BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014642
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana
GN=At4g26485 PE=4 SV=1
Length = 209
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%)
Query: 29 EKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD 88
EKWI HYSS H+ILLVGEG+FSFS L+ FGSA NI A+SLDS + + K+ +A N++
Sbjct: 5 EKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNIN 64
Query: 89 TLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAG--FHGKEEDDEVIRMHMSLV 146
LK+ G I H VD M + LS +++DRI+FNFPHAG F G+E I H LV
Sbjct: 65 ILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELV 124
Query: 147 EGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNK 206
GF NA ML GE+H++HKTT PF W I++L + L L +F YPGY K
Sbjct: 125 RGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITK 184
Query: 207 KGAGS-LCDDYFPLGKCSTFKF 227
+G+G DDYFP+G+CST+ F
Sbjct: 185 RGSGGRRSDDYFPVGECSTYMF 206
>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC1919.13c PE=3 SV=1
Length = 282
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 107/189 (56%), Gaps = 2/189 (1%)
Query: 23 KDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALS-QKFGSASNICASSLDSYETVVKKFK 81
K++ E++++ + ++ LL+GEG+FSF+F+L S + A+S DS E + +K+
Sbjct: 42 KNKGPTERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYP 101
Query: 82 EARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRM 141
+A + ++ G ++H +DAT++ H +L +KFD I +NFPH+G G ++ D I
Sbjct: 102 DAAEYISKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSG-KGIKDQDRNILD 160
Query: 142 HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYP 201
+ ++ FF+ + +L +G + ++ T P+ W+++ LA+ L +F YP
Sbjct: 161 NQKMLLAFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYP 220
Query: 202 GYSNKKGAG 210
YS+++ G
Sbjct: 221 EYSHRRTIG 229
>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1
OS=Homo sapiens GN=FDXACB1 PE=2 SV=3
Length = 624
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH 99
++LLVGEG+FSF+ ALS+ ++ + A+ L + + A NL L++ G +
Sbjct: 5 RLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELARD-PLAWENLQCLRERGIDVRF 63
Query: 100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP 159
GVD T++ + EL +R+FD+I F FPH G + + L+ FF++ + +L
Sbjct: 64 GVDCTQLADVFELHEREFDQIYFIFPHCGRKAG------VAKNRELLAKFFQSCADVLAE 117
Query: 160 RGEVHVS 166
GEVHV+
Sbjct: 118 EGEVHVA 124
>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1
homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2
Length = 622
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH 99
++LLVGEG+FSF+ +L + ++ A+ + ++ A NL L++ G +
Sbjct: 5 RLLLVGEGNFSFAASLIDGLDPSVSVTATGFQ-HRAALEGDPVALENLKRLRERGVEVRF 63
Query: 100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP 159
GVD T++ R FDRI FNFPH G + + L+ FF++ + +L
Sbjct: 64 GVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG------VAKNRELLAKFFQSCADVLAK 117
Query: 160 RGEVHVS-------HKTTAPFCKWH----IEELARKHSLLRLDCVQFRKEDYPGY 203
GEVHV+ P +WH + +A + D F E PGY
Sbjct: 118 AGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY 172
>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YIL096C PE=1 SV=1
Length = 336
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 54/229 (23%)
Query: 32 IMHYSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDS--YETVVKKFKEARSNLD 88
+M + ++L GEGDFSF+ ++ Q + + N+ +S D+ E +K N
Sbjct: 65 VMPFEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQ 124
Query: 89 TLKKLGASIIHGVDATEMKEHSELSK------------------RKFDRIIFNFPHAGFH 130
LK L I +D T++ + ++SK + I+FNFPH G
Sbjct: 125 YLKDLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNG-K 183
Query: 131 GKEEDDEVIRMHMSLVEGFFRNASGMLR-----------------------PR------- 160
G ++ + IR H L+ FF+N+ + P+
Sbjct: 184 GIKDQERNIREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAE 243
Query: 161 --GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKK 207
G + +S P+ W I+ LA+K+ L +F+ E++PGY +++
Sbjct: 244 GYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRR 292
>sp|Q9I9C3|AT233_ANGAN Sodium/potassium-transporting ATPase subunit beta-233 OS=Anguilla
anguilla GN=atnb233 PE=1 SV=1
Length = 302
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 245 IVKRTKAVQEIPIQVQKRETDPFDWR-----------CTNAKSATDMNEFRACVKFDGSG 293
IVK + V P E+ P D + CTN K D + + VK+ G G
Sbjct: 176 IVKLNRIVNFRPKPPNSNESIPEDAKAKVRPNVIPIYCTNKKEE-DAGKLQE-VKYFGIG 233
Query: 294 AGYPVREYPRFDSLVHPQ 311
G+P++ YP + L+HPQ
Sbjct: 234 DGFPLQYYPYYGKLLHPQ 251
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 67 ASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPH 126
+SLD ++ VK KEA +LG +IIH K +FDRI+ + P
Sbjct: 279 VTSLDLHKHKVKLIKEAAD------RLGLTIIHAETMDARKAGETFENEQFDRILVDAPC 332
Query: 127 AGF 129
+GF
Sbjct: 333 SGF 335
>sp|Q8EUR6|SYA_MYCPE Alanine--tRNA ligase OS=Mycoplasma penetrans (strain HF-2) GN=alaS
PE=3 SV=1
Length = 930
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 63 SNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIF 122
+N+ ++D + KK+KE D ++K + I+ + E+KE +E+ K K + ++
Sbjct: 743 NNVIKKAIDDFNNYFKKYKELNIKDDEVEKYKKTDINSIHYLELKEINEILKNKINTLVI 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,904,331
Number of Sequences: 539616
Number of extensions: 7147285
Number of successful extensions: 15340
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15319
Number of HSP's gapped (non-prelim): 17
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)