BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014642
         (421 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
 pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
          Length = 456

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 18/98 (18%)

Query: 55  LSQKFGSASNI-------CASS--LDSYETVVKKFKEARSNL-DTLKKLGASIIHGVDAT 104
           ++  F  ASNI       C SS  L    +V   +KE R  L DTL  LG  +  GV+A 
Sbjct: 318 VTTSFNGASNIAQAGGLACLSSGGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVNAP 377

Query: 105 EMKEHSELSKR--KFDRI-----IFNFPHAGFH-GKEE 134
            +  H + SK    F+ I     I   P +GF  G EE
Sbjct: 378 YLWVHFKGSKSWDVFNEILENTHIITVPGSGFGPGGEE 415


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,251,666
Number of Sequences: 62578
Number of extensions: 566747
Number of successful extensions: 1044
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 12
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)