Query 014641
Match_columns 421
No_of_seqs 116 out of 811
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.9 3.8E-08 1.3E-12 98.4 17.4 344 49-416 41-403 (451)
2 3o7q_A L-fucose-proton symport 98.5 1.1E-05 3.7E-10 80.2 20.1 128 52-188 42-175 (438)
3 4aps_A DI-OR tripeptide H+ sym 97.9 0.00013 4.6E-09 73.6 14.2 57 360-416 386-442 (491)
4 2gfp_A EMRD, multidrug resista 97.8 9.4E-05 3.2E-09 72.0 11.2 319 50-414 14-344 (375)
5 2xut_A Proton/peptide symporte 97.2 0.0031 1E-07 64.1 12.8 57 360-416 405-461 (524)
6 4gc0_A D-xylose-proton symport 97.1 0.0078 2.7E-07 60.4 15.2 152 37-188 10-184 (491)
7 1pw4_A Glycerol-3-phosphate tr 94.4 0.12 4.2E-06 50.6 9.0 109 305-416 65-175 (451)
8 3o7q_A L-fucose-proton symport 93.0 0.15 5.2E-06 49.8 6.8 115 301-418 60-175 (438)
9 2cfq_A Lactose permease; trans 92.2 0.46 1.6E-05 46.6 9.1 33 81-113 270-302 (417)
10 2cfq_A Lactose permease; trans 91.9 0.59 2E-05 45.8 9.6 37 74-110 47-83 (417)
11 2xut_A Proton/peptide symporte 87.7 0.62 2.1E-05 46.8 5.8 106 305-416 57-168 (524)
12 4aps_A DI-OR tripeptide H+ sym 86.3 1.2 4.1E-05 44.1 7.0 108 303-416 55-166 (491)
13 4gc0_A D-xylose-proton symport 84.5 6.1 0.00021 38.8 11.2 44 75-118 317-360 (491)
14 2gfp_A EMRD, multidrug resista 81.4 1.6 5.5E-05 41.5 5.3 108 303-417 36-145 (375)
15 1q1s_A Large T antigen; import 56.4 4.9 0.00017 23.1 1.4 22 9-35 1-22 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.89 E-value=3.8e-08 Score=98.42 Aligned_cols=344 Identities=12% Similarity=0.074 Sum_probs=168.7
Q ss_pred hhHHHHHhchHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 49 LLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 49 LlpwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
.+.++.+....+++.+++-+......+...+.+...+.....-.+.+|+..|.-+..+.++..++.+........ .+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~-- 117 (451)
T 1pw4_A 41 YLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TS-- 117 (451)
T ss_dssp HHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HS--
T ss_pred HHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-cc--
Confidence 333444444455555555222233455566777777777777777788776665556666665555443321100 11
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH----HHHHHHccccchhhHHHHHHHHHHHhcccCccchhhh
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR----YMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKS 203 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~----~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~ 203 (421)
.++..++.-++.|++.+.......++.+. +|++ ..+....+.+++++++..+.-......+ +-+.
T Consensus 118 -----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----~w~~- 187 (451)
T 1pw4_A 118 -----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHA- 187 (451)
T ss_dssp -----SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC----CSTT-
T ss_pred -----cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHHH-
Confidence 23334556777888888888777777664 5643 3455566666666666555432211111 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhhhhhhhhhhhcc--CCCCcccchh--HHHHH--HHHHHHHHHHHH
Q 014641 204 ANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKG--SLTGSMWRSA--VWHIV--GRVKWYGFGILL 277 (421)
Q Consensus 204 ~~~yF~i~~~~~~~~~~~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~--~~~v~--k~i~~~~l~~fl 277 (421)
.|...+.+..+..+..++.+++.|..+...+. ++.+++.+++. +.+.+....+ .++.+ |..|...+..++
T Consensus 188 --~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 188 --ALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp --CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--TTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--hhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 22222222233333344445544432110000 00000000000 0000011111 23333 345555555554
Q ss_pred HHhhhh---hcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-cc--CchhHHH-HHHHHHHHHhhhhcc
Q 014641 278 IYIVTL---SIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LE--NEKVAIG-GCFARLLFFPLFLGC 350 (421)
Q Consensus 278 ~f~vTl---~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~-~~--~~~~l~~-ls~~R~~fiplf~~~ 350 (421)
..+... ..+|.+.. +....+....-.....+.++..+|+.+..+.. +. ++|+.+. ..+.-. .+-++++.
T Consensus 264 ~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 339 (451)
T 1pw4_A 264 VYLLRYGILDWSPTYLK---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHBT---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHH
Confidence 444322 22343321 11122333344567788899999998876543 22 4444322 222111 11112221
Q ss_pred ccCCcccccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHH-HHHHHHHHH
Q 014641 351 LHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL-GLAAGSIVA 416 (421)
Q Consensus 351 ~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~-Gl~~Gs~~s 416 (421)
.. +. .+.+..++..+++|+..|........+..+..++++|..+..+......+ |..+|..+.
T Consensus 340 ~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 340 MN-PA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp SC-CT--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-cc--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 13344566777788877777666666777777888898888888888777 877776553
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.46 E-value=1.1e-05 Score=80.20 Aligned_cols=128 Identities=9% Similarity=-0.001 Sum_probs=78.2
Q ss_pred HHHHhchHHHhhcccCCCcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeecccCC
Q 014641 52 WNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG 130 (421)
Q Consensus 52 wN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~~~ 130 (421)
++.+-...+++.+.+.-++. ...+...+.+...+.....-.+.+|+..|.-+..+.++..+..+....... .
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~----- 114 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--I----- 114 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--T-----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--c-----
Confidence 34444445666766643322 244455666666666666667778887776667777776665554422111 1
Q ss_pred cchhhhHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH----HHHHHccccchhhHHHHHHHH
Q 014641 131 LYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSGVLVSVLRIL 188 (421)
Q Consensus 131 ~~~~f~i~l~~~~~~g~~~~~~qss~~~la~-~fp~~~----~~a~~~G~g~aGv~~sll~ii 188 (421)
..++..++.-++.|++.+..+....++.+ .+|++. ++....+.+++++++..+.-.
T Consensus 115 --~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 115 --MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred --ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444566778889999988887777776 456443 566667777777776665443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.89 E-value=0.00013 Score=73.59 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=45.6
Q ss_pred chhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 360 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 360 d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++.++..+++|+..|......+.+..+..++++|..+..+......+|..+|+.+.
T Consensus 386 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 386 PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778889988888877777887878888898888888888888888887664
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.81 E-value=9.4e-05 Score=71.95 Aligned_cols=319 Identities=12% Similarity=0.001 Sum_probs=155.4
Q ss_pred hHHHHHhchHHHhhcccCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHHHhhheeeccc
Q 014641 50 LPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (421)
Q Consensus 50 lpwN~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~~~~~~~~~~~ 128 (421)
+.++.+....+.+.+++.-++ ........+.+...+.....-.+.+|+..|.-+..+..+..+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 345555555555555554322 23455566677777777777777888887777777777776666544331
Q ss_pred CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCH----HHHHHHHccccchhhHHHHHHHHHHHhcccCccchhhh
Q 014641 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPD----RYMQALVAGTAGSGVLVSVLRILTKAVYTQDAIGLRKS 203 (421)
Q Consensus 129 ~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~----~~~~a~~~G~g~aGv~~sll~ii~~~~~~~~~~~~~~~ 203 (421)
..+...++..++.|++.+..+....++.+. +|+ +..+....+.+++++++..+.-..... .+.
T Consensus 86 ----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~--- 153 (375)
T 2gfp_A 86 ----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNW--- 153 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHH---
T ss_pred ----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccH---
Confidence 133445556677788888777776666553 232 345666666666666665543321100 011
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhccchhhHHHHhhhhhhhhhhhhhccCCCCcccchhHHHHH--HHHHHHHHHHHHHHh
Q 014641 204 ANLYFAVGIVVMVICIV-FYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIV--GRVKWYGFGILLIYI 280 (421)
Q Consensus 204 ~~~yF~i~~~~~~~~~~-~~~~l~r~p~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~--k~i~~~~l~~fl~f~ 280 (421)
... |.+..++.+++.+ .+..+++.|. + + ++++ +.+++.++++ |+.|...+..++.++
T Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~---~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 154 RAC-YLFLLVLCAGVTFSMARWMPETRP---------V---D-APRT------RLLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHH-HHHHHHHHHHHHCCCCCSSCCCST---------T---T-CCCC------CTTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHCcccCC---------C---C-cccc------cHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 112 2222222222222 2222222110 0 0 0000 0112222333 345555555444444
Q ss_pred hhh---hcccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhhccccCCccc
Q 014641 281 VTL---SIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFF 357 (421)
Q Consensus 281 vTl---~vFP~i~~~~~~~~~~~~w~~~i~~~~fn~gD~iGR~~~~~~~~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~ 357 (421)
... ...|-+..+ ....++...-.....+.++..+|+.+..+...+..++....... ....-+.+..... ..-
T Consensus 214 ~~~~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 288 (375)
T 2gfp_A 214 GIAAFEACSGVLMGA---VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVIC-CLLAGLLMWIPDW-FGV 288 (375)
T ss_dssp HHHHHHHHCSCSSHH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHH-HHHTSSSSSHHHH-HHH
T ss_pred HHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-hcc
Confidence 322 223443211 01111222335566778889999887655432111111111110 0111111000000 000
Q ss_pred ccchhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 014641 358 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 414 (421)
Q Consensus 358 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~ 414 (421)
++.+..++..+++|+..|........+..+..+ ++|..+..+......+|..+|+.
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~ 344 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLAS 344 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCST
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHH
Confidence 133345566778888888877777777666654 67777777777777766665543
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.16 E-value=0.0031 Score=64.13 Aligned_cols=57 Identities=12% Similarity=-0.070 Sum_probs=43.4
Q ss_pred chhHHHHHHHHhhhccccchheeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 360 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 360 d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.++.++..+++|+..|........+..+..++++|..+..+......+|-.+|..+.
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889988888887777777777888888887777777777777776654
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.12 E-value=0.0078 Score=60.38 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=75.1
Q ss_pred hhHHHHHHhhh-hhhHHHH-Hhc-hHHHhhcccCCC-----c----cchhhHHHHHHHHHHHHHHHHHhcCCCCcceEeh
Q 014641 37 AYIIYFTLGLG-FLLPWNA-FIT-AVDYFSYLYPEA-----S----VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRIN 104 (421)
Q Consensus 37 ~y~~f~llG~~-~LlpwN~-~it-a~dyf~~~~~~~-----~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~ 104 (421)
+|.+-++..+| .+..|+. +++ +.+++++.|... + ....+...+.+...+..++.-.+.+|+..|.=+.
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44444444444 4456765 333 456655544211 1 1224445566667777777667777776555555
Q ss_pred hHHHHHHHHHHHHHHhhheeec--cc----CCcchhhhHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHH----HHHHc
Q 014641 105 VGLGLFVVALLVVPVMDAVYIK--GR----VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM----QALVA 173 (421)
Q Consensus 105 ~~~~~~~v~l~~~~~~~~~~~~--~~----~~~~~~f~i~l~~~~~~g~~~~~~qss~~~la~~-fp~~~~----~a~~~ 173 (421)
.+.++..++.+........... .. ..-...+...++.=++.|++.|........+.+- .|++.- .....
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 6666655544432210000000 00 0001133444556677888888777777776664 565443 33344
Q ss_pred cccchhhHHHHHHHH
Q 014641 174 GTAGSGVLVSVLRIL 188 (421)
Q Consensus 174 G~g~aGv~~sll~ii 188 (421)
+...+.+++.+....
T Consensus 170 ~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchh
Confidence 444444444444433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=94.36 E-value=0.12 Score=50.61 Aligned_cols=109 Identities=11% Similarity=-0.073 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHH-HHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhee
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 382 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~-ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 382 (421)
-++...+.++..++.....+.. +.++|+.+. ..+...+...+.... +..-++.+..++..++.|+..|.......
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV---PWATSSIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---HHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---hhccccHHHHHHHHHHHHHHhhhccchHH
Confidence 3456677788888777654432 234555432 222222222111110 00012334567778888999998888888
Q ss_pred eeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014641 383 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 383 i~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
.+.++..++++|..+..+......+|..+|..++
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999988887776
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.99 E-value=0.15 Score=49.76 Aligned_cols=115 Identities=7% Similarity=-0.071 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccch
Q 014641 301 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 379 (421)
Q Consensus 301 ~w~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 379 (421)
+...-++...+.++..++.....+.. +.++|+.+.... ++.....+++-. ..+.++.+..++..++.|+..|-...
T Consensus 60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~G~~~~~~~~ 136 (438)
T 3o7q_A 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWP-AAEIMNYTLFLVGLFIIAAGLGCLET 136 (438)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHh-ccccccHHHHHHHHHHHHhhHHHhhh
Confidence 33344667788888888887764432 345555433322 111111111100 00122335567777888999998888
Q ss_pred heeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014641 380 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 418 (421)
Q Consensus 380 ~~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~~ 418 (421)
....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 137 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 137 AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999998889999999999888876543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.17 E-value=0.46 Score=46.61 Aligned_cols=33 Identities=6% Similarity=0.024 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceEehhHHHHHHHH
Q 014641 81 LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA 113 (421)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~ 113 (421)
+...+..+...++.+|+..+..+..+..+..+.
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 344445555566667766554444455444443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.92 E-value=0.59 Score=45.83 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHH
Q 014641 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (421)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~ 110 (421)
.....+.+...+.....-.+.+|+..|..+..+..+.
T Consensus 47 ~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4444556666666666667788888766665555543
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=87.68 E-value=0.62 Score=46.80 Aligned_cols=106 Identities=8% Similarity=-0.126 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-cc-CchhHHHH-HHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchhe
Q 014641 305 IILIAGYNVFDLVGKSLTAIYL-LE-NEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 381 (421)
Q Consensus 305 ~i~~~~fn~gD~iGR~~~~~~~-~~-~~~~l~~l-s~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 381 (421)
-.....+.++..+|.....+.. +. .+|+.+.. .+...+.. +++...+ .+.+..++..++.|+..|......
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH---AFLAIFE---HSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH---HHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---HHHHHhc---ccHHHHHHHHHHHHHhccccchhH
Confidence 3556678888888877755432 33 55554332 22222221 1111111 133455667778899998888877
Q ss_pred eeeccCcCChhhHHHHhHH---HHHHHHHHHHHHHHHH
Q 014641 382 MILAPKVVQLQHAETAGIV---IVLFLVLGLAAGSIVA 416 (421)
Q Consensus 382 mi~~p~~v~~~~re~ag~~---~~~~l~~Gl~~Gs~~s 416 (421)
..+.++..++++|..+... ......+|..+|..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777887788888766555 6666677777766543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=86.34 E-value=1.2 Score=44.15 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-c-cCchhHHHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 303 YGIILIAGYNVFDLVGKSLTAIYL-L-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~~~-~-~~~~~l~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
..-.....+.++-.+|+....+.. + ..+|+.+.... ++.....+.+... ++.+..++..++.|+..|-....
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 55 TAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG--VLIMLGHIVLALP----FGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHHHHHHHSC----CSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHhccch
Confidence 344567788888888887765432 3 35555433322 2222212222211 23355677778889999888887
Q ss_pred eeeeccCcCChhh--HHHHhHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQH--AETAGIVIVLFLVLGLAAGSIVA 416 (421)
Q Consensus 381 ~mi~~p~~v~~~~--re~ag~~~~~~l~~Gl~~Gs~~s 416 (421)
...+..+..++++ |..+-.+......+|..+|..++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 7777777666666 55666666677777777776654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=84.52 E-value=6.1 Score=38.83 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcceEehhHHHHHHHHHHHHH
Q 014641 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVP 118 (421)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~~~~~~v~l~~~~ 118 (421)
.+....+..+...++...+.+|+..|.....+.....++++.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 34445555556666666666676666666666666666555443
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=81.44 E-value=1.6 Score=41.48 Aligned_cols=108 Identities=7% Similarity=0.009 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-ccCchhH-HHHHHHHHHHHhhhhccccCCcccccchhHHHHHHHHhhhccccchh
Q 014641 303 YGIILIAGYNVFDLVGKSLTAIYL-LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSV 380 (421)
Q Consensus 303 ~~~i~~~~fn~gD~iGR~~~~~~~-~~~~~~l-~~ls~~R~~fiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~ 380 (421)
..-.....+.++..+++....+.. +.++|+. .+..+...+...+.... ++.+..++..++.|+..|.....
T Consensus 36 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~ 108 (375)
T 2gfp_A 36 AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVM 108 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhh
Confidence 344667788888888888765433 2344443 33333333222212111 22344566777889988877777
Q ss_pred eeeeccCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014641 381 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 417 (421)
Q Consensus 381 ~mi~~p~~v~~~~re~ag~~~~~~l~~Gl~~Gs~~s~ 417 (421)
...+.++..++++|..+..+.......|..+|..++-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777666778888888888888888888877654
No 15
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=56.45 E-value=4.9 Score=23.06 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=13.6
Q ss_pred CCCCcccccccCCCcccCCCCCCCccc
Q 014641 9 PGSESESSLLLGNSITVHQKPPPDTFH 35 (421)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~d~~~ 35 (421)
+|||+|+.-| ..+..+||.++.
T Consensus 1 ~~sdde~~ad-----s~~sTPPKkKrk 22 (26)
T 1q1s_A 1 PGSDDEAAAD-----AQHAAPPKKKRK 22 (26)
T ss_pred Cccccccccc-----ccccCCCccccc
Confidence 6888877543 344566766554
Done!