~----------------~~-f~inalsfl~~i~~l~~~~~~~-------~~~~---~~~e--------~~~~~l~ 208 (524)
T PF05977_consen 164 AFFGAA----------------AA-FLINALSFLISILALLRWKPPP-------PPSS---LPRE--------RFFSALR 208 (524)
T ss_pred HHHHHH----------------HH-HHHHHHHHHHHHHHHHHccccc-------cccc---cchh--------hhhhhHH
Confidence 332211 11 1222221111222221111110 0000 0000 0011122
Q ss_pred HHHHH------HHHHHHHHHHHHh---hhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhc-cCchh
Q 014641 263 HIVGR------VKWYGFGILLIYI---VTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKV 332 (421)
Q Consensus 263 ~v~k~------i~~~~l~~fl~f~---vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~-~~~~~ 332 (421)
+-+|. ++..+...++.++ --..+.|-+..+ ..+.+...--++..++.+|-.+|-.+..+.+. .+.++
T Consensus 209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~---~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~ 285 (524)
T PF05977_consen 209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARD---VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR 285 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Confidence 22221 1111111111111 112334544211 11112222235678999999999998765443 23334
Q ss_pred HHHHHHHHHHHHh-hhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHH
Q 014641 333 AIGGCFARLLFFP-LFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAA 411 (421)
Q Consensus 333 l~~ls~~R~~fip-lf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~ 411 (421)
+...+. +++-. ++.+. +.++.+..++.+++.|+......+......-+.++++.|..+..+.......|..+
T Consensus 286 lv~~~~--~~~a~~~~~la-----l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l 358 (524)
T PF05977_consen 286 LVLLAS--LLFALALLLLA-----LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL 358 (524)
T ss_pred hhHHHH--HHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence 332222 11111 11111 12333455667777788777666554444445567777887777777777777777
Q ss_pred HHHHH
Q 014641 412 GSIVA 416 (421)
Q Consensus 412 Gs~~s 416 (421)
|+++.
T Consensus 359 Gsll~ 363 (524)
T PF05977_consen 359 GSLLW 363 (524)
T ss_pred HHHHH
Confidence 77653
No 39
>PRK10133 L-fucose transporter; Provisional
Probab=97.61 E-value=0.014 Score=60.24 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=78.2
Q ss_pred hHHHHHHhhhhhhHHHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHH
Q 014641 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (421)
Q Consensus 38 y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~ 116 (421)
.+.|++.|+.... .-...+.+++.+.-++- .......+.+...+.+...-.+.+|+..|.=+..++.+..+..+.
T Consensus 32 ~~~~~~~~~~~~~----~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l 107 (438)
T PRK10133 32 CSLFFLWAVANNL----NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3555666655422 22223445665644332 234445666666666666667778877777777777777666543
Q ss_pred HHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHH-----HHHHHccccchhhHHHHH
Q 014641 117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRY-----MQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~-----~~a~~~G~g~aGv~~sll 185 (421)
..... .. ..+...++.-++.|++.+..+.+...+....+++. ++..+.+.++++.++.++
T Consensus 108 ~~~~~--~a-------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 108 FWPAA--EI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHH--hc-------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 11 13455566778889999998888877765554332 334455666666666554
No 40
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.61 E-value=0.0047 Score=61.18 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCH
Q 014641 87 LVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPD 165 (421)
Q Consensus 87 ~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~ 165 (421)
..+.-.+.+|+..|.-+..+.++..+..+....... +.+ . ........++.-++.|++.+..+.....+.+. +|+
T Consensus 52 ~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 127 (394)
T TIGR00883 52 AIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS-YAT--I-GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP 127 (394)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-hhh--h-HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence 344445567777666566666666555544333210 000 0 00011233444566777777666655555553 443
Q ss_pred ----HHHHHHHccccchhhHHHHHHHH
Q 014641 166 ----RYMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 166 ----~~~~a~~~G~g~aGv~~sll~ii 188 (421)
........|.+++.+++.++...
T Consensus 128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 128 GKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777776666655443
No 41
>PRK12382 putative transporter; Provisional
Probab=97.59 E-value=0.018 Score=57.86 Aligned_cols=102 Identities=16% Similarity=-0.009 Sum_probs=56.3
Q ss_pred HHHHHhhhhhhhhhhhhhh-ccCchh-HHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeec
Q 014641 308 IAGYNVFDLVGKSLTAIYL-LENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 385 (421)
Q Consensus 308 ~~~fn~gD~iGR~~~~~~~-~~~~~~-l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 385 (421)
...+.++..+|+....+.. +.++|+ +........+...++. .. ++.+..++..+++|+..|..........
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW--LA-----PTAWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH--Hc-----ccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567788888877654422 223333 3322222222221111 11 1223445566777887776554444444
Q ss_pred cCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 386 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 386 p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+..++++|..+..+.......|..+|..++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888888877777777777777554
No 42
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.59 E-value=0.026 Score=58.21 Aligned_cols=112 Identities=7% Similarity=-0.083 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
......+.+...+..++.-.+.+|+..|.=+..+.++..++.+..............+....+...++.-++.|++.|..
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence 34455667777777777777778877666666666665554443222110000000111122333445667788888888
Q ss_pred hchhhhhcC-CCCHHH----HHHHHccccchhhHHHH
Q 014641 153 QGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSV 184 (421)
Q Consensus 153 qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sl 184 (421)
.....++.+ .+|++. ++....|.+++++++.+
T Consensus 138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~ 174 (479)
T PRK10077 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF 174 (479)
T ss_pred hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 887777755 577653 34444444455544433
No 43
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.57 E-value=0.011 Score=59.88 Aligned_cols=118 Identities=8% Similarity=0.069 Sum_probs=57.7
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHH
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~ 115 (421)
.-+.+.+....+.+-...+....+.+.+++.-+.- .......+.+...+.....-.+.+|+..|.-+..+..+..++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 93 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCL 93 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33344444444344445455555555555543221 22333456666666666666667777665544555544444433
Q ss_pred HHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 014641 116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~ 166 (421)
.... .+ .+...++...+.|++.+.......+... .+|++
T Consensus 94 ~~~~-----~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~ 133 (406)
T PRK15402 94 AILL-----AQ-------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA 133 (406)
T ss_pred HHHH-----Hc-------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh
Confidence 3221 11 1222334455667766665554444433 46653
No 44
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0032 Score=66.02 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
+.....+.+...++++....+.+|+| ...++....++-.++..++.. . ..+...+++=+++|++.|..
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~----ls~~l~~~~~~w~~~~~~~~~-~-------~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFP----LSKGLSVSGILWGLFGFLTAA-V-------HSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHH-H-------hhhHHHHHHHHHHHHHhccc
Confidence 34455666666666666666788888 222222222222222222211 1 13344556667788777776
Q ss_pred hchhhhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 014641 153 QGGLIGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHR 227 (421)
Q Consensus 153 qss~~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r 227 (421)
-.+...+.+. |.++ -++.+.+.++++++++++++-...-... ..+...=.+.|.+.+++.....+++|++++.
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 6666666664 5542 3677888888888888887765332111 1111111234445555555677788888999
Q ss_pred chhhHHHHhhhhhh-hhhhhhhccCC--CCcccchhHHHHHH--HHHHHHHHHHHHHhhhhh
Q 014641 228 LPVIKYHEDLKIQA-VNEEKEEKGSL--TGSMWRSAVWHIVG--RVKWYGFGILLIYIVTLS 284 (421)
Q Consensus 228 ~p~~~~~~~~~~~~-~~e~~~~~~~~--~~~~~~~~~~~v~k--~i~~~~l~~fl~f~vTl~ 284 (421)
+|..-...+.++++ ..|+.++++.. +.+.++..+++.+| ++|++.++.++...+...
T Consensus 230 ~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~ 291 (495)
T KOG2533|consen 230 NPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG 291 (495)
T ss_pred ChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence 88632211111100 00111111111 11134567778877 788888888888777653
No 45
>PRK03699 putative transporter; Provisional
Probab=97.55 E-value=0.019 Score=57.96 Aligned_cols=95 Identities=7% Similarity=-0.028 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchh
Q 014641 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (421)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~ 156 (421)
..+.+...+.....-.+.+|++.|.-+..+..+..+..+.... .+ .+...++.-.+.|++.+...+..
T Consensus 49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~-----~~-------~~~~~~~~~~l~G~~~g~~~~~~ 116 (394)
T PRK03699 49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF-----SH-------SLALFSIAMFVLGVVSGITMSIG 116 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----cc-------hHHHHHHHHHHHHHhhHhhccch
Confidence 3455555666666666777777666555555554444433221 11 22333445566777777665544
Q ss_pred hhhc-CCCCHHHHH----HHHccccchhhHHH
Q 014641 157 IGAA-GELPDRYMQ----ALVAGTAGSGVLVS 183 (421)
Q Consensus 157 ~~la-~~fp~~~~~----a~~~G~g~aGv~~s 183 (421)
..+. ..+|++.-+ ....+.+++|.+..
T Consensus 117 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 117 TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 4433 356654322 22234455555444
No 46
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.52 E-value=0.035 Score=56.35 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=63.1
Q ss_pred HHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHH
Q 014641 60 DYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVT 138 (421)
Q Consensus 60 dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~ 138 (421)
.++++.+.-++. .......+.+...+.....-.+.+|+..|.-+..+.++..++.+..... + .+...
T Consensus 42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~-------~~~~l 109 (426)
T PRK12307 42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----S-------GVIML 109 (426)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----h-------HHHHH
Confidence 444444432222 2344455666666666666677778776655566666665555443321 1 23334
Q ss_pred HHHHHHhhhhhhhhhchhhhhc-CCCCHHH----HHHHHccccchhhHHHH
Q 014641 139 VGAVALSGLADALVQGGLIGAA-GELPDRY----MQALVAGTAGSGVLVSV 184 (421)
Q Consensus 139 l~~~~~~g~~~~~~qss~~~la-~~fp~~~----~~a~~~G~g~aGv~~sl 184 (421)
++.-.+.|++.+........+. ..+|++. .+.+..|.+++++++..
T Consensus 110 ~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence 4555677777766555555543 4566543 45566677777776654
No 47
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.50 E-value=0.015 Score=60.06 Aligned_cols=108 Identities=10% Similarity=0.096 Sum_probs=61.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhcc-ccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGC-LHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~-~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
.......++..+|+.+..+.. +.++|+....... +..+-.+++. ...|. .+.+.....+++.|+..|......+.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~~~~~~~~~~ 371 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI-LYAVGFYWRAFTFTPD--TPFLAIALPQFIRGFGMGCFFMPLTT 371 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888765532 2334443222221 1111111111 11111 11133455567788888776655555
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+.+.++++++..+..+.++.-..|-.+|..+.
T Consensus 372 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 372 IALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 555667888888888888888888888876653
No 48
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.0065 Score=64.03 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=63.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcc---CchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYLLE---NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 382 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~~~---~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 382 (421)
.+..+-++.|.+||....+..-. +.+++...++....+-.+++... ++-+..+...+++|++-|...++.-
T Consensus 337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA------TTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999998775532 23334444444443333222211 2224578888899999999999887
Q ss_pred eeccCcCChhhHHHHhHHHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGS 413 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs 413 (421)
....+.+..++-.-|-.+..++..++..+|.
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp 441 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGP 441 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence 6666666666555555555555555555443
No 49
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.49 E-value=0.023 Score=57.97 Aligned_cols=118 Identities=14% Similarity=-0.051 Sum_probs=60.5
Q ss_pred hHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhh
Q 014641 58 AVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (421)
Q Consensus 58 a~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~ 136 (421)
+.+..++.+.-++. .......+.+...+..+..-.+.+|+..|.=+..+.++..+..+..+. .+ .+.
T Consensus 30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~ 97 (412)
T TIGR02332 30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF-----AT-------GPE 97 (412)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----hc-------CHH
Confidence 34455555532221 123334444455555555555566666555444455444444433322 11 122
Q ss_pred HHHHHHHHhhhhhhhhhchhhhh-cCCCCHH----HHHHHHccccchhhHHHHHHH
Q 014641 137 VTVGAVALSGLADALVQGGLIGA-AGELPDR----YMQALVAGTAGSGVLVSVLRI 187 (421)
Q Consensus 137 i~l~~~~~~g~~~~~~qss~~~l-a~~fp~~----~~~a~~~G~g~aGv~~sll~i 187 (421)
..++.-.+.|++.+....+...+ ...+|++ .++.++.|.+++++++..+.-
T Consensus 98 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344556777777666655554 4457854 356677777777777666543
No 50
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.44 E-value=0.076 Score=55.47 Aligned_cols=96 Identities=10% Similarity=-0.007 Sum_probs=49.8
Q ss_pred HHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcc--hhhhHHHHHHHHhhhhhhhhhchhhhhcC-CC
Q 014641 87 LVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY--DGFTVTVGAVALSGLADALVQGGLIGAAG-EL 163 (421)
Q Consensus 87 ~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~--~~f~i~l~~~~~~g~~~~~~qss~~~la~-~f 163 (421)
.+..-.+.+|+..|.-+..+.+++.++.+..... ++ .++. ......++.=++.|++.|....+...+.+ .+
T Consensus 74 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~~-~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~ 147 (490)
T PRK10642 74 GLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI-----PS-YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS 147 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-----cc-HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC
Confidence 3444455677776666666666666555543321 10 0000 00112344556677777766666666555 46
Q ss_pred CH----HHHHHHHccccchhhHHHHHHHH
Q 014641 164 PD----RYMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 164 p~----~~~~a~~~G~g~aGv~~sll~ii 188 (421)
|+ +..+.+..|..++.+++..+..+
T Consensus 148 p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 148 PDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 34555555655555555544433
No 51
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.32 E-value=0.024 Score=65.54 Aligned_cols=310 Identities=14% Similarity=0.027 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
....++.++.++.+.+.-.+..|++.|.-+.......++... ..+... .. ..++..+++.++.|+++++..
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~-~~~~~~-~~-------~s~~~l~~~~~l~gi~~a~~~ 126 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA-LAIYGF-HL-------NSVPLLFAALFLMGIHSALFG 126 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH-HHHHHH-HH-------hhHHHHHHHHHHHHHHHHhhc
Confidence 334466677776666666677777654321111111111111 111111 11 134556667888899999888
Q ss_pred chhhhhcC-CCCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 014641 154 GGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRL 228 (421)
Q Consensus 154 ss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~ 228 (421)
....++.. .+|++ -++..+.+.+++.+++..+.-...... + ....|..+.++.++++++...+++.
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-----N----FVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-----c----cHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 87777765 45643 456677777777777766555433221 1 1222333333333333333333332
Q ss_pred hhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHHH--HHHHHHHHHHHHHh---hhhhcccceeeecccccCCCchH
Q 014641 229 PVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYI---VTLSIFPGYITEDVHSEILKDWY 303 (421)
Q Consensus 229 p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~k--~i~~~~l~~fl~f~---vTl~vFP~i~~~~~~~~~~~~w~ 303 (421)
+-.+ . +.+. +... .++....++.+.| ..|...+..++.++ ..+..+|.+... ....+...
T Consensus 198 ~~~~-------~---~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~g~~~~~ 262 (1140)
T PRK06814 198 GNAA-------P---DLKI-DRNI-IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TLGGDENV 262 (1140)
T ss_pred CCCC-------C---CCee-ccch-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HcCCchHH
Confidence 1000 0 0000 0000 0000112222222 23333333333222 233445655321 11112222
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc-cC-chhHHH-HHHHHHHHHhhhhc-c--ccCCc-------cc--ccchhHHHHHH
Q 014641 304 GIILIAGYNVFDLVGKSLTAIYLL-EN-EKVAIG-GCFARLLFFPLFLG-C--LHGPK-------FF--RTEIPVTLLTC 368 (421)
Q Consensus 304 ~~i~~~~fn~gD~iGR~~~~~~~~-~~-~~~l~~-ls~~R~~fiplf~~-~--~~~p~-------~~--~~d~~~~il~~ 368 (421)
.-.+...+.+|-.+|.....+... .. .+.+.. ..+.-+..+.+.+. . ...+. +. .+.+..++..+
T Consensus 263 ~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1140)
T PRK06814 263 ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLF 342 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHH
Confidence 334567788888999888766532 11 222211 11111111111111 0 00000 01 34455666777
Q ss_pred HHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 369 LLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 369 lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
++|+..|..........-+..+++++..+..+.++...+|..+|+.+.
T Consensus 343 ~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 343 GLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred HHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 888888877766555555566777888877777777777777777654
No 52
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.32 E-value=0.033 Score=59.55 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHhhhhhhhhhhhh-h-hccCchhH-HHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeecc
Q 014641 310 GYNVFDLVGKSLTAI-Y-LLENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 386 (421)
Q Consensus 310 ~fn~gD~iGR~~~~~-~-~~~~~~~l-~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 386 (421)
.+++|=..|-.+..+ . +.++.|+. ++.++...+++-+....+ |+-- -..+.+.++-|+.-|+....++..+.
T Consensus 357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~--~~n~---~~~i~~~~l~g~giG~~~~~~~~~~q 431 (599)
T PF06609_consen 357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR--PDNK---NAAIAFLVLAGFGIGGILVPAIVIAQ 431 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--CCCc---chHHHHHHHHHHhHHHHHHHHHHeeE
Confidence 455555555543322 1 22344554 344555555555443333 2211 12356677788888999988888776
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 387 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 387 ~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
-.+++++-..+..++...=.+|-.+|..+.
T Consensus 432 l~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 432 LIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 667777778888888887778777777654
No 53
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.29 E-value=0.055 Score=54.39 Aligned_cols=99 Identities=11% Similarity=-0.066 Sum_probs=58.9
Q ss_pred HHHHHHhhhhhhhhhhhh-hhccCchhHH----HHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 307 LIAGYNVFDLVGKSLTAI-YLLENEKVAI----GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 307 ~~~~fn~gD~iGR~~~~~-~~~~~~~~l~----~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
......++..++.....+ .++.++|+++ +...+|.+..+ +.++.+..+..+++.|++-|.+....
T Consensus 245 l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 245 LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG----------AIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH----------hHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777666533 3344555543 23333333221 12333556778999999999999998
Q ss_pred eeeccCcCChhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~-~~~~l~~Gl~~Gs~~s 416 (421)
+.+..+. ++++|..+-.+ ...+..+|..+|+.++
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765 66565544333 2345666777666654
No 54
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.28 E-value=0.11 Score=54.32 Aligned_cols=110 Identities=7% Similarity=-0.114 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
..+...+.+...+..++...+.+|+..|.-+..+.++..+..++.... . ++ .....+...++.-++.|++.+..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~---~-~~--~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS---P-GS--SPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---c-Cc--ccchHHHHHHHHHHHHHHHHhhh
Confidence 355666677777777777777777765544555555555544332221 1 10 11122444566677788888877
Q ss_pred hchhhhhcC-CCCHHHH----HHHHccccchhhHHHHHHHH
Q 014641 153 QGGLIGAAG-ELPDRYM----QALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 153 qss~~~la~-~fp~~~~----~a~~~G~g~aGv~~sll~ii 188 (421)
......+.+ .+|++.- +....++.++.+++..+...
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666 6776553 33344455555555544433
No 55
>PRK10504 putative transporter; Provisional
Probab=97.23 E-value=0.078 Score=54.72 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 365 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 365 il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..++.|+..|..........++.++++++..+..+.++...+|..+|..+.
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3455667777766666556666777788888888888888888887776654
No 56
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.18 E-value=0.09 Score=52.00 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 362 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 362 ~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..++..++.|+..|......+.+..+.. ++++..+..+......+|..+|..++
T Consensus 290 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 290 ALLMLQLLNAIFIGILAGIGMLYFQDLM-PGRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777766655555544433 34455555555555567776666543
No 57
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.16 E-value=0.096 Score=52.05 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhc
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG 154 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qs 154 (421)
....+.+...+.....-.+.+|...|.-+..+.++..+..+.... .+ .+...++...+.|++.+....
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~-----~~-------~~~~~~~~~~l~g~~~~~~~~ 98 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL-----AQ-------TIDQLIYMRFLHGLAAAAASV 98 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH-----Hc-------cHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666566667776544444454444444433222 11 122334455667777776655
Q ss_pred hhhhhcC-CCCHHH----HHHHHccccchhhHHHHH
Q 014641 155 GLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 155 s~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll 185 (421)
...++.. .+|++. .+....+.+++++++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 456442 333445555555555544
No 58
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.11 E-value=0.076 Score=54.83 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.+...+.+...+.+...-.+.+|+..|.-+..+.++..+..+..+... . ..+...++.-++.|++.+...
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~-------~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---G-------GGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---H-------cCchHHHHHHHHHHHhcccch
Confidence 344566666666666666677777766555555555444433332210 0 122334455566777777776
Q ss_pred chhhhhcC-CCCHHH----HHHHHccccchhhHHHHH
Q 014641 154 GGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 154 ss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll 185 (421)
.....+.+ .+|++. ++....|..++++++..+
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l 186 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555 467543 444555555655555444
No 59
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.07 E-value=0.26 Score=50.12 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.......++-.+|..+..+.. +.++|+.+..... +..+....+... + .+.+..++.+++.|+..|-........
T Consensus 261 ~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (437)
T TIGR00792 261 YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL-LMVLGYLIFFFA-G---SNLPLILVLIILAGFGQNFVTGLVWAL 335 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHc-c---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888777654322 2233443322221 111111111111 1 122344556667777777666554444
Q ss_pred ccCcCC-------hhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQ-------LQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~-------~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++.++ ++.+..+..+.+++..+|..+|..+.
T Consensus 336 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 336 VADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred HhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 22234555666777777777776554
No 60
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.04 E-value=0.16 Score=51.33 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHH-H-HHHHHHHH-HhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 306 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAI-G-GCFARLLF-FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~~-~~~~~l~-~-ls~~R~~f-iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
.....+.++..+|+....+..- .++|+.. . ..++-.+. +.+...-.. ...+.+..++..+++|+..|......
T Consensus 261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~G~~~~~~~~~~ 337 (402)
T TIGR00897 261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---FGHSFAVALIIAIALGIFLAGYVPLA 337 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---cCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999988755432 2333322 1 11222211 111111010 11233445566777787776544332
Q ss_pred eeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
. ..+ ...+++|..+..+.+....+|-.+|..++
T Consensus 338 ~-~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 338 A-VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred H-HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 34566788888888888888777776544
No 61
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.01 E-value=0.068 Score=53.69 Aligned_cols=56 Identities=9% Similarity=-0.123 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHH-hHHHHHHHHHHHHHHHHH
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETA-GIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~a-g~~~~~~l~~Gl~~Gs~~ 415 (421)
+.+..++..++.|++.|......+.+..+. +++++..+ +....+....|..+|..+
T Consensus 292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 292 ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567778889999998777777666554 33333332 222234444555555543
No 62
>PRK11043 putative transporter; Provisional
Probab=97.00 E-value=0.32 Score=48.92 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=37.1
Q ss_pred hhhhhhHHHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 45 GLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 45 G~~~LlpwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
+....+.++.+....+.+++.+.-++. .......+.+...+.....-.+.+|+..|.-+..+..+..+..
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 334455677776665555555533221 2333345555555566666666677766555555554444333
No 63
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.98 E-value=0.34 Score=49.00 Aligned_cols=136 Identities=9% Similarity=-0.015 Sum_probs=67.1
Q ss_pred HHHHHhhhhhhHHHHHhchHHHhhcc--cCCCccchhhHHHHHHHHHHHHHHHHHhcCCC-----CcceEe-hhHHHHHH
Q 014641 40 IYFTLGLGFLLPWNAFITAVDYFSYL--YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKS-----DAWVRI-NVGLGLFV 111 (421)
Q Consensus 40 ~f~llG~~~LlpwN~~ita~dyf~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~Ri-~~~~~~~~ 111 (421)
.|+.++...=+|.....++.+.|-+. ++.+++. .+..... + .....+.-.+.+|. ..|+|+ ..+.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~-~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 3 AMLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQ-A-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH-H-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 37788888889999999987665432 3332221 1122222 2 33344444456666 333443 33344443
Q ss_pred HHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHHHH
Q 014641 112 VALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 112 v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sll~ 186 (421)
+++..+.. .+ + ...++...+..++.++..+......-+++. ..|++ +.+..+.|++++.+++..+-
T Consensus 80 l~~~~l~~-----~~--~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 80 ASIAAMAF-----CP--P--HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHHHHHHh-----cC--c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 34433221 11 0 112222233333445555544444444433 35543 56667788888887776644
Q ss_pred H
Q 014641 187 I 187 (421)
Q Consensus 187 i 187 (421)
.
T Consensus 151 ~ 151 (402)
T PRK11902 151 L 151 (402)
T ss_pred H
Confidence 3
No 64
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.96 E-value=0.049 Score=53.91 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVI 401 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~ 401 (421)
+..+..+++.++.+|......+.+..+..++|+|-..-.+.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34455666778888888887777777777777766544443
No 65
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.90 E-value=0.18 Score=52.82 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+..+++.|+..|.........+-+.++++++..++.+.+..-.+|..+|..++
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34466777889988877665555555667888999999999999999988887654
No 66
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.88 E-value=0.15 Score=50.33 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred hHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhh
Q 014641 58 AVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (421)
Q Consensus 58 a~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~ 136 (421)
..+.+++.+.-+. ........+.+...+.....-++.+|+..|.-+..+.++..+..+.. ..+ .+.
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~-------~~~ 88 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAP-------GTA 88 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhc-------cHH
Confidence 3455565554222 22344455666666666666677777776655555554443333211 111 122
Q ss_pred HHHHHHHHhhhhhhhhhchhhhhcCC-CCHH---HHHHHHccccchhhHHHHH
Q 014641 137 VTVGAVALSGLADALVQGGLIGAAGE-LPDR---YMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 137 i~l~~~~~~g~~~~~~qss~~~la~~-fp~~---~~~a~~~G~g~aGv~~sll 185 (421)
..++...+.|++.+..+...-.+... +|++ ..+.+..++++++.++..+
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 23344555666666655544444443 3332 4555566666666665544
No 67
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.87 E-value=0.1 Score=52.63 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=27.9
Q ss_pred HHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 364 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 364 ~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+.+++.++..|........+..+ ..+++|..+..+.......|..+|+.++
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444433333222 2334566666666666677777777665
No 68
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.85 E-value=0.29 Score=49.11 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=67.1
Q ss_pred HHHHHHhhhhhhHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHH
Q 014641 39 IIYFTLGLGFLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVV 117 (421)
Q Consensus 39 ~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~ 117 (421)
...+..|++.... ....+.+++++.-++ ..+....++.+...+.....-.+.+|.+.|.-+..+..+..+..+..
T Consensus 10 ~~~~~~~~~~~~~----~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~ 85 (382)
T PRK10091 10 LGTFGLGMAEFGI----MGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF 85 (382)
T ss_pred HHHHHHHhhHHHH----HhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 3444555543332 223344454443222 22445556677777777777777888876665566655555444432
Q ss_pred HHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHHH
Q 014641 118 PVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSV 184 (421)
Q Consensus 118 ~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sl 184 (421)
.. .+ .++..++.-++.|++.+........+.+ .+|++. ++.+..|+++++.++..
T Consensus 86 ~~-----~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 86 TL-----SS-------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HH-----hC-------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 21 11 1233344556677776665544444333 455532 34445666666666544
No 69
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.78 E-value=0.51 Score=48.89 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=60.5
Q ss_pred hHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhh
Q 014641 58 AVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (421)
Q Consensus 58 a~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~ 136 (421)
..+++.+++.-+.- ...+...+.+...+.....-.+.+|+..|.-+..+.++..+..+.... .+ .+.
T Consensus 42 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~ 109 (496)
T PRK03893 42 VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF-----AP-------GYW 109 (496)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----Hh-------HHH
Confidence 34555555533221 123334455555555566666677776655555555555444433222 11 233
Q ss_pred HHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHHHHH
Q 014641 137 VTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 137 i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ 186 (421)
..++...+.|++.+..+.....+.. .+|++. .+.+..|.+++++++..+.
T Consensus 110 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 110 TLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777766655555443 567653 3445555566665555443
No 70
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.73 E-value=0.44 Score=47.74 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHH-HHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~-ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
....++.++..+||....+.. +.++|+.+. ......+...++. + . ......+.++|+..+-.....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----~----~-~~~~~~~~l~g~~~~~~~p~~~~ 308 (381)
T PRK03633 239 FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-----S----Q-AAMAPALFILGAAGFTLYPVAMA 308 (381)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-----h----h-HHHHHHHHHHHHHHHhHHHHHHH
Confidence 446678889999998765433 234444322 1221111111111 1 1 12233455667665544455555
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
...+..+++++..+......+..+|-.+|..++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 309 WACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665655555555566667777776544
No 71
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.73 E-value=0.68 Score=46.44 Aligned_cols=29 Identities=17% Similarity=-0.051 Sum_probs=22.1
Q ss_pred hHHHHHHhhhhhhHHHHHhchHHHhhccc
Q 014641 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLY 66 (421)
Q Consensus 38 y~~f~llG~~~LlpwN~~ita~dyf~~~~ 66 (421)
+..++.++...=+|++......++|-++.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~ 31 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED 31 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 56667777778889999998887776544
No 72
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=96.53 E-value=0.73 Score=46.18 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=53.9
Q ss_pred hHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
...+....+.+.+.+++..++ ........+.+...+.....-.+.+|...|.-+..+.++..+....... .+
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~-----~~-- 89 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL-----AE-- 89 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH-----hC--
Confidence 334455566666665554322 2233444555666666666666677776554444444444443332211 11
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~ 166 (421)
.+...++.-.+.|++.+..+....++.. .+|++
T Consensus 90 -----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 123 (392)
T PRK10473 90 -----TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR 123 (392)
T ss_pred -----cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH
Confidence 1122334455677777777766666655 46654
No 73
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.50 E-value=0.39 Score=48.31 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 110 (421)
.....+.+...+.+...-.+.+|+..|..+..+.+..
T Consensus 42 ~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 78 (396)
T TIGR00882 42 IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGL 78 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3445566666666666666777877655555544443
No 74
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.47 E-value=0.24 Score=48.66 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHhhhhhhhhhchhhhhcCCC-CH----HHHHHHHccccchhhHHHHHHH
Q 014641 134 GFTVTVGAVALSGLADALVQGGLIGAAGEL-PD----RYMQALVAGTAGSGVLVSVLRI 187 (421)
Q Consensus 134 ~f~i~l~~~~~~g~~~~~~qss~~~la~~f-p~----~~~~a~~~G~g~aGv~~sll~i 187 (421)
.|...++..++.|.+.+++|.+.=.+.+.. |+ +.++-...-+|++.+++.++--
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~ 67 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG 67 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 567788889999999999999999998854 33 3455566666777766665443
No 75
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.41 E-value=1.3 Score=44.79 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=74.5
Q ss_pred HHHHHhhhhhhHHHHHhc-hHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHH
Q 014641 40 IYFTLGLGFLLPWNAFIT-AVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVV 117 (421)
Q Consensus 40 ~f~llG~~~LlpwN~~it-a~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~ 117 (421)
...+.|+ +.-++...++ ..+-.+++|.-++- .......+.+...+.+...-.+.+|+..|.=+..+..+..++.+..
T Consensus 13 ~~~~~~~-~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 13 VLVLIGL-NMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHH-HcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3445554 3334554444 34556666653322 2344445556666666666677778777777777777777666654
Q ss_pred HHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH---HHHHHHccccchhhHHHH
Q 014641 118 PVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR---YMQALVAGTAGSGVLVSV 184 (421)
Q Consensus 118 ~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~---~~~a~~~G~g~aGv~~sl 184 (421)
... + .+...++.-++.|++.+..+.....+... +|++ .++.+..|+..++.++..
T Consensus 92 ~~a-----~-------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~ 150 (393)
T PRK09705 92 ELY-----P-------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAA 150 (393)
T ss_pred HHC-----c-------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHH
Confidence 331 1 22334556778888888877777676664 5433 334444444444444443
No 76
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.35 E-value=0.48 Score=47.70 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=63.1
Q ss_pred HHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCC
Q 014641 52 WNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG 130 (421)
Q Consensus 52 wN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~ 130 (421)
|-.+-...+..++++.-+.- ......++.+...+.++..-.+.+|+. |+|+..+.....+.... ... ..
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g-rr~~~~~~~~~~~~~~~-~~~----~~---- 76 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF-KRWFLFGSLATFAAAAG-RLL----DP---- 76 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH-HHH----Hh----
Confidence 44444444445555532221 123344455555555555566677765 44544333322222111 111 00
Q ss_pred cchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHH----HHHHHHccccchhhHHHHHHHH
Q 014641 131 LYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR----YMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 131 ~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~----~~~a~~~G~g~aGv~~sll~ii 188 (421)
..+...++.-++.|++.+..-.+...++..+|++ .++-+..|++++++++.++.-.
T Consensus 77 --~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 77 --FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred --ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334455566667777766555555556677754 3555667777777777655443
No 77
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.29 E-value=0.73 Score=47.05 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCChhhH----H---HHhHHHHHHHHHHHHHHHHHHHH
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHA----E---TAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~r----e---~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+.+..++..++.|+..|-........-++.++.+|. + ....+.++..-.|..+|..+..+
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 456678888888998888887777777776664432 2 34455666666777777665443
No 78
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.24 E-value=1.5 Score=45.19 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=91.9
Q ss_pred CccchhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHH
Q 014641 32 DTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFV 111 (421)
Q Consensus 32 d~~~l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~ 111 (421)
.+|+.+.++|-++-..+-+-|+.+-.-.+|.++.|...+...++++.||+..+...+...++.+|...|.-...+.+++.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~ 120 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNG 120 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHH
Confidence 45788889999999999999999999999999988866677899999999999999999999999888888888888887
Q ss_pred HHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhc-----CCCCHHH
Q 014641 112 VALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAA-----GELPDRY 167 (421)
Q Consensus 112 v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la-----~~fp~~~ 167 (421)
+...+=.+...-+++ +. ..+-+++..-. .++..|--++++- .-||++-
T Consensus 121 iGa~Ir~iss~p~v~---~~-f~~~l~~~Gq~----iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 121 IGAWIRLISSLPFVP---PL-FRRPLTHTGQS----IAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred HHHHHhhhccCcccc---cc-chhhhhHHhHH----HHHHhhhHhhccccHHHHhhCCcch
Confidence 766542221111111 11 12235555544 4455666666662 2467543
No 79
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.23 E-value=1.2 Score=46.68 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=67.6
Q ss_pred hHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccc--hhhHHHHHHHHHHHHHHHHHhcCCCC----cceE--ehhHHHH
Q 014641 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD--RIFAVAYMLVGLFCLVIIVFYAHKSD----AWVR--INVGLGL 109 (421)
Q Consensus 38 y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~R--i~~~~~~ 109 (421)
+..++++|...-+|+-........+.+.. +.+.. ..++ ....+. ....+.-.+.+|.+ -|+| +..+.+.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~ 90 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL 90 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence 56788888888899887777654443322 22211 1111 111111 23333334445541 1333 2233333
Q ss_pred HHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH----HHHHHHccccchhhHHHH
Q 014641 110 FVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR----YMQALVAGTAGSGVLVSV 184 (421)
Q Consensus 110 ~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~----~~~a~~~G~g~aGv~~sl 184 (421)
..++...+.. .+ + ...++...+..++.|++.+..+...-++.. .+|++ ..+..+.|..++.+++..
T Consensus 91 ~~~~~~~~a~-----~~--~--~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~ 161 (491)
T PRK11010 91 LLVAIAAMGF-----LE--P--GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG 161 (491)
T ss_pred HHHHHHHHHH-----cC--C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221 11 1 123344444555667777766666656654 46633 345567777777777655
Q ss_pred HHH
Q 014641 185 LRI 187 (421)
Q Consensus 185 l~i 187 (421)
+-.
T Consensus 162 l~~ 164 (491)
T PRK11010 162 LAL 164 (491)
T ss_pred HHH
Confidence 443
No 80
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.20 E-value=0.48 Score=48.12 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAET 396 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ 396 (421)
+......++.|+..+-.....+.+.++..+++.+..
T Consensus 316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~ 351 (420)
T PRK09528 316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSAT 351 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceee
Confidence 344455666676665555555555555555555443
No 81
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.15 E-value=1.8 Score=43.90 Aligned_cols=53 Identities=21% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
..+..+++++..|-..........+.+++++|..+..+..+....|..+|..+
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccc
Confidence 33444556665553333333344455667788887777888777777777544
No 82
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.13 E-value=1.7 Score=43.89 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=51.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhh
Q 014641 72 DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADAL 151 (421)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~ 151 (421)
.......|.++..+...+.-.+.+|++.|.=+..+..+..+..+.... .. .. ++.-++.|++.+.
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~-----~~-------~~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF-----GI-------HP---LLAYGLVGIGAAA 104 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH-----HH-------HH---HHHHHHHHHHHHH
Confidence 355566777777777777777788888777677777666554432211 01 01 2333567888888
Q ss_pred hhchhhhhcC-CCCHH
Q 014641 152 VQGGLIGAAG-ELPDR 166 (421)
Q Consensus 152 ~qss~~~la~-~fp~~ 166 (421)
...+..++.. .+|++
T Consensus 105 ~~pa~~a~i~~~~~~~ 120 (393)
T PRK11195 105 YSPAKYGILTELLPGE 120 (393)
T ss_pred HHHHHHHHHHHHcCHH
Confidence 8888888766 47754
No 83
>PRK10054 putative transporter; Provisional
Probab=96.02 E-value=0.82 Score=46.26 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHH
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~ 115 (421)
.+.+...+.+...-.+.+|+..|.-+..+.+...+..+
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 34444555555555667777766545555554444443
No 84
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.99 E-value=1.5 Score=45.79 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=50.8
Q ss_pred ccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 358 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 358 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
.|.++.++.++++++..+......+....+..+++.|.....+..+....|-.+|+.++-.
T Consensus 379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~ 439 (475)
T TIGR00924 379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439 (475)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888899999999988888888887888889999888888889998888776543
No 85
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.96 E-value=0.27 Score=50.27 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhhhhhhhhhh-hhccCchhHHHHHH-HHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhee
Q 014641 305 IILIAGYNVFDLVGKSLTAI-YLLENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 382 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~-~~~~~~~~l~~ls~-~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 382 (421)
-....+..+++.+++....+ ..+.++|+++..+. +-.+...++.. ..+. ..+.+..++..++.|+..|.......
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~--~~~~-~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY--GDPE-YFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--cCcc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888877544 22334555433222 22111111111 1111 01112344567788888887766666
Q ss_pred eeccCcCChhhHHHHhHHHH-HHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIV-LFLVLGLAAGSIVA 416 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~-~~l~~Gl~~Gs~~s 416 (421)
.+..+..++++|..+-.+.. ....+|..+|..++
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67777778888888777775 45566776666554
No 86
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.95 E-value=0.7 Score=50.18 Aligned_cols=129 Identities=9% Similarity=0.081 Sum_probs=75.5
Q ss_pred HHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheee------------
Q 014641 59 VDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYI------------ 125 (421)
Q Consensus 59 ~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~------------ 125 (421)
..-+.++|.-++. ...+...|.+.+.+..+....++.|...+.=+..+.+++.+..++..+-+...-
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~ 135 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG 135 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence 3445555643332 346667888888888888888888877666667777777666655443321100
Q ss_pred c-----ccCC--------------------c--chhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCH----HHHHHHHc
Q 014641 126 K-----GRVG--------------------L--YDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPD----RYMQALVA 173 (421)
Q Consensus 126 ~-----~~~~--------------------~--~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~----~~~~a~~~ 173 (421)
+ .+.+ + ...+...++.-++.|++.+........+..- +|+ .+.+.+..
T Consensus 136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~ 215 (633)
T TIGR00805 136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES 215 (633)
T ss_pred cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence 0 0000 0 1134445566777888877776666666553 453 45666666
Q ss_pred cccchhhHHHHHHH
Q 014641 174 GTAGSGVLVSVLRI 187 (421)
Q Consensus 174 G~g~aGv~~sll~i 187 (421)
+..++..++.++.-
T Consensus 216 ~~~iG~~lG~llgg 229 (633)
T TIGR00805 216 IAVFGPAFGYLLGS 229 (633)
T ss_pred HHHhhhHHHHHHHH
Confidence 66666666655443
No 87
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.81 E-value=0.11 Score=54.17 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=63.9
Q ss_pred hchHHHhhc--ccCCCccchhhHHHHHHHHHHHHHHHHHhcCC-CCcceEehhHHHHHHHHHHHHHHhhheeecccCCcc
Q 014641 56 ITAVDYFSY--LYPEASVDRIFAVAYMLVGLFCLVIIVFYAHK-SDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY 132 (421)
Q Consensus 56 ita~dyf~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 132 (421)
.++-+|-++ +-.+.++-.+..-++.+.....+.+.-.+.+| -+.+.=++.|.++.+++-++-..+ .|.. ++
T Consensus 55 ~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l--~~~~----~~ 128 (488)
T KOG2325|consen 55 TSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLAL--AYVP----NG 128 (488)
T ss_pred eecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHH--Hhcc----cc
Confidence 344566554 22223333344434444444444444444333 333555666776666655544222 2332 21
Q ss_pred hhhhHHHHHHHHhhhhhh-h-hhchhhhhcCCCCH--HHHHHHHccccchhhHHHHHHHHHHHh
Q 014641 133 DGFTVTVGAVALSGLADA-L-VQGGLIGAAGELPD--RYMQALVAGTAGSGVLVSVLRILTKAV 192 (421)
Q Consensus 133 ~~f~i~l~~~~~~g~~~~-~-~qss~~~la~~fp~--~~~~a~~~G~g~aGv~~sll~ii~~~~ 192 (421)
.. ++.|+.=++.|++.| . .-=+-.+-++.-++ +-..+...|+.+|=+++..++.+..-.
T Consensus 129 ~~-y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 129 VK-YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred hH-HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 22 345666666776632 2 22233344444443 345555556667777788888776554
No 88
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=95.70 E-value=2.8 Score=42.63 Aligned_cols=100 Identities=9% Similarity=0.002 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhc
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG 154 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qs 154 (421)
....|.+...+.+...-.+.+|+..|.-+..+..+..++.+.... .+ .+...++.-++.|++.+....
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~-------~~~~l~~~r~l~Gi~~~~~~~ 123 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TT-------SMTQFLIARFIQGTSICFIAT 123 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666677877666555555555444433221 11 223344555667777766555
Q ss_pred hhhhhcC-CCCHHH----HHHHHccccchhhHHHHHH
Q 014641 155 GLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 155 s~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ 186 (421)
..+.... .+|++. ++.+..+.+++++++.++-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5454433 566532 3445555566666655443
No 89
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.62 E-value=2.1 Score=44.75 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.+-.++-...++.++-.-.+.+|+..|.-+..+..+..+..+++|+... ..++..+++=++.|++.|..-
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhHHH
Confidence 4444555566666666556677878778888888888888888887532 133345667778888888888
Q ss_pred chhhhhcCCCCHH-----HHHHHHccccchhhH
Q 014641 154 GGLIGAAGELPDR-----YMQALVAGTAGSGVL 181 (421)
Q Consensus 154 ss~~~la~~fp~~-----~~~a~~~G~g~aGv~ 181 (421)
.++-++.+...|. +.....+|.-++-++
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~ 179 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTII 179 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888875542 344444444333333
No 90
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.47 E-value=0.29 Score=50.83 Aligned_cols=104 Identities=13% Similarity=-0.046 Sum_probs=47.2
Q ss_pred HHHHHhchHHHhhccc-CCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccC
Q 014641 51 PWNAFITAVDYFSYLY-PEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (421)
Q Consensus 51 pwN~~ita~dyf~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~ 129 (421)
..+...+...||.+.. .+.+....+.....+..++...+...+.+|+..+.....+..+.++..+...... ... .
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~--~ 321 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAA--P 321 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccC--c
Confidence 3343333334554433 2222222333334455666666666777787766665555555444333222110 111 1
Q ss_pred CcchhhhHHHHHHHHhhhhhhhhhchhhhhcC
Q 014641 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAG 161 (421)
Q Consensus 130 ~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~ 161 (421)
. ..+..++..++.|++.+.......++.+
T Consensus 322 -~--~~~~~~i~~~l~g~~~~~~~~~~~am~a 350 (473)
T PRK10429 322 -H--NALLIVIAGILLNIGTALFWVLQVIMVA 350 (473)
T ss_pred -h--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1222333445556666665555444444
No 91
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.38 E-value=0.83 Score=46.64 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=68.0
Q ss_pred hhhHHHHHhchHHHhhcc-cCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeec
Q 014641 48 FLLPWNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (421)
Q Consensus 48 ~LlpwN~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~ 126 (421)
..+.++...+...||.+. ..+++....+...+.++.++...+..++.+|+..+.-+..+..+.++..+.......
T Consensus 237 ~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---- 312 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---- 312 (428)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----
Confidence 345555555555666654 455556677777888888888888888999998888778888887777665444311
Q ss_pred ccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC
Q 014641 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG 161 (421)
Q Consensus 127 ~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~ 161 (421)
...+..++..++.|++.+.......++.+
T Consensus 313 ------~~~~~~~i~~~l~gi~~~~~~~~~~a~~a 341 (428)
T PF13347_consen 313 ------GSPWLVLILFILAGIGYGAFFVIPWAMLA 341 (428)
T ss_pred ------hhHHHHHHHHHHhHhhhcccccccccccc
Confidence 12233455666677777666655555544
No 92
>PRK09952 shikimate transporter; Provisional
Probab=95.37 E-value=1.9 Score=44.31 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCc--chhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCH
Q 014641 89 IIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGL--YDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPD 165 (421)
Q Consensus 89 ~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~--~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~ 165 (421)
+.-.+.+|+..|.-+..+.++..+..+.... .++ .+. .......+++=.+.|++.|..-.+...+.+ .+|+
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGL-----LPS-FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhc-----CCc-HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 3344566766555555555555554443322 110 000 001112333445667766655444444444 4665
Q ss_pred H----HHHHHHccccchhhHHHHHH
Q 014641 166 R----YMQALVAGTAGSGVLVSVLR 186 (421)
Q Consensus 166 ~----~~~a~~~G~g~aGv~~sll~ 186 (421)
+ +.+..+.|.+++.+++..+-
T Consensus 157 ~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 157 NKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45667777777777765543
No 93
>PRK09848 glucuronide transporter; Provisional
Probab=95.29 E-value=0.49 Score=48.58 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhc
Q 014641 81 LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAA 160 (421)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la 160 (421)
+..++...+..++.+|.+.+.-+..+.++..+..+.+.. .+ + . .++...+...+.|++.+.......++.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-----~~-~--~--~~~~~~~~~~l~g~G~~~~~~~~~al~ 344 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-----VS-V--W--SLPVALVALAIASIGQGVTMTVMWALE 344 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cC-c--h--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556677777666666666665555443321 11 0 1 122233344556666666666666555
Q ss_pred C
Q 014641 161 G 161 (421)
Q Consensus 161 ~ 161 (421)
+
T Consensus 345 ~ 345 (448)
T PRK09848 345 A 345 (448)
T ss_pred H
Confidence 4
No 94
>PRK09669 putative symporter YagG; Provisional
Probab=94.99 E-value=5 Score=41.13 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhhccccchheeeeccCcCChhhHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 014641 362 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAE-------TAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 362 ~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re-------~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
..++..++.|+..|-...+.....++.++.+|.+ ......+++..+|..+|..++-
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667788888877766666666655433321 2345666677788888776553
No 95
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=94.95 E-value=5.7 Score=41.66 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=49.2
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.++.+...++.|+..+..+...+..+-+..+++.+..+..+..+...+|-.+|+.++
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677788899999999999888888888888999999998888899999988776
No 96
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.49 E-value=5.5 Score=41.56 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC
Q 014641 82 VGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG 161 (421)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~ 161 (421)
..-+..+..-.+.+|+..|.-+..+..+..+..+...... .+ ....+...+++-++.|++.+..-++.-....
T Consensus 82 ~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~---~~----~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~ 154 (462)
T PRK15034 82 SGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV---QN----PNTPFGIFIVIALLCGFAGANFASSMGNISF 154 (462)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---cc----cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333444445566776655544555554444443332210 00 1124555666777778775544444444445
Q ss_pred CCCHH
Q 014641 162 ELPDR 166 (421)
Q Consensus 162 ~fp~~ 166 (421)
.||++
T Consensus 155 wfp~~ 159 (462)
T PRK15034 155 FFPKA 159 (462)
T ss_pred HCCHh
Confidence 68876
No 97
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=93.85 E-value=9.8 Score=39.88 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCCh--hhHHHHhHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQL--QHAETAGIVIVLFLVLGLAAGS 413 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~--~~re~ag~~~~~~l~~Gl~~Gs 413 (421)
+..++++.++|+.-.=..+..+....+..++ +.+.....+.+.++.+.=.+-|
T Consensus 381 ~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~s 435 (477)
T TIGR01301 381 ASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVS 435 (477)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHH
Confidence 4456777788888777777777766555553 2334556666666665544444
No 98
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=93.51 E-value=1.4 Score=44.68 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=50.3
Q ss_pred hHHHHHhchHHHhhcc-cCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
..++...+...||.+. +.+.+....+...+.+..++...+..++.+|+..+..+..+.++.++..+.... .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~-- 308 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-----AG-- 308 (437)
T ss_pred HHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cc--
Confidence 3344433334454432 222222234444556677777777777778877665555565555544433221 11
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG 161 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~ 161 (421)
. .....++..++.|++.+..+....++.+
T Consensus 309 --~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (437)
T TIGR00792 309 --S--NLPLILVLIILAGFGQNFVTGLVWALVA 337 (437)
T ss_pred --h--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1122233445566666666665555544
No 99
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.50 E-value=5.1 Score=42.02 Aligned_cols=118 Identities=14% Similarity=-0.039 Sum_probs=64.4
Q ss_pred HHHhhcccC--CCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhh
Q 014641 59 VDYFSYLYP--EASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (421)
Q Consensus 59 ~dyf~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~ 136 (421)
.+|+.+.+. +++..+.+.-++..+..+.++..-.+.+|+.+|.=+..+.+...+..++.+.. ..+.
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------------~Sl~ 116 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------------TSVW 116 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 445554332 33312333334444444444555555677666666655555555444443321 1234
Q ss_pred HHHHHHHHhhhhhhhhhchhhhhcCCCCHH----HHHHHHccccchhhHHHHHHHH
Q 014641 137 VTVGAVALSGLADALVQGGLIGAAGELPDR----YMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 137 i~l~~~~~~g~~~~~~qss~~~la~~fp~~----~~~a~~~G~g~aGv~~sll~ii 188 (421)
...++=++.|++.|..-+..--++..+|++ .++-+.+|+.+|++++.++.-.
T Consensus 117 ~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778888777664444555579964 3455677777777777665555
No 100
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.42 E-value=12 Score=39.37 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
+.+..++-+...+..++...+.+|...|.-+..+.++.+++.+..... . . ...+-..++.=.+.|+.+++.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s-~--~------~~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLS-K--S------APSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-H--H------hhhHHHHHHHHHHHHHHhHHH
Confidence 344556666666666666666666555533333333333333222111 1 0 113344455666777777776
Q ss_pred hchhhhhcCCC-CHHHHHHHHccccchhhHHHHHHHHH--HHhcccCccchhhhHHHH-HHHHHHHHHHHHHHHHHhccc
Q 014641 153 QGGLIGAAGEL-PDRYMQALVAGTAGSGVLVSVLRILT--KAVYTQDAIGLRKSANLY-FAVGIVVMVICIVFYNVAHRL 228 (421)
Q Consensus 153 qss~~~la~~f-p~~~~~a~~~G~g~aGv~~sll~ii~--~~~~~~~~~~~~~~~~~y-F~i~~~~~~~~~~~~~~l~r~ 228 (421)
.+..-=+.+-- |+++=++...=..++..++.++..+. ....++ ...+-| +....+..++.++...+++.+
T Consensus 134 ~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt------~~~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 134 TGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT------EDLWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred HHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC------CcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 66554444443 44555555555555555555544221 112221 112333 444555556666666677777
Q ss_pred hhh
Q 014641 229 PVI 231 (421)
Q Consensus 229 p~~ 231 (421)
|.+
T Consensus 208 Pk~ 210 (485)
T KOG0569|consen 208 PKY 210 (485)
T ss_pred cch
Confidence 765
No 101
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=93.02 E-value=13 Score=38.89 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc-cCch--hHHHHHHHHHHHHhhhhcc-c-cCCcccccchhHHHHHHHHhhhccccc
Q 014641 304 GIILIAGYNVFDLVGKSLTAIYLL-ENEK--VAIGGCFARLLFFPLFLGC-L-HGPKFFRTEIPVTLLTCLLGLTNGYLT 378 (421)
Q Consensus 304 ~~i~~~~fn~gD~iGR~~~~~~~~-~~~~--~l~~ls~~R~~fiplf~~~-~-~~p~~~~~d~~~~il~~lfgltnGy~~ 378 (421)
..+..++=|+.-.+|-.+..+... .++| +.+..++.=...+|+.-+. . .++--+++.+.++++-++.|+..|-..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 345556667777777776544332 2333 5444444334445543221 0 111115667778889999999998777
Q ss_pred hheeeeccCcCChhhHHHHhHHHHHHHHHHH
Q 014641 379 SVLMILAPKVVQLQHAETAGIVIVLFLVLGL 409 (421)
Q Consensus 379 t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl 409 (421)
+.+=.+-.+..+ ++|| +.+.+++-..|-
T Consensus 399 s~sRs~~~~LiP-~g~e--~efFgly~i~gk 426 (477)
T PF11700_consen 399 SASRSLFSRLIP-PGRE--AEFFGLYAITGK 426 (477)
T ss_pred HHHHHHHHHhCC-Cchh--hHHHHHHHHHHH
Confidence 655444334333 3444 455555555444
No 102
>PRK09669 putative symporter YagG; Provisional
Probab=92.99 E-value=2.5 Score=43.37 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHhhc-ccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhH
Q 014641 59 VDYFSY-LYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137 (421)
Q Consensus 59 ~dyf~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i 137 (421)
..||.+ ...+.+....+.....++.++...+..++.+|+..+.....+.++..+....+.. .. . . ....
T Consensus 252 ~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-----~~--~-~--~~~~ 321 (444)
T PRK09669 252 TLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-----IP--P-S--NVWL 321 (444)
T ss_pred hheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----hC--c-c--hHHH
Confidence 345443 2333333334444555666666556566777765544444444333322221111 11 1 1 1223
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcC
Q 014641 138 TVGAVALSGLADALVQGGLIGAAG 161 (421)
Q Consensus 138 ~l~~~~~~g~~~~~~qss~~~la~ 161 (421)
.++..++.|++.+..+....++.+
T Consensus 322 ~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 322 IFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777766666666654
No 103
>PRK15075 citrate-proton symporter; Provisional
Probab=92.93 E-value=12 Score=38.14 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcc--hhhhHHHHHHHHhhhhhhhhhchhhh-hcCCC
Q 014641 87 LVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY--DGFTVTVGAVALSGLADALVQGGLIG-AAGEL 163 (421)
Q Consensus 87 ~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~--~~f~i~l~~~~~~g~~~~~~qss~~~-la~~f 163 (421)
.+..-.+.+|+..|.-+..+..+..+..+..... + +.+.. ......++.-++.|++.+..-..... .+..+
T Consensus 73 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-----~-~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 146 (434)
T PRK15075 73 AIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV-----P-GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA 146 (434)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC-----C-cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence 4444566778887777777776665555443321 1 00000 00112234445666666554333333 33456
Q ss_pred CHH----HHHHHHccccchhhHHHHH
Q 014641 164 PDR----YMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 164 p~~----~~~a~~~G~g~aGv~~sll 185 (421)
|++ .++....++.++..++..+
T Consensus 147 p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 147 TPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 654 3444444444444444433
No 104
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=92.88 E-value=2.8 Score=43.59 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHhhhhhhhhhchhhhhcCCCCHHHH
Q 014641 139 VGAVALSGLADALVQGGLIGAAGELPDRYM 168 (421)
Q Consensus 139 l~~~~~~g~~~~~~qss~~~la~~fp~~~~ 168 (421)
++..++.+++.+..++..+++...++++..
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVSRRSL 381 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccChhhc
Confidence 334455566666677777777777776644
No 105
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=92.57 E-value=15 Score=38.26 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=33.6
Q ss_pred hHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 362 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 362 ~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.+...++.++..|....-.+.+..+.++++++...-.+.....++|-.+|+.++
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778887776666666666666665555554444444566666666544
No 106
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=92.22 E-value=0.87 Score=46.05 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 303 YGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
..-+....+.++-.+|.....+.. +..+|+.+.... +++....+++...+. ..+.+..++..++.|+..|-.....
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA--LLFVIGAILMGLAAF-ALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH--HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHhHH
Confidence 334566677777777777654432 234555443333 222211122211010 1111345667778898888777777
Q ss_pred eeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..+..++++|..+..+.......|..+|..++
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777878888999999999999999999998887
No 107
>PTZ00207 hypothetical protein; Provisional
Probab=91.55 E-value=2.9 Score=44.97 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhc-hhhhhcCCCCHH---
Q 014641 91 VFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG-GLIGAAGELPDR--- 166 (421)
Q Consensus 91 ~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qs-s~~~la~~fp~~--- 166 (421)
-.+.+|++.|.=+..+.++..+..+...+...-.. ...++..++.-++.|++.+.... +.......||++
T Consensus 82 G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~ 155 (591)
T PTZ00207 82 SFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGA 155 (591)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHH
Confidence 34566777666666777777666655443211000 01233333444566666655433 333345567754
Q ss_pred HHHHHHccccchhhH
Q 014641 167 YMQALVAGTAGSGVL 181 (421)
Q Consensus 167 ~~~a~~~G~g~aGv~ 181 (421)
.++.+..+.|+++.+
T Consensus 156 a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 156 VVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555666666654
No 108
>PRK10489 enterobactin exporter EntS; Provisional
Probab=91.50 E-value=11 Score=38.14 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhch
Q 014641 76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG 155 (421)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss 155 (421)
...+.+..++..++..++.+|.+.+..+..+.++..+.++... ..+ ......++..+.|++.+..+..
T Consensus 265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~g~~~~~~~~~ 332 (417)
T PRK10489 265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-----LMP-------MWILAVLCLALFGYLSAISSLL 332 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-----ccc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655665553332223344444433332211 111 1223344556677777776666
Q ss_pred hhhhcC-CCCHHHH
Q 014641 156 LIGAAG-ELPDRYM 168 (421)
Q Consensus 156 ~~~la~-~fp~~~~ 168 (421)
..++.. ..|+++-
T Consensus 333 ~~~~~~~~~p~~~~ 346 (417)
T PRK10489 333 QYTLLQTQTPDEML 346 (417)
T ss_pred HHHHHHhhCCHHHH
Confidence 666644 5677653
No 109
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=91.43 E-value=18 Score=36.89 Aligned_cols=49 Identities=27% Similarity=0.278 Sum_probs=37.1
Q ss_pred HHHhhhccccchheeeeccCcCChhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 014641 368 CLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSIVA 416 (421)
Q Consensus 368 ~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~-~~~~l~~Gl~~Gs~~s 416 (421)
++.|+|-|.....++.|..+.++++.|..+-.+ ..++..+|..+|+.++
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 468999999999999999888888777766554 4455677777777654
No 110
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=91.41 E-value=5.3 Score=39.97 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhh
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~ 157 (421)
...+..++.....-++.+|.+.+.-+..+.+...+..+..+. .+ ..+..+....+-|+.-++...+.+
T Consensus 248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA-----IE-------AFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh-----Hh-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555556778888776666666666655544322 11 223445567788888888888899
Q ss_pred hhcCCCCHHHH---HHHH--ccccchhhHHHHHH
Q 014641 158 GAAGELPDRYM---QALV--AGTAGSGVLVSVLR 186 (421)
Q Consensus 158 ~la~~fp~~~~---~a~~--~G~g~aGv~~sll~ 186 (421)
.+.+..|++.. |++. .+.|++..+++++.
T Consensus 316 ~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 316 RYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776553 4432 24455555544433
No 111
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=91.36 E-value=0.96 Score=43.55 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-ccCchh-HHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 303 YGIILIAGYNVFDLVGKSLTAIYL-LENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~-l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
..-.....+.+++.+++....+.. +.++|+ +.+..+...+...+.... ++.+..++..++.|+..|.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~ 107 (352)
T cd06174 35 QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPA 107 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcccccccHh
Confidence 344566778888888877754422 223343 344444444333222222 23345667777889988888877
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
...+.++..++|||..+..+.......|..+|..++-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred HHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77778888888899999999888888888888776643
No 112
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=91.32 E-value=2.3 Score=42.62 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.....+.+...+..++.-++.+|...+..+..+++...+.+..... .+ . . ....+..++.|++.+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~----~--~-~~~~~~~~~~g~~~~~~~ 326 (406)
T PRK11551 259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----AP----S--F-AGMLLAGFAAGLFVVGGQ 326 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----cC----c--H-HHHHHHHHHHHHHHHhHH
Confidence 3444556666777777667777765444444433333333322211 11 1 1 112234445566655566
Q ss_pred chhhhhcC-CCCHHH
Q 014641 154 GGLIGAAG-ELPDRY 167 (421)
Q Consensus 154 ss~~~la~-~fp~~~ 167 (421)
+..+++.. .+|++.
T Consensus 327 ~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 327 SVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHHHcchhh
Confidence 66666554 466654
No 113
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=1.8 Score=44.09 Aligned_cols=91 Identities=13% Similarity=0.236 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHh---cCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFY---AHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLAD 149 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~ 149 (421)
....+.+-.-.++-.+++++. .+|+.++.-+..|+.++..+.++... .+ .|...++.=.+-|+++
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-----g~-------sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-----GN-------SYPMLFVARSLQGVGS 173 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-----cc-------hhHHHHHHHHHhhhhH
Confidence 444455555555556666654 45888888889999888877765443 22 3445666677899999
Q ss_pred hhhhchhhhhcC-CCCHHHHHHHHccc
Q 014641 150 ALVQGGLIGAAG-ELPDRYMQALVAGT 175 (421)
Q Consensus 150 ~~~qss~~~la~-~fp~~~~~a~~~G~ 175 (421)
+....+-+++.+ .||.+--.+-..|.
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGi 200 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGI 200 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHH
Confidence 998888888776 68877654333333
No 114
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=90.54 E-value=24 Score=36.80 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhh------HH-HHhHHHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQH------AE-TAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~------re-~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
.++..++.++-.|-...+....-|+.++-+| || +.-..++|+.=+|..+|+.+.-+
T Consensus 330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456566666666666666777776333 12 45566888888888888765433
No 115
>PRK11462 putative transporter; Provisional
Probab=90.23 E-value=9.3 Score=39.60 Aligned_cols=50 Identities=12% Similarity=-0.046 Sum_probs=27.7
Q ss_pred HHHhchHHHhhccc-CCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceE
Q 014641 53 NAFITAVDYFSYLY-PEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVR 102 (421)
Q Consensus 53 N~~ita~dyf~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R 102 (421)
+...+..-||-..+ .+.+....+...+.+++++...+..++.+|+..+..
T Consensus 245 ~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~ 295 (460)
T PRK11462 245 CVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI 295 (460)
T ss_pred HHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 33334444555433 222223445567777777777777777777654433
No 116
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=90.02 E-value=0.97 Score=47.32 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhh-hHHHHHHHHhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF-TVTVGAVALSGLADAL 151 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f-~i~l~~~~~~g~~~~~ 151 (421)
.+.+......++...++.+++.+|...|.....++.++.+..+++.+.... .+ ..+.-..| .+..++..+.+++.|.
T Consensus 308 ~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~y~~i~~~~~~~~~f~~G~ 385 (485)
T KOG0569|consen 308 QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFL-SN-SFGSWLSYLCIAAIFLFIISFAIGP 385 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH-HH-HhhhHHHHHHHHHHHHHHHhhhcCC
Confidence 456677778888888888888999998888888888887776655443221 11 11111111 2333344555566666
Q ss_pred hhchhhhhcCCCCHHHHHHHHccccchhhHHHHHHHHHHHhcc
Q 014641 152 VQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKAVYT 194 (421)
Q Consensus 152 ~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~~~~~ 194 (421)
.--..+=-+-++|++.-.+. +++++..-.+.++++...+|
T Consensus 386 gpi~~fi~aELf~~~~R~aa---~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAA---QSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred CchhHHHHHHhCCccchHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 66666666667887554332 34556666666666665554
No 117
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=89.83 E-value=1.1 Score=45.46 Aligned_cols=141 Identities=13% Similarity=0.005 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhh-hhccCchhHH-HHHHHHHHHHhh
Q 014641 269 KWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAI-YLLENEKVAI-GGCFARLLFFPL 346 (421)
Q Consensus 269 ~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~-~~~~~~~~l~-~ls~~R~~fipl 346 (421)
+......++..+....++|-+...-.+....+....-....++++++.+.+..... ....++|+.+ +..++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~-- 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF-- 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH--
Confidence 44445556666666666766421111221223333345556667776555444322 2223445543 3333232222
Q ss_pred hhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 347 FLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 347 f~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.+-.. ++.+..++..++.|+.+|..........++..++|+|..+..+.......|..+|..++
T Consensus 91 -~~~~~~----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 155 (400)
T PRK11646 91 -ATMAIA----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG 155 (400)
T ss_pred -HHHHHh----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122111 22344566677788888876655555556667788898888888888888888777655
No 118
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=89.48 E-value=10 Score=38.60 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
......++......+...++.+|++.+.-+..+.++..+.+..... .+. ....+....+..++.|++.+...
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~-----~~~---~~~~~~~l~l~~~l~g~~~~~~~ 326 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY-----GDP---EYFGYALLFLSMIVYGCAFDFFN 326 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cCc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666777877666666666655554433221 110 11122333445666777777776
Q ss_pred chhhhh-cCCCCHHHH----HHHH-ccccchhhHHHHHH
Q 014641 154 GGLIGA-AGELPDRYM----QALV-AGTAGSGVLVSVLR 186 (421)
Q Consensus 154 ss~~~l-a~~fp~~~~----~a~~-~G~g~aGv~~sll~ 186 (421)
.....+ +..+|++.. +... ..+++++.++..+.
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666555 446886532 2222 34556666655544
No 119
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=89.45 E-value=30 Score=36.26 Aligned_cols=58 Identities=9% Similarity=-0.097 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
|.++.+...++.|+..+.++...+....+..+++.|.++..+..++...|-.+|+.++
T Consensus 381 s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 381 SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888999999999888888777777777888777766666666665555543
No 120
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=89.44 E-value=5.3 Score=41.09 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhhHHHHHhch-HHHhhccc
Q 014641 39 IIYFTLGLGFLLPWNAFITA-VDYFSYLY 66 (421)
Q Consensus 39 ~~f~llG~~~LlpwN~~ita-~dyf~~~~ 66 (421)
+...+...+....++.+.+- ..|+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~ 292 (465)
T TIGR00894 264 WAIWFAIFGHFWLYTILPTYLPTFISWVL 292 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555556655553 46666544
No 121
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=89.19 E-value=28 Score=35.45 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CC
Q 014641 85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-EL 163 (421)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~f 163 (421)
+..++.-.+.+|+..|.=+..+..+..+..+....... +. ..+ .......+++=++.|++.|....+...+.+ .+
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 153 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPG-YE--TIG-TWAPALLLLARLFQGLSVGGEYGTSATYMSEVA 153 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCC-ch--hHH-HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC
Confidence 33444444567776555555566555544443322100 00 000 011223344556777777766666666655 45
Q ss_pred CHH----HHHHHHccccchhhHHHHHHHH
Q 014641 164 PDR----YMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 164 p~~----~~~a~~~G~g~aGv~~sll~ii 188 (421)
|++ +.+....|+..+.+++.++..+
T Consensus 154 p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 154 VEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 3454555665555555544433
No 122
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=88.80 E-value=3.7 Score=41.46 Aligned_cols=106 Identities=11% Similarity=-0.012 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhhhhhhhhh-hccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....+.++-.+++...... .+.++|+.+..+. +++....+++.. .++.+..++.-++.|+.+|-........
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFA--VLLTLSCLLVSF----ANSFSLLLIGRACLGLALGGFWAMSASL 132 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH--HHHHHHHHHHHH----HChHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34456777777777765432 2334555433222 222211222221 1233556677788899998877777777
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
.++..++++|..+-.+.....++|..+|..++-
T Consensus 133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877777777777777666553
No 123
>TIGR00898 2A0119 cation transport protein.
Probab=88.72 E-value=2.2 Score=44.36 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccch
Q 014641 301 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 379 (421)
Q Consensus 301 ~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 379 (421)
++..-+...+|.+|-.+|..+..+.. +..+|+.++.+. ++.....+.+.. -++.+..++.-++.|+..|-...
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~--~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~ 199 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLST--LVTAVSGVLTAF----SPNYTVFLVFRLLVGMGIGGIWV 199 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH--HHHHHHHHHHHH----cccHHHHHHHHHHHHhhccchHH
Confidence 45556777888889888888765433 234555443332 111111111211 12334567777888999998888
Q ss_pred heeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 380 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 380 ~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
....+..+..++++|..++.+.......|..+|..++..
T Consensus 200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999888889998888877654
No 124
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=88.66 E-value=3.9 Score=40.36 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHH
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 110 (421)
+...+.+...+......++.+|...+..+..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 334555556666666666777776555455555443
No 125
>PRK09528 lacY galactoside permease; Reviewed
Probab=88.66 E-value=9.6 Score=38.54 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhh
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~ 157 (421)
...+...+.....-++.+|.+.+.-+..+..+..+....... .+ . . +.......+.|+..+......+
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~-----~~-----~-~-~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF-----AT-----G-P-LEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh-----cc-----c-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666777877666555555554444433221 11 1 1 1122334455666666655555
Q ss_pred hhcC-CCCHHH
Q 014641 158 GAAG-ELPDRY 167 (421)
Q Consensus 158 ~la~-~fp~~~ 167 (421)
.+.. .+|++.
T Consensus 338 ~~~~~~~~~~~ 348 (420)
T PRK09528 338 KYITLNFDVRL 348 (420)
T ss_pred HHHHHHcCccc
Confidence 5544 466654
No 126
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=88.42 E-value=6.2 Score=41.56 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=41.2
Q ss_pred HHHHHHhhhhhhHHHHHhchHHHhhcccCCC--ccchhhHHHHHHHHHHHHHHHHHhcCCCC--cceEehhHHH
Q 014641 39 IIYFTLGLGFLLPWNAFITAVDYFSYLYPEA--SVDRIFAVAYMLVGLFCLVIIVFYAHKSD--AWVRINVGLG 108 (421)
Q Consensus 39 ~~f~llG~~~LlpwN~~ita~dyf~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~Ri~~~~~ 108 (421)
+.|.+..++.-++=|.+.+-..++-..-.+. .-.+.+++.+-...++..++...+..|+. .+.|......
T Consensus 276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4555556666666666666555444431111 12356777888888888888888877764 4455443333
No 127
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=88.41 E-value=1.9 Score=41.92 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh-hhccCchhHHHH-HHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 303 YGIILIAGYNVFDLVGKSLTAI-YLLENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~-~~~~~~~~l~~l-s~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
..-+...++.++..++.....+ ..+.++|+.+.. .++..+..-+.......+. .+.+..++..++.|+.+|.....
T Consensus 35 ~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 35 VLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG--LNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777666433 223355554332 2323222211111111110 13345566777889988888777
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
...+.++..+++||..+..+......+|..+|..++-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77778888888899999998888888888888776543
No 128
>PRK10504 putative transporter; Provisional
Probab=88.35 E-value=10 Score=38.98 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHH
Q 014641 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA 113 (421)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~ 113 (421)
..+.+..+....+..++.+|.+.+.-+..+..+..+.
T Consensus 304 ~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 304 IPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALV 340 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 3344444444455556667776544444455544443
No 129
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.21 E-value=16 Score=40.19 Aligned_cols=305 Identities=17% Similarity=0.154 Sum_probs=147.1
Q ss_pred HHHHHhhhhhhHHHHHhchHHHhhcccCC-CccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHH
Q 014641 40 IYFTLGLGFLLPWNAFITAVDYFSYLYPE-ASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVP 118 (421)
Q Consensus 40 ~f~llG~~~LlpwN~~ita~dyf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~ 118 (421)
..+..|+.. --.|..+|-.| ++|+= ++-...+...|-+.+++..+....++.|...-.-|..|.+++.+..++..
T Consensus 105 ~~~~q~l~~-~y~~s~IttiE---rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a 180 (735)
T KOG3626|consen 105 AAFAQGLYV-GYFNSVITTIE---RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA 180 (735)
T ss_pred HHHHHHhhh-hhhhhhhhhhh---hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHh
Confidence 344555544 33455555442 34432 12245666778888888888777777665443444566666655444332
Q ss_pred Hhhhee-------------eccc---------------------------CCcchhhhHHHHHHHHhhhhhhhhhchhhh
Q 014641 119 VMDAVY-------------IKGR---------------------------VGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (421)
Q Consensus 119 ~~~~~~-------------~~~~---------------------------~~~~~~f~i~l~~~~~~g~~~~~~qss~~~ 158 (421)
+-+..+ ...+ ......+.+.++.-.+.|++.+-.+.--..
T Consensus 181 lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGis 260 (735)
T KOG3626|consen 181 LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGIS 260 (735)
T ss_pred ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCc
Confidence 211000 0000 001113444455566677777766654444
Q ss_pred hcCCC-----CHHHHHHHHccccchhhHHHHHHHHHHHhc-----c---cCccchhh-hHH-HHHHHHHHHHHHHHHHHH
Q 014641 159 AAGEL-----PDRYMQALVAGTAGSGVLVSVLRILTKAVY-----T---QDAIGLRK-SAN-LYFAVGIVVMVICIVFYN 223 (421)
Q Consensus 159 la~~f-----p~~~~~a~~~G~g~aGv~~sll~ii~~~~~-----~---~~~~~~~~-~~~-~yF~i~~~~~~~~~~~~~ 223 (421)
+.--+ .|-|.+.+.+-..++=+++.++-=++.-.. + -++.++|+ +++ +=|+++..+.++..+-++
T Consensus 261 YiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f 340 (735)
T KOG3626|consen 261 YIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF 340 (735)
T ss_pred cccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 245666666555555554444433322211 1 12344444 343 338888888888888888
Q ss_pred Hhccc-hhhHHHHhhhhhhhhhhhhhcc-CCCCcccc---hhHHHHHHHHH---HHHHHHHHHHhhhhhcccceeeeccc
Q 014641 224 VAHRL-PVIKYHEDLKIQAVNEEKEEKG-SLTGSMWR---SAVWHIVGRVK---WYGFGILLIYIVTLSIFPGYITEDVH 295 (421)
Q Consensus 224 ~l~r~-p~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~---~~~~~v~k~i~---~~~l~~fl~f~vTl~vFP~i~~~~~~ 295 (421)
.++|. |-.+...+.++.+ ..++|++ ..+..... .++.+.+|++. .++.. .+.-.+...++-|..+..++
T Consensus 341 ~fPk~lp~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~-~l~~~~~~~~~~G~~tFlPK 417 (735)
T KOG3626|consen 341 FFPKELPKSQKRKRARDLH--VLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLV-VLASVIESLAITGYITFLPK 417 (735)
T ss_pred hCcccCccccccchhhhhc--ccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHhhHHHhhHH
Confidence 88875 3222111111111 1111111 11111111 33444444433 33333 33334444455554332221
Q ss_pred c---c-C----C-CchHHHHHHHHHHhhhhhhhhhhhhhhccC---chhHHHHHHHHHHH-Hhhhhc-cc
Q 014641 296 S---E-I----L-KDWYGIILIAGYNVFDLVGKSLTAIYLLEN---EKVAIGGCFARLLF-FPLFLG-CL 351 (421)
Q Consensus 296 ~---~-~----~-~~w~~~i~~~~fn~gD~iGR~~~~~~~~~~---~~~l~~ls~~R~~f-iplf~~-~~ 351 (421)
. + . . +-..-.+.+..+.+|-++|-.+....++.. .++..+.+++=+++ +++|++ |.
T Consensus 418 yLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~ 487 (735)
T KOG3626|consen 418 YLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCE 487 (735)
T ss_pred HHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCC
Confidence 1 0 0 1 123335667788899999999876666532 24455556655555 666654 54
No 130
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=87.60 E-value=3.1 Score=40.99 Aligned_cols=107 Identities=10% Similarity=0.002 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
-.....+.++..+|.....+.. +.++|+.+.... ++.....+.+-. .++.+..++..++.|+..|...+....
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~ 116 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL--FIFALSSLGLAL----SNNIETLLVLRFVQAFGASAGSVISQA 116 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHH----HccHHHHHHHHHHHHcchhHHHHHHHH
Confidence 3456677777777776654322 234454332221 121111111111 122244566677888888877777666
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
..++..++++|..+..+.......|..+|..++-
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 117 LVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888887777877777766553
No 131
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=87.48 E-value=13 Score=37.10 Aligned_cols=77 Identities=6% Similarity=-0.122 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhh
Q 014641 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (421)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~ 158 (421)
..+..+......-++.+|.+.+.-+..+++...+..+.... .+ ..+..++..++.|++.++.......
T Consensus 249 ~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~l~g~~~~~~~~~~~~ 316 (382)
T PRK11128 249 GVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-----TT-------ALPWLIVIQILHCGTFTVCHLAAMR 316 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-----hh-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556667766555566566555544432221 11 2233345566678888888888888
Q ss_pred hcCCCCHHH
Q 014641 159 AAGELPDRY 167 (421)
Q Consensus 159 la~~fp~~~ 167 (421)
+....+++.
T Consensus 317 ~~~~~~~~~ 325 (382)
T PRK11128 317 YIAARPGSE 325 (382)
T ss_pred HHHHCCHhh
Confidence 776666544
No 132
>TIGR00895 2A0115 benzoate transport.
Probab=86.95 E-value=3 Score=41.05 Aligned_cols=104 Identities=19% Similarity=0.108 Sum_probs=63.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHH-HHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~-~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
.....+.++..+|..+..+.. +.++|+.+.... .-.+.. +.+... ++.+..++..++.|+..|........
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT---LLCALA----TNVTQLLILRFLAGLGLGGLMPNLNA 128 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHc----cchHHHHHHHHHHhcccccchhhHHH
Confidence 455677777777776654322 234444333222 111111 111111 12234566677888888877777777
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+..++++|..+..+......+|..+|..++
T Consensus 129 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 777777788898888888888888888887765
No 133
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=86.92 E-value=18 Score=37.23 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=16.6
Q ss_pred HHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 014641 139 VGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (421)
Q Consensus 139 l~~~~~~g~~~~~~qss~~~la~-~fp~~~ 167 (421)
++..++.|++.+.......++.. ..|++.
T Consensus 337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~ 366 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQR 366 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhHHH
Confidence 34555667766666666666544 355543
No 134
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=86.84 E-value=4.3 Score=40.14 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=63.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
....++.+++.+|.....+.. +.++|+.+.... ++..-..+.+-. .++.+..++..++.|+..|-.......+
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSI--VLFSAGTLACGF----APGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 445667777777766654432 235555443322 221111111111 1232445666778888877776666666
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
..+..++++|..+..+.......|..+|..++-
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999888888888888887776653
No 135
>PRK12382 putative transporter; Provisional
Probab=85.62 E-value=4.1 Score=40.73 Aligned_cols=148 Identities=14% Similarity=-0.032 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhh
Q 014641 269 KWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPL 346 (421)
Q Consensus 269 ~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls-~~R~~fipl 346 (421)
+...+..++.++..-...|-+-....++...+.+..-.....+.++..+++....+.. +.++|+.+... +...+..-.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4444455555554444445431111112122344455677888888888776654422 34556554333 222221111
Q ss_pred hhccccCCccc-ccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 347 FLGCLHGPKFF-RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 347 f~~~~~~p~~~-~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+...+... .+.+..++.-++.|+..|..........++..++|+|..+..........|..+|..++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~ 168 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG 168 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 22222112111 12233445556778877766555555666777788898888888888888887877665
No 136
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=85.06 E-value=16 Score=38.32 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=56.1
Q ss_pred HHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCC-CHH---
Q 014641 91 VFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL-PDR--- 166 (421)
Q Consensus 91 ~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~f-p~~--- 166 (421)
.++.+|.+...|+..|+++..+++..+..... +.+ +. .....+..+...++.|++..+.....++++... |++
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~-~~~-~~-~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg 417 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAK-FAN-DA-GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMG 417 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHH-hcC-CC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHH
Confidence 44577788889999999999888877655321 111 11 112233455667788888888888888887754 543
Q ss_pred -HHHHHHccccchhhHH
Q 014641 167 -YMQALVAGTAGSGVLV 182 (421)
Q Consensus 167 -~~~a~~~G~g~aGv~~ 182 (421)
+++.+..++++++.+.
T Consensus 418 ~~~g~~~l~~a~g~~~~ 434 (500)
T PRK09584 418 FIMGSWFLTTAGAALIA 434 (500)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455554444455444
No 137
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=84.94 E-value=3.6 Score=39.80 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=69.4
Q ss_pred HHHHHHHhhhhhhhhhhhhh-hccCchhH-HHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 306 ILIAGYNVFDLVGKSLTAIY-LLENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~-~~~~~~~l-~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
+....+.++-.++.....+. .+.++|+. .+..+.+.+..-+..+. .+.+..++..++.|+.+|........
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~ 108 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWLLLIARFLLGIGSGFFSPASNA 108 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHHHhhhccccccccccccccccc
Confidence 45556666666666665433 22344443 33344343331111111 23355677888899999888888888
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+.++..+++||..+-.+......+|..+|..++-.
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 109 LIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 88888888899999999999999999988777643
No 138
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=84.90 E-value=12 Score=37.62 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhh
Q 014641 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (421)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~ 158 (421)
.....++...+...+.+|.+.+.-+..+.++..+.++........ . . . ......+..++.|++.+........
T Consensus 260 ~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~-~--~~~~~~~~~~~~g~g~~~~~~~~~~ 332 (406)
T PRK15402 260 VFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--S--S-H--AYLWLTAGLSLYAFGIGLANAGLYR 332 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--c--c-c--cHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555666677665544555555554444433222111 1 0 1 1222334555566666665544433
No 139
>PRK09848 glucuronide transporter; Provisional
Probab=84.75 E-value=49 Score=33.73 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhh-------HHHHhHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQH-------AETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~-------re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++.+++.|+..|..........++.++.+| +.....+.+++..+|..+|..+.
T Consensus 322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777666666655555555454433 24556677788778888876654
No 140
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=84.55 E-value=3.7 Score=41.06 Aligned_cols=116 Identities=15% Similarity=0.008 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhhh-hccCchhHHHHHH-HHHHHHhhhhccccCCcc-cccchhHHHHHHHHhhhcccc
Q 014641 301 DWYGIILIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCF-ARLLFFPLFLGCLHGPKF-FRTEIPVTLLTCLLGLTNGYL 377 (421)
Q Consensus 301 ~w~~~i~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~-~R~~fiplf~~~~~~p~~-~~~d~~~~il~~lfgltnGy~ 377 (421)
+...-+...++.++..++.....+. .+.++|+++..+. ...+...........+.+ ..+-+..++.-++.|+..|..
T Consensus 50 ~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (399)
T PRK05122 50 AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129 (399)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhh
Confidence 3334466778888888887765443 3345666544433 222221111111111111 112223455667888888776
Q ss_pred chheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 378 TSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 378 ~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
........++..++++|..+..+.......|..+|..++
T Consensus 130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 168 (399)
T PRK05122 130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG 168 (399)
T ss_pred cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence 666555566777788888887777777777777776665
No 141
>PRK10429 melibiose:sodium symporter; Provisional
Probab=84.25 E-value=55 Score=33.85 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhh-------HHHHhHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQH-------AETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~-------re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++..++.|+..|.........-++.++.+| ....-...++..-+|..+|..+.
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677666666554444455444222 11344556666667777765544
No 142
>PRK11010 ampG muropeptide transporter; Validated
Probab=83.82 E-value=11 Score=39.51 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=19.4
Q ss_pred hhhhhhhhhchhhhhcCC-CCHHHHHHHHccccchhhHHH
Q 014641 145 SGLADALVQGGLIGAAGE-LPDRYMQALVAGTAGSGVLVS 183 (421)
Q Consensus 145 ~g~~~~~~qss~~~la~~-fp~~~~~a~~~G~g~aGv~~s 183 (421)
.|++.+......+.++.. ++.+..+...+..++++++.+
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~ 369 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVG 369 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455543 554444445555556655444
No 143
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=83.60 E-value=29 Score=35.44 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhh
Q 014641 80 MLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA 159 (421)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~l 159 (421)
+++.+...+...++.+|+..+.-+..+.+..++=...... .. ++ ......+.+....+-|+.=+....+...+
T Consensus 253 ~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~-----~~-~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~y 325 (400)
T PF03825_consen 253 VVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY-----FS-DP-WPFIVALQLLGQLLHGLTFGLFHAASVRY 325 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-----hc-CC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455555666667778877776666555555443332221 11 11 11111212222344566666666666665
Q ss_pred cC-CCCHHH---HHHHHc--cccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 014641 160 AG-ELPDRY---MQALVA--GTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRL 228 (421)
Q Consensus 160 a~-~fp~~~---~~a~~~--G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~ 228 (421)
.. ..|++. .|++.. ..|+++.+++++.=...-..+. ++ ......++.+.+++.++..+.+..+-|.
T Consensus 326 i~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~--~~-~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 326 IDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA--RG-MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--hh-hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 55 467654 455544 4577777777655432222111 11 1123345666666666666666665554
No 144
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=83.47 E-value=5.2 Score=39.22 Aligned_cols=106 Identities=14% Similarity=0.004 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
-.....+.++..++.....+.. +.++|+.+.... ++.....+.+-..+. +.+..++..++.|+.+|... .+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~-~~~~ 113 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAIPCLWAGLAVQ---SYSVLLLLRLFIGIAGGSFA-SCMP 113 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhchhhH-hHHH
Confidence 3456677777777777655432 234444332222 121111111111110 32445566777888776543 3344
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+..+++||..+..+...+...|..+|..++
T Consensus 114 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 114 WISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 455566778888888777766666666655543
No 145
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=83.22 E-value=3.1 Score=33.88 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
+...+..++.|+..|........+.++..++++|..+..+.......|..+|..++-
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence 445667788899998888777777788788888888888888887888777766543
No 146
>PRK10054 putative transporter; Provisional
Probab=83.21 E-value=6.2 Score=39.84 Aligned_cols=144 Identities=13% Similarity=-0.096 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhh-hccCchhH-HHHHHHHHHHHh
Q 014641 268 VKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIY-LLENEKVA-IGGCFARLLFFP 345 (421)
Q Consensus 268 i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~-~~~~~~~l-~~ls~~R~~fip 345 (421)
.|...+..++..+....++|-+.....+....+....-.....+.++..+++....+. .+.++|+. .+..+...+...
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 4555555555555555555543111111111222223344555666666665554332 22334443 333333333222
Q ss_pred hhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 346 LFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 346 lf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
++.. .++.+..++...+.|...+-.........++..++++|..+-.+.....++|..+|..++-.
T Consensus 89 ~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 89 AIPL-------VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 12212233333344444333333333344666777788888788888888888888776543
No 147
>TIGR00893 2A0114 d-galactonate transporter.
Probab=83.01 E-value=4.2 Score=39.68 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHH-HHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 382 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~-~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 382 (421)
-.....+.++..++.....+.. +.++|+.+ +..+...+...++.. ..+.+..++..++.|+..|.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~ 104 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF-------AGAYVSLYILRVLLGAAEAPFFPGII 104 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3556677788888777654432 23444432 222222221111111 11334566777888999888888777
Q ss_pred eeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
.+.++..++++|..+..+.......|..+|..++-
T Consensus 105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 88888888899999988888888888888876654
No 148
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=82.89 E-value=32 Score=39.75 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
..+...+.+..++..++.-++.+|...+..+..+.++..++++.+.. .. ..+..++..++.|++.+..
T Consensus 272 g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~g~~~~~~ 339 (1146)
T PRK08633 272 QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT-----AP-------SLASVLVLFFLFGFSAGLF 339 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH-----hh-------hHHHHHHHHHHHHHHHHHh
Confidence 34445556666666777677777766555555555554444433221 11 2233445566677777776
Q ss_pred hchhhhhcC-CCCHHHHH
Q 014641 153 QGGLIGAAG-ELPDRYMQ 169 (421)
Q Consensus 153 qss~~~la~-~fp~~~~~ 169 (421)
.....++.. ..|++..+
T Consensus 340 ~~~~~~~~~~~~p~~~rg 357 (1146)
T PRK08633 340 IVPLNALIQFRAPEKELG 357 (1146)
T ss_pred hHHHHHHHhhcCCccchh
Confidence 666666654 34555433
No 149
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=82.55 E-value=29 Score=36.13 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=80.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhh
Q 014641 71 VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADA 150 (421)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~ 150 (421)
....++.++++...++.=++-.++.|.+.+.-+..|..+..++.+..... ..|+..+++-.+.|++-+
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------------~~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------------NHFWQVLLCRGFVGIGEA 136 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccchh
Confidence 34455556666666666666677888888888888888887766543321 256667777777777766
Q ss_pred hhhchhhhhcC-CCCHHHHH--------HHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHH
Q 014641 151 LVQGGLIGAAG-ELPDRYMQ--------ALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVF 221 (421)
Q Consensus 151 ~~qss~~~la~-~fp~~~~~--------a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~ 221 (421)
......=++.+ .||+.-=+ +.-.|.|++++.++.+.=.+- . .+ .=|..+.++.+++.++
T Consensus 137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~--Wr---~af~~~avl~vi~~~L 204 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------W--WR---WAFRGSAVLGVIVGLL 204 (493)
T ss_pred hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------c--eE---EEEEeehHHHHHHHHH
Confidence 66555555544 46643211 223566666666654321111 0 00 1134455667777777
Q ss_pred HHHhccchh
Q 014641 222 YNVAHRLPV 230 (421)
Q Consensus 222 ~~~l~r~p~ 230 (421)
-+++.|.|.
T Consensus 205 ~~~f~~eP~ 213 (493)
T KOG1330|consen 205 VFLFVREPE 213 (493)
T ss_pred HHhhccCcc
Confidence 777777764
No 150
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=82.40 E-value=10 Score=38.78 Aligned_cols=51 Identities=12% Similarity=-0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGS 413 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs 413 (421)
.++..++.|+..|-..........+..++++|..+..+......+|-.+|.
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 344556677777765444444444556677888887777666666655544
No 151
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=82.29 E-value=4.8 Score=44.59 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=65.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.+...+.+|-.+|..+..+.. +..+|+.++.+. +++....+++.. -++.+..++.-++.|+..|-....+..+
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l--il~~i~~ll~af----a~s~~~llv~R~l~G~g~g~~~p~~~~~ 279 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL--SVNGFFAFFSSF----VQGYGFFLFCRLLSGFGIGGAIPIVFSY 279 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788877755433 234454433322 111111111111 1222445667778888887777777888
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
..+..++++|..+..++..+..+|..+|..++.
T Consensus 280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888988888888888888888776554
No 152
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=82.26 E-value=5.8 Score=41.46 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 382 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls-~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 382 (421)
-.....+++|-.+|..+..+.. ...+|+.+... +.-.+...+........ ...+.+..++.-++.|+..|-......
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~ 137 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSA 137 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3556778888888888765543 23555543222 21121111111111100 011124567777888999998888888
Q ss_pred eeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
.+..+..++++|..+..++..+..+|..+|..++..
T Consensus 138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888898999999999999999999999998887653
No 153
>PRK11663 regulatory protein UhpC; Provisional
Probab=82.08 E-value=8.5 Score=39.30 Aligned_cols=105 Identities=14% Similarity=-0.038 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....+.++-.+++....+.. +.++|+....+. ++.....+++.. .++.+..++.-++.|+..|-........
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL--IATGIINILFGF----SSSLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH--HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 445567777767666654432 235555433222 221111112111 1222333444556677777554444445
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..++++|..+..+......+|..+|..++
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888877778877776543
No 154
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=82.00 E-value=15 Score=36.11 Aligned_cols=56 Identities=27% Similarity=0.195 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.+++-|.++|++...+.....-..|..+++++-..|-..+.--.++|+++-++++
T Consensus 353 lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia 408 (459)
T KOG4686|consen 353 LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA 408 (459)
T ss_pred ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence 55677888899988777765555556678888888888888888888887766554
No 155
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=81.76 E-value=33 Score=33.45 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhc
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG 154 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qs 154 (421)
....+.....+..++..++.+|++.++-+..+..+.++..++... .+ +. .......+.|++.+..-.
T Consensus 183 ~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~---~~-----~~~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 183 FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH---GY-----VAMWFVLALGLFNSIMFP 249 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC---CH-----HHHHHHHHHHHHHHHHHH
Confidence 344566666667777777888887555444444444433322111 11 11 122345578888888888
Q ss_pred hhhhhcCC-CCH
Q 014641 155 GLIGAAGE-LPD 165 (421)
Q Consensus 155 s~~~la~~-fp~ 165 (421)
..++.+.. +|+
T Consensus 250 ~~~s~a~~~~~~ 261 (310)
T TIGR01272 250 TIFSLALNALGR 261 (310)
T ss_pred HHHHHHHhhhhh
Confidence 88888865 554
No 156
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=81.72 E-value=6.5 Score=39.94 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhhhhhhhhhh-hccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....|.++=.+|.....+. ....+|+.+.... +++....+.+... ++.+..++.-++.|+.+|-.....+.+
T Consensus 47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~ 120 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM--VLWGIASTATMFA----TGPESLYLLRILVGIAEAGFLPGILLY 120 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH--HHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455565655555554322 1234555443333 2222212222111 222445666778899888766666666
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..++++|..+..+.......|..+|..++
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66767788899998888888888888877665
No 157
>PRK15011 sugar efflux transporter B; Provisional
Probab=81.13 E-value=62 Score=32.30 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcCCCCcce
Q 014641 81 LVGLFCLVIIVFYAHKSDAWV 101 (421)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~ 101 (421)
...++...+.-++.+|+..+.
T Consensus 263 ~~~i~~~~~~G~l~dr~g~~~ 283 (393)
T PRK15011 263 GLEIPTMLIAGYFAKRLGKRF 283 (393)
T ss_pred HHHHHHHHHHHHHHHHhChHH
Confidence 333444445555566665543
No 158
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=80.96 E-value=10 Score=38.98 Aligned_cols=102 Identities=13% Similarity=-0.069 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhhhhhhhhhh-hccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
+....+.++..+|.....+. .+.++|+.++... ++.....+.+...+..-.+.+..++..++.|+..|.........
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~ 144 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 144 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH--HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44556666666666554332 2234455433332 22221111111101001122334555567787776543333333
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGL 409 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl 409 (421)
..+..++++|..+..+.......|.
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhh
Confidence 3444567778877777666665554
No 159
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=80.39 E-value=31 Score=35.44 Aligned_cols=171 Identities=11% Similarity=0.151 Sum_probs=90.4
Q ss_pred HHHHHHhhhhhhHHHHHhch-HHHhhcccCCCccc----hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHH
Q 014641 39 IIYFTLGLGFLLPWNAFITA-VDYFSYLYPEASVD----RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA 113 (421)
Q Consensus 39 ~~f~llG~~~LlpwN~~ita-~dyf~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~ 113 (421)
+..+++|. ---|+++-.. ..||...+++.... ......-............++.+|+..|.-...+.+++.+=
T Consensus 225 ~~l~v~g~--~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 225 FVLFVIGV--AAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 34444443 3345665543 46777777654332 22233333444455556667788888776655555554433
Q ss_pred HHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH-HHHHcc-ccchhhHHHHHHHHHH
Q 014641 114 LLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRYM-QALVAG-TAGSGVLVSVLRILTK 190 (421)
Q Consensus 114 l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~~-~a~~~G-~g~aGv~~sll~ii~~ 190 (421)
.+.... .+ .-+....+=.+=|+--+++--+.+-+.+ .+|++.. +.++.| |-..|+...+...+.-
T Consensus 303 i~~~~~-----~~-------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 303 IIGSGF-----AT-------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHhh-----hc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222111 11 1112233344455555666666666655 5888875 566776 5555666666666555
Q ss_pred HhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 014641 191 AVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRL 228 (421)
Q Consensus 191 ~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~ 228 (421)
...+ .. .-.-.|+.++.+.....+++.+.++|.
T Consensus 371 ~lyd----~~-G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 371 YLYD----RI-GFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred hhHh----hc-CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 4431 11 113478888888887888888777654
No 160
>PRK03545 putative arabinose transporter; Provisional
Probab=80.24 E-value=11 Score=37.74 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
+..++.-++.|+.+|...+....+.++..++|+|..+..+.......|..+|..++-
T Consensus 98 ~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 98 TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 445566677888888776666666677777888988888888888888887776653
No 161
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=79.96 E-value=19 Score=36.94 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred CCCccchhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccch-hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHH
Q 014641 30 PPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDR-IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLG 108 (421)
Q Consensus 30 p~d~~~l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~ 108 (421)
.+|.+.+....+..+| .-...... -..|++++|+.++.+. .++........+..-+-=.+..|+.-++-....++
T Consensus 217 ~~~~W~lsllY~~tFG--~Fvgfs~~--l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~ 292 (417)
T COG2223 217 NKDTWLLSLLYFATFG--GFVGFSAY--LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFV 292 (417)
T ss_pred CcchHHHHHHHHHHHH--HHHHHHHH--HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHH
Confidence 3455555555555555 22222222 1467888888765543 44444444444444443345566665555566666
Q ss_pred HHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHH----HHHHccccchhhHHHH
Q 014641 109 LFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYM----QALVAGTAGSGVLVSV 184 (421)
Q Consensus 109 ~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~----~a~~~G~g~aGv~~sl 184 (421)
.++++..+.... .+..+....++.........++++++.++++|.+....=++.+ +.+....|++|.....
T Consensus 293 ~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~ 367 (417)
T COG2223 293 GMALAAALLSLF-----LTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPL 367 (417)
T ss_pred HHHHHHHHHHcc-----ccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhH
Confidence 666555543321 1111112344555666777889999999999999886444432 3334445555544433
No 162
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=79.95 E-value=7.6 Score=39.82 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=65.8
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeec
Q 014641 307 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 385 (421)
Q Consensus 307 ~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 385 (421)
....|.++..++.....+.. +.++|+.+.... +++....+.|... ++.+..++..++.|+..|........+.
T Consensus 42 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~i 115 (485)
T TIGR00711 42 VITSYMLANAISIPLTGWLAKRFGTRRLFLIST--FAFTLGSLLCGVA----PNLELMIIFRVIQGFGGGPLIPLSFSTL 115 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH--HHHHHHHHHHhCc----CCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45566677777666544322 235555443332 2222222233222 2334456677788999998888888888
Q ss_pred cCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 386 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 386 p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
++..++++|..+..+......+|..+|..++
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 8888889999988888888888887776654
No 163
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=79.91 E-value=23 Score=36.87 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcce
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWV 101 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~ 101 (421)
...+..++.....-.+.+|+..+.
T Consensus 294 ~~~~~~~~~~~~~g~l~dr~grr~ 317 (490)
T PRK10642 294 AIMIGMLFVQPVMGLLSDRFGRRP 317 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH
Confidence 334444444444455566665443
No 164
>PRK10091 MFS transport protein AraJ; Provisional
Probab=79.86 E-value=8.3 Score=38.51 Aligned_cols=141 Identities=14% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhh-hccCchhHHHHHHHHHHHHh
Q 014641 267 RVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCFARLLFFP 345 (421)
Q Consensus 267 ~i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~~R~~fip 345 (421)
.+|...+..++.-......-|.+ +...++...++-..-.....++++-.+|+....+. .+.++|+...... ++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~ 80 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLV--ALCVI 80 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH--HHHHH
Confidence 34555555555555444444432 21111111111112345677888888888776543 3345555433322 22222
Q ss_pred hhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 014641 346 LFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 414 (421)
Q Consensus 346 lf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~ 414 (421)
..+++-.. ++.+..++..++.|+..|-..........+..++++|..+.........+|..+|..
T Consensus 81 ~~~l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 81 GNAMFTLS----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHHHHHh----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 22222211 223445666778888777655544444555556666666655555555555555443
No 165
>PRK03633 putative MFS family transporter protein; Provisional
Probab=79.68 E-value=7.6 Score=38.71 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccch
Q 014641 301 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 379 (421)
Q Consensus 301 ~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 379 (421)
+...-+....+.++..++.....+.. ...+|+.+.... ++.......+.. .++.+...+..++.|+..|-...
T Consensus 40 ~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~ 113 (381)
T PRK03633 40 TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS--LIFAAGCAGLGL----MVGFWSWLAWRFVAGIGCAMIWV 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHH
Confidence 33345677788888888887754432 233444332222 222222222221 12324445566777887775543
Q ss_pred heeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 380 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 380 ~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.......+..++++|..+-.......+.|..+|..++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 114 VVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322223444566777777777777777777777654
No 166
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=79.03 E-value=13 Score=37.12 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
....++.+++.++.....+.. +.++|+.+.... ++.....+.+-. .++.+..++..++.|+.+|+... ....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 130 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA--LGMGIVMVLMGL----AQNIWQFLILRALLGLLGGFVPN-ANAL 130 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhhhHHh-HHHH
Confidence 456677777777766543322 234444433222 221111111111 12224455666777887776533 2333
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++..++++|..+..........|..+|..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777766666666666665555443
No 167
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=78.57 E-value=12 Score=38.08 Aligned_cols=105 Identities=9% Similarity=0.026 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhhhhhhhhh-hhccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAI-YLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~-~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....|.+|-.+|.....+ ..+.++|+++.... +++....+.|... ++.+..++.-++.|+..|.........
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~~~~~~~~~~~~a----~~~~~l~~~r~l~Gi~~~~~~~~~~~~ 128 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA--LIFTLACAATLFT----TSMTQFLIARFIQGTSICFIATVGYVT 128 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776665433 22234555433332 3333333333322 232445666677888888766665555
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++..+++++..+..+......+|-.+|..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666776665555555555555555444
No 168
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=78.39 E-value=21 Score=37.22 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=48.3
Q ss_pred chhhHHHHHHhhhhhh------HHHHHhchH--HHhhcc-----cCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcce
Q 014641 35 HLAYIIYFTLGLGFLL------PWNAFITAV--DYFSYL-----YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWV 101 (421)
Q Consensus 35 ~l~y~~f~llG~~~Ll------pwN~~ita~--dyf~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 101 (421)
+.-.-+..+-|+|.+. --|.+.... -||+.. +|. ........+-.+.+++.++..=+++.++..|.
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps-~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPS-GVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 4445677788888643 334444332 333332 221 22344455566677777888888888877666
Q ss_pred EehhHHHHHHHHHHH
Q 014641 102 RINVGLGLFVVALLV 116 (421)
Q Consensus 102 Ri~~~~~~~~v~l~~ 116 (421)
-....+++++++.++
T Consensus 116 vYG~~liImIi~t~~ 130 (538)
T KOG0252|consen 116 VYGKELIIMIICSAL 130 (538)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666677777776653
No 169
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=77.84 E-value=44 Score=33.49 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=14.2
Q ss_pred HhhhhhhhhhchhhhhcCC-CCHH
Q 014641 144 LSGLADALVQGGLIGAAGE-LPDR 166 (421)
Q Consensus 144 ~~g~~~~~~qss~~~la~~-fp~~ 166 (421)
+.|+..+......+.+... +|.+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSAT 339 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHH
Confidence 4556666667777777775 4544
No 170
>PRK03699 putative transporter; Provisional
Probab=77.77 E-value=79 Score=31.53 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=23.7
Q ss_pred hHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceE
Q 014641 58 AVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVR 102 (421)
Q Consensus 58 a~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R 102 (421)
...|.++.+.-+. -...+...+.+...+..++...+.+|++.+..
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 273 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI 273 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 3456655443211 12333345555666666666677777766533
No 171
>PRK09952 shikimate transporter; Provisional
Probab=77.47 E-value=47 Score=33.92 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=15.0
Q ss_pred HHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 014641 141 AVALSGLADALVQGGLIGAAG-ELPDRY 167 (421)
Q Consensus 141 ~~~~~g~~~~~~qss~~~la~-~fp~~~ 167 (421)
...+.+++.+...+....+.+ .+|+++
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcch
Confidence 334446666655555555544 477755
No 172
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=76.59 E-value=23 Score=34.24 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~ 115 (421)
.+...+.+..++......++.+|+..+.-+..+..+..+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344556666666677777777776655444555555444443
No 173
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=76.43 E-value=1e+02 Score=32.14 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
.+++..+-.+..+....+...++.+..+...|..+...++..-.+|..++..+..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555556778888888888999988888888888777776654
No 174
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=76.38 E-value=27 Score=33.53 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=97.1
Q ss_pred HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHH-HHHHHHHHHHHHHHHHHhccc-hhhHHHHhhhhhhhhh
Q 014641 167 YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLY-FAVGIVVMVICIVFYNVAHRL-PVIKYHEDLKIQAVNE 244 (421)
Q Consensus 167 ~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~y-F~i~~~~~~~~~~~~~~l~r~-p~~~~~~~~~~~~~~e 244 (421)
+++.-..|-.++++++.+.-++..-. .+..++. +.+ +.+..++..+-++.|.++.++ ...+ +. ++|
T Consensus 7 ~s~~n~~gf~iG~ii~~ipF~~~~~~----~~~~~~~-W~~I~si~~lL~~IpLIly~ifGk~fd~~~---~~----~k~ 74 (267)
T PF07672_consen 7 LSQFNPWGFNIGTIIVNIPFLISSSV----VIALTNN-WQWILSIFILLIFIPLILYIIFGKNFDIYS---PK----EKQ 74 (267)
T ss_pred eeeeccccchhhHHHHHhhHHhcchH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccC---cc----ccc
Confidence 34444556677777776665443111 1122232 322 444445555666667666543 1110 00 001
Q ss_pred hhhhccCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhhhcccceeee-------ccc------ccCCCchHHHHHHHHH
Q 014641 245 EKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITE-------DVH------SEILKDWYGIILIAGY 311 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~v~k~i~~~~l~~fl~f~vTl~vFP~i~~~-------~~~------~~~~~~w~~~i~~~~f 311 (421)
++++ .. .+.+.+.++++|+=--+...+......-.+|||-..+. .+. +...-+|.-.+..-+|
T Consensus 75 ~k~~-~~---~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~f 150 (267)
T PF07672_consen 75 EKEN-ST---LSKKPSYKSILKEKETWKWILIYGIWLVVVVFPFTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILF 150 (267)
T ss_pred cccc-cc---ccccchHHHHHccchHHHHHHHHHHHheeEEEeccchhHhHhhhcCcccccccccccccchhhHHHHHHH
Confidence 1111 01 11235677777743333333333333344567732110 000 0111234444555678
Q ss_pred Hhhhhhhhhhhhhhhc--cCchhHHHHH-HHHHHHHhhhhcccc--CCcccccchhHHHHHHHHhhhccccchhee----
Q 014641 312 NVFDLVGKSLTAIYLL--ENEKVAIGGC-FARLLFFPLFLGCLH--GPKFFRTEIPVTLLTCLLGLTNGYLTSVLM---- 382 (421)
Q Consensus 312 n~gD~iGR~~~~~~~~--~~~~~l~~ls-~~R~~fiplf~~~~~--~p~~~~~d~~~~il~~lfgltnGy~~t~~m---- 382 (421)
..|-++|=.....+.. .+||+..... .+-.++..+-.+|.+ +|. + ..-...+.++|+-.|.+. ..+
T Consensus 151 v~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~---~-~~~~~~f~I~~Fl~G~f~-WgiQ~Vi 225 (267)
T PF07672_consen 151 VAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPG---N-AAGFAFFYIFGFLAGFFL-WGIQGVI 225 (267)
T ss_pred HHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcc---h-HHHHHHHHHHHHHHHHHH-HhhhHHH
Confidence 8888888665443333 2333332211 122333333334432 221 2 222333556666555554 222
Q ss_pred eeccCcCChhhHHHHhHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIVLFLVLGLAA 411 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~~~l~~Gl~~ 411 (421)
-+-|..-++.+.+..|..-++.=.+|-..
T Consensus 226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 226 LNLPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred hcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 23455545455556666666655555443
No 175
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=75.85 E-value=18 Score=36.01 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....+.++..++.....+.. +.++|+.+.... ++.....+.+... ++.+..++..++.|+..|.........
T Consensus 47 ~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~ 120 (394)
T PRK11652 47 AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM--SIFILGTLVALFA----HSLTVLIAASAIQGLGTGVGGVMARTL 120 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHHH----ccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345556666666655543321 234455433222 2222222222211 122345556667788777665555445
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
.++..+++++..+..........|..+|..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566667666666666666555555443
No 176
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=75.30 E-value=8.6 Score=40.30 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccceeeeccc--ccCCCchHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHH
Q 014641 265 VGRVKWYGFGILLIYIVTLSIFPGYITEDVH--SEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLL 342 (421)
Q Consensus 265 ~k~i~~~~l~~fl~f~vTl~vFP~i~~~~~~--~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R~~ 342 (421)
+|-+|...++-|+..+-...++|+.-+-..+ .+...+++- +.+....+|=.++-..-.++.-++.+.-+-+.+.|++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 4667777888888888777778775322111 222233333 4566688998888887766654444222334445554
Q ss_pred HHh--hhhcccc-CCcccccchhHHHHHHHHhhhccccchheeeecc-CcCChhhHHHHhHHH--HHHHHHHHHHHHHHH
Q 014641 343 FFP--LFLGCLH-GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP-KVVQLQHAETAGIVI--VLFLVLGLAAGSIVA 416 (421)
Q Consensus 343 fip--lf~~~~~-~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p-~~v~~~~re~ag~~~--~~~l~~Gl~~Gs~~s 416 (421)
.+. +..+|.. .|.- +-|.+.+-=++.|+.+|=.+.+==..+. ..++++-|..|+.-. .+...+|-.+|.+++
T Consensus 112 ~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNG--VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 442 2222332 2211 2233333344677776655443222222 223444455554444 555556666665554
Q ss_pred H
Q 014641 417 W 417 (421)
Q Consensus 417 ~ 417 (421)
.
T Consensus 190 ~ 190 (488)
T KOG2325|consen 190 P 190 (488)
T ss_pred h
Confidence 3
No 177
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=74.73 E-value=70 Score=33.49 Aligned_cols=82 Identities=10% Similarity=0.065 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
+++...+.+.+.+..+..-.+.+++..|.-+..+.++.++..++.... . .+...++.=++.|++.|..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~-------~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----P-------SWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----h-------hHHHHHHHHHHhccchhhh
Confidence 588888888888888888888888888888888888877766654331 1 2233455667778887777
Q ss_pred hchhhhhcCCCCHH
Q 014641 153 QGGLIGAAGELPDR 166 (421)
Q Consensus 153 qss~~~la~~fp~~ 166 (421)
+...--+.+-..|+
T Consensus 160 ~~~~piy~sEiap~ 173 (513)
T KOG0254|consen 160 SVLAPVYISEIAPA 173 (513)
T ss_pred hhcchhhHhhcCCh
Confidence 76665555554443
No 178
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=74.63 E-value=38 Score=27.14 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhh
Q 014641 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (421)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~ 158 (421)
+.+..++.....-++.+|.+.|..+..+..+..+..+.... .+ .+...++...+.|++.+..+.....
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~g~~~~~~~~~~~~ 74 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----SS-------NITVLIIARFLQGFGAAFALVAGAA 74 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----hc-------cHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555555667766555444444444433332211 11 2233445566777777777666666
Q ss_pred hcC-CCCHHH----HHHHHccccchhhHHHH
Q 014641 159 AAG-ELPDRY----MQALVAGTAGSGVLVSV 184 (421)
Q Consensus 159 la~-~fp~~~----~~a~~~G~g~aGv~~sl 184 (421)
+.. .+|++. .+....++.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 105 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPP 105 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHH
Confidence 544 456543 33444455555544443
No 179
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=74.55 E-value=53 Score=33.55 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVP 118 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~ 118 (421)
.......+.+++..++..++.+|+..|.-...+..+..++.+.+.
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 344455666666677766777777666556666666666555443
No 180
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=74.43 E-value=1e+02 Score=32.26 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred HHHHHhchHHHhhcc-cCCCccch-hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 51 PWNAFITAVDYFSYL-YPEASVDR-IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 51 pwN~~ita~dyf~~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
..|..-+..-||-+. .++++... .....+....+.+....+.+.+|+..|.-...+.++.++.-..+- +..
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~-----f~~-- 323 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY-----FTP-- 323 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH-----hhc--
Confidence 355556666776654 34444443 444555566666577778888888766666666555554443321 111
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHHHHHHH
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTK 190 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~ 190 (421)
.+ .....++..++.+++.+....-.-++.+--+ -.+-+-+|.=..|+.-+...+.-|
T Consensus 324 -~~--~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v--Dyge~~TG~R~eGi~~s~~tF~~K 380 (467)
T COG2211 324 -AG--SVVLIVVALIIAGVGTGIANPLPWAMVADTV--DYGEWKTGVRREGIVYSGMTFFRK 380 (467)
T ss_pred -Cc--chHHHHHHHHHHHHHhhccccccHHHhcchh--hHHHHHhCCCchhhHHHHHHHHHH
Confidence 11 2223334444555555554443333333221 123455666666666665555444
No 181
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=73.76 E-value=17 Score=38.10 Aligned_cols=113 Identities=16% Similarity=0.026 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccc
Q 014641 300 KDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLT 378 (421)
Q Consensus 300 ~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~ 378 (421)
+.|.......+|.+|..+|-.+..... ...||.++..+. ++.+..=+.+... ++.+.++++-++-|+..+=..
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~--~~~~i~~~~~a~a----~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSL--LLFIIFGILTAFA----PNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHH--HHHHHHHHHHHHh----CcHHHHHHHHHHHHhhccchh
Confidence 456677778899999999988853322 245666555554 2222111222222 233557888889999998888
Q ss_pred hheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 379 SVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 379 t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+....+..+-+.+++|..++.+..+....|...-...+++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~ 229 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYI 229 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999777777777666666654
No 182
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=73.70 E-value=14 Score=37.66 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHH
Q 014641 265 VGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLF 343 (421)
Q Consensus 265 ~k~i~~~~l~~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~f 343 (421)
.+.++...++.|..=..++..=+= .++.-++-..+.=..-.++..|.++-.+|--+..... ..++|+++.... .+|
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gL-Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l--~lF 88 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGL-LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL--ALF 88 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhc-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH--HHH
Confidence 356677777777766666643322 2221111111111122457788888888887754433 346666544433 333
Q ss_pred HhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHH
Q 014641 344 FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAG 412 (421)
Q Consensus 344 iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~G 412 (421)
+.==++|...|++ +...+-=++.|+++|-+-+.....+.+.+++++|..|-.++...+++.+.+|
T Consensus 89 i~~n~l~alAp~f----~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 89 IVSNLLSALAPSF----AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred HHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 3212223333432 3345556688999999999999999999999999988887766555544443
No 183
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=73.69 E-value=22 Score=35.37 Aligned_cols=106 Identities=11% Similarity=-0.024 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
-+...++.++..++.....+.. +.++|+.+.... +++......+...+ +.+..++..++.|+..|........
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~--~~~~i~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~ 114 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA--ALFIIASLLCSLAE----TSSLFLAGRFLQGIGAGCCYVVAFA 114 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH--HHHHHHHHHHHHhC----cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456677777777666544322 234444332221 22221111221111 2233455566778888877776666
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+.++..++++|..+..+.......|..+|..++
T Consensus 115 ~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 115 ILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888877776666666666665554
No 184
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=73.25 E-value=30 Score=40.16 Aligned_cols=31 Identities=13% Similarity=-0.191 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH
Q 014641 138 TVGAVALSGLADALVQGGLIGAAG-ELPDRYM 168 (421)
Q Consensus 138 ~l~~~~~~g~~~~~~qss~~~la~-~fp~~~~ 168 (421)
.++..++.|++.+.......++.. ..|+++.
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 368 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHR 368 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccc
Confidence 445566677777777766666644 4565543
No 185
>PRK11462 putative transporter; Provisional
Probab=72.83 E-value=1.2e+02 Score=31.29 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHhhhhhhhhhchhhhhcCCCCH------HHHHHHHccccchhhHHHHH
Q 014641 139 VGAVALSGLADALVQGGLIGAAGELPD------RYMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 139 l~~~~~~g~~~~~~qss~~~la~~fp~------~~~~a~~~G~g~aGv~~sll 185 (421)
.+.-.+...+-+..+-..-++.+.+.+ +..+.-+.|..+++.+++++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566666666666666665543 23444555655656555554
No 186
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=72.24 E-value=1.3e+02 Score=31.44 Aligned_cols=84 Identities=10% Similarity=0.077 Sum_probs=44.2
Q ss_pred CcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHH
Q 014641 98 DAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALV 172 (421)
Q Consensus 98 ~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~ 172 (421)
+.-.|+..|+++..++++...+....+... +.....+.....-++.|++-++.....++.+. .-|+++ ++.++
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 344478888888776665432211112211 11222333445566778888887777676665 456665 34444
Q ss_pred ccccchhhHHH
Q 014641 173 AGTAGSGVLVS 183 (421)
Q Consensus 173 ~G~g~aGv~~s 183 (421)
.-+++|+.++.
T Consensus 422 l~~~ig~~lg~ 432 (489)
T PRK10207 422 LTQAAAFLLGG 432 (489)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 187
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=71.70 E-value=23 Score=37.71 Aligned_cols=162 Identities=13% Similarity=0.181 Sum_probs=96.7
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcc-cCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYL-YPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
..+.-++.|.+..+-||.. ||+-+ ....+ ...+..+..-..-+..-..-.++.+|+.+..-+..++..+.+=+
T Consensus 376 ff~~av~mG~g~~lv~tFL-----fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf 450 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFL-----FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRF 450 (618)
T ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHH
Confidence 4456678999999999998 66643 22222 23333333333444444444567788888777888888887766
Q ss_pred HHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH---HHHHH------ccccchhhHHHH
Q 014641 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY---MQALV------AGTAGSGVLVSV 184 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~~---~~a~~------~G~g~aGv~~sl 184 (421)
+.+..+ . .-|.++.+=++.|+..+.+=.++.++++. -||+. .|+++ .|-|++.+++-.
T Consensus 451 ~~~S~L-----~-------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 451 LYYSYL-----Q-------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHHHHh-----c-------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 654332 1 22456677788898888888888888775 66654 34433 233444433322
Q ss_pred HHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 014641 185 LRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVA 225 (421)
Q Consensus 185 l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l 225 (421)
+- + +-+. ..++-+|++++++.++..+++-+.
T Consensus 519 ~v---~------~fg~-~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 519 VV---E------RFGA-RTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hh---e------eehh-HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11 0 1111 335667788877777666666543
No 188
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=71.59 E-value=1.4e+02 Score=31.49 Aligned_cols=132 Identities=10% Similarity=0.177 Sum_probs=70.6
Q ss_pred Cccc-hhhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCcc------chhhHHHHHHHHHHHH-H---HHHHhc--C-CC
Q 014641 32 DTFH-LAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV------DRIFAVAYMLVGLFCL-V---IIVFYA--H-KS 97 (421)
Q Consensus 32 d~~~-l~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~------~~~~~~~~~~~~l~~~-~---~~~~~~--~-~~ 97 (421)
||++ .+++.+++.++..-.-|+=.-+....|.++.-|.+. ..++...+-+..++.. + +-.+.. + +.
T Consensus 263 er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~ 342 (493)
T PRK15462 263 QRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTV 342 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4433 477777777777777777666777777765433331 2233222222222111 1 112221 2 23
Q ss_pred CcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHH
Q 014641 98 DAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR 166 (421)
Q Consensus 98 ~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~ 166 (421)
+...+...|+++..+++.++.+... ..+ +.+. ...+..+....+.+++-=.....-+++.+..-|+
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~-~~~-~~~~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~ 408 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSAR-WSA-MYGH-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP 408 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh-hcC-CCCC-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence 4555678888888888776654322 222 1122 2333345556667777777777777777765554
No 189
>PRK12307 putative sialic acid transporter; Provisional
Probab=70.96 E-value=19 Score=36.25 Aligned_cols=106 Identities=11% Similarity=-0.069 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 383 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 383 (421)
.....++.++-.+|.....+.. +.++|+.+.... ++.......+-. .++.+..++.-++.|+..|-..+....
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~--~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~ 129 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI--VAYSVGTGLSGL----ASGVIMLTLSRFIVGMGMAGEYACAST 129 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455667777777666544322 235555433322 222111111111 122234556667778877766666666
Q ss_pred eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 384 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 384 ~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..+..++|+|..+..+......+|..+|..+.
T Consensus 130 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 130 YAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 666777788888888888888788877776543
No 190
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=70.36 E-value=1.3e+02 Score=30.83 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=24.5
Q ss_pred hhhhhhhhhchhhhhcCCCCHH---HHHHHHccccchhhHHHHHHHH
Q 014641 145 SGLADALVQGGLIGAAGELPDR---YMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 145 ~g~~~~~~qss~~~la~~fp~~---~~~a~~~G~g~aGv~~sll~ii 188 (421)
..+++-..++-..-.+..-|.+ ..+.+..-..+++++++.+.-.
T Consensus 100 ~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 100 YAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred HHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455666666666666654 3334445566677777665533
No 191
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=69.44 E-value=1.3e+02 Score=31.26 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=76.8
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcc-cCCC--cc---chhhHHHHHHHHHHHHHHH----HHhcCC---CCcceEe
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYL-YPEA--SV---DRIFAVAYMLVGLFCLVII----VFYAHK---SDAWVRI 103 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~-~~~~--~~---~~~~~~~~~~~~l~~~~~~----~~~~~~---~~~~~Ri 103 (421)
.++.+++..+..-..|+-.-+....|.++ .+.+ .+ ...+...+.+..++.+-.. .++.+| .+...|+
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 45556666666666666666654444432 2221 11 1122222222222222221 133333 2344477
Q ss_pred hhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCC-CHH----HHHHHHccccch
Q 014641 104 NVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL-PDR----YMQALVAGTAGS 178 (421)
Q Consensus 104 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~f-p~~----~~~a~~~G~g~a 178 (421)
..|.++..+++....+.. .+.+ + +....++..+...++.|++-.+......++.+.. |++ +++.+..+.+++
T Consensus 353 ~~G~~l~~~~~~~~~~~~-~~~~-~-~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g 429 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASI-WFAD-A-GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMG 429 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcC-C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 888888877776654321 1111 1 1123445556677788899999888888888765 543 455555666666
Q ss_pred hhHHHHH
Q 014641 179 GVLVSVL 185 (421)
Q Consensus 179 Gv~~sll 185 (421)
..++..+
T Consensus 430 ~~l~~~~ 436 (475)
T TIGR00924 430 SLLGGYL 436 (475)
T ss_pred HHHHHHH
Confidence 5555443
No 192
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=68.30 E-value=55 Score=33.58 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=80.2
Q ss_pred hhHHHHHHhhhhhhHHHHHhchHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHH
Q 014641 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (421)
Q Consensus 37 ~y~~f~llG~~~LlpwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~ 116 (421)
+...|+-.|+=. .-|+.+.+-.... +=.++.....+...+...-.+..++...+.+|++.++-.....+..++.++.
T Consensus 242 vl~~FlYVG~Ev-a~gsfl~~y~~~~--~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~ 318 (422)
T COG0738 242 VLAIFLYVGAEV-AIGSFLVSYLEEL--LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA 318 (422)
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 556777788644 4477777643211 1112233445555666666666777777777777666554444333333332
Q ss_pred HHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHHHHccccchhhHHHHHHHHHHHh
Q 014641 117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQALVAGTAGSGVLVSVLRILTKAV 192 (421)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~~~~a~~~G~g~aGv~~sll~ii~~~~ 192 (421)
.. .++ + .+.+..+.++|..+++.-.+.++++-. +| ++++.-+..-.++.+-++++-.+.-+.
T Consensus 319 ~~-----l~~---g-----~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 319 VA-----LIG---G-----VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HH-----Hhc---C-----hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecchHHHHHHHHH
Confidence 22 222 1 345567788999999999999999985 55 555544444444444444444444443
No 193
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=67.70 E-value=38 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.057 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehh
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINV 105 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 105 (421)
....+.+..++..++..++.+|...+.|...
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 287 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPL 287 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence 3445556666666666666665443444433
No 194
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.54 E-value=1.6e+02 Score=30.72 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHH
Q 014641 134 GFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQA 170 (421)
Q Consensus 134 ~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~~~~a 170 (421)
.+.+.+++..+.|++.+..|+..+.+.+. +|.+-.|+
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~ 389 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQA 389 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHH
Confidence 47788999999999999999999888885 55555443
No 195
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=67.53 E-value=12 Score=37.79 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=42.9
Q ss_pred HHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 364 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 364 ~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
++.-++.|+..|......+...|+.++++||..+..++......|..+|..++
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445779999988888888899999999999998888888887777776654
No 196
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=67.51 E-value=49 Score=34.55 Aligned_cols=107 Identities=12% Similarity=-0.098 Sum_probs=53.5
Q ss_pred HHHHHHhhhhhhhhhhhhh-hccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeec
Q 014641 307 LIAGYNVFDLVGKSLTAIY-LLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 385 (421)
Q Consensus 307 ~~~~fn~gD~iGR~~~~~~-~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 385 (421)
+..++.++=-++|....+. .+..+|+....+.+ +..+|.+......+...++-+..+++-++.|+..+ .....+-..
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l-l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~-~f~~~~~~v 152 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA-ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGA-NFASSMGNI 152 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHH-hHHHHHHHH
Confidence 3445555555666664332 23355554333331 23455443322111122343456667778888744 333344445
Q ss_pred cCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 014641 386 PKVVQLQHAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 386 p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
.+--+++||..|-.+..-.-+.|..++..+
T Consensus 153 s~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 153 SFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 555567778887777654444555544443
No 197
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=67.01 E-value=86 Score=31.19 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC
Q 014641 83 GLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE 162 (421)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~ 162 (421)
.........++.+|++.+..+..+.++..+....... .+ . . +..+....+.|++.+..+.....+...
T Consensus 267 ~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-----~~----~--~-~~~~~~~~l~g~~~~~~~~~~~~~~~~ 334 (396)
T TIGR00882 267 NALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-----AT----T--A-LEVVILKMLHAFEVPFLLVGCFKYITS 334 (396)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-----cC----C--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444456677777665555555554444332221 11 1 1 112334455666666666555555543
Q ss_pred -CCHHH
Q 014641 163 -LPDRY 167 (421)
Q Consensus 163 -fp~~~ 167 (421)
.|++.
T Consensus 335 ~~~~~~ 340 (396)
T TIGR00882 335 QFDVRL 340 (396)
T ss_pred hCCcce
Confidence 44443
No 198
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=67.01 E-value=28 Score=33.96 Aligned_cols=28 Identities=14% Similarity=0.002 Sum_probs=15.5
Q ss_pred HHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 014641 140 GAVALSGLADALVQGGLIGAAG-ELPDRY 167 (421)
Q Consensus 140 ~~~~~~g~~~~~~qss~~~la~-~fp~~~ 167 (421)
....+.|++.+..++....... .+|++.
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 345 (394)
T TIGR00883 317 FLVLGLALIGGMYTGPMGSFLPELFPTEV 345 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCccc
Confidence 3445556666566555555544 467543
No 199
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=66.58 E-value=98 Score=31.70 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH-hcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVF-YAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADAL 151 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~ 151 (421)
..++-......++.....-+ ..++.+.+.-...++...++++..+.+.. ..+ +..- .-..+++.|+++|+
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~--~~~----~~~~---~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG--PLG----SPWL---FRPGVFLLGLGNGL 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH--hcc----cchH---HHHHHHHHHHhhhH
Confidence 34444444445555444444 34454443333455566666665544332 222 1112 23355667777777
Q ss_pred hhchhh----hhcCC-CCHHHHHHHHccc----cchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHH
Q 014641 152 VQGGLI----GAAGE-LPDRYMQALVAGT----AGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFY 222 (421)
Q Consensus 152 ~qss~~----~la~~-fp~~~~~a~~~G~----g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~ 222 (421)
...+.. .+++. -..-++++|-.-| |++++++..++-+.....+++ ....--.=|.+-++..++|+...
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~---~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNS---PALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---cchHHHHHHHHHHHHHHHHHHHH
Confidence 665544 44432 1134777776655 566777788888888776531 11222233566666666676655
Q ss_pred HHhcc
Q 014641 223 NVAHR 227 (421)
Q Consensus 223 ~~l~r 227 (421)
.-+.|
T Consensus 395 ~~l~~ 399 (403)
T PF03209_consen 395 GRLDR 399 (403)
T ss_pred HHhhh
Confidence 44444
No 200
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=66.06 E-value=47 Score=33.70 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++.=++.|+..|-....+..+..+..++++|..+..+.......|..+|..+.
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 455556888888866666667777777778888887777777777877776553
No 201
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=65.69 E-value=45 Score=29.32 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccch
Q 014641 300 KDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 379 (421)
Q Consensus 300 ~~w~~~i~~~~fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 379 (421)
+.....++...|.++-+++-.+ .+...+|+.+++.. +..+++..++..|. .+..++--.+.|+..+.+-+
T Consensus 39 G~~slai~Y~~~~~s~l~~P~i---v~~lg~K~sm~lg~---~~y~~y~~~~~~~~----~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSI---VNKLGPKWSMILGS---LGYAIYIASFFYPN----SYTLYPASALLGFGAALLWT 108 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHH---HHHHhhHHHHHHHH---HHHHHHHHHHHhhh----HHHHHHHHHHHhhhhHHhhH
Confidence 4455567778888888876444 33445676544433 33344556654332 25556666678887776655
Q ss_pred heeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 014641 380 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 419 (421)
Q Consensus 380 ~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~~ 419 (421)
---.+-.+..++++|+.-..+-.-....+...|.++.++.
T Consensus 109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333455555544444444556788888877653
No 202
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=65.49 E-value=1.7e+02 Score=30.06 Aligned_cols=106 Identities=22% Similarity=0.179 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcc--CchhH--HHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 305 IILIAGYNVFDLVGKSLTAIYLLE--NEKVA--IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~~~--~~~~l--~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
+-+..++..|-++|-.+..+...+ +++++ +.+...=..|.- .++ .. +..+.+..-.-++++|+.||.+.+-
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l-ii~--a~--~~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL-IIL--AG--PLGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHH--HH--hcccchHHHHHHHHHHHhhhHHHHH
Confidence 455678888888888887664442 22221 222221122221 111 12 2445566778889999999998774
Q ss_pred eeeeccCcCChh----hHHHHhHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQ----HAETAGIVIVLFLVLGLAAGSIV 415 (421)
Q Consensus 381 ~mi~~p~~v~~~----~re~ag~~~~~~l~~Gl~~Gs~~ 415 (421)
+....-+..+++ ....-|..=+.+-.+|..+|+.+
T Consensus 322 als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 322 ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432221111111 12233444455566666666543
No 203
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.71 E-value=1.9e+02 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcCCCCH----HHHHHHHccccchhhHHHHHHHH
Q 014641 138 TVGAVALSGLADALVQGGLIGAAGELPD----RYMQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 138 ~l~~~~~~g~~~~~~qss~~~la~~fp~----~~~~a~~~G~g~aGv~~sll~ii 188 (421)
.....+++|++.|++-.+-=++.+..++ +-..+.+++-+-++.+.-..-+.
T Consensus 105 ~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 105 LYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred HHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 4568889999999843333333333332 23467777777777665543333
No 204
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=63.17 E-value=43 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
+..++..++.|+..|.+.+....+..+..++++|+.+.++......+|..+|..++-
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888887766666656566777888888888888888888877654
No 205
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=62.35 E-value=1.4e+02 Score=29.54 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=80.1
Q ss_pred cchhhHHHHHHhhhhhhHHHHHhc-hHHHhhcccCCC--ccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHH
Q 014641 34 FHLAYIIYFTLGLGFLLPWNAFIT-AVDYFSYLYPEA--SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (421)
Q Consensus 34 ~~l~y~~f~llG~~~LlpwN~~it-a~dyf~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 110 (421)
+...++.-+.+-+...+.|--+++ +..+|++||.-+ +-.+..+..|.++....-..-.. ..|...+.-...+-.+.
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i-~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI-SDKYGFNLWWVASACIL 340 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh-HhhhcceehhHHHHHHH
Confidence 344444545555556667777777 578899998533 23456667777776655443222 22322223222222111
Q ss_pred HHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchh------hHHHH
Q 014641 111 VVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSG------VLVSV 184 (421)
Q Consensus 111 ~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aG------v~~sl 184 (421)
.+..-...+++- ..+ -+...+.|.+-+++..+.--..+..=|++ +.|+|.+= +--++
T Consensus 341 ----tl~~H~~l~Ft~--lsP-------y~~m~~lGLsysllAcslWP~va~~vpE~----qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 341 ----TLLGHSGLFFTF--LSP-------YTSMTFLGLSYSLLACSLWPCVASLVPEE----QLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred ----HHHHhhhHHhhh--ccH-------HHHHHHHhhhHHHHHHHHhhhhhhhCCHH----HhcchHHHHHHHHhhhhhH
Confidence 111110011111 011 12455678887887777766655443433 33444321 11222
Q ss_pred HHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 014641 185 LRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAH 226 (421)
Q Consensus 185 l~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~ 226 (421)
+.++.....+. ++-...--.||.+...+.++.....+++.
T Consensus 404 i~Iiag~i~d~--~g~y~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 404 IPIIAGFIADG--DGSYDNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred HhhhhheeecC--CCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 23332222222 22233345666655555555554444443
No 206
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=62.23 E-value=33 Score=35.30 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCCh
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQL 391 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~ 391 (421)
+.+...++..+.|++=+.+-..+|-|..+..++
T Consensus 311 ~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~ 343 (412)
T PF01306_consen 311 NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK 343 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 345677788888888888877777776554443
No 207
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=61.13 E-value=12 Score=38.56 Aligned_cols=56 Identities=14% Similarity=-0.113 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
+..++.-++.|+.+|........+..+..+++||..+..+......+|..+|..++
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 34455666778877766665555666667777888777666666666666665554
No 208
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=59.97 E-value=57 Score=33.93 Aligned_cols=83 Identities=16% Similarity=-0.042 Sum_probs=49.4
Q ss_pred CchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCc-CChhhHHHHhHHHHHHHHH
Q 014641 329 NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKV-VQLQHAETAGIVIVLFLVL 407 (421)
Q Consensus 329 ~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~-v~~~~re~ag~~~~~~l~~ 407 (421)
++|+.+.... +++..-.+.|-.. ++.+..++.-++.|+.+|......+...++. .++++|..+..+......+
T Consensus 69 Grk~~l~~~~--~~~~~~~~~~~~a----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 69 GFKRLLMLGG--TLFGLASLAAAFS----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred ccHHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555543333 3444333344432 2324455555778888876665554444444 3567888888888888888
Q ss_pred HHHHHHHHHH
Q 014641 408 GLAAGSIVAW 417 (421)
Q Consensus 408 Gl~~Gs~~s~ 417 (421)
|..+|..++-
T Consensus 143 g~~~gp~lgg 152 (495)
T PRK14995 143 GAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 209
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=59.57 E-value=2.6 Score=42.98 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 302 WYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 302 w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
+..-.....+.+|-.+|-.+..+.. +..+|+.+..+. ++.+.--+++...|.. .+.+...+.-++.|+..|-..+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~--~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA--LLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccc--cccccccccccccccc-ccccccccccccccccccccccc
Confidence 3445667788899999988876433 345555433332 1111111111111211 23345566677889999999999
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
..++..|..+++.|.....+...+..+|..+|..++..
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 160 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI 160 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 99999998899999999999999999999988877654
No 210
>PRK03893 putative sialic acid transporter; Provisional
Probab=59.05 E-value=52 Score=33.80 Aligned_cols=105 Identities=12% Similarity=0.024 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
.....+.++-.+|.....+.. +..+|+.+..+. ++.....+.+... ++.+..++..++.|+..|-.......+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~ 132 (496)
T PRK03893 59 SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI--VLFSVGTLACGFA----PGYWTLFIARLVIGMGMAGEYGSSATY 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665543322 234454433222 2222111111111 122345666677788777655555555
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
..+..++++|..+..+......+|..+|..++
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888887777777777777776554
No 211
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=59.03 E-value=1.7e+02 Score=28.44 Aligned_cols=19 Identities=0% Similarity=0.097 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhcCCCCcc
Q 014641 82 VGLFCLVIIVFYAHKSDAW 100 (421)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~ 100 (421)
.......+..++.+|.+.+
T Consensus 247 ~~~~~~~~~g~l~~r~g~~ 265 (375)
T TIGR00899 247 LEIPFMLLAGYLIKRFGKR 265 (375)
T ss_pred HHHHHHHhHHHHHHHhcch
Confidence 3333444444556665544
No 212
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=58.79 E-value=2.4e+02 Score=29.62 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEe-hhHHHHHHHHHHHHHHhhheeecc-c-------CCcchh-hhHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRI-NVGLGLFVVALLVVPVMDAVYIKG-R-------VGLYDG-FTVTVGAVA 143 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~~~~~~v~l~~~~~~~~~~~~~-~-------~~~~~~-f~i~l~~~~ 143 (421)
.-...+.+.+.+..++..++.|++.-+.|. ..+.++..++++.+.++...-.+. . ...... -+..+++..
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 334566666677777778888887765666 677777777777665543210000 0 000011 144667778
Q ss_pred HhhhhhhhhhchhhhhcCCCCH
Q 014641 144 LSGLADALVQGGLIGAAGELPD 165 (421)
Q Consensus 144 ~~g~~~~~~qss~~~la~~fp~ 165 (421)
..|++-+...+.=|++.+..-+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHcc
Confidence 8999999999988888887554
No 213
>TIGR00901 2A0125 AmpG-related permease.
Probab=57.87 E-value=44 Score=32.65 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=37.6
Q ss_pred HHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 365 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 365 il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
.+.++.++..+........+.++..++|+|..+..+......+|..+|..++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 141 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALV 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333334456787888999999999999999999998887743
No 214
>PRK15075 citrate-proton symporter; Provisional
Probab=57.05 E-value=1.1e+02 Score=30.95 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=35.7
Q ss_pred HHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 364 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 364 ~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
++.-++.|+..|........+..+..++++|..+..+.......|..+|..++
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778877766555556777878888898888777666656655554443
No 215
>PRK11043 putative transporter; Provisional
Probab=56.83 E-value=71 Score=31.77 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHhhhhhcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccC
Q 014641 275 ILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHG 353 (421)
Q Consensus 275 ~fl~f~vTl~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~ 353 (421)
.++.++.+-...|.+ ....+....++...-....++.++-.+|.....+.. +.++|+.+.... ++.....+.+...
T Consensus 15 ~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~ 91 (401)
T PRK11043 15 SMLGFLATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL--SLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH--HHHHHHHHHHHHh
Confidence 344555555556654 211111112222233455566676666666654322 234455433222 1221111112111
Q ss_pred CcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 014641 354 PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 414 (421)
Q Consensus 354 p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~ 414 (421)
++.+..++..++.|+..|...........+..+++++..+-.........|..+|..
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (401)
T PRK11043 92 ----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPL 148 (401)
T ss_pred ----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334555566677655444333333344455555444433333333444444433
No 216
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=55.75 E-value=80 Score=33.40 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHHhhhhhhHHHHHhch----HHHhhcccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 40 IYFTLGLGFLLPWNAFITA----VDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 40 ~f~llG~~~LlpwN~~ita----~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
.|.++..+.++..-.+... .+|-+++.-+++-.........+.+....++.-.+..+...+.+....+.+.+..+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 5555555555554444443 34434322222222344456677888888888888777776666655555444333
No 217
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=55.16 E-value=56 Score=34.16 Aligned_cols=177 Identities=8% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhhHHHHHhch-HHHhhcc--cCC--CccchhhHHH-HHHHHHHHHHHHHHhcCC-CCcc-eEehhHHHHH
Q 014641 39 IIYFTLGLGFLLPWNAFITA-VDYFSYL--YPE--ASVDRIFAVA-YMLVGLFCLVIIVFYAHK-SDAW-VRINVGLGLF 110 (421)
Q Consensus 39 ~~f~llG~~~LlpwN~~ita-~dyf~~~--~~~--~~~~~~~~~~-~~~~~l~~~~~~~~~~~~-~~~~-~Ri~~~~~~~ 110 (421)
++-.+--.+.++....+++- .-|+++- |+- +-+-+.++.. ..+..++...+.=++.+| ++.+ .|-+...+..
T Consensus 261 wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~ 340 (466)
T KOG2532|consen 261 WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAF 340 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHH
Confidence 56667777788888887774 5666653 332 1122333321 122222222232333222 3322 2222222222
Q ss_pred HHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHHHH-HH
Q 014641 111 VVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRI-LT 189 (421)
Q Consensus 111 ~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~i-i~ 189 (421)
...-+.+ +...+++.+. . .+.+++..+.-..+|+..++++.=.-...|+|.+-++.-....|-++.++.= ++
T Consensus 341 ~~~ai~l--~~l~~~~~~~--~---~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 341 GGPAVFL--LVLAFTSDEH--R---LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHHHHHH--HeeeecCCCc--c---hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 2222111 1224454222 1 1222222222334445555544444333678877766555544444443332 33
Q ss_pred HHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 014641 190 KAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVA 225 (421)
Q Consensus 190 ~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l 225 (421)
....+++ .+.+=...|.+.+++.+++-+.|.++
T Consensus 414 g~~~~~~---t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 414 GIIVTDN---TREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeEeCCC---CHHHHHHHHHHHHHHHHHhchheeEe
Confidence 3334322 23334455667777777776666655
No 218
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=53.05 E-value=2.8e+02 Score=28.68 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=21.8
Q ss_pred HHHHhhhhhhhhhchhhhhcC-CCCHHHHHH----HHccccchhhHH
Q 014641 141 AVALSGLADALVQGGLIGAAG-ELPDRYMQA----LVAGTAGSGVLV 182 (421)
Q Consensus 141 ~~~~~g~~~~~~qss~~~la~-~fp~~~~~a----~~~G~g~aGv~~ 182 (421)
...++.+.++...-++=|.|= ++.++-.+. -..||-.+-.++
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 445667777777666666554 344444333 334444444333
No 219
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=51.82 E-value=1.4e+02 Score=28.47 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.+..+-++...+. +..-.+..+.+.+.-...|.+...+....+-+. +.+ .. ....++...+...+.|.+++..+
T Consensus 41 ~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~---~~~-~i-~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 41 TLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA---VSG-RI-PSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred HHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HhC-cc-CccchHHHHHHHHHHcccHHHhh
Confidence 4444444444332 333344566676666667777776666544332 222 11 11344555555566666666554
Q ss_pred -chhhhhcCCCCHHHHHHHHccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccch
Q 014641 154 -GGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLP 229 (421)
Q Consensus 154 -ss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p 229 (421)
+++..-...||.+-=.++-.=.|.-|+-++++.-+..+.+++|. +.+++ .++....++|++.-..++..|
T Consensus 115 ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-----~~fll-~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 115 TASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-----SSFLL-FLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred hHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-----HHHHH-HHHHHHHHHHHHHhhheeccC
Confidence 44555666788643333333345667777888888888876642 23443 334444455555544455444
No 220
>PTZ00207 hypothetical protein; Provisional
Probab=51.32 E-value=2e+02 Score=31.04 Aligned_cols=44 Identities=7% Similarity=0.023 Sum_probs=20.6
Q ss_pred HHHHhhhhhhhhhchhhhhcC-CCCHHHHHHHHccccchhhHHHHH
Q 014641 141 AVALSGLADALVQGGLIGAAG-ELPDRYMQALVAGTAGSGVLVSVL 185 (421)
Q Consensus 141 ~~~~~g~~~~~~qss~~~la~-~fp~~~~~a~~~G~g~aGv~~sll 185 (421)
..++.|++.|..-+.....++ +|+ |+.+..--=..+++.++|++
T Consensus 458 ~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~ 502 (591)
T PTZ00207 458 PYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIF 502 (591)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHH
Confidence 444556666655555444444 355 33333222233445555544
No 221
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=50.44 E-value=1.8e+02 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCCcceEehhHHHHH
Q 014641 82 VGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (421)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 110 (421)
..++..+..-++.+|++.+.-+..+..+.
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444455556667766554444444333
No 222
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=47.72 E-value=23 Score=35.68 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=36.8
Q ss_pred HHHHhhhhhhhhhchh-hhhcCCCCHHHHHHHHccccchhhHHHHHHHHHH
Q 014641 141 AVALSGLADALVQGGL-IGAAGELPDRYMQALVAGTAGSGVLVSVLRILTK 190 (421)
Q Consensus 141 ~~~~~g~~~~~~qss~-~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~ 190 (421)
...+.|++ ++.|.++ |+..-.+ +-.-+.+.|.+++|.++.+...-..
T Consensus 251 sA~isgl~-GITEpAIPFgv~~p~--r~i~a~~iGsaVgGal~~~~gv~~~ 298 (359)
T PRK10478 251 AALVMGCV-GVTEGAIPFAAADPL--RVIPSIMVGSVCGAVTAALFGAQCY 298 (359)
T ss_pred HHHHHHHH-hcCccchHHHHhcch--HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34455555 8999999 9998877 6788899999999999888775443
No 223
>PRK10133 L-fucose transporter; Provisional
Probab=46.10 E-value=3.4e+02 Score=27.67 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhh
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~q 153 (421)
.....+.+...+.....-++.+|+..+..+..+..+..+.+.+.. ..+ +. ..+....+.|++.+...
T Consensus 299 ~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-----~~~---~~-----~~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-----FAG---GH-----VGLIALTLCSAFMSIQY 365 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-----HcC---Ch-----HHHHHHHHHHHHHHHHH
Confidence 334556666666667667777776655444444444333332211 111 11 12345667899999999
Q ss_pred chhhhhcCC-CCH
Q 014641 154 GGLIGAAGE-LPD 165 (421)
Q Consensus 154 ss~~~la~~-fp~ 165 (421)
...++.+.. +|+
T Consensus 366 P~~~s~a~~~~~~ 378 (438)
T PRK10133 366 PTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHcccch
Confidence 999998887 444
No 224
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=45.26 E-value=73 Score=33.64 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred cchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 359 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 359 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+.+.+.++-+++|+..|-.. ...-+..+.++++||..+..+...+..+|-++|+.++=+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888889999997766 555566778899999999999999999999998887643
No 225
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=44.34 E-value=80 Score=33.09 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeee
Q 014641 306 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 384 (421)
Q Consensus 306 i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 384 (421)
++..++++|-.+|.......- +..+|..++.+. +.++.-.+++...+ +.+..++-=++.|+.-|......-+|
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~--~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV--VLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcchhh
Confidence 556788888888888765432 235555544433 33332222333222 33455666667888889888888889
Q ss_pred ccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 385 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 385 ~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
..+..+++.|..-..+...+.+.|+.+|-+.+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999999999999999999866554
No 226
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=43.05 E-value=1.1e+02 Score=24.13 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014641 262 WHIVGRVKWYGFGILLIYI 280 (421)
Q Consensus 262 ~~v~k~i~~~~l~~fl~f~ 280 (421)
.++.+..++..+...+...
T Consensus 66 ~~~~~~~~~~ll~~~ll~l 84 (92)
T PF13038_consen 66 YRVSRWTYPLLLIGLLLIL 84 (92)
T ss_pred hHhHHHHHHHHHHHHHHHH
Confidence 3455555665555544333
No 227
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=42.32 E-value=2.5e+02 Score=25.10 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=34.1
Q ss_pred ccCCCCCCCccchhhHHHH-HHhhhhhhHHHHHhchHHHhhcccCCCccchhhHHHHHHHHH
Q 014641 24 TVHQKPPPDTFHLAYIIYF-TLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGL 84 (421)
Q Consensus 24 ~~~~~~p~d~~~l~y~~f~-llG~~~LlpwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l 84 (421)
+.+|+.|+|.++.++..+. .++....+-||.+....-.+.. ++.-+..+++.|.+...
T Consensus 21 di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~---~~~~~~~lai~y~~~~~ 79 (177)
T PF04144_consen 21 DISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAG---GSGSDFGLAILYLLLGT 79 (177)
T ss_pred CHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceehHHHHHHHHHh
Confidence 3345567777777665554 7777888889998665544443 11223345555544433
No 228
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=38.95 E-value=4e+02 Score=26.46 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcce
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWV 101 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~ 101 (421)
...+...+.....-.+.+|.+.+.
T Consensus 265 ~~~~~~~ig~~~~g~l~dr~~~~~ 288 (402)
T TIGR00897 265 TFFFTNIVFNVIFGIVGDKLGWMN 288 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchh
Confidence 444556666666666677765443
No 229
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=38.33 E-value=63 Score=33.98 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=36.3
Q ss_pred HHHhhhhhhhhhchh-hhhcCCCCHHHHHHHHccccchhhHHHHHHHHHHH
Q 014641 142 VALSGLADALVQGGL-IGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKA 191 (421)
Q Consensus 142 ~~~~g~~~~~~qss~-~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~~ 191 (421)
..+.|++ ++.|.++ ||..-.+ .+..+.++|.+++|.++.+..+-..+
T Consensus 378 a~i~gl~-GITEpAIPfgv~~p~--~~i~a~~iG~avgGa~~~~~gv~~~a 425 (482)
T PRK11404 378 AIVVGAT-VATEPAIPYALAAPL--PMITANTLAGGITGVLVIAFGIKRLA 425 (482)
T ss_pred HHHHHHH-hcCcchhHHHHcCch--HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3445544 8999999 8888766 78888899999999998887765443
No 230
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=37.69 E-value=9.8 Score=32.10 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCCCCCcccccccCCCcccCCCCCCCccchhhHHHHHHhhhhhhHHHHHhch-HHHhhc
Q 014641 7 PEPGSESESSLLLGNSITVHQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITA-VDYFSY 64 (421)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~d~~~l~y~~f~llG~~~LlpwN~~ita-~dyf~~ 64 (421)
.|+++|-|+++.-.++|-+.++...|+|.-.++.|+-.|+-...-=+.+..+ .|-|+.
T Consensus 13 ke~~~~~e~KIrq~~rd~~y~~R~~~~Y~~LfiVFl~AG~vLw~vM~~iFd~CIDsWkA 71 (141)
T PRK13743 13 KEKKNDAELKIRQTKRDYDYERRVSDIYFDLFIVFLTAGIVLWVIMHSIFDACIDSWKA 71 (141)
T ss_pred hccCCChhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4899999999999999998888888999889999999998666665666655 466664
No 231
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.63 E-value=1.1 Score=45.72 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHH
Q 014641 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVV 117 (421)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~ 117 (421)
......++..+....+.+|+..|.-...+..+..++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~ 333 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL 333 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 3334444444555566777776655666666666555443
No 232
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=37.50 E-value=1.2e+02 Score=30.19 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=40.9
Q ss_pred hhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 361 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 361 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+..++.-++.|+..|.. ........+..+++||..+..+......+|..+|..++..
T Consensus 80 ~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 80 EWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred HHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888743 2333333566778899999999999998998888776554
No 233
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=37.39 E-value=4.3e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
.....+.+..++......++.+|.+.+..+..++.+..+..
T Consensus 244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 244 SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 34456667777778887888888776655555555444443
No 234
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.24 E-value=2.7e+02 Score=26.28 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=9.8
Q ss_pred HHHHHccccchhhHHHHHHHH
Q 014641 168 MQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 168 ~~a~~~G~g~aGv~~sll~ii 188 (421)
..-+..|.-+||+++.+....
T Consensus 12 ~~~illg~~iGg~~G~~~~~~ 32 (248)
T PF11368_consen 12 LLLILLGGLIGGFIGFFIGRI 32 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555544433
No 235
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=36.16 E-value=46 Score=36.20 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 363 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 363 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++..++.|+..|-..++...+..+.+++++|..+..+......+|..+|-.++
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llg 228 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLG 228 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 345677889988888888888888888889999988888888887777775554
No 236
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=31.23 E-value=4.9e+02 Score=25.12 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEe-hhHHHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRI-NVGLGLFVVAL 114 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~~~~~~v~l 114 (421)
.+...+.+..++..+..-++.+|.+.+.|. ..+.++..++.
T Consensus 236 ~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 236 SLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 444556667777777777777777544443 33334444333
No 237
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=30.83 E-value=96 Score=32.19 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l 114 (421)
.+.....+..++...+...+.+|.+.+.=+..+.++..+..
T Consensus 292 ~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~ 332 (468)
T TIGR00788 292 MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSS 332 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 33344556666666666666677776554455555544433
No 238
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=30.54 E-value=64 Score=33.64 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhhh
Q 014641 211 GIVVMVICIVFYNVAHRLPVIKYHEDLKIQ 240 (421)
Q Consensus 211 ~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~ 240 (421)
.++..+++.+.|+ |+.|-|.|...+
T Consensus 412 q~v~lvi~~lIY~-----PFvK~~dk~~~~ 436 (452)
T PRK10297 412 ALFNLGIATLIYL-----PFVVVANKAQNA 436 (452)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3344445555554 888877665443
No 239
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=29.32 E-value=6.4e+02 Score=25.87 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhh-h
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADA-L 151 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~-~ 151 (421)
.++.++||+..++..--..++ +.| |+..--+++.+-+++..+ ...| + -....++.+++++.-|+..| .
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~----rir-~lwils~LQ~~nl~~~~l-~s~~-~----fipsi~ivf~lif~eGLlGGa~ 352 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF----RIR-RLWILSLLQVINLVFLLL-QSWY-R----FIPSIWIVFVLIFYEGLLGGAS 352 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee----ehh-hHHHHHHHHHHHHHHHHH-HHHH-H----HhhHHHHHHHHHHHHHHhhhHH
Confidence 466788888776664432221 121 232333333333332221 1111 1 01234556666777775543 4
Q ss_pred hhchhhhhcCCCCHHH----HHHHHccccchhhHHHHHHHHH
Q 014641 152 VQGGLIGAAGELPDRY----MQALVAGTAGSGVLVSVLRILT 189 (421)
Q Consensus 152 ~qss~~~la~~fp~~~----~~a~~~G~g~aGv~~sll~ii~ 189 (421)
.=++++.+....|++. +++...|.+++=++++++.+..
T Consensus 353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5556666666666543 5666777766666666665543
No 240
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=27.42 E-value=1.6e+02 Score=30.71 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHhhhccccchheee--eccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 369 LLGLTNGYLTSVLMI--LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 369 lfgltnGy~~t~~mi--~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
+.|++.||....+-. +.+...+.++|-.+-.+++-+...|+.+|..++-.
T Consensus 119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 789989888876655 46777788899999889998888888888777654
No 241
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=26.77 E-value=4.8e+02 Score=23.58 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHHHHc
Q 014641 95 HKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQALVA 173 (421)
Q Consensus 95 ~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~~~~a~~~ 173 (421)
++.+.+.|....+.+..+.+.+..++.... + ... ...+...+.+++.|+..+..-.+.+. .+..+++
T Consensus 74 ~~~~~~~~~~~~l~~~~~ll~~~~~~~~~~-~--~~~-----~~~~~~~~lafamg~Qn~~~~~~~g~~~~Tt~~T---- 141 (209)
T PF06912_consen 74 RRRRRRRWYRILLLLEAILLLIAALLPPAF-P--PHG-----HRILAIFLLAFAMGMQNAAFRRLGGVSIRTTFMT---- 141 (209)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhc-c--cch-----HHHHHHHHHHHHHHHHHHHHHHcCCCcccchhhH----
Confidence 344455555566666665555544432211 1 101 12334444555555544444434332 2333333
Q ss_pred cccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 014641 174 GTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYN 223 (421)
Q Consensus 174 G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~ 223 (421)
|-+..+.+-+.....++|+ .++....|+.+-..+..-++....
T Consensus 142 -----G~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~f~~Ga~~ga~ 184 (209)
T PF06912_consen 142 -----GNLTDLGIDLARYLRGKDR--ALRRALRYLLIILSFFIGAILGAL 184 (209)
T ss_pred -----hhHHHHHHHHHHHHhCCch--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433 334455666655555555555544
No 242
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=4e+02 Score=26.03 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHHHHhcccCccchhhhHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHh
Q 014641 173 AGTAGSGVLVSVLRILTKAVYTQDAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHED 236 (421)
Q Consensus 173 ~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~ 236 (421)
-|.|++|.++++-.+=. + ...+.+|++.+..+.+.+..+.+.+.|. .++|+.
T Consensus 221 ~g~~~~G~i~ai~~~~~---------~-i~v~i~m~i~a~~Ft~~av~~i~~i~kV--h~~yRg 272 (313)
T KOG3088|consen 221 PGWGLCGWIPAIDVLSG---------N-IAVGILMLIGAGLFTLEAVLSIWVLQKV--HSYYRG 272 (313)
T ss_pred CCcchhhhhhHhhccCc---------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 57889999987733211 1 2346778888888887777777777663 344443
No 243
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=24.97 E-value=30 Score=21.18 Aligned_cols=6 Identities=50% Similarity=0.878 Sum_probs=3.8
Q ss_pred CCCccc
Q 014641 10 GSESES 15 (421)
Q Consensus 10 ~~~~~~ 15 (421)
||||||
T Consensus 3 GSddEe 8 (28)
T PF10587_consen 3 GSDDEE 8 (28)
T ss_pred CCcccc
Confidence 677753
No 244
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=24.89 E-value=23 Score=37.70 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHH
Q 014641 72 DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLG 108 (421)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~ 108 (421)
...+..+|.+++++..+....++.| .+|.|+++.-.
T Consensus 40 ~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~ 75 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGA 75 (539)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecH
Confidence 4577889999999999988888877 46888764433
No 245
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.67 E-value=6.9e+02 Score=24.73 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhhccc
Q 014641 308 IAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCL 351 (421)
Q Consensus 308 ~~~fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~ 351 (421)
..++.+|-.++|.-.. ...+.+......+.|++..|++....
T Consensus 285 l~l~~lG~~l~~~~~~--~~~~~~~~~~~~~~rlii~P~i~~~~ 326 (385)
T PF03547_consen 285 LALFVLGASLARGPRK--SALGWKPSIIAVLVRLIILPLIGIGI 326 (385)
T ss_pred HHHHHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666654211 11123333456889999999886543
No 246
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=23.56 E-value=8.8e+02 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-CcceEehhHHHHHHHHHH
Q 014641 76 AVAYMLVGLFCLVIIVFYAHKS-DAWVRINVGLGLFVVALL 115 (421)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~-~~~~Ri~~~~~~~~v~l~ 115 (421)
...|.....+..+..-.+.+|+ ..|.-+..+.++..+..+
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l 91 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV 91 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 3344445455555555666776 544445566666555443
No 247
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.48 E-value=1.9e+02 Score=23.48 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=27.7
Q ss_pred HHHhhhhhhHHHHHhch------HHHhhcccCCCccchhhHHHHHHHHHHHHHHHHH
Q 014641 42 FTLGLGFLLPWNAFITA------VDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVF 92 (421)
Q Consensus 42 ~llG~~~LlpwN~~ita------~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (421)
.-+|+.+.+.|...+.. .-+.+.+|+. + ..+++...+..++..+.+.+
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t-~--~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPS-P--FSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--cHHHHHHHHHHHHHHHHHHH
Confidence 33444455556654442 3444556664 2 36777777777777777764
No 248
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=22.20 E-value=9.5e+02 Score=25.43 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCCcchhhhHHHHHHHHhhhhhhhh
Q 014641 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (421)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~f~i~l~~~~~~g~~~~~~ 152 (421)
..+..++.+..++..++...+.++.+.+.-+..+.++..++++.+.+ . ...++.++..++.|++....
T Consensus 257 Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-----~-------~~~~~~~~~l~l~G~~~~~~ 324 (524)
T PF05977_consen 257 GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-----S-------PSFWLALIALFLAGAAWIIA 324 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc-----c-------hHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888888888877655455555555444433222 1 13344555666777776666
Q ss_pred hchhhhhcC-CCCHHH
Q 014641 153 QGGLIGAAG-ELPDRY 167 (421)
Q Consensus 153 qss~~~la~-~fp~~~ 167 (421)
.++.....- .-|+++
T Consensus 325 ~~~~~t~~Q~~~P~~~ 340 (524)
T PF05977_consen 325 NSSLNTLVQLSVPDWV 340 (524)
T ss_pred HHHHHHHHHHhCCHHH
Confidence 555444333 345544
No 249
>COG4769 Predicted membrane protein [Function unknown]
Probab=21.45 E-value=2.9e+02 Score=24.73 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHhhhhhhhhhchhhhhcCCCCHHHHHHHHccccchhhHHHHHHHHHHH
Q 014641 142 VALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGSGVLVSVLRILTKA 191 (421)
Q Consensus 142 ~~~~g~~~~~~qss~~~la~~fp~~~~~a~~~G~g~aGv~~sll~ii~~~ 191 (421)
+++.+++.|+..+-.|-+...|||||.+.+.+ ..++|..-++.|++...
T Consensus 79 ~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgi-S~mGaF~hNl~QLivas 127 (181)
T COG4769 79 VFLYSFAGAILSTLFMYFLYQFGPKYLSLLGI-SVMGAFTHNLGQLIVAS 127 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEeeeeh-hhHHHHHHhHHHHHHHH
Confidence 45667888888888888899999998753222 23566677788887443
No 250
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.39 E-value=2.1e+02 Score=31.09 Aligned_cols=70 Identities=9% Similarity=-0.020 Sum_probs=48.9
Q ss_pred hhhcCCCCH--HHHHHHHccccchhhHHHHHHHHHHHhccc-CccchhhhHHHHHHHHHHHHHHHHHHHHHhccch
Q 014641 157 IGAAGELPD--RYMQALVAGTAGSGVLVSVLRILTKAVYTQ-DAIGLRKSANLYFAVGIVVMVICIVFYNVAHRLP 229 (421)
Q Consensus 157 ~~la~~fp~--~~~~a~~~G~g~aGv~~sll~ii~~~~~~~-~~~~~~~~~~~yF~i~~~~~~~~~~~~~~l~r~p 229 (421)
+.....|.. .-...++.+.|..|-+....|++.++...+ ...++--.++.||++....+++. |...+|.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf~~Qw~~se~~~~s~~p~~FW~~s~~G~~~~l~---Y~i~r~dp 195 (608)
T PRK01021 123 MASPNIFHLPLPPANLSWHLIGCIGLTIFSLRFFIQWFYLEYNNQSALPALFWKASLLGGSLALL---YFIRTGDP 195 (608)
T ss_pred hhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHH---HHHHhCCc
Confidence 555555554 556678899999999999999999996533 23455567899999887766544 44445555
No 251
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=21.12 E-value=43 Score=20.72 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=8.2
Q ss_pred CCCcccccccCC
Q 014641 10 GSESESSLLLGN 21 (421)
Q Consensus 10 ~~~~~~~~~~~~ 21 (421)
+||+||+-+..|
T Consensus 14 ySDeeeE~~~~~ 25 (30)
T PF03522_consen 14 YSDEEEETETEP 25 (30)
T ss_pred ccCcccccccch
Confidence 678777766654
No 252
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.47 E-value=1.1e+03 Score=26.33 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHHHHHHHhccc
Q 014641 216 VICIVFYNVAHRL 228 (421)
Q Consensus 216 ~~~~~~~~~l~r~ 228 (421)
+++.++|..+++.
T Consensus 270 ~ia~~lFll~P~~ 282 (764)
T TIGR02865 270 LIATLLFLLIPNK 282 (764)
T ss_pred HHHHHHHHHhhHH
Confidence 4555566666653
No 253
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=20.40 E-value=9.7e+02 Score=24.82 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHH
Q 014641 341 LLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETA 397 (421)
Q Consensus 341 ~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~a 397 (421)
...+|.+++....+ .......-+.+.+++.--..|..+....+..+++||..+
T Consensus 337 ~~~vP~~llls~~~----~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~ 389 (451)
T KOG2615|consen 337 LLIVPAFLLLSLAR----TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTL 389 (451)
T ss_pred HHHHHHHHHHhccc----cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHH
Confidence 56778876533211 112334555667777777777777766666677777654
Done!