Query 014642
Match_columns 421
No_of_seqs 146 out of 282
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10354 DUF2431: Domain of un 100.0 5.3E-63 1.2E-67 448.7 16.8 166 42-208 1-166 (166)
2 KOG4174 Uncharacterized conser 100.0 5.6E-56 1.2E-60 427.2 16.3 206 25-230 44-255 (282)
3 TIGR00091 tRNA (guanine-N(7)-) 97.8 4.3E-05 9.4E-10 70.3 7.0 146 31-191 9-155 (194)
4 KOG4174 Uncharacterized conser 97.6 5.9E-06 1.3E-10 81.6 -2.1 127 49-197 1-127 (282)
5 PRK14968 putative methyltransf 97.3 0.012 2.5E-07 52.2 15.1 141 36-192 22-171 (188)
6 PF05175 MTS: Methyltransferas 97.3 0.00067 1.5E-08 61.2 6.9 114 37-171 31-144 (170)
7 PF13659 Methyltransf_26: Meth 97.2 0.00059 1.3E-08 56.2 4.8 115 39-168 2-116 (117)
8 PRK09489 rsmC 16S ribosomal RN 97.1 0.002 4.4E-08 65.4 9.3 114 39-176 198-312 (342)
9 PRK00107 gidB 16S rRNA methylt 97.1 0.013 2.7E-07 54.9 13.3 147 17-197 16-172 (187)
10 TIGR02752 MenG_heptapren 2-hep 97.1 0.02 4.2E-07 53.2 14.2 109 35-167 43-151 (231)
11 PRK14902 16S rRNA methyltransf 97.0 0.017 3.8E-07 59.9 15.0 146 36-191 249-405 (444)
12 TIGR03534 RF_mod_PrmC protein- 97.0 0.012 2.6E-07 54.7 12.4 140 38-192 88-239 (251)
13 PRK14901 16S rRNA methyltransf 96.9 0.024 5.1E-07 58.9 14.7 148 37-190 252-409 (434)
14 TIGR00138 gidB 16S rRNA methyl 96.9 0.011 2.4E-07 54.6 10.7 132 37-198 42-173 (181)
15 TIGR00446 nop2p NOL1/NOP2/sun 96.9 0.024 5.2E-07 55.0 13.5 143 36-189 70-223 (264)
16 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.0097 2.1E-07 65.6 11.7 161 24-201 525-688 (702)
17 TIGR03704 PrmC_rel_meth putati 96.8 0.028 6E-07 54.4 13.5 138 38-190 87-236 (251)
18 PRK14903 16S rRNA methyltransf 96.8 0.03 6.6E-07 58.4 14.4 145 36-192 236-393 (431)
19 PRK11873 arsM arsenite S-adeno 96.7 0.034 7.4E-07 53.2 13.5 139 34-196 74-232 (272)
20 smart00828 PKS_MT Methyltransf 96.7 0.049 1.1E-06 50.3 14.0 133 39-198 1-148 (224)
21 PRK09328 N5-glutamine S-adenos 96.7 0.041 9E-07 52.2 13.8 142 36-192 107-260 (275)
22 PRK14967 putative methyltransf 96.7 0.062 1.3E-06 50.4 14.5 141 36-192 35-182 (223)
23 PRK10901 16S rRNA methyltransf 96.7 0.051 1.1E-06 56.3 15.2 145 36-191 243-398 (427)
24 PRK15001 SAM-dependent 23S rib 96.7 0.0093 2E-07 61.7 9.8 134 39-194 230-373 (378)
25 TIGR00537 hemK_rel_arch HemK-r 96.7 0.083 1.8E-06 47.7 14.5 138 37-192 19-163 (179)
26 TIGR01177 conserved hypothetic 96.6 0.034 7.4E-07 55.5 13.1 134 35-192 180-313 (329)
27 PRK14904 16S rRNA methyltransf 96.6 0.06 1.3E-06 56.1 15.1 142 36-191 249-403 (445)
28 PRK00121 trmB tRNA (guanine-N( 96.5 0.011 2.5E-07 54.9 8.3 145 29-190 31-177 (202)
29 TIGR03533 L3_gln_methyl protei 96.5 0.059 1.3E-06 53.1 13.4 135 38-188 122-268 (284)
30 cd02440 AdoMet_MTases S-adenos 96.3 0.053 1.1E-06 40.9 9.6 103 40-166 1-103 (107)
31 PRK11188 rrmJ 23S rRNA methylt 96.3 0.043 9.2E-07 51.7 10.7 121 33-174 47-172 (209)
32 TIGR00563 rsmB ribosomal RNA s 96.2 0.14 3E-06 53.1 15.1 143 36-189 237-392 (426)
33 TIGR00438 rrmJ cell division p 96.2 0.047 1E-06 49.7 10.3 115 35-170 30-149 (188)
34 PRK15128 23S rRNA m(5)C1962 me 96.2 0.069 1.5E-06 55.5 12.5 161 26-201 209-377 (396)
35 PRK03612 spermidine synthase; 96.1 0.033 7.1E-07 59.5 10.3 135 37-187 297-437 (521)
36 PF02353 CMAS: Mycolic acid cy 96.1 0.049 1.1E-06 53.8 10.7 130 35-196 60-219 (273)
37 PRK01581 speE spermidine synth 96.1 0.046 9.9E-07 56.9 10.6 144 37-196 150-299 (374)
38 PF12847 Methyltransf_18: Meth 96.0 0.048 1E-06 44.4 8.4 110 37-167 1-111 (112)
39 PRK08287 cobalt-precorrin-6Y C 95.9 0.062 1.3E-06 48.8 9.4 129 36-196 30-158 (187)
40 TIGR02469 CbiT precorrin-6Y C5 95.8 0.25 5.3E-06 40.5 12.0 105 37-168 19-123 (124)
41 PRK14966 unknown domain/N5-glu 95.8 0.14 3.1E-06 54.1 13.2 143 36-192 250-403 (423)
42 PRK14121 tRNA (guanine-N(7)-)- 95.8 0.074 1.6E-06 55.6 10.7 133 38-189 123-256 (390)
43 TIGR00417 speE spermidine synt 95.6 0.059 1.3E-06 52.4 8.9 109 38-166 73-185 (270)
44 PRK04457 spermidine synthase; 95.6 0.028 6.1E-07 54.8 6.5 116 37-172 66-182 (262)
45 PRK01544 bifunctional N5-gluta 95.5 0.14 3E-06 54.8 11.7 140 38-192 139-291 (506)
46 PLN02244 tocopherol O-methyltr 95.4 0.51 1.1E-05 47.6 14.9 138 36-203 117-287 (340)
47 PRK00216 ubiE ubiquinone/menaq 95.4 0.36 7.9E-06 44.1 12.7 107 37-166 51-157 (239)
48 PRK05134 bifunctional 3-demeth 95.4 0.29 6.3E-06 45.6 12.2 127 37-192 48-203 (233)
49 PRK00377 cbiT cobalt-precorrin 95.4 0.23 5.1E-06 45.7 11.4 130 35-192 38-168 (198)
50 PRK11805 N5-glutamine S-adenos 95.4 0.18 3.9E-06 50.5 11.4 135 39-189 135-281 (307)
51 PLN02233 ubiquinone biosynthes 95.3 0.72 1.6E-05 44.8 15.2 109 36-168 72-183 (261)
52 PF13847 Methyltransf_31: Meth 95.3 0.086 1.9E-06 46.1 7.9 111 36-169 2-112 (152)
53 PRK04266 fibrillarin; Provisio 95.3 0.78 1.7E-05 44.2 15.0 136 35-196 70-212 (226)
54 COG4123 Predicted O-methyltran 95.2 0.22 4.8E-06 49.3 11.2 150 30-193 38-193 (248)
55 TIGR01934 MenG_MenH_UbiE ubiqu 95.1 0.51 1.1E-05 42.7 12.6 104 37-166 39-142 (223)
56 PF02390 Methyltransf_4: Putat 95.1 0.031 6.7E-07 52.4 4.8 149 28-191 7-157 (195)
57 PRK08317 hypothetical protein; 95.1 0.33 7.1E-06 44.0 11.2 109 34-168 16-125 (241)
58 PRK11207 tellurite resistance 95.0 1.4 3E-05 40.9 15.4 105 36-168 29-136 (197)
59 TIGR00080 pimt protein-L-isoas 95.0 0.32 6.9E-06 45.4 11.2 104 36-169 76-179 (215)
60 PLN02490 MPBQ/MSBQ methyltrans 95.0 0.49 1.1E-05 48.6 13.4 139 36-202 112-264 (340)
61 PRK11036 putative S-adenosyl-L 94.9 0.4 8.7E-06 45.8 11.9 106 36-169 43-151 (255)
62 PRK00811 spermidine synthase; 94.8 0.28 6.2E-06 48.3 10.8 109 37-166 76-190 (283)
63 COG1041 Predicted DNA modifica 94.7 0.36 7.8E-06 50.0 11.6 123 44-192 206-328 (347)
64 TIGR00536 hemK_fam HemK family 94.6 0.38 8.2E-06 47.1 11.1 136 39-190 116-265 (284)
65 TIGR01983 UbiG ubiquinone bios 94.3 0.76 1.6E-05 42.2 11.9 103 37-169 45-151 (224)
66 COG0144 Sun tRNA and rRNA cyto 94.0 0.76 1.6E-05 47.1 12.3 105 87-192 199-315 (355)
67 COG0220 Predicted S-adenosylme 93.8 0.25 5.3E-06 48.1 7.8 139 28-183 37-179 (227)
68 PTZ00098 phosphoethanolamine N 93.7 1.3 2.7E-05 43.2 12.7 105 35-167 50-156 (263)
69 COG2813 RsmC 16S RNA G1207 met 93.7 0.55 1.2E-05 47.8 10.3 133 38-193 159-298 (300)
70 PTZ00146 fibrillarin; Provisio 93.6 3.1 6.8E-05 42.2 15.6 136 33-196 128-273 (293)
71 PRK01544 bifunctional N5-gluta 93.4 0.3 6.6E-06 52.2 8.4 135 38-191 348-485 (506)
72 PLN02366 spermidine synthase 93.2 0.42 9.2E-06 48.2 8.8 112 36-164 90-203 (308)
73 PRK13944 protein-L-isoaspartat 93.2 1.3 2.9E-05 41.3 11.4 106 36-170 71-176 (205)
74 PRK11933 yebU rRNA (cytosine-C 93.2 1.4 3.1E-05 47.1 13.0 136 38-185 114-261 (470)
75 PRK06922 hypothetical protein; 93.2 0.56 1.2E-05 52.4 10.2 118 32-166 413-536 (677)
76 PRK15451 tRNA cmo(5)U34 methyl 92.9 0.86 1.9E-05 43.6 10.0 108 37-167 56-164 (247)
77 TIGR02716 C20_methyl_CrtF C-20 92.9 3 6.5E-05 41.0 13.9 106 34-166 146-253 (306)
78 PF02475 Met_10: Met-10+ like- 92.7 0.18 3.8E-06 48.1 4.9 101 35-164 99-199 (200)
79 KOG2904 Predicted methyltransf 92.4 1.1 2.3E-05 46.0 10.2 121 40-168 151-286 (328)
80 TIGR00740 methyltransferase, p 92.4 1.6 3.4E-05 41.2 10.9 107 36-166 52-160 (239)
81 PHA03411 putative methyltransf 92.3 1.8 3.8E-05 43.8 11.6 134 38-190 65-210 (279)
82 PF01861 DUF43: Protein of unk 92.2 1.2 2.7E-05 44.1 10.2 132 37-196 44-181 (243)
83 PRK11705 cyclopropane fatty ac 92.2 1.2 2.7E-05 46.0 10.6 100 36-167 166-267 (383)
84 PF13649 Methyltransf_25: Meth 92.1 0.32 6.9E-06 39.7 5.1 98 41-161 1-101 (101)
85 PRK14103 trans-aconitate 2-met 91.7 1.7 3.8E-05 41.4 10.5 100 36-168 28-127 (255)
86 PLN02336 phosphoethanolamine N 91.7 2.2 4.7E-05 44.5 11.9 102 36-167 265-369 (475)
87 TIGR00477 tehB tellurite resis 91.7 1.9 4.2E-05 39.8 10.4 102 38-167 31-134 (195)
88 PRK01683 trans-aconitate 2-met 91.6 2.1 4.6E-05 40.5 10.9 103 36-169 30-132 (258)
89 TIGR00452 methyltransferase, p 91.3 5.8 0.00013 40.3 14.1 143 38-210 122-287 (314)
90 PF01170 UPF0020: Putative RNA 91.2 1.7 3.8E-05 40.1 9.6 111 43-169 36-152 (179)
91 PRK13943 protein-L-isoaspartat 91.2 2.2 4.8E-05 43.4 11.1 105 35-169 78-182 (322)
92 PF01564 Spermine_synth: Sperm 91.1 0.43 9.3E-06 46.4 5.6 146 37-202 76-227 (246)
93 PF08241 Methyltransf_11: Meth 90.8 0.74 1.6E-05 35.5 5.7 95 42-165 1-95 (95)
94 TIGR00479 rumA 23S rRNA (uraci 90.7 2.3 4.9E-05 44.0 10.9 135 37-203 292-427 (431)
95 PRK00517 prmA ribosomal protei 90.2 7 0.00015 37.6 13.0 120 36-193 118-237 (250)
96 PRK13168 rumA 23S rRNA m(5)U19 90.1 5.2 0.00011 41.9 12.9 136 37-204 297-432 (443)
97 PRK15068 tRNA mo(5)U34 methylt 89.9 4.5 9.8E-05 40.8 11.9 133 37-196 122-276 (322)
98 PLN02396 hexaprenyldihydroxybe 89.7 4.8 0.0001 41.0 12.0 130 37-195 131-290 (322)
99 COG2230 Cfa Cyclopropane fatty 89.6 3.5 7.7E-05 41.7 10.8 137 34-198 69-227 (283)
100 KOG1122 tRNA and rRNA cytosine 89.5 2.9 6.3E-05 44.8 10.5 109 88-198 284-404 (460)
101 PF01135 PCMT: Protein-L-isoas 89.2 1.2 2.6E-05 42.7 6.8 106 35-170 70-175 (209)
102 COG2519 GCD14 tRNA(1-methylade 89.0 3.7 8.1E-05 41.1 10.3 104 36-170 93-198 (256)
103 PRK12335 tellurite resistance 88.9 4 8.6E-05 40.0 10.5 101 37-165 120-221 (287)
104 PRK00312 pcm protein-L-isoaspa 88.8 5 0.00011 37.1 10.6 100 36-168 77-176 (212)
105 COG2890 HemK Methylase of poly 88.8 5.6 0.00012 39.5 11.5 137 40-192 113-261 (280)
106 TIGR02072 BioC biotin biosynth 88.6 4.1 8.9E-05 37.1 9.7 102 38-168 35-136 (240)
107 PF10672 Methyltrans_SAM: S-ad 88.4 0.19 4.2E-06 50.4 1.0 158 24-202 110-273 (286)
108 PRK13942 protein-L-isoaspartat 88.0 6.3 0.00014 37.1 10.8 104 36-169 75-178 (212)
109 TIGR02021 BchM-ChlM magnesium 87.2 7 0.00015 36.3 10.5 131 36-196 54-208 (219)
110 PRK06940 short chain dehydroge 86.7 5.8 0.00012 38.0 9.9 77 39-125 3-85 (275)
111 PLN02336 phosphoethanolamine N 86.6 3.8 8.2E-05 42.7 9.3 105 36-166 36-141 (475)
112 TIGR00406 prmA ribosomal prote 85.9 9.9 0.00021 37.5 11.3 101 37-168 159-260 (288)
113 PF08704 GCD14: tRNA methyltra 85.7 3 6.5E-05 41.2 7.5 130 36-195 39-172 (247)
114 PF13489 Methyltransf_23: Meth 85.6 1.8 3.9E-05 36.9 5.3 119 36-191 21-160 (161)
115 PLN02823 spermine synthase 84.7 2.9 6.2E-05 42.9 7.1 114 38-166 104-219 (336)
116 COG1092 Predicted SAM-dependen 84.1 2.7 5.9E-05 44.2 6.8 164 24-204 204-377 (393)
117 PRK10909 rsmD 16S rRNA m(2)G96 84.1 6 0.00013 37.5 8.5 113 32-170 48-162 (199)
118 PLN02781 Probable caffeoyl-CoA 83.0 4.1 9E-05 39.2 7.1 112 32-166 63-177 (234)
119 PRK07580 Mg-protoporphyrin IX 81.9 21 0.00046 32.8 11.1 131 36-198 62-218 (230)
120 TIGR03840 TMPT_Se_Te thiopurin 81.6 45 0.00098 31.8 13.4 111 37-168 34-154 (213)
121 PRK09880 L-idonate 5-dehydroge 81.4 11 0.00024 37.1 9.6 96 37-166 169-265 (343)
122 COG2520 Predicted methyltransf 81.2 3.7 8E-05 42.6 6.4 124 33-187 184-313 (341)
123 PRK06202 hypothetical protein; 80.5 31 0.00066 32.4 11.8 79 36-125 59-138 (232)
124 PRK03522 rumB 23S rRNA methylu 80.3 29 0.00064 34.6 12.2 132 38-205 174-305 (315)
125 PRK10258 biotin biosynthesis p 80.3 15 0.00033 34.7 9.8 102 37-170 42-143 (251)
126 COG2227 UbiG 2-polyprenyl-3-me 80.2 11 0.00024 37.6 9.0 105 37-169 59-163 (243)
127 PRK06128 oxidoreductase; Provi 78.6 26 0.00056 33.9 11.0 80 38-124 55-142 (300)
128 PF01189 Nol1_Nop2_Fmu: NOL1/N 78.6 3.4 7.3E-05 41.0 5.0 137 45-191 95-245 (283)
129 PRK00536 speE spermidine synth 78.4 14 0.0003 37.0 9.1 95 38-165 73-169 (262)
130 PRK13699 putative methylase; P 77.9 6.4 0.00014 37.9 6.5 93 96-198 3-100 (227)
131 PRK02842 light-independent pro 77.0 2.9 6.4E-05 43.6 4.2 67 34-108 286-354 (427)
132 PRK07402 precorrin-6B methylas 76.5 30 0.00064 31.7 10.2 105 36-168 39-143 (196)
133 PRK11088 rrmA 23S rRNA methylt 76.5 22 0.00047 34.5 9.8 109 37-181 85-193 (272)
134 COG0421 SpeE Spermidine syntha 76.3 7.5 0.00016 39.1 6.7 115 39-173 78-194 (282)
135 PRK11727 23S rRNA mA1618 methy 74.3 12 0.00026 38.4 7.6 124 37-168 114-248 (321)
136 TIGR02081 metW methionine bios 74.2 71 0.0015 29.2 12.5 71 37-125 13-84 (194)
137 PLN02476 O-methyltransferase 72.4 14 0.0003 37.3 7.5 115 29-166 110-227 (278)
138 COG3963 Phospholipid N-methylt 71.6 18 0.00038 35.0 7.5 113 32-170 43-158 (194)
139 PLN02232 ubiquinone biosynthes 71.5 14 0.00031 33.1 6.7 57 94-169 27-83 (160)
140 PRK10309 galactitol-1-phosphat 70.7 24 0.00052 34.6 8.6 100 35-166 158-259 (347)
141 COG2226 UbiE Methylase involve 70.4 30 0.00065 34.2 9.1 108 37-172 51-160 (238)
142 PRK07985 oxidoreductase; Provi 70.1 44 0.00095 32.5 10.2 81 38-125 49-137 (294)
143 COG2518 Pcm Protein-L-isoaspar 69.7 20 0.00043 35.0 7.6 99 35-168 70-170 (209)
144 PF01209 Ubie_methyltran: ubiE 69.4 15 0.00033 35.5 6.9 109 36-168 46-154 (233)
145 PRK07806 short chain dehydroge 69.3 32 0.00069 31.6 8.7 118 38-164 6-131 (248)
146 PF10294 Methyltransf_16: Puta 68.6 14 0.00031 33.7 6.2 115 34-170 42-159 (173)
147 PLN03075 nicotianamine synthas 66.6 58 0.0012 33.3 10.5 112 37-170 123-236 (296)
148 PF08468 MTS_N: Methyltransfer 66.0 16 0.00036 33.6 6.0 92 38-167 13-105 (155)
149 PRK04338 N(2),N(2)-dimethylgua 65.7 30 0.00065 36.1 8.6 105 39-172 59-163 (382)
150 PRK09489 rsmC 16S ribosomal RN 65.5 33 0.00073 35.2 8.7 97 37-170 19-115 (342)
151 TIGR02987 met_A_Alw26 type II 65.2 48 0.001 35.4 10.2 125 43-170 39-199 (524)
152 PRK06077 fabG 3-ketoacyl-(acyl 65.1 79 0.0017 28.9 10.3 80 38-125 6-93 (252)
153 PF08242 Methyltransf_12: Meth 64.4 17 0.00037 29.1 5.2 97 44-163 3-99 (99)
154 PRK12744 short chain dehydroge 64.4 84 0.0018 29.2 10.5 81 38-123 8-96 (257)
155 TIGR02085 meth_trns_rumB 23S r 64.2 70 0.0015 33.0 10.8 131 38-204 234-364 (374)
156 KOG3191 Predicted N6-DNA-methy 63.8 89 0.0019 30.7 10.6 119 41-172 47-174 (209)
157 PRK06701 short chain dehydroge 63.4 68 0.0015 31.1 10.0 79 38-124 46-132 (290)
158 TIGR00308 TRM1 tRNA(guanine-26 63.2 31 0.00067 36.0 8.1 105 40-171 47-151 (374)
159 smart00138 MeTrc Methyltransfe 62.9 38 0.00083 33.2 8.3 46 114-171 201-246 (264)
160 PF07021 MetW: Methionine bios 62.6 1.3E+02 0.0027 29.3 11.4 127 37-198 13-171 (193)
161 PLN02672 methionine S-methyltr 61.6 1E+02 0.0022 36.9 12.6 142 38-192 119-301 (1082)
162 PF00106 adh_short: short chai 61.2 63 0.0014 27.6 8.5 81 40-128 2-92 (167)
163 TIGR03451 mycoS_dep_FDH mycoth 60.4 54 0.0012 32.5 8.9 100 34-166 173-275 (358)
164 PRK08159 enoyl-(acyl carrier p 60.0 1.5E+02 0.0033 28.4 11.7 78 38-124 10-96 (272)
165 PF00891 Methyltransf_2: O-met 59.6 44 0.00095 31.5 7.8 101 33-166 96-198 (241)
166 PHA03412 putative methyltransf 59.5 39 0.00086 33.7 7.7 107 38-163 50-158 (241)
167 KOG1270 Methyltransferases [Co 59.4 52 0.0011 33.6 8.6 108 38-169 90-197 (282)
168 PRK13656 trans-2-enoyl-CoA red 59.0 26 0.00057 37.3 6.7 88 36-124 39-139 (398)
169 PF05148 Methyltransf_8: Hypot 58.2 11 0.00025 37.0 3.7 76 101-192 108-183 (219)
170 cd08230 glucose_DH Glucose deh 56.6 95 0.0021 30.7 9.9 94 36-165 171-267 (355)
171 PRK07533 enoyl-(acyl carrier p 56.4 1E+02 0.0023 29.0 9.8 78 38-124 10-96 (258)
172 TIGR01279 DPOR_bchN light-inde 56.4 13 0.00028 38.6 4.0 65 35-108 271-337 (407)
173 cd08294 leukotriene_B4_DH_like 56.3 51 0.0011 31.5 7.7 96 35-165 141-239 (329)
174 PRK08415 enoyl-(acyl carrier p 55.6 1.1E+02 0.0024 29.6 9.9 74 38-123 5-90 (274)
175 PRK13255 thiopurine S-methyltr 55.4 1.8E+02 0.004 27.8 11.3 112 36-168 36-157 (218)
176 PRK06603 enoyl-(acyl carrier p 55.1 1.3E+02 0.0029 28.4 10.3 78 38-124 8-94 (260)
177 COG4122 Predicted O-methyltran 54.6 29 0.00063 33.9 5.8 112 31-166 53-165 (219)
178 cd08242 MDR_like Medium chain 54.4 1.2E+02 0.0025 29.1 9.9 89 34-165 152-243 (319)
179 cd05188 MDR Medium chain reduc 53.5 1.7E+02 0.0038 26.4 10.6 95 36-166 133-231 (271)
180 KOG1562 Spermidine synthase [A 53.4 33 0.00072 35.7 6.2 126 38-184 122-248 (337)
181 PRK12481 2-deoxy-D-gluconate 3 53.4 43 0.00092 31.4 6.6 75 38-123 8-90 (251)
182 PRK08303 short chain dehydroge 53.3 1.3E+02 0.0029 29.6 10.3 85 38-124 8-103 (305)
183 COG2242 CobL Precorrin-6B meth 52.8 2E+02 0.0043 27.9 10.9 106 36-170 33-138 (187)
184 PLN02740 Alcohol dehydrogenase 52.0 1.1E+02 0.0023 30.9 9.6 100 33-165 194-298 (381)
185 PRK07454 short chain dehydroge 52.0 44 0.00095 30.6 6.3 79 36-123 4-90 (241)
186 PRK05031 tRNA (uracil-5-)-meth 51.9 54 0.0012 33.7 7.5 133 39-205 208-352 (362)
187 PRK08085 gluconate 5-dehydroge 50.8 1.7E+02 0.0038 27.0 10.1 79 38-125 9-95 (254)
188 TIGR03438 probable methyltrans 50.6 1.8E+02 0.004 28.9 10.9 116 36-170 62-180 (301)
189 PRK08340 glucose-1-dehydrogena 50.6 46 0.001 31.1 6.3 76 40-124 2-84 (259)
190 PRK11524 putative methyltransf 50.0 26 0.00056 34.5 4.7 95 97-197 10-106 (284)
191 PRK05599 hypothetical protein; 50.0 61 0.0013 30.3 7.1 76 40-124 2-85 (246)
192 PRK06124 gluconate 5-dehydroge 49.7 2.1E+02 0.0047 26.4 11.0 79 37-124 10-96 (256)
193 KOG2198 tRNA cytosine-5-methyl 49.6 1.6E+02 0.0034 31.4 10.5 87 94-181 209-310 (375)
194 TIGR03587 Pse_Me-ase pseudamin 49.5 2.3E+02 0.005 26.7 12.2 77 32-125 38-114 (204)
195 COG0003 ArsA Predicted ATPase 48.5 30 0.00064 35.6 5.0 89 39-129 31-138 (322)
196 PRK07889 enoyl-(acyl carrier p 47.8 1.6E+02 0.0036 27.7 9.6 79 38-124 7-93 (256)
197 PF06080 DUF938: Protein of un 47.5 25 0.00055 34.1 4.1 134 40-194 28-192 (204)
198 PRK08594 enoyl-(acyl carrier p 47.5 1.8E+02 0.004 27.5 9.9 77 38-123 7-94 (257)
199 cd08254 hydroxyacyl_CoA_DH 6-h 47.3 89 0.0019 29.8 7.8 99 34-166 162-262 (338)
200 PLN02589 caffeoyl-CoA O-methyl 47.3 59 0.0013 32.1 6.7 110 33-165 75-188 (247)
201 TIGR01832 kduD 2-deoxy-D-gluco 47.2 65 0.0014 29.6 6.7 75 38-123 5-87 (248)
202 cd01979 Pchlide_reductase_N Pc 47.1 24 0.00052 36.4 4.2 75 37-122 275-351 (396)
203 cd00550 ArsA_ATPase Oxyanion-t 46.9 20 0.00042 34.8 3.3 86 38-129 28-137 (254)
204 PF01596 Methyltransf_3: O-met 46.5 39 0.00084 32.3 5.2 111 33-166 41-154 (205)
205 PRK06997 enoyl-(acyl carrier p 46.4 2.6E+02 0.0057 26.5 10.8 79 37-124 5-92 (260)
206 PRK06113 7-alpha-hydroxysteroi 46.4 2.5E+02 0.0053 26.1 11.2 81 38-127 11-99 (255)
207 KOG4300 Predicted methyltransf 46.2 54 0.0012 32.9 6.1 110 40-179 79-194 (252)
208 PRK06079 enoyl-(acyl carrier p 46.1 1.7E+02 0.0036 27.5 9.3 77 38-124 7-91 (252)
209 PRK06172 short chain dehydroge 46.0 2.4E+02 0.0053 26.0 11.1 79 38-125 7-93 (253)
210 TIGR00095 RNA methyltransferas 46.0 2E+02 0.0043 26.8 9.7 120 32-171 44-163 (189)
211 PRK06953 short chain dehydroge 45.8 2E+02 0.0044 26.1 9.6 73 39-125 2-79 (222)
212 cd00316 Oxidoreductase_nitroge 45.7 44 0.00094 33.7 5.7 78 35-122 276-354 (399)
213 PRK12859 3-ketoacyl-(acyl-carr 45.6 59 0.0013 30.5 6.2 88 38-125 6-105 (256)
214 TIGR02825 B4_12hDH leukotriene 45.5 78 0.0017 30.6 7.2 97 34-165 135-235 (325)
215 COG2265 TrmA SAM-dependent met 45.5 91 0.002 33.3 8.2 123 42-205 300-429 (432)
216 TIGR02822 adh_fam_2 zinc-bindi 45.4 1.6E+02 0.0035 29.0 9.5 89 35-165 163-252 (329)
217 COG4262 Predicted spermidine s 43.9 1.5E+02 0.0033 32.1 9.4 131 38-189 290-431 (508)
218 PRK06949 short chain dehydroge 43.3 59 0.0013 29.9 5.8 80 38-126 9-96 (258)
219 PRK08936 glucose-1-dehydrogena 42.9 1.1E+02 0.0023 28.6 7.4 79 38-124 7-93 (261)
220 PRK07666 fabG 3-ketoacyl-(acyl 42.6 2.1E+02 0.0046 26.1 9.3 79 38-125 7-93 (239)
221 PRK07523 gluconate 5-dehydroge 42.6 87 0.0019 29.0 6.8 78 38-124 10-95 (255)
222 PRK14106 murD UDP-N-acetylmura 42.6 93 0.002 32.0 7.6 75 37-128 4-79 (450)
223 TIGR02143 trmA_only tRNA (urac 42.4 1.4E+02 0.0031 30.6 8.9 133 39-205 199-343 (353)
224 PRK12824 acetoacetyl-CoA reduc 42.2 88 0.0019 28.4 6.7 77 39-123 3-87 (245)
225 PRK06505 enoyl-(acyl carrier p 41.9 2.1E+02 0.0046 27.4 9.5 75 38-124 7-93 (271)
226 cd08239 THR_DH_like L-threonin 41.5 1.3E+02 0.0027 29.3 8.0 97 36-165 162-260 (339)
227 PF08659 KR: KR domain; Inter 40.6 94 0.002 28.2 6.6 63 40-109 2-68 (181)
228 PRK12935 acetoacetyl-CoA reduc 40.5 2.9E+02 0.0063 25.3 10.7 79 37-123 5-91 (247)
229 PF14584 DUF4446: Protein of u 39.7 3.9 8.4E-05 37.8 -2.6 27 47-75 96-122 (151)
230 PRK12743 oxidoreductase; Provi 39.5 3.2E+02 0.0069 25.4 11.1 79 38-124 2-88 (256)
231 PRK07062 short chain dehydroge 39.5 97 0.0021 28.9 6.6 78 38-124 8-95 (265)
232 PRK07102 short chain dehydroge 39.4 3.1E+02 0.0066 25.2 10.3 81 39-128 2-88 (243)
233 PRK08416 7-alpha-hydroxysteroi 39.4 1.1E+02 0.0024 28.6 7.0 79 38-124 8-95 (260)
234 PRK12939 short chain dehydroge 38.8 89 0.0019 28.5 6.2 79 37-124 6-92 (250)
235 PRK06182 short chain dehydroge 38.7 2E+02 0.0044 27.0 8.7 74 38-125 3-83 (273)
236 PRK07478 short chain dehydroge 38.6 3.2E+02 0.007 25.2 11.0 80 38-126 6-93 (254)
237 PRK12826 3-ketoacyl-(acyl-carr 37.9 2.7E+02 0.0058 25.3 9.1 82 38-128 6-95 (251)
238 PRK07109 short chain dehydroge 37.9 90 0.002 31.2 6.5 77 38-123 8-92 (334)
239 PF00107 ADH_zinc_N: Zinc-bind 37.8 39 0.00085 28.1 3.4 87 50-170 4-92 (130)
240 PF03610 EIIA-man: PTS system 37.7 51 0.0011 28.0 4.1 56 40-100 1-65 (116)
241 PRK07791 short chain dehydroge 37.6 1.2E+02 0.0025 29.4 7.0 86 37-123 5-99 (286)
242 smart00650 rADc Ribosomal RNA 37.4 1.9E+02 0.0042 25.8 8.0 76 37-127 13-88 (169)
243 TIGR00824 EIIA-man PTS system, 37.4 73 0.0016 27.6 5.1 61 40-105 3-71 (116)
244 PRK07035 short chain dehydroge 36.3 3.5E+02 0.0075 24.9 10.0 80 38-126 8-95 (252)
245 PRK06114 short chain dehydroge 35.7 1.3E+02 0.0028 28.0 6.8 80 38-125 8-95 (254)
246 PRK08217 fabG 3-ketoacyl-(acyl 35.4 1.2E+02 0.0026 27.6 6.5 78 38-125 5-91 (253)
247 KOG3045 Predicted RNA methylas 35.3 84 0.0018 32.5 5.8 45 112-171 224-268 (325)
248 COG2264 PrmA Ribosomal protein 34.8 3.8E+02 0.0081 27.7 10.4 133 30-193 154-287 (300)
249 PF01522 Polysacc_deac_1: Poly 34.8 1.3E+02 0.0028 24.6 6.0 111 41-189 9-122 (123)
250 PRK12745 3-ketoacyl-(acyl-carr 34.8 1.2E+02 0.0027 27.8 6.5 78 39-124 3-88 (256)
251 PRK12937 short chain dehydroge 34.7 3.5E+02 0.0077 24.5 10.2 79 38-124 5-91 (245)
252 PRK08339 short chain dehydroge 34.2 4.1E+02 0.0089 25.1 10.3 77 38-123 8-92 (263)
253 PRK06947 glucose-1-dehydrogena 34.2 1.5E+02 0.0033 27.2 6.9 78 39-124 3-88 (248)
254 PLN02253 xanthoxin dehydrogena 34.0 97 0.0021 29.2 5.8 78 38-124 18-102 (280)
255 PRK07792 fabG 3-ketoacyl-(acyl 34.0 3.3E+02 0.0072 26.6 9.6 79 38-124 12-97 (306)
256 PRK05565 fabG 3-ketoacyl-(acyl 33.9 1E+02 0.0023 27.9 5.8 81 38-127 5-94 (247)
257 PRK07890 short chain dehydroge 33.7 1.3E+02 0.0029 27.6 6.5 79 37-124 4-90 (258)
258 PRK05867 short chain dehydroge 33.5 1.3E+02 0.0028 27.9 6.5 78 38-124 9-94 (253)
259 KOG1661 Protein-L-isoaspartate 33.2 2.9E+02 0.0062 27.8 8.8 106 35-169 80-195 (237)
260 PRK05993 short chain dehydroge 32.6 1.1E+02 0.0024 29.1 5.9 72 38-123 4-83 (277)
261 PRK05786 fabG 3-ketoacyl-(acyl 32.5 3.8E+02 0.0083 24.3 10.6 121 38-167 5-135 (238)
262 PRK08213 gluconate 5-dehydroge 32.4 1.4E+02 0.0031 27.7 6.5 78 38-124 12-97 (259)
263 TIGR03366 HpnZ_proposed putati 32.3 91 0.002 29.8 5.3 94 37-165 120-216 (280)
264 KOG3889 Predicted gamma-butyro 32.2 77 0.0017 33.0 4.9 114 62-206 217-350 (371)
265 PF03602 Cons_hypoth95: Conser 32.0 47 0.001 31.1 3.2 106 43-170 50-156 (183)
266 PRK09496 trkA potassium transp 32.0 80 0.0017 32.3 5.2 74 38-126 231-307 (453)
267 cd00006 PTS_IIA_man PTS_IIA, P 31.9 1.1E+02 0.0025 26.2 5.4 57 40-101 2-66 (122)
268 PRK08690 enoyl-(acyl carrier p 31.7 1.3E+02 0.0029 28.4 6.3 75 37-123 5-91 (261)
269 cd02008 TPP_IOR_alpha Thiamine 31.6 50 0.0011 30.1 3.3 36 38-73 70-107 (178)
270 PRK07814 short chain dehydroge 31.4 1.3E+02 0.0029 28.2 6.2 75 38-123 10-94 (263)
271 PRK05875 short chain dehydroge 31.4 3.6E+02 0.0079 25.2 9.1 78 38-124 7-94 (276)
272 PF02254 TrkA_N: TrkA-N domain 31.4 72 0.0016 26.2 3.9 70 41-125 1-71 (116)
273 PRK12823 benD 1,6-dihydroxycyc 31.2 1.7E+02 0.0037 27.1 6.8 77 38-124 8-92 (260)
274 PLN02702 L-idonate 5-dehydroge 30.7 1.5E+02 0.0032 29.4 6.6 55 35-102 179-234 (364)
275 PRK07831 short chain dehydroge 30.7 1.6E+02 0.0034 27.5 6.5 81 37-125 16-106 (262)
276 PRK08251 short chain dehydroge 30.6 4.2E+02 0.0092 24.2 9.5 77 39-124 3-89 (248)
277 PF00070 Pyr_redox: Pyridine n 30.1 55 0.0012 25.7 2.9 66 40-109 1-69 (80)
278 CHL00076 chlB photochlorophyll 30.0 67 0.0014 34.8 4.4 29 34-62 301-331 (513)
279 PRK06194 hypothetical protein; 29.9 1.4E+02 0.003 28.3 6.0 80 38-126 6-93 (287)
280 PRK12748 3-ketoacyl-(acyl-carr 29.8 2E+02 0.0044 26.7 7.1 86 38-124 5-103 (256)
281 PF07368 DUF1487: Protein of u 29.5 3.9E+02 0.0084 26.5 9.1 84 39-129 6-109 (215)
282 PRK08643 acetoin reductase; Va 29.5 1.8E+02 0.0038 26.9 6.6 78 38-124 2-87 (256)
283 PRK06483 dihydromonapterin red 29.1 1.9E+02 0.0041 26.4 6.6 73 39-124 3-82 (236)
284 PRK08589 short chain dehydroge 29.0 2E+02 0.0044 27.2 7.0 77 38-124 6-90 (272)
285 PRK06181 short chain dehydroge 28.8 4.7E+02 0.01 24.2 10.2 76 39-123 2-85 (263)
286 PRK09291 short chain dehydroge 28.6 1.7E+02 0.0037 26.9 6.3 76 39-123 3-80 (257)
287 cd08243 quinone_oxidoreductase 28.3 3.4E+02 0.0074 25.4 8.3 94 35-165 140-236 (320)
288 PRK07063 short chain dehydroge 28.2 1.8E+02 0.0038 27.1 6.4 77 38-123 7-93 (260)
289 PRK09242 tropinone reductase; 28.2 4.8E+02 0.011 24.1 9.7 78 38-124 9-96 (257)
290 PRK07904 short chain dehydroge 27.9 2E+02 0.0044 27.1 6.8 84 37-128 7-99 (253)
291 cd05285 sorbitol_DH Sorbitol d 27.7 1.4E+02 0.0031 29.0 5.9 97 35-165 160-263 (343)
292 COG2521 Predicted archaeal met 27.6 1.7E+02 0.0037 30.0 6.4 71 112-193 201-276 (287)
293 PF01555 N6_N4_Mtase: DNA meth 27.3 2.4E+02 0.0053 25.2 6.9 60 138-198 27-87 (231)
294 PRK09135 pteridine reductase; 27.3 4.7E+02 0.01 23.6 11.2 78 38-123 6-92 (249)
295 PF06962 rRNA_methylase: Putat 27.2 1.1E+02 0.0024 28.2 4.6 78 87-172 16-97 (140)
296 PRK12828 short chain dehydroge 27.1 1.6E+02 0.0035 26.4 5.8 79 38-126 7-92 (239)
297 PRK07677 short chain dehydroge 27.1 1.8E+02 0.0038 27.0 6.2 77 39-124 2-86 (252)
298 PF01936 NYN: NYN domain; Int 27.0 58 0.0013 27.6 2.7 30 38-67 97-126 (146)
299 PRK12429 3-hydroxybutyrate deh 26.7 2E+02 0.0043 26.3 6.4 79 38-125 4-90 (258)
300 PRK07074 short chain dehydroge 26.5 1.5E+02 0.0033 27.4 5.6 77 38-124 2-85 (257)
301 PRK07097 gluconate 5-dehydroge 26.4 5.4E+02 0.012 24.0 10.6 82 38-128 10-99 (265)
302 PRK08703 short chain dehydroge 26.4 2.2E+02 0.0049 26.0 6.6 78 38-124 6-95 (239)
303 cd08277 liver_alcohol_DH_like 26.3 1.5E+02 0.0033 29.5 5.9 51 34-97 181-232 (365)
304 PRK12771 putative glutamate sy 25.8 2E+02 0.0043 31.1 7.0 81 35-122 134-228 (564)
305 PRK06198 short chain dehydroge 25.8 1.9E+02 0.0042 26.7 6.2 77 38-123 6-91 (260)
306 COG0275 Predicted S-adenosylme 25.6 51 0.0011 34.2 2.4 36 135-170 210-247 (314)
307 KOG1271 Methyltransferases [Ge 25.6 3.3E+02 0.0071 27.1 7.7 130 39-194 69-205 (227)
308 PRK06196 oxidoreductase; Provi 25.5 1.4E+02 0.003 29.1 5.4 76 38-125 26-108 (315)
309 PRK06139 short chain dehydroge 25.5 1.6E+02 0.0034 29.6 5.9 78 38-124 7-92 (330)
310 PRK07775 short chain dehydroge 25.3 2.1E+02 0.0045 27.2 6.4 77 38-123 10-94 (274)
311 PRK12746 short chain dehydroge 25.3 5.3E+02 0.012 23.6 11.6 63 38-109 6-71 (254)
312 cd08291 ETR_like_1 2-enoyl thi 25.2 3.2E+02 0.007 26.4 7.8 74 38-128 143-221 (324)
313 PF05219 DREV: DREV methyltran 25.2 5.2E+02 0.011 26.4 9.3 96 37-168 94-189 (265)
314 PRK05866 short chain dehydroge 25.0 1.9E+02 0.0042 28.1 6.3 77 38-123 40-124 (293)
315 TIGR00692 tdh L-threonine 3-de 25.0 1.8E+02 0.0038 28.4 6.0 74 36-122 160-236 (340)
316 PRK08277 D-mannonate oxidoredu 24.9 2.2E+02 0.0048 26.8 6.4 77 38-123 10-94 (278)
317 PF03848 TehB: Tellurite resis 24.8 2.5E+02 0.0054 26.9 6.8 103 35-167 28-134 (192)
318 PF05368 NmrA: NmrA-like famil 24.8 4.5E+02 0.0097 24.2 8.3 72 41-128 1-76 (233)
319 PRK14896 ksgA 16S ribosomal RN 24.7 3.8E+02 0.0082 26.0 8.1 76 36-128 28-103 (258)
320 cd08281 liver_ADH_like1 Zinc-d 24.4 1.6E+02 0.0035 29.4 5.7 98 35-165 189-288 (371)
321 cd02006 TPP_Gcl Thiamine pyrop 24.4 64 0.0014 30.0 2.7 34 39-72 77-111 (202)
322 PRK06935 2-deoxy-D-gluconate 3 24.2 2.6E+02 0.0057 26.0 6.8 77 38-124 15-99 (258)
323 PRK08862 short chain dehydroge 24.1 6E+02 0.013 23.8 11.7 78 38-124 5-91 (227)
324 cd08234 threonine_DH_like L-th 23.8 1.8E+02 0.0039 27.9 5.7 74 34-121 156-231 (334)
325 PRK12384 sorbitol-6-phosphate 23.6 2.5E+02 0.0055 26.0 6.5 78 38-124 2-89 (259)
326 PRK07774 short chain dehydroge 23.6 2.5E+02 0.0054 25.7 6.4 80 38-126 6-93 (250)
327 KOG2380 Prephenate dehydrogena 23.5 1.3E+02 0.0029 32.3 5.0 83 24-108 38-123 (480)
328 KOG2741 Dimeric dihydrodiol de 23.4 2.5E+02 0.0055 29.7 7.0 89 37-128 31-166 (351)
329 PRK07370 enoyl-(acyl carrier p 23.3 2E+02 0.0044 27.1 5.9 83 37-125 5-96 (258)
330 PRK08628 short chain dehydroge 23.1 2.4E+02 0.0052 26.1 6.2 77 38-124 7-91 (258)
331 PRK00050 16S rRNA m(4)C1402 me 23.0 94 0.002 31.7 3.7 35 135-169 202-238 (296)
332 PRK06125 short chain dehydroge 23.0 2.8E+02 0.006 25.8 6.6 78 38-124 7-89 (259)
333 TIGR01289 LPOR light-dependent 22.9 2.3E+02 0.005 27.8 6.4 77 39-124 4-89 (314)
334 cd01971 Nitrogenase_VnfN_like 22.8 3.6E+02 0.0078 28.3 8.1 37 35-71 290-328 (427)
335 PRK09422 ethanol-active dehydr 22.7 5.1E+02 0.011 24.9 8.6 52 34-98 159-211 (338)
336 TIGR00006 S-adenosyl-methyltra 22.7 97 0.0021 31.8 3.8 35 135-169 206-242 (305)
337 cd08238 sorbose_phosphate_red 22.5 5.7E+02 0.012 26.2 9.3 37 35-71 173-212 (410)
338 PRK10669 putative cation:proto 22.2 1.9E+02 0.0041 31.2 6.1 75 36-125 415-490 (558)
339 PF01728 FtsJ: FtsJ-like methy 22.2 3.1E+02 0.0066 24.6 6.6 131 37-184 23-154 (181)
340 PF02384 N6_Mtase: N-6 DNA Met 22.2 44 0.00095 32.7 1.2 85 114-202 123-220 (311)
341 PF03291 Pox_MCEL: mRNA cappin 22.1 41 0.00089 34.6 1.0 92 62-171 85-190 (331)
342 KOG4549 Magnesium-dependent ph 22.0 73 0.0016 29.6 2.5 25 76-100 42-66 (144)
343 PRK08278 short chain dehydroge 22.0 1.9E+02 0.0041 27.5 5.4 84 38-125 6-99 (273)
344 PRK09496 trkA potassium transp 21.8 2.2E+02 0.0047 29.2 6.2 28 167-194 159-189 (453)
345 PRK05650 short chain dehydroge 21.8 2.4E+02 0.0053 26.4 6.1 77 40-125 2-86 (270)
346 PRK07576 short chain dehydroge 21.7 6.8E+02 0.015 23.5 9.8 78 37-123 8-93 (264)
347 PRK07832 short chain dehydroge 21.2 6.9E+02 0.015 23.5 10.6 76 40-124 2-86 (272)
348 PRK15001 SAM-dependent 23S rib 21.2 4.7E+02 0.01 27.6 8.5 96 40-170 47-145 (378)
349 PRK07453 protochlorophyllide o 20.9 1.8E+02 0.0039 28.4 5.2 78 37-123 5-90 (322)
350 cd00115 LMWPc Substituted upda 20.9 1.1E+02 0.0024 26.7 3.3 56 39-97 1-61 (141)
351 cd08274 MDR9 Medium chain dehy 20.8 2.9E+02 0.0064 26.6 6.5 73 34-121 174-248 (350)
352 PRK05693 short chain dehydroge 20.7 2.5E+02 0.0053 26.5 5.9 72 39-124 2-80 (274)
353 PRK05876 short chain dehydroge 20.6 3.3E+02 0.007 26.1 6.8 78 38-124 6-91 (275)
354 TIGR01202 bchC 2-desacetyl-2-h 20.5 6.6E+02 0.014 24.5 9.0 32 37-69 144-176 (308)
355 cd02015 TPP_AHAS Thiamine pyro 20.1 93 0.002 28.4 2.8 35 38-72 69-104 (186)
356 KOG1198 Zinc-binding oxidoredu 20.1 3.5E+02 0.0075 28.0 7.2 44 34-78 154-199 (347)
357 PRK08177 short chain dehydroge 20.0 2.3E+02 0.005 25.8 5.4 75 39-126 2-81 (225)
No 1
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=100.00 E-value=5.3e-63 Score=448.74 Aligned_cols=166 Identities=49% Similarity=0.911 Sum_probs=162.8
Q ss_pred EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEE
Q 014642 42 LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRII 121 (421)
Q Consensus 42 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrII 121 (421)
|||||||||||+|||++++++.+||||||||++++.+|||++.+||++|++.||+|+||||||+|++++.++.++|||||
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 89999999999999999988999999999999999999999999999999999999999999999999988999999999
Q ss_pred EcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCCCCCC
Q 014642 122 FNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYP 201 (421)
Q Consensus 122 FNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~~~YP 201 (421)
|||||+| .+.++++++|++||+||.+||+||+++|+++|+|||||++|+||++|||+++|+++||+|.++++|++++||
T Consensus 81 FNFPH~G-~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 81 FNFPHVG-GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred EeCCCCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 9999999 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccC
Q 014642 202 GYSNKKG 208 (421)
Q Consensus 202 GY~hKRt 208 (421)
||+||||
T Consensus 160 gY~~~rT 166 (166)
T PF10354_consen 160 GYEHKRT 166 (166)
T ss_pred CcccCCC
Confidence 9999997
No 2
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-56 Score=427.15 Aligned_cols=206 Identities=46% Similarity=0.807 Sum_probs=191.7
Q ss_pred ccccceeeeccCCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHH-HHHHhhhhHHHHHHHHHhCCCEEEeecc
Q 014642 25 EKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYE-TVVKKFKEARSNLDTLKKLGASIIHGVD 102 (421)
Q Consensus 25 ~~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~e-eL~~KY~~a~~Nl~~Lr~~Gv~VlhgVD 102 (421)
+..+++|++||++.++||+|||||||||+||+.++| ++.||+|||||+++ +|..||+++.+||++|+.+|+.|+|+||
T Consensus 44 ~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vd 123 (282)
T KOG4174|consen 44 DGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVD 123 (282)
T ss_pred ccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEeccc
Confidence 567899999999999999999999999999999999 89999999999999 9999999999999999999999999999
Q ss_pred cCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHH-HhHHHHHHHHHhhHhccC-CCCeEEEEecCCCCcCcccHHH
Q 014642 103 ATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIR-MHMSLVEGFFRNASGMLR-PRGEVHVSHKTTAPFCKWHIEE 180 (421)
Q Consensus 103 ATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~-~nr~LL~~FF~SA~~lL~-~~GeIHVTLk~g~PY~sWnI~~ 180 (421)
||+|+.++.+..++||+|||||||.|..-+-++++++. .||.|+.+||++|++||+ +.|+|||||++++||+.|||+.
T Consensus 124 v~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~ 203 (282)
T KOG4174|consen 124 VTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKF 203 (282)
T ss_pred ceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhH
Confidence 99999999999999999999999999633335566666 699999999999999999 8999999999999999999999
Q ss_pred HHHhCCcEEEEEeeCCCCCCCCCccccCCCCCCCCcccC--CCceeEEEEee
Q 014642 181 LARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPL--GKCSTFKFGLY 230 (421)
Q Consensus 181 LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G~r~Dk~F~~--g~a~TfvF~k~ 230 (421)
||++.||.|.+...|+++.||||.|||++|.+||.|+.. +++..|.|.+.
T Consensus 204 Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~~~ 255 (282)
T KOG4174|consen 204 LAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFLKF 255 (282)
T ss_pred hhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEEee
Confidence 999999999999999999999999999999999998775 45667777655
No 3
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.83 E-value=4.3e-05 Score=70.30 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=96.4
Q ss_pred eeeccC-CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642 31 WIMHYS-SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH 109 (421)
Q Consensus 31 ~i~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~ 109 (421)
|-.-|. ...+||=+|-|+=.|+.+||+.+. ..++++.-.. .++.+ .+..++....-.++.++ ..|+.++...
T Consensus 9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~--~~~l~---~a~~~~~~~~l~ni~~i-~~d~~~~~~~ 81 (194)
T TIGR00091 9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIH--TPIVL---AANNKANKLGLKNLHVL-CGDANELLDK 81 (194)
T ss_pred HHHHhCCCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEee--HHHHH---HHHHHHHHhCCCCEEEE-ccCHHHHHHh
Confidence 444444 456899999999999999998874 4567665443 33333 24455544322245544 4588765422
Q ss_pred cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642 110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR 189 (421)
Q Consensus 110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L 189 (421)
.+....+|.|+.|||..-.+.+. .++|.+...|++.+..+|+++|.|+++.... .|..|-++.+.+..+|..
T Consensus 82 -~~~~~~~d~v~~~~pdpw~k~~h------~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~-~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 82 -FFPDGSLSKVFLNFPDPWPKKRH------NKRRITQPHFLKEYANVLKKGGVIHFKTDNE-PLFEDMLKVLSENDLFEN 153 (194)
T ss_pred -hCCCCceeEEEEECCCcCCCCCc------cccccCCHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHhCCCeEe
Confidence 12345899999999865432211 1244556789999999999999999887553 578888888888777776
Q ss_pred EE
Q 014642 190 LD 191 (421)
Q Consensus 190 ~~ 191 (421)
..
T Consensus 154 ~~ 155 (194)
T TIGR00091 154 TS 155 (194)
T ss_pred cc
Confidence 54
No 4
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=5.9e-06 Score=81.56 Aligned_cols=127 Identities=19% Similarity=0.131 Sum_probs=105.9
Q ss_pred hhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEcCCCCC
Q 014642 49 FSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAG 128 (421)
Q Consensus 49 FSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G 128 (421)
|+|+++|-.......+++|||+.+..++.+ -|.+.+|+.-++..|..+.+.++.++.+.-..+..+-|+-+.+=+||.|
T Consensus 1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g 79 (282)
T KOG4174|consen 1 FGFAARLKETLDLSTQLTATCLQRPAELAR-DPLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG 79 (282)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhcc-ChhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence 688888877665567999999998888766 4788999999999999999999999999988888899999999999999
Q ss_pred CCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642 129 FHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRK 197 (421)
Q Consensus 129 ~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~ 197 (421)
. +++ .-.+..|...+| -|++.+|-..|||+.|++-.+.++.+.-++.-
T Consensus 80 ~--sa~----ni~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl 127 (282)
T KOG4174|consen 80 R--SAG----NITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDVTSL 127 (282)
T ss_pred c--ccc----ceeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccceeE
Confidence 4 121 224667777776 56778888999999999999999988755543
No 5
>PRK14968 putative methyltransferase; Provisional
Probab=97.33 E-value=0.012 Score=52.19 Aligned_cols=141 Identities=19% Similarity=0.242 Sum_probs=86.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hCCCEEEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK--KLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr--~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
.+..+||-+|=|+=.++..|++. +.+++++-.+. +..+ .++.|+.... ..++.++. .|+.+ . +.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~--~~~~---~a~~~~~~~~~~~~~~~~~~-~d~~~---~--~~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP--YAVE---CAKCNAKLNNIRNNGVEVIR-SDLFE---P--FR 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH--HHHH---HHHHHHHHcCCCCcceEEEe-ccccc---c--cc
Confidence 45678999999999999999886 45788766552 2222 2445554322 22254443 34432 1 22
Q ss_pred cCcccEEEEcCCCCCCCCCcccH--HHH-----HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDD--EVI-----RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS 186 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~--~~I-----~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG 186 (421)
...||.|++|.|........... ... ......+..|++.+..+|+++|.+.+.+.+.... =.+..+..++|
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--~~l~~~~~~~g 165 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--DEVLEYLEKLG 165 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--HHHHHHHHHCC
Confidence 34899999999976521000000 000 0125668899999999999999988877542211 13556777888
Q ss_pred cEEEEE
Q 014642 187 LLRLDC 192 (421)
Q Consensus 187 L~L~~~ 192 (421)
+.....
T Consensus 166 ~~~~~~ 171 (188)
T PRK14968 166 FEAEVV 171 (188)
T ss_pred Ceeeee
Confidence 876643
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.29 E-value=0.00067 Score=61.23 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...+||=+|=|.==.|++|++... ...|+|+-.+ ....+ -++.|++...-.++.|+. -|.- + .+...+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~--~~a~~---~a~~n~~~n~~~~v~~~~-~d~~---~--~~~~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDIN--PDALE---LAKRNAERNGLENVEVVQ-SDLF---E--ALPDGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESB--HHHHH---HHHHHHHHTTCTTEEEEE-SSTT---T--TCCTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCC--HHHHH---HHHHHHHhcCcccccccc-cccc---c--cccccc
Confidence 567899999999888888887753 3356666444 33332 355666655433444432 2332 2 233689
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
||.||+|-|.... .+ ....++..|++.|..+|+++|++.+-.....
T Consensus 99 fD~Iv~NPP~~~~--~~-------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 99 FDLIVSNPPFHAG--GD-------DGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp EEEEEE---SBTT--SH-------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eeEEEEccchhcc--cc-------cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 9999999995542 11 2456789999999999999999987665543
No 7
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.17 E-value=0.00059 Score=56.19 Aligned_cols=115 Identities=24% Similarity=0.237 Sum_probs=74.9
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD 118 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD 118 (421)
.+||=+|=|.=+|++++++.. ..++++.-.|....- -++.|+..+.-.+-.-++.-|+.++.+ .+...+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~-----~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVE-----LARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHH-----HHHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHH-----HHHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence 467778878888888888774 568888888754311 133454443222224566678877652 24568899
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 119 RIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 119 rIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.||+|-|..+..+ .....+.+...|++.|.++|+++|.+.+.+.
T Consensus 73 ~Iv~npP~~~~~~------~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 73 LIVTNPPYGPRSG------DKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEE--STTSBTT----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCCccccc------cchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999987422 1223445888999999999999999887653
No 8
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.14 E-value=0.002 Score=65.35 Aligned_cols=114 Identities=21% Similarity=0.327 Sum_probs=76.2
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD 118 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD 118 (421)
.+||=+|=|.=.++..|++... ...|+++-.+ ....+ .++.|++.-. ..+.+ +..|+.. . + ..+||
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis--~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~fD 263 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVS--AAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRFD 263 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCcc
Confidence 4799999999999999998753 3456655443 22332 2455554421 22333 2345432 1 1 46799
Q ss_pred EEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc
Q 014642 119 RIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW 176 (421)
Q Consensus 119 rIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW 176 (421)
.||.|.|. .|. + .+......|++.|.++|+++|+++|....--||..|
T Consensus 264 lIvsNPPFH~g~---~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~ 312 (342)
T PRK09489 264 MIISNPPFHDGI---Q-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL 312 (342)
T ss_pred EEEECCCccCCc---c-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence 99999994 442 1 234567899999999999999999988887888754
No 9
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.09 E-value=0.013 Score=54.86 Aligned_cols=147 Identities=18% Similarity=0.207 Sum_probs=99.3
Q ss_pred ecccccccccccceeeecc----------CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHH
Q 014642 17 EMSFTEKDEKEEEKWIMHY----------SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN 86 (421)
Q Consensus 17 ~~~~~~~~~~~~~K~i~~Y----------ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~N 86 (421)
+|.+-..... .+.|..|+ .+..+||=||=|.=.+|..+++... +..+++ .|..+++.+ .++.|
T Consensus 16 ~~~~~~~~~~-~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~g--iD~s~~~l~---~A~~~ 88 (187)
T PRK00107 16 KYNLTAIRDP-EELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARP-ELKVTL--VDSLGKKIA---FLREV 88 (187)
T ss_pred cccccccCCH-HHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEE--EeCcHHHHH---HHHHH
Confidence 4555444444 23666555 3367999999999999999988653 334544 565554443 35556
Q ss_pred HHHHHhCCCEEEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 87 LDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 87 l~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
++.+.-.++.++. -|+.++.. ..+||.|+.|. .+ + +..|++.+.++|+++|.+.+-
T Consensus 89 ~~~~~l~~i~~~~-~d~~~~~~-----~~~fDlV~~~~--~~-------------~---~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 89 AAELGLKNVTVVH-GRAEEFGQ-----EEKFDVVTSRA--VA-------------S---LSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHcCCCCEEEEe-ccHhhCCC-----CCCccEEEEcc--cc-------------C---HHHHHHHHHHhcCCCeEEEEE
Confidence 6655433454544 47776532 46899999873 11 1 357999999999999999988
Q ss_pred ecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642 167 HKTTAPFCKWHIEELARKHSLLRLDCVQFRK 197 (421)
Q Consensus 167 Lk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~ 197 (421)
.... ..+.++++++..|+.+.......-
T Consensus 145 ~~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 145 KGRD---PEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred eCCC---hHHHHHHHHHhcCceEeeeEEEec
Confidence 6443 556788999999999998876653
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.05 E-value=0.02 Score=53.16 Aligned_cols=109 Identities=18% Similarity=0.335 Sum_probs=71.3
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..++.+||=+|=|.=.++..|++..+...++++.-.. ++..+ .++.|+....-..+.++.+ |+.++. +..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~----~~~ 112 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLS---VGRQKVKDAGLHNVELVHG-NAMELP----FDD 112 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCceEEEEe-chhcCC----CCC
Confidence 3457899999999999999999987655567665443 23322 2555554433224444444 666553 335
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
..||.|+.++..--. ++ ...+++.+..+|+++|.+.+..
T Consensus 113 ~~fD~V~~~~~l~~~---~~-----------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNV---PD-----------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccC---CC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence 789999998763221 11 1256788889999999987654
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.03 E-value=0.017 Score=59.90 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=93.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=+|=|.=++|+.|++..+....|+|.-.+ +... ..++.|++.+.-.++. +..-|++++.... . .
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l---~~~~~n~~~~g~~~v~-~~~~D~~~~~~~~--~-~ 319 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKL---KLIEENAKRLGLTNIE-TKALDARKVHEKF--A-E 319 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHH---HHHHHHHHHcCCCeEE-EEeCCcccccchh--c-c
Confidence 456799999999999999999887544456665444 2222 2356666544222233 3445777764322 2 6
Q ss_pred cccEEEEcCCCCCCCCCc---c------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhC
Q 014642 116 KFDRIIFNFPHAGFHGKE---E------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKH 185 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkE---d------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~a 185 (421)
.||+|+.|-|..|. |.- . ....+..-..+-..++..|..+|+|||.+..+.|+-.|- +...|..+.++.
T Consensus 320 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 320 KFDKILVDAPCSGL-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred cCCEEEEcCCCCCC-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 79999999998874 310 0 112333344556789999999999999998877765442 455666655544
Q ss_pred -CcEEEE
Q 014642 186 -SLLRLD 191 (421)
Q Consensus 186 -GL~L~~ 191 (421)
++.++.
T Consensus 399 ~~~~~~~ 405 (444)
T PRK14902 399 PEFELVP 405 (444)
T ss_pred CCcEEec
Confidence 465543
No 12
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.01 E-value=0.012 Score=54.71 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=85.7
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=+|=|.=.|+.+|++.+. ..++++. |......+ .+..|++...-..+.+ ..-|+.+. +...+|
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~i--D~~~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~-----~~~~~f 155 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVTAV--DISPEALA---VARKNAARLGLDNVTF-LQSDWFEP-----LPGGKF 155 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCCCeEEE-EECchhcc-----CcCCce
Confidence 34899999999999999998763 3355544 43333322 3556665432212333 33355431 235789
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH 185 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a 185 (421)
|.||.|.|-............++. .-..+..|++.+..+|+++|.+.+.+-. ...-.+.++..++
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~ 232 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAA 232 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhC
Confidence 999999998864211111112221 1233568999999999999999887632 2334577778888
Q ss_pred CcEEEEE
Q 014642 186 SLLRLDC 192 (421)
Q Consensus 186 GL~L~~~ 192 (421)
|+..+..
T Consensus 233 gf~~v~~ 239 (251)
T TIGR03534 233 GFADVET 239 (251)
T ss_pred CCCceEE
Confidence 8865544
No 13
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.90 E-value=0.024 Score=58.92 Aligned_cols=148 Identities=19% Similarity=0.232 Sum_probs=97.3
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
++++||=+|=|-=.+|..|++..+....|+| .|..+...+ .++.|++.+.-..+ .+..-|++++..........
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~---~~~~n~~r~g~~~v-~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLK---KLQENAQRLGLKSI-KILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHH---HHHHHHHHcCCCeE-EEEeCChhhccccccccccc
Confidence 4678999999999999999987654345655 454333332 35667654422223 44557888875432223467
Q ss_pred ccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHh-CC
Q 014642 117 FDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARK-HS 186 (421)
Q Consensus 117 FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~-aG 186 (421)
||+|+.|=|+.|.+. + .+ ....+.....|....+.+|..+|++||.+..+.|+-.|- +.-.|..+.++ .+
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999999999988421 1 11 123444455667899999999999999999888887664 55666665444 46
Q ss_pred cEEE
Q 014642 187 LLRL 190 (421)
Q Consensus 187 L~L~ 190 (421)
+.+.
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 7654
No 14
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.86 E-value=0.011 Score=54.55 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=84.9
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
++.+||=||=|.=.+|..|+.... ..++ |..|...+..+ -++.|++.+.-.+++++. -|+.++. ....
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V--~~iD~s~~~~~---~a~~~~~~~~~~~i~~i~-~d~~~~~-----~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKL--TLLESNHKKVA---FLREVKAELGLNNVEIVN-GRAEDFQ-----HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeE--EEEeCcHHHHH---HHHHHHHHhCCCCeEEEe-cchhhcc-----ccCC
Confidence 478999999888888888876542 3345 45565444433 244555554322455444 4777752 2468
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~ 196 (421)
||.|+.|. .+. +..+++.+..+|+|+|.+.+.+.....-.-+.+++-+...|+..+++-+|.
T Consensus 110 fD~I~s~~--~~~----------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 110 FDVITSRA--LAS----------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ccEEEehh--hhC----------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence 99999874 210 235677778899999999988643322234455556666899999987776
Q ss_pred CC
Q 014642 197 KE 198 (421)
Q Consensus 197 ~~ 198 (421)
-.
T Consensus 172 ~~ 173 (181)
T TIGR00138 172 GP 173 (181)
T ss_pred CC
Confidence 44
No 15
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.86 E-value=0.024 Score=55.04 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=95.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=+|=|-=.+|..|++..+....|+| .|...... ..+++|++.+.-..+ .+..-|++.+... ..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l---~~~~~n~~~~g~~~v-~~~~~D~~~~~~~----~~ 139 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRT---KVLIANINRCGVLNV-AVTNFDGRVFGAA----VP 139 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHH---HHHHHHHHHcCCCcE-EEecCCHHHhhhh----cc
Confidence 45678999999999999999887754445554 45433332 346667765532223 3455677765432 24
Q ss_pred cccEEEEcCCCCCCCCC---c------ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHh-
Q 014642 116 KFDRIIFNFPHAGFHGK---E------EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARK- 184 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~Gk---E------d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~- 184 (421)
.||+|+.|=|+.|. |. . .....+.....+-...+.+|..+|+++|.+..+.|+-.|- +...|..+.++
T Consensus 140 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 140 KFDAILLDAPCSGE-GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred CCCEEEEcCCCCCC-cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 59999999999985 31 1 1233455556677889999999999999999888887664 56777775554
Q ss_pred CCcEE
Q 014642 185 HSLLR 189 (421)
Q Consensus 185 aGL~L 189 (421)
.++.+
T Consensus 219 ~~~~~ 223 (264)
T TIGR00446 219 PDVVE 223 (264)
T ss_pred CCcEE
Confidence 35543
No 16
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.82 E-value=0.0097 Score=65.62 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=99.8
Q ss_pred cccccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeec
Q 014642 24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHGV 101 (421)
Q Consensus 24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~VlhgV 101 (421)
|..++++|+..+.++.+||=+|=|.=.||+++++. | +..| |+.|.-+...+ -++.|++...-. .+ -+..-
T Consensus 525 Dqr~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V--~~vD~s~~al~---~a~~N~~~ng~~~~~v-~~i~~ 596 (702)
T PRK11783 525 DHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKST--TTVDMSNTYLE---WAERNFALNGLSGRQH-RLIQA 596 (702)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCccce-EEEEc
Confidence 44567888888888999999999999999999875 3 3344 44564444333 366676543211 12 23445
Q ss_pred ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHH
Q 014642 102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEEL 181 (421)
Q Consensus 102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~L 181 (421)
|+.+.-+. + ..+||.||.|-|-.+. ++... .+..-..-....+..|..+|+++|.+.++.+... +.. ..+.
T Consensus 597 D~~~~l~~--~-~~~fDlIilDPP~f~~-~~~~~--~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~ 667 (702)
T PRK11783 597 DCLAWLKE--A-REQFDLIFIDPPTFSN-SKRME--DSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEG 667 (702)
T ss_pred cHHHHHHH--c-CCCcCEEEECCCCCCC-CCccc--hhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHH
Confidence 66542211 1 4689999999998874 22200 1111122244566778899999999988776542 232 2667
Q ss_pred HHhCCcEEEEEe-eCCCCCCC
Q 014642 182 ARKHSLLRLDCV-QFRKEDYP 201 (421)
Q Consensus 182 Aa~aGL~L~~~~-~F~~~~YP 201 (421)
+.++|+.+.... .-.+.|+|
T Consensus 668 ~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 668 LAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred HHhCCCeEEEEecCCCCCCCC
Confidence 778888877664 33555665
No 17
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.81 E-value=0.028 Score=54.45 Aligned_cols=138 Identities=18% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=+|=|.=.++++|++... +.+++|.-.+ .+..+ -++.|++. .|++++ .-|+.+.-.. .+ ..+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis--~~al~---~A~~N~~~---~~~~~~-~~D~~~~l~~-~~-~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADID--PAAVR---CARRNLAD---AGGTVH-EGDLYDALPT-AL-RGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHH---cCCEEE-Eeechhhcch-hc-CCCE
Confidence 45899999999899999987763 3467765443 22222 35666643 355553 3465542111 11 2579
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH 185 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a 185 (421)
|.||.|-|-............++.+ .+++..++.+|..+|+++|.+.+.+-..+ .-.|.++.++.
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~ 231 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARA 231 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHC
Confidence 9999999988642111111122222 34578999999999999999998876543 33677778777
Q ss_pred CcEEE
Q 014642 186 SLLRL 190 (421)
Q Consensus 186 GL~L~ 190 (421)
||...
T Consensus 232 g~~~~ 236 (251)
T TIGR03704 232 GLIAR 236 (251)
T ss_pred CCCce
Confidence 77544
No 18
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.78 E-value=0.03 Score=58.39 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=96.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk 113 (421)
.++.+||=+|=|-=..|..++...+.+..|+|.-.+ .+-+ ..+++|++. .|+. .+...|++++... .
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis-~~rl----~~~~~n~~r---~g~~~v~~~~~Da~~l~~~---~ 304 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS-REKI----QLVEKHAKR---LKLSSIEIKIADAERLTEY---V 304 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC-HHHH----HHHHHHHHH---cCCCeEEEEECchhhhhhh---h
Confidence 456788888888778888888776545567766443 2222 235666654 4542 3445688876432 2
Q ss_pred cCcccEEEEcCCCCCCCCCcc---------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642 114 KRKFDRIIFNFPHAGFHGKEE---------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR 183 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd---------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa 183 (421)
...||+|+.|=|..|. |.-. ....+.....+-...+.+|..+|++||.+..+.|+-.|- +...|..+.+
T Consensus 305 ~~~fD~Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 305 QDTFDRILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred hccCCEEEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 3579999999999886 3211 122344445566788999999999999999999987653 6778877544
Q ss_pred -hCCcEEEEE
Q 014642 184 -KHSLLRLDC 192 (421)
Q Consensus 184 -~aGL~L~~~ 192 (421)
+.++.+...
T Consensus 384 ~~~~~~~~~~ 393 (431)
T PRK14903 384 EQKDAEVIDI 393 (431)
T ss_pred hCCCcEEecc
Confidence 557776543
No 19
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.74 E-value=0.034 Score=53.24 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=82.4
Q ss_pred ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
...++++||-||=|.=-.+..+++..+...+|++.-.. ++..+ .++.|++.+.-..++++. -|+..|. +.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~---~A~~~~~~~g~~~v~~~~-~d~~~l~----~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLA---KARANARKAGYTNVEFRL-GEIEALP----VA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHH---HHHHHHHHcCCCCEEEEE-cchhhCC----CC
Confidence 45678899999999866666677776654567776554 22332 255555443322344333 3555543 33
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--CCC-C-----------------c
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--TTA-P-----------------F 173 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~-P-----------------Y 173 (421)
...||.|+.|.-..-. .+ ....|+.+..+|+|+|.+.++=. .+. | +
T Consensus 144 ~~~fD~Vi~~~v~~~~---~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 144 DNSVDVIISNCVINLS---PD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred CCceeEEEEcCcccCC---CC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 5689999998532211 11 13567778899999999988521 111 1 1
Q ss_pred CcccHHHHHHhCCcEEEEEeeCC
Q 014642 174 CKWHIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 174 ~sWnI~~LAa~aGL~L~~~~~F~ 196 (421)
...++.++.+++|+..++.....
T Consensus 210 ~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred CHHHHHHHHHHCCCCceEEEecc
Confidence 22245566677788776654443
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.73 E-value=0.049 Score=50.26 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=80.8
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD 118 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD 118 (421)
++||=||=|.=.++..|++.++ ..++++..+ |.+.+. .+..++....-.+-.-+...|+.+.. + ...||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~-s~~~~~----~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTI-SPEQAE----VGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEEC-CHHHHH----HHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence 3789999998888999998874 346666555 333221 24444433211111122335665431 1 24799
Q ss_pred EEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-------------CcccHHHHHH
Q 014642 119 RIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-------------CKWHIEELAR 183 (421)
Q Consensus 119 rIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-------------~sWnI~~LAa 183 (421)
.|+-+ +-|++ + ...+|+++..+|+|+|.+.++-...... +.=.+..+.+
T Consensus 70 ~I~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~ 133 (224)
T smart00828 70 LVFGFEVIHHIK-------------D---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLA 133 (224)
T ss_pred EeehHHHHHhCC-------------C---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHH
Confidence 99854 23332 1 3589999999999999988764211111 1113456788
Q ss_pred hCCcEEEEEeeCCCC
Q 014642 184 KHSLLRLDCVQFRKE 198 (421)
Q Consensus 184 ~aGL~L~~~~~F~~~ 198 (421)
++||.+.+...+..+
T Consensus 134 ~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 134 RNNLRVVEGVDASLE 148 (224)
T ss_pred HCCCeEEEeEECcHh
Confidence 899999999888654
No 21
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.72 E-value=0.041 Score=52.21 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+..+||=+|-|.=.++.+|++... ...++++-.+ ....+ .++.|++......+.++. .|+... +...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis--~~~l~---~a~~n~~~~~~~~i~~~~-~d~~~~-----~~~~ 174 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDIS--PEALA---VARRNAKHGLGARVEFLQ-GDWFEP-----LPGG 174 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHhCCCCcEEEEE-ccccCc-----CCCC
Confidence 3456899999999999999998863 4466666443 22222 356676611122344433 355321 2246
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR 183 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa 183 (421)
+||.||.|.|.............++. .-.++..|++.|..+|+++|.+.+.+-. ...-++..+.+
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~ 251 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLA 251 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHH
Confidence 89999999998874211101112221 2355788999999999999999986622 12234777777
Q ss_pred hCCcEEEEE
Q 014642 184 KHSLLRLDC 192 (421)
Q Consensus 184 ~aGL~L~~~ 192 (421)
..|+.-+..
T Consensus 252 ~~gf~~v~~ 260 (275)
T PRK09328 252 AAGFADVET 260 (275)
T ss_pred hCCCceeEE
Confidence 888864444
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=96.69 E-value=0.062 Score=50.42 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=85.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++.+||-+|=|.=.++..|++. + ..++++.-.+. + ..+ -++.|++... ..+.++ .-|+.+. +...
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~-~-~l~---~a~~n~~~~~-~~~~~~-~~d~~~~-----~~~~ 100 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR-R-AVR---SARLNALLAG-VDVDVR-RGDWARA-----VEFR 100 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH-H-HHH---HHHHHHHHhC-CeeEEE-ECchhhh-----ccCC
Confidence 45679999999998888888875 3 34676665553 2 222 2455664332 123333 3455432 2346
Q ss_pred cccEEEEcCCCCCCCCC--cccHHH----H-HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642 116 KFDRIIFNFPHAGFHGK--EEDDEV----I-RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL 188 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~Gk--Ed~~~~----I-~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~ 188 (421)
.||.||.|-|....... .+.... . .....++..|++.|..+|+++|.+.+.+.+-. +.-++..+.+..|+.
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLD 178 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCC
Confidence 89999999776542110 000000 0 01345678999999999999999998766542 223566677777875
Q ss_pred EEEE
Q 014642 189 RLDC 192 (421)
Q Consensus 189 L~~~ 192 (421)
+...
T Consensus 179 ~~~~ 182 (223)
T PRK14967 179 AEVV 182 (223)
T ss_pred eEEE
Confidence 5444
No 23
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.69 E-value=0.051 Score=56.34 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=95.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=+|=|-=+.++.|++..+. ..|+| .|-.....+ .+++|++.+.- .++ +...|++++... +...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a--~D~s~~~l~---~~~~n~~~~g~-~~~-~~~~D~~~~~~~--~~~~ 312 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQ-AQVVA--LDIDAQRLE---RVRENLQRLGL-KAT-VIVGDARDPAQW--WDGQ 312 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCC-CEEEE--EeCCHHHHH---HHHHHHHHcCC-CeE-EEEcCcccchhh--cccC
Confidence 45789999999999999999887632 35554 453333332 35566654321 233 445688876432 2346
Q ss_pred cccEEEEcCCCCCCCCC----cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCcccHHHHHHh-
Q 014642 116 KFDRIIFNFPHAGFHGK----EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCKWHIEELARK- 184 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~Gk----Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnI~~LAa~- 184 (421)
.||+|+.|=|..|. |. .+ ....+.....+...++..|..+|+|||.+.++.|.-.| -+.-+|..+.++
T Consensus 313 ~fD~Vl~D~Pcs~~-G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~ 391 (427)
T PRK10901 313 PFDRILLDAPCSAT-GVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH 391 (427)
T ss_pred CCCEEEECCCCCcc-cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 79999999998874 21 00 12344445567789999999999999999998886654 355667665444
Q ss_pred CCcEEEE
Q 014642 185 HSLLRLD 191 (421)
Q Consensus 185 aGL~L~~ 191 (421)
.++.+..
T Consensus 392 ~~~~~~~ 398 (427)
T PRK10901 392 PDAELLD 398 (427)
T ss_pred CCCEEec
Confidence 4676654
No 24
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.69 E-value=0.0093 Score=61.72 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=86.9
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeecccCCcCcccccccC
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG---ASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G---v~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+||=+|=|+=-.+..|++.+. ...|+++-.. +..+ + -++.|++.....+ +.++ +.++-.. +...
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S-~~Av-~---~A~~N~~~n~~~~~~~v~~~----~~D~l~~--~~~~ 297 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDES-PMAV-A---SSRLNVETNMPEALDRCEFM----INNALSG--VEPF 297 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCcccCceEEEE----Ecccccc--CCCC
Confidence 5899999999999999998763 4466665443 2222 2 3566765442211 2332 2222111 2345
Q ss_pred cccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc------cHHHHHHhCCcE
Q 014642 116 KFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW------HIEELARKHSLL 188 (421)
Q Consensus 116 ~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nI~~LAa~aGL~ 188 (421)
+||.|+.|-| |.|.. . ...+...+|+.|...|+++|++.|-.....+|..| +++.+|+..+|+
T Consensus 298 ~fDlIlsNPPfh~~~~-~---------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf~ 367 (378)
T PRK15001 298 RFNAVLCNPPFHQQHA-L---------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFV 367 (378)
T ss_pred CEEEEEECcCcccCcc-C---------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCEE
Confidence 7999999999 66531 1 22345789999999999999999987665666433 445567777888
Q ss_pred EEEEee
Q 014642 189 RLDCVQ 194 (421)
Q Consensus 189 L~~~~~ 194 (421)
+.+.++
T Consensus 368 vl~a~k 373 (378)
T PRK15001 368 VLKAVK 373 (378)
T ss_pred EEEEEe
Confidence 877754
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.65 E-value=0.083 Score=47.65 Aligned_cols=138 Identities=18% Similarity=0.187 Sum_probs=84.8
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...+||=+|=|+=.++.+|++.. + .+++.-++ .+..+ .++.|++... ..+.+ ...|+.+.. ...
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~~ 82 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDIN--PFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RGK 82 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECC--HHHHH---HHHHHHHHcC-CceEE-EEccccccc------CCc
Confidence 34689999999999999998763 2 56666444 33322 3556664321 22333 334554421 247
Q ss_pred ccEEEEcCCCCCCCCCc--ccHHHHH-----HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642 117 FDRIIFNFPHAGFHGKE--EDDEVIR-----MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR 189 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkE--d~~~~I~-----~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L 189 (421)
||.|+.|-|+.-..+.. ++..+.. ....++..|+..+..+|+++|.+.+...... +.=.+.++.++.|+.+
T Consensus 83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRY 160 (179)
T ss_pred ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeE
Confidence 99999999986432111 1111111 2356789999999999999999888664332 1234566677778776
Q ss_pred EEE
Q 014642 190 LDC 192 (421)
Q Consensus 190 ~~~ 192 (421)
...
T Consensus 161 ~~~ 163 (179)
T TIGR00537 161 EIV 163 (179)
T ss_pred EEE
Confidence 644
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.64 E-value=0.034 Score=55.48 Aligned_cols=134 Identities=19% Similarity=0.117 Sum_probs=85.8
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..++++||=+|=|.=+|+..++.. +..+++.-.| ..+.+ .+..|++...-.++. +..-|++++.. ..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~--~~~~~---~a~~nl~~~g~~~i~-~~~~D~~~l~~----~~ 246 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDID--WKMVA---GARINLEHYGIEDFF-VKRGDATKLPL----SS 246 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCC--HHHHH---HHHHHHHHhCCCCCe-EEecchhcCCc----cc
Confidence 456678887655555565554432 3467766444 33332 366777654333333 45668888743 24
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC 192 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~ 192 (421)
..||.||.|-|-....+... .....|...++..+.++|+++|.+.+.+.+.. ++.++++.+|+ +...
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~-----~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAG-----DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR 313 (329)
T ss_pred CCCCEEEECCCCcCcccccC-----CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence 68999999988643222110 12346788999999999999999988876543 45678999999 6554
No 27
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.61 E-value=0.06 Score=56.14 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=96.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk 113 (421)
.++++||=+|-|-=.+|..|++..+....|+ +.|..+...+ .+++|++. .|+. ....-|+.++. .
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~--avD~s~~~l~---~~~~~~~~---~g~~~v~~~~~Da~~~~-----~ 315 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQIT--AVDRYPQKLE---KIRSHASA---LGITIIETIEGDARSFS-----P 315 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEE--EEECCHHHHH---HHHHHHHH---hCCCeEEEEeCcccccc-----c
Confidence 3567999999999889999988765444454 4564444433 35566654 3542 34456776653 2
Q ss_pred cCcccEEEEcCCCCCCCCC----c-----ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642 114 KRKFDRIIFNFPHAGFHGK----E-----EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR 183 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~Gk----E-----d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa 183 (421)
...||+|+.+=|..|. |. . .....+.....+-..++.+|..+|++||.+..+.|+-.|- |..+|..+.+
T Consensus 316 ~~~fD~Vl~D~Pcsg~-g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 316 EEQPDAILLDAPCTGT-GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCCCEEEEcCCCCCc-chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 3579999999999985 31 1 1223444445566789999999999999999999988765 5788887655
Q ss_pred hC-CcEEEE
Q 014642 184 KH-SLLRLD 191 (421)
Q Consensus 184 ~a-GL~L~~ 191 (421)
.+ ++.+..
T Consensus 395 ~~~~~~~~~ 403 (445)
T PRK14904 395 RHPEFSAEP 403 (445)
T ss_pred hCCCCEEec
Confidence 44 566543
No 28
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.52 E-value=0.011 Score=54.94 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=89.4
Q ss_pred ceeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeeccc-CCc
Q 014642 29 EKWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDA-TEM 106 (421)
Q Consensus 29 ~K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDA-TkL 106 (421)
..|...|.. ..+||=+|=|.=.++..|++.+. ..+++|.-.+. +..+ .+..|++...-.++.++ .-|+ ..+
T Consensus 31 ~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~--~~i~---~a~~~~~~~~~~~v~~~-~~d~~~~l 103 (202)
T PRK00121 31 LDWAELFGNDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE--PGVG---KALKKIEEEGLTNLRLL-CGDAVEVL 103 (202)
T ss_pred CCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech--HHHH---HHHHHHHHcCCCCEEEE-ecCHHHHH
Confidence 455555555 56899999999999999988763 34677766553 2222 24445543322234443 3476 554
Q ss_pred CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642 107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS 186 (421)
Q Consensus 107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG 186 (421)
... +....||.|+.|||........+ ..+.+...|++.+..+|+|+|.+.|+...- .+ ...+.+...+.|
T Consensus 104 ~~~--~~~~~~D~V~~~~~~p~~~~~~~------~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~-~~-~~~~~~~~~~~g 173 (202)
T PRK00121 104 LDM--FPDGSLDRIYLNFPDPWPKKRHH------KRRLVQPEFLALYARKLKPGGEIHFATDWE-GY-AEYMLEVLSAEG 173 (202)
T ss_pred HHH--cCccccceEEEECCCCCCCcccc------ccccCCHHHHHHHHHHcCCCCEEEEEcCCH-HH-HHHHHHHHHhCc
Confidence 321 33567999999998543211111 122345789999999999999999876432 22 234556666677
Q ss_pred cEEE
Q 014642 187 LLRL 190 (421)
Q Consensus 187 L~L~ 190 (421)
+...
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 7554
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.48 E-value=0.059 Score=53.13 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
..+||=+|=|.=.++.+|++... ..+++|. |-..+..+ -++.|++...-. .+.++. -|+.+ .+...+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~av--Dis~~al~---~A~~n~~~~~~~~~i~~~~-~D~~~-----~~~~~~ 189 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAV--DISPDALA---VAEINIERHGLEDRVTLIQ-SDLFA-----ALPGRK 189 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCCCCcEEEEE-Cchhh-----ccCCCC
Confidence 46899999999999999998763 3456555 53233332 356666543211 133333 35532 123457
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH 185 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a 185 (421)
||.||.|=|-+...........++ .--.++..+++.|.++|+++|.+.+.+-..+ . .+.++...+
T Consensus 190 fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~---~-~v~~~~~~~ 265 (284)
T TIGR03533 190 YDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM---E-ALEEAYPDV 265 (284)
T ss_pred ccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHHhC
Confidence 999999998876321111111121 0124578899999999999999998875322 1 466666666
Q ss_pred CcE
Q 014642 186 SLL 188 (421)
Q Consensus 186 GL~ 188 (421)
|+.
T Consensus 266 ~~~ 268 (284)
T TIGR03533 266 PFT 268 (284)
T ss_pred CCc
Confidence 643
No 30
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.32 E-value=0.053 Score=40.90 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=65.7
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
+||-+|.|.-.++..+++ . ....+++...+... ... +..+........+++ ...|+.+... .....||.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVA--LEL---ARKAAAALLADNVEV-LKGDAEELPP---EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHH--HHH---HHHHHhcccccceEE-EEcChhhhcc---ccCCceEE
Confidence 578899999999999888 2 35577777665322 111 111111111112333 4456665543 23467999
Q ss_pred EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
|+.|.|.-.. ......+++.+..+|+++|.+.++
T Consensus 70 i~~~~~~~~~-------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL-------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh-------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999986652 344667888888999999999887
No 31
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.28 E-value=0.043 Score=51.72 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=85.7
Q ss_pred eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc---
Q 014642 33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH--- 109 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~--- 109 (421)
..+.++++||=+|=|.=+|+..|++..+....|+|.-++.. . ...|+.++.+ |++++...
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~------------~~~~v~~i~~-D~~~~~~~~~i 109 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----D------------PIVGVDFLQG-DFRDELVLKAL 109 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----c------------CCCCcEEEec-CCCChHHHHHH
Confidence 34577889999999999999999998765567888877651 0 1136777766 88885411
Q ss_pred -cccccCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642 110 -SELSKRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC 174 (421)
Q Consensus 110 -~~Lk~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~ 174 (421)
..+....||.|+-|. ||... ... ..+..+-.++...++.+..+|++||.+.|.+..+..+.
T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g--~~~--~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~ 172 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAPNMSG--TPA--VDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD 172 (209)
T ss_pred HHHhCCCCCCEEecCCCCccCC--ChH--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence 113457899999998 88853 211 12233344567899999999999999999888776433
No 32
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.23 E-value=0.14 Score=53.07 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-E--eecccCCcCccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-I--HGVDATEMKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-l--hgVDATkL~~~~~L 112 (421)
.++++||=+|=|-=.+|..+++..+ ...|+|.-.+ +...+ .+++|++. .|+.+ + ..-|+..+... .
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~--~~~l~---~~~~n~~r---~g~~~~v~~~~~d~~~~~~~--~ 305 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-QAQVVALDIH--EHRLK---RVYENLKR---LGLTIKAETKDGDGRGPSQW--A 305 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCC--HHHHH---HHHHHHHH---cCCCeEEEEecccccccccc--c
Confidence 4568999999999999999998775 4456665443 32222 35566654 45542 1 23344433221 2
Q ss_pred ccCcccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642 113 SKRKFDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR 183 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa 183 (421)
....||+|+-+=|..|.+. + .+ ....+..-..|-..++.+|..+|+|||.+.++.|+-.|- |.+.|..+-+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 3467999999999998521 1 11 223455555677889999999999999999999987664 6778877554
Q ss_pred hC-CcEE
Q 014642 184 KH-SLLR 189 (421)
Q Consensus 184 ~a-GL~L 189 (421)
+. ++.+
T Consensus 386 ~~~~~~~ 392 (426)
T TIGR00563 386 EHPDFPF 392 (426)
T ss_pred hCCCCee
Confidence 43 5543
No 33
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.19 E-value=0.047 Score=49.69 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=75.8
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc----
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS---- 110 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~---- 110 (421)
..++++||-+|=|.=.++..+++.......|+|.-.+.. . +..++. ++..|+++.....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------------~~~~i~-~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------------PIENVD-FIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------------cCCCce-EEEeeCCChhHHHHHHH
Confidence 356889999999999999999988754557888766542 1 123555 3445776543110
Q ss_pred ccccCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 111 ELSKRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 111 ~Lk~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.+....||.|+.|. ||.. |.... ..-...+++..++..+..+|+++|.+.|...+.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~--g~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNIS--GYWDI--DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HhCCCCccEEEcCCCCCCC--CCccc--cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 12356799999987 5542 11111 111234567889999999999999999976544
No 34
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.17 E-value=0.069 Score=55.49 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=95.0
Q ss_pred cccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeeccc
Q 014642 26 KEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK--LGASIIHGVDA 103 (421)
Q Consensus 26 ~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--~Gv~VlhgVDA 103 (421)
.++..|+..+..+.+||=+|=|.=+|+++.+.. .+..|++ .|..+...+ -+++|++...- ..+.++ .-|+
T Consensus 209 r~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~--VD~s~~al~---~a~~N~~~Ngl~~~~v~~i-~~D~ 280 (396)
T PRK15128 209 RDSRLATRRYVENKRVLNCFSYTGGFAVSALMG--GCSQVVS--VDTSQEALD---IARQNVELNKLDLSKAEFV-RDDV 280 (396)
T ss_pred HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEE--EECCHHHHH---HHHHHHHHcCCCCCcEEEE-EccH
Confidence 446677777888889998888887887776542 2445655 454333333 36677655321 123333 3466
Q ss_pred CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc----ccHH
Q 014642 104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK----WHIE 179 (421)
Q Consensus 104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnI~ 179 (421)
-+.-........+||.||.|=|-... +++ .+..-..-...++..|.++|+++|.+...-|.+. .+. .-|.
T Consensus 281 ~~~l~~~~~~~~~fDlVilDPP~f~~-~k~----~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~ 354 (396)
T PRK15128 281 FKLLRTYRDRGEKFDVIVMDPPKFVE-NKS----QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIA 354 (396)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCC-ChH----HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHH
Confidence 55322111124689999999997542 222 1221122255667789999999999998888763 222 2344
Q ss_pred HHHHhCCc--EEEEEeeCCCCCCC
Q 014642 180 ELARKHSL--LRLDCVQFRKEDYP 201 (421)
Q Consensus 180 ~LAa~aGL--~L~~~~~F~~~~YP 201 (421)
+.|.++|- .+++. .-++.|+|
T Consensus 355 ~aa~~~~~~~~~l~~-~~~~~DhP 377 (396)
T PRK15128 355 DAAIDAGRDVQFIEQ-FRQAADHP 377 (396)
T ss_pred HHHHHcCCeEEEEEE-cCCCCCCC
Confidence 56666654 44443 23566666
No 35
>PRK03612 spermidine synthase; Provisional
Probab=96.15 E-value=0.033 Score=59.52 Aligned_cols=135 Identities=20% Similarity=0.289 Sum_probs=85.9
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhH-HHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEA-RSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a-~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
+.++||.+|=|+-..+..++++ +....|++--.|.+ -++.++++.. .-|-..+..-.++++.+ |+.+.-.. ..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---LA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---CC
Confidence 4568999999999999998874 33357888777742 1222221110 00111233345677665 77763221 13
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc----CcccHHHHHHhCCc
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF----CKWHIEELARKHSL 187 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnI~~LAa~aGL 187 (421)
++||.||-|+|+....+ ..+..-..||+.+.+.|+|+|.+.+... .|+ .-|.+.+..++.|+
T Consensus 372 ~~fDvIi~D~~~~~~~~---------~~~L~t~ef~~~~~~~L~pgG~lv~~~~--~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPA---------LGKLYSVEFYRLLKRRLAPDGLLVVQST--SPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCcc---------hhccchHHHHHHHHHhcCCCeEEEEecC--CcccchHHHHHHHHHHHHcCC
Confidence 68999999999764211 1222236799999999999999887653 343 34788888888888
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.11 E-value=0.049 Score=53.80 Aligned_cols=130 Identities=24% Similarity=0.384 Sum_probs=78.1
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeecccCCcCccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG----ASIIHGVDATEMKEHS 110 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATkL~~~~ 110 (421)
-.++++||=+|=|-=+++.-+|+.+| .+|++-++. .++.. .+.+ .+++.| +.|.. .|..++..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS-~~Q~~----~a~~---~~~~~gl~~~v~v~~-~D~~~~~~-- 126 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLS-EEQAE----YARE---RIREAGLEDRVEVRL-QDYRDLPG-- 126 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHH---HHHCSTSSSTEEEEE-S-GGG-----
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECC-HHHHH----HHHH---HHHhcCCCCceEEEE-eeccccCC--
Confidence 45688999999999999999999984 567777763 33221 2322 344555 44433 46655432
Q ss_pred ccccCcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE---ecCCC--------------
Q 014642 111 ELSKRKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS---HKTTA-------------- 171 (421)
Q Consensus 111 ~Lk~~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT---Lk~g~-------------- 171 (421)
+||+||-- |-|+|. + | +..||+.+..+|+|+|.+.|. ..+..
T Consensus 127 -----~fD~IvSi~~~Ehvg~---~--------~---~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k 187 (273)
T PF02353_consen 127 -----KFDRIVSIEMFEHVGR---K--------N---YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK 187 (273)
T ss_dssp -----S-SEEEEESEGGGTCG---G--------G---HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH
T ss_pred -----CCCEEEEEechhhcCh---h--------H---HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE
Confidence 89999876 899984 1 1 458999999999999997543 32210
Q ss_pred ---C----cCcccHHHHHHhCCcEEEEEeeCC
Q 014642 172 ---P----FCKWHIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 172 ---P----Y~sWnI~~LAa~aGL~L~~~~~F~ 196 (421)
| -+.-.|...+++.||.+.....+.
T Consensus 188 yiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 188 YIFPGGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HTSTTS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred eeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 1 022345566778889888776653
No 37
>PRK01581 speE spermidine synthase; Validated
Probab=96.07 E-value=0.046 Score=56.91 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=89.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHH-HHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEAR-SNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~-~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
+..+||++|=|+-+.++.++++ ....+|++--+|.+ -++.++|+.-. -|-..+..-.++|+++ ||.+.-.. ..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~---~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS---PS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh---cC
Confidence 3469999999998877777764 34567988888853 23334443211 1111223334555443 55542111 23
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc----ccHHHHHHhCCcEEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK----WHIEELARKHSLLRL 190 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnI~~LAa~aGL~L~ 190 (421)
.+||.||-++|..-... .....-..||+.+...|+|+|-+.+. .+.|... |.+...-+++++...
T Consensus 225 ~~YDVIIvDl~DP~~~~---------~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 225 SLYDVIIIDFPDPATEL---------LSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred CCccEEEEcCCCccccc---------hhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHhCCceE
Confidence 67999999998643110 12333478999999999999987665 3344433 888888888888777
Q ss_pred EEeeCC
Q 014642 191 DCVQFR 196 (421)
Q Consensus 191 ~~~~F~ 196 (421)
.-.-+-
T Consensus 294 ~y~t~v 299 (374)
T PRK01581 294 SYHTIV 299 (374)
T ss_pred EEEEec
Confidence 555553
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.98 E-value=0.048 Score=44.38 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
++.+||=+|=|.=+++..|++.+. +.+++|.-++ +++.+ -+++|+.+.... .++ ++.-|+ ..... ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~i~-~~~~d~-~~~~~---~~~ 69 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDIS--PEMLE---IARERAAEEGLSDRIT-FVQGDA-EFDPD---FLE 69 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESS--HHHHH---HHHHHHHHTTTTTTEE-EEESCC-HGGTT---TSS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCC--HHHHH---HHHHHHHhcCCCCCeE-EEECcc-ccCcc---cCC
Confidence 467999999999999999999664 5567776654 33332 355666442222 333 444566 22111 235
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
.||.|+.+. .+...- + +..-...+++.+.++|+|+|.+.|+-
T Consensus 70 ~~D~v~~~~-~~~~~~-------~--~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 70 PFDLVICSG-FTLHFL-------L--PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CEEEEEECS-GSGGGC-------C--HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECC-Cccccc-------c--chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 699999998 432100 0 11334567888999999999999875
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.86 E-value=0.062 Score=48.77 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+..+||=||=|.=+++..+++... ..++++ .|......+ .+++|++.+.-.+++++.+ |+.. .+ ..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~--vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~-~~ 96 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTA--IERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL-PG 96 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEE--EECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-Cc
Confidence 4677999999999999999998753 345555 453333332 3566776554334665543 4421 12 25
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF 195 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F 195 (421)
.||.|+.+... + .+..++..+..+|+++|.+.+..... .+.=++..+.++.|+...+....
T Consensus 97 ~~D~v~~~~~~----~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 97 KADAIFIGGSG----G-------------NLTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CCCEEEECCCc----c-------------CHHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCCCcceEEEE
Confidence 79999987431 1 13457788999999999998764321 11124566888889876665444
Q ss_pred C
Q 014642 196 R 196 (421)
Q Consensus 196 ~ 196 (421)
.
T Consensus 158 ~ 158 (187)
T PRK08287 158 Q 158 (187)
T ss_pred E
Confidence 3
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.84 E-value=0.25 Score=40.47 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=67.2
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
.+.+||=+|-|.=.++..|++..+ +.++++.-+. +...+ .++.|++.+.-..+.+ +.-|+..... ....+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~ 88 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERN--PEALR---LIERNARRFGVSNIVI-VEGDAPEALE---DSLPE 88 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCC--HHHHH---HHHHHHHHhCCCceEE-EeccccccCh---hhcCC
Confidence 456999999999999999998864 3466655543 22222 3555666553323433 3344443211 11257
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
||.|+...+. . .+..+++.+.++|+++|.+.++.-
T Consensus 89 ~D~v~~~~~~------~-----------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 89 PDRVFIGGSG------G-----------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCEEEECCcc------h-----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 9999985421 0 134889999999999999998763
No 41
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.83 E-value=0.14 Score=54.05 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=88.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+..+||=+|=|.=.++.+|++... ..+++|+-.+ ++..+ .+++|++.+. ..++++. -|..+.. . ....
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS--~~ALe---~AreNa~~~g-~rV~fi~-gDl~e~~--l-~~~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-DAFVRASDIS--PPALE---TARKNAADLG-ARVEFAH-GSWFDTD--M-PSEG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CcEEEEE-cchhccc--c-ccCC
Confidence 3456899999999889999987763 4467666444 33332 3667776542 1233332 3443321 1 1234
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK 184 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~ 184 (421)
+||.||.|=|.+....++.....++ .-.+.++.++..+...|+++|.+.+.+-.. ..-.++++.++
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---Q~e~V~~ll~~ 395 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---QGAAVRGVLAE 395 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---HHHHHHHHHHH
Confidence 7999999999987421111111111 112346788999999999999987766332 23368888888
Q ss_pred CCcEEEEE
Q 014642 185 HSLLRLDC 192 (421)
Q Consensus 185 aGL~L~~~ 192 (421)
.|+..++.
T Consensus 396 ~Gf~~v~v 403 (423)
T PRK14966 396 NGFSGVET 403 (423)
T ss_pred CCCcEEEE
Confidence 88876555
No 42
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.78 E-value=0.074 Score=55.62 Aligned_cols=133 Identities=15% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
+..+|=||=|+=.|++.||+.+ ...+++|.-.... +.. .+..++....-.++.++ ..||..+-.. +....+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~--~i~---~a~~ka~~~gL~NV~~i-~~DA~~ll~~--~~~~s~ 193 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTP--SIE---QVLKQIELLNLKNLLII-NYDARLLLEL--LPSNSV 193 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHH--HHH---HHHHHHHHcCCCcEEEE-ECCHHHhhhh--CCCCce
Confidence 4579999999999999999987 4568888766532 121 13333332211234444 6788876543 456889
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHh-HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMH-MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR 189 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~n-r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L 189 (421)
|+|+.|||-.-.+ + .| |.....|+..+..+|++||.|++.-..- +|-.|-++.+.+...+.+
T Consensus 194 D~I~lnFPdPW~K--k-------rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~-~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 194 EKIFVHFPVPWDK--K-------PHRRVISEDFLNEALRVLKPGGTLELRTDSE-LYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eEEEEeCCCCccc--c-------chhhccHHHHHHHHHHHcCCCcEEEEEEECH-HHHHHHHHHHHhCCCcee
Confidence 9999999855432 1 23 3346789999999999999999987664 588888887766655554
No 43
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.64 E-value=0.059 Score=52.41 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeecccCCcCcccccc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK----KLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr----~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
..+||.||-|+-+++..|+++. +..++++...|.. +.+ .+++++..+. ...++++. -|+.+.-.. .
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~--vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~---~ 142 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEK--VIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD---T 142 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHH--HHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh---C
Confidence 4599999999999999998764 3457888877742 222 1333333332 22344443 454332111 1
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
.++||.||.+.|..-. .. .......||+.+..+|+++|.+.+.
T Consensus 143 ~~~yDvIi~D~~~~~~--~~--------~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVG--PA--------ETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCC--cc--------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence 3689999999875321 10 1123479999999999999998876
No 44
>PRK04457 spermidine synthase; Provisional
Probab=95.60 E-value=0.028 Score=54.81 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
...+||.||=|.-++++.|++.++ ...|++--+|. ++.+ -++++...-. ...++|+.+ ||.+.-.. ...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp--~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~~ 135 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP--QVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HRH 135 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH--HHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CCC
Confidence 356899999999999999998874 45676666653 2332 1333332211 124667665 77654221 135
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP 172 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 172 (421)
+||.|+.|.-+... .. .......||+.|..+|+|+|.+.|.+-...+
T Consensus 136 ~yD~I~~D~~~~~~--~~--------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 136 STDVILVDGFDGEG--II--------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCEEEEeCCCCCC--Cc--------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 79999998543221 10 0111369999999999999999998765443
No 45
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.50 E-value=0.14 Score=54.80 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
..+||=+|=|.=.++.+|++.+. ...++|+-.+ .+.+ + -++.|+....-. .+.+ ...|+.. .+....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis-~~al-~---~A~~N~~~~~l~~~v~~-~~~D~~~-----~~~~~~ 206 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDIS-LDAI-E---VAKSNAIKYEVTDRIQI-IHSNWFE-----NIEKQK 206 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECC-HHHH-H---HHHHHHHHcCCccceee-eecchhh-----hCcCCC
Confidence 35899999999999999988764 3467666443 3333 2 356676443211 1332 3334422 122457
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK 184 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~ 184 (421)
||.||.|=|.+...-.......+..+ ...+..++..|..+|+++|.+.+.+-.. ....|..+.++
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~ 283 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLD 283 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHh
Confidence 99999999998742111111111111 2456778899999999999998876433 34467778888
Q ss_pred CCcEEEEE
Q 014642 185 HSLLRLDC 192 (421)
Q Consensus 185 aGL~L~~~ 192 (421)
.|+..+..
T Consensus 284 ~g~~~~~~ 291 (506)
T PRK01544 284 HGYNIESV 291 (506)
T ss_pred cCCCceEE
Confidence 88865544
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=95.41 E-value=0.51 Score=47.63 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EE-EeecccCCcCccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SI-IHGVDATEMKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~V-lhgVDATkL~~~~~L 112 (421)
.+..+||=||=|.=.++..|++.++ .+|++.-++ .+.+ + .+..+++ +.|. .| +..-|+..+. +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s-~~~i-~---~a~~~~~---~~g~~~~v~~~~~D~~~~~----~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLS-PVQA-A---RANALAA---AQGLSDKVSFQVADALNQP----F 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECC-HHHH-H---HHHHHHH---hcCCCCceEEEEcCcccCC----C
Confidence 4567999999999999999998873 467766543 2222 2 1333322 2232 22 2334777653 3
Q ss_pred ccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe-cC--CCC----c----------
Q 014642 113 SKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH-KT--TAP----F---------- 173 (421)
Q Consensus 113 k~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL-k~--g~P----Y---------- 173 (421)
....||.|+.++- |... ...+|+.+..+|+|||.+.|+- +. ..| .
T Consensus 183 ~~~~FD~V~s~~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred CCCCccEEEECCchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 4578999998643 3321 2368888999999999988853 11 111 0
Q ss_pred -------Ccc----cHHHHHHhCCcEEEEEeeCCCCCCCCC
Q 014642 174 -------CKW----HIEELARKHSLLRLDCVQFRKEDYPGY 203 (421)
Q Consensus 174 -------~sW----nI~~LAa~aGL~L~~~~~F~~~~YPGY 203 (421)
..| +++++++++||..++..++....-|-|
T Consensus 247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~ 287 (340)
T PLN02244 247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFW 287 (340)
T ss_pred HHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence 112 455678888998888766554433433
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.39 E-value=0.36 Score=44.12 Aligned_cols=107 Identities=18% Similarity=0.315 Sum_probs=65.3
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...+||-||-|.=.++..|++..+...+++++-.+ +.+.+ .+++++......+...+...|+.++. +....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 121 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS 121 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence 45799999999999999999887433455555543 22322 23344332111122234446887764 23467
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
||.|+.++=... ..+ +..+++++..+|+++|.|.+.
T Consensus 122 ~D~I~~~~~l~~---~~~-----------~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 122 FDAVTIAFGLRN---VPD-----------IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ccEEEEeccccc---CCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence 999987642111 111 346788899999999987653
No 48
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.39 E-value=0.29 Score=45.57 Aligned_cols=127 Identities=18% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
++.+||-||-|.=+++..|++. + .+++++-.+ ....+ .+..++..... .+.+ +..|+..+... ....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s--~~~~~---~a~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~ 114 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-G--ADVTGIDAS--EENIE---VARLHALESGL-KIDY-RQTTAEELAAE---HPGQ 114 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCC--HHHHH---HHHHHHHHcCC-ceEE-EecCHHHhhhh---cCCC
Confidence 4678999999988888888875 2 457666544 22222 23334332211 2233 34555554321 2368
Q ss_pred ccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC----------------------
Q 014642 117 FDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP---------------------- 172 (421)
Q Consensus 117 FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P---------------------- 172 (421)
||.||.++ .|.+. ...+++++..+|+++|.+.|+.....+
T Consensus 115 fD~Ii~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (233)
T PRK05134 115 FDVVTCMEMLEHVPD----------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTH 178 (233)
T ss_pred ccEEEEhhHhhccCC----------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccC
Confidence 99999864 33331 135788899999999999988643211
Q ss_pred -----cCcccHHHHHHhCCcEEEEE
Q 014642 173 -----FCKWHIEELARKHSLLRLDC 192 (421)
Q Consensus 173 -----Y~sWnI~~LAa~aGL~L~~~ 192 (421)
++..++.++.+++||.+++.
T Consensus 179 ~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 179 DYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred chhhcCCHHHHHHHHHHCCCeEeee
Confidence 12235777888888888766
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.36 E-value=0.23 Score=45.73 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=81.1
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
..++.+||-+|=|.=++|..+++..+.+.+|+|.-.+ .+..+ .+++|++.+. ...+.++ .-|+.++-.. .
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~--~~~~~---~a~~n~~~~g~~~~v~~~-~~d~~~~l~~---~ 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKD--EKAIN---LTRRNAEKFGVLNNIVLI-KGEAPEILFT---I 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHhCCCCCeEEE-EechhhhHhh---c
Confidence 3466799999999999999999887655566665544 33332 3677777654 2345544 3466543211 1
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC 192 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~ 192 (421)
...||+|+-+. +. + -+..++..+..+|+|+|.|.+...+-. ..=.+....++.|+.....
T Consensus 109 ~~~~D~V~~~~---~~---~-----------~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 109 NEKFDRIFIGG---GS---E-----------KLKEIISASWEIIKKGGRIVIDAILLE--TVNNALSALENIGFNLEIT 168 (198)
T ss_pred CCCCCEEEECC---Cc---c-----------cHHHHHHHHHHHcCCCcEEEEEeecHH--HHHHHHHHHHHcCCCeEEE
Confidence 25799999864 11 1 135688899999999999987554321 1113444556778744333
No 50
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.35 E-value=0.18 Score=50.50 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=81.8
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCcc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
.+||=+|-|.=.++.+|++.+. ..+++|+-.+ .+.+ + .++.|++.+.-. .+.++. -|+.+ .+...+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis-~~al-~---~A~~n~~~~~l~~~i~~~~-~D~~~-----~l~~~~f 202 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDIS-PDAL-A---VAEINIERHGLEDRVTLIE-SDLFA-----ALPGRRY 202 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCC-HHHH-H---HHHHHHHHhCCCCcEEEEE-Cchhh-----hCCCCCc
Confidence 5899999999999999998763 3456665443 2222 2 366776654321 244433 35432 1223579
Q ss_pred cEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS 186 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG 186 (421)
|.||.|=|.++..........++ .--.+...+++.|..+|+++|.+.+.+-..+ . .+.++....+
T Consensus 203 DlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~---~-~~~~~~~~~~ 278 (307)
T PRK11805 203 DLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR---V-HLEEAYPDVP 278 (307)
T ss_pred cEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHhhCC
Confidence 99999988877421111011111 0125678899999999999999998765431 1 2555555555
Q ss_pred cEE
Q 014642 187 LLR 189 (421)
Q Consensus 187 L~L 189 (421)
+..
T Consensus 279 ~~~ 281 (307)
T PRK11805 279 FTW 281 (307)
T ss_pred CEE
Confidence 444
No 51
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.34 E-value=0.72 Score=44.80 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~L 112 (421)
.++.+||=||=|.=.++..|++..+...+|+|.-.. +++.+. ++++....... ++. +..-|+.+|. +
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S--~~ml~~---A~~r~~~~~~~~~~~i~-~~~~d~~~lp----~ 141 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS--SEQLAV---AASRQELKAKSCYKNIE-WIEGDATDLP----F 141 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHH---HHHHhhhhhhccCCCeE-EEEcccccCC----C
Confidence 457899999999888999999887544466655433 333332 22222211111 233 3445777663 4
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
....||.|+.+|=.--. + + ...+++.+..+|+|||.+.|.-.
T Consensus 142 ~~~sfD~V~~~~~l~~~---~--------d---~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 142 DDCYFDAITMGYGLRNV---V--------D---RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCEeEEEEecccccC---C--------C---HHHHHHHHHHHcCcCcEEEEEEC
Confidence 56789999988653321 1 1 24678999999999999877643
No 52
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.29 E-value=0.086 Score=46.09 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
+++.+||=+|=|.=-++..|++..+++.+ .+..|--+++.+. +..+++.+.-..+ -++-.|++++... +. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~~---a~~~~~~~~~~ni-~~~~~d~~~l~~~--~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIEY---AKKRAKELGLDNI-EFIQGDIEDLPQE--LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHHH---HHHHHHHTTSTTE-EEEESBTTCGCGC--SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHHH---hhccccccccccc-ceEEeehhccccc--cC-C
Confidence 45779999999999999999976555555 4556655555543 4444444333323 4455788887654 33 7
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
.||.|+.+.+.--. . -...+++.+..+|+++|.+.++...
T Consensus 73 ~~D~I~~~~~l~~~---~-----------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHF---P-----------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGT---S-----------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhc---c-----------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 89999999654221 1 1236677899999999999888766
No 53
>PRK04266 fibrillarin; Provisional
Probab=95.27 E-value=0.78 Score=44.20 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=81.5
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..++.+||=+|=|.=.++..|++..+ ...|+|- |..+++.+. ..++.+. ..++.++ --|++.......+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~av--D~~~~ml~~---l~~~a~~--~~nv~~i-~~D~~~~~~~~~l~- 139 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAV--EFAPRPMRE---LLEVAEE--RKNIIPI-LADARKPERYAHVV- 139 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEE--ECCHHHHHH---HHHHhhh--cCCcEEE-ECCCCCcchhhhcc-
Confidence 34678999999998889999998875 3345554 644433331 2222222 1355554 34666532212222
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----CcCcc--cHHHHHHhCCc
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----PFCKW--HIEELARKHSL 187 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----PY~sW--nI~~LAa~aGL 187 (421)
..||.|+-+.+.. ++ ...+++.+..+|+|+|.+.|++.-.. +-..| +..+..+.+||
T Consensus 140 ~~~D~i~~d~~~p--------------~~--~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF 203 (226)
T PRK04266 140 EKVDVIYQDVAQP--------------NQ--AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGF 203 (226)
T ss_pred ccCCEEEECCCCh--------------hH--HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCC
Confidence 4599998554421 00 12357788889999999999855321 11111 13367778899
Q ss_pred EEEEEeeCC
Q 014642 188 LRLDCVQFR 196 (421)
Q Consensus 188 ~L~~~~~F~ 196 (421)
..++...+.
T Consensus 204 ~~i~~~~l~ 212 (226)
T PRK04266 204 EILEVVDLE 212 (226)
T ss_pred eEEEEEcCC
Confidence 999887763
No 54
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.17 E-value=0.22 Score=49.29 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=106.4
Q ss_pred eeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEeecccCCcC
Q 014642 30 KWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT--LKKLGASIIHGVDATEMK 107 (421)
Q Consensus 30 K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~--Lr~~Gv~VlhgVDATkL~ 107 (421)
.|+..-. ..+||=+|=||===++.||+... ...|++--++. ++ |.-|..|++. |++ -+.| +.-|...+.
T Consensus 38 ~~~~~~~-~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~--~~---a~~A~~nv~ln~l~~-ri~v-~~~Di~~~~ 108 (248)
T COG4123 38 AFAPVPK-KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQE--EA---AEMAQRNVALNPLEE-RIQV-IEADIKEFL 108 (248)
T ss_pred hhccccc-CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCH--HH---HHHHHHHHHhCcchh-ceeE-ehhhHHHhh
Confidence 4454444 88999999999999999998864 36788887773 23 3357788876 444 2444 456888887
Q ss_pred cccccccCcccEEEEcCCCCCCCCC--cccHHHHHHhHH--HHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642 108 EHSELSKRKFDRIIFNFPHAGFHGK--EEDDEVIRMHMS--LVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR 183 (421)
Q Consensus 108 ~~~~Lk~~~FDrIIFNFPH~G~~Gk--Ed~~~~I~~nr~--LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa 183 (421)
.+.. ..+||.||.|=|+--.... ++..+.+-.|.. .+..+.+.|+++|+++|.+.+-|.. -..=+|.++.+
T Consensus 109 ~~~~--~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~ 183 (248)
T COG4123 109 KALV--FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLK 183 (248)
T ss_pred hccc--ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHH
Confidence 7643 3479999999999875322 333344444432 3789999999999999999998864 34556788888
Q ss_pred hCCcEEEEEe
Q 014642 184 KHSLLRLDCV 193 (421)
Q Consensus 184 ~aGL~L~~~~ 193 (421)
..+|...+..
T Consensus 184 ~~~~~~k~i~ 193 (248)
T COG4123 184 SYNLEPKRIQ 193 (248)
T ss_pred hcCCCceEEE
Confidence 8777766553
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.11 E-value=0.51 Score=42.71 Aligned_cols=104 Identities=14% Similarity=0.289 Sum_probs=66.2
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
+..+||=+|-|.=.++..+++..+...++++...+ +.+.+ .+.+++. ....+.+ ...|+.++. +....
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~---~~~~~~~--~~~~i~~-~~~d~~~~~----~~~~~ 106 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLE---VAKKKSE--LPLNIEF-IQADAEALP----FEDNS 106 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHH---HHHHHhc--cCCCceE-EecchhcCC----CCCCc
Confidence 56799999999999999999887432355555443 22222 2333433 1123443 347777654 23467
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
||.|+.++-.... .+ +..+++++..+|+++|.+.+.
T Consensus 107 ~D~i~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 107 FDAVTIAFGLRNV---TD-----------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEEEEEeeeeCCc---cc-----------HHHHHHHHHHHcCCCcEEEEE
Confidence 9999987643221 11 346889999999999998764
No 56
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.08 E-value=0.031 Score=52.45 Aligned_cols=149 Identities=18% Similarity=0.314 Sum_probs=93.9
Q ss_pred cceeeeccCCCC-eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc
Q 014642 28 EEKWIMHYSSKH-QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM 106 (421)
Q Consensus 28 ~~K~i~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL 106 (421)
...|-..|.... -+|=||=|+=-|..++|+.+ ...|+|+--.. .....+ +...+....-.++.++ ..||..+
T Consensus 7 ~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~--~~~v~~---a~~~~~~~~l~Nv~~~-~~da~~~ 79 (195)
T PF02390_consen 7 PLDWQEIFGNDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIR--KKRVAK---ALRKAEKRGLKNVRFL-RGDAREL 79 (195)
T ss_dssp TTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES---HHHHHH---HHHHHHHHTTSSEEEE-ES-CTTH
T ss_pred ccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecc--hHHHHH---HHHHHHhhcccceEEE-EccHHHH
Confidence 445666676665 56778988888999999887 46788886543 222221 3333333333355554 4599884
Q ss_pred CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH-hC
Q 014642 107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR-KH 185 (421)
Q Consensus 107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa-~a 185 (421)
-.. .+....+|.|..|||-.=.+-+. .++|-+=..|+.....+|++||+|++.--. .+|-.|-++.+.+ ..
T Consensus 80 l~~-~~~~~~v~~i~i~FPDPWpK~rH------~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-~~y~~~~~~~~~~~~~ 151 (195)
T PF02390_consen 80 LRR-LFPPGSVDRIYINFPDPWPKKRH------HKRRLVNPEFLELLARVLKPGGELYFATDV-EEYAEWMLEQFEESHP 151 (195)
T ss_dssp HHH-HSTTTSEEEEEEES-----SGGG------GGGSTTSHHHHHHHHHHEEEEEEEEEEES--HHHHHHHHHHHHHHST
T ss_pred Hhh-cccCCchheEEEeCCCCCcccch------hhhhcCCchHHHHHHHHcCCCCEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 332 23458899999999998653221 123334467888888999999999887765 4699999999999 47
Q ss_pred CcEEEE
Q 014642 186 SLLRLD 191 (421)
Q Consensus 186 GL~L~~ 191 (421)
++....
T Consensus 152 ~f~~~~ 157 (195)
T PF02390_consen 152 GFENIE 157 (195)
T ss_dssp TEEEE-
T ss_pred CeEEcc
Confidence 888774
No 57
>PRK08317 hypothetical protein; Provisional
Probab=95.07 E-value=0.33 Score=43.98 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=69.7
Q ss_pred ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSEL 112 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~L 112 (421)
...++.+||-+|-|.=.++..+++.+++..+++++..+.. .+. .+..+ ....+..+- ...|++.+. +
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~-~~~----~a~~~---~~~~~~~~~~~~~d~~~~~----~ 83 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA-MLA----LAKER---AAGLGPNVEFVRGDADGLP----F 83 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH-HHH----HHHHH---hhCCCCceEEEecccccCC----C
Confidence 4556789999999999999999998865567888877532 111 12222 112222332 334666543 3
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
....||.|+.+.-..-. . + ...+++.+..+|+++|.|.+.-.
T Consensus 84 ~~~~~D~v~~~~~~~~~---~--------~---~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHL---E--------D---PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhcc---C--------C---HHHHHHHHHHHhcCCcEEEEEec
Confidence 45789999987432211 0 1 24578888999999999987653
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.00 E-value=1.4 Score=40.86 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=64.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk 113 (421)
.+..+||=+|-|.=.+|+.||+. +.+|+|. |...+..+. ++.++. ..|+. .....|+..+. +
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~---g~~V~gv--D~S~~~i~~---a~~~~~---~~~~~~v~~~~~d~~~~~----~- 92 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN---GFDVTAW--DKNPMSIAN---LERIKA---AENLDNLHTAVVDLNNLT----F- 92 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC---CCEEEEE--eCCHHHHHH---HHHHHH---HcCCCcceEEecChhhCC----c-
Confidence 45679999999999999999975 2356554 643444332 333332 22322 12224544432 2
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeE-EEEec
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEV-HVSHK 168 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeI-HVTLk 168 (421)
...||.|+.++...-. +...+..+++.+..+|+|+|.+ .++..
T Consensus 93 ~~~fD~I~~~~~~~~~------------~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 DGEYDFILSTVVLMFL------------EAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred CCCcCEEEEecchhhC------------CHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 3569999988763211 2334678999999999999994 44543
No 59
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.99 E-value=0.32 Score=45.43 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=+|=|.=.++..|++..+....++|.-.+ +++.+ .++.|++.+.-.++++++ .|+..... ...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~~ 145 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PLA 145 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----ccC
Confidence 467899999999999999999987543456665444 34433 466777665433455554 36654321 135
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
.||+|+.+.+-... .......|+++|.+.+.+.+
T Consensus 146 ~fD~Ii~~~~~~~~--------------------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------------------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCEEEEcCCcccc--------------------cHHHHHhcCcCcEEEEEEcC
Confidence 89999998653221 11234579999999987654
No 60
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.98 E-value=0.49 Score=48.58 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=86.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
....+||=||-|.=.+++.|++.++ +.+++++-. |.+.+ + .++++.. ..++.+ ..-|+..+. +...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~-S~~mL-~---~A~~k~~---~~~i~~-i~gD~e~lp----~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQ-SPHQL-A---KAKQKEP---LKECKI-IEGDAEDLP----FPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEEC-CHHHH-H---HHHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence 3467999999999889999998774 346766544 23332 2 1333321 224554 334555442 3457
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--------------CcCcccHHHH
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------PFCKWHIEEL 181 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------PY~sWnI~~L 181 (421)
.||.||-+....-. .+ . ...|+.+..+|+++|.+.|.-.... ....-++.++
T Consensus 178 sFDvVIs~~~L~~~---~d--------~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~l 243 (340)
T PLN02490 178 YADRYVSAGSIEYW---PD--------P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEW 243 (340)
T ss_pred ceeEEEEcChhhhC---CC--------H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHH
Confidence 89999987543221 11 0 1468999999999999877532110 0112345578
Q ss_pred HHhCCcEEEEEeeCCCCCCCC
Q 014642 182 ARKHSLLRLDCVQFRKEDYPG 202 (421)
Q Consensus 182 Aa~aGL~L~~~~~F~~~~YPG 202 (421)
.+++||..++..+..+..|+|
T Consensus 244 L~~aGF~~V~i~~i~~~~~~~ 264 (340)
T PLN02490 244 FTKAGFKDVKLKRIGPKWYRG 264 (340)
T ss_pred HHHCCCeEEEEEEcChhhccc
Confidence 889999999988877655553
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.93 E-value=0.4 Score=45.81 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--E-EEeecccCCcCccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--S-IIHGVDATEMKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~-VlhgVDATkL~~~~~L 112 (421)
+...+||=||=|.=.+|..|++. +.++++. |..+++.+ .++.++. +.|. . -+..-|+.++...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~v--D~s~~~l~---~a~~~~~---~~g~~~~v~~~~~d~~~l~~~--- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILC--DLSAEMIQ---RAKQAAE---AKGVSDNMQFIHCAAQDIAQH--- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEE--ECCHHHHH---HHHHHHH---hcCCccceEEEEcCHHHHhhh---
Confidence 34579999999999999999985 3466655 54344433 2444443 3332 1 2344566665422
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
....||.|+.+...--. ++ ...++..+..+|+|+|.+.|+..+
T Consensus 109 ~~~~fD~V~~~~vl~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 109 LETPVDLILFHAVLEWV---AD-----------PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred cCCCCCEEEehhHHHhh---CC-----------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 24689999987553211 11 125678888999999999887544
No 62
>PRK00811 spermidine synthase; Provisional
Probab=94.78 E-value=0.28 Score=48.33 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=70.0
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeecccCCcCcccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-----KLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-----~~Gv~VlhgVDATkL~~~~~ 111 (421)
..++||.+|=|+-+.+..++++.+ ..+|++--+|. ++.+. +++++..+. .-.++|+ --||.+.-..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~--~vv~~---a~~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~-- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE--RVVEV---CRKYLPEIAGGAYDDPRVELV-IGDGIKFVAE-- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH--HHHHH---HHHHhHHhccccccCCceEEE-ECchHHHHhh--
Confidence 457999999999999999987643 45677777774 23321 344444432 3345554 4466553221
Q ss_pred cccCcccEEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 LSKRKFDRIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..++||.||-+.+. .+. . ....-..||+.++++|+++|.+.+.
T Consensus 147 -~~~~yDvIi~D~~dp~~~-~----------~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 -TENSFDVIIVDSTDPVGP-A----------EGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCCcccEEEECCCCCCCc-h----------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 24689999999643 221 1 1123478999999999999986653
No 63
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.71 E-value=0.36 Score=50.03 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=84.5
Q ss_pred EecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEc
Q 014642 44 VGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFN 123 (421)
Q Consensus 44 VGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFN 123 (421)
+|=|.|=--++| -+.+++++ |=.+.+.+ .+..|++...-.+..|+-.-||++|. |...+||-|+-+
T Consensus 206 cGTGgiLiEagl-----~G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~~~vdaIatD 271 (347)
T COG1041 206 CGTGGILIEAGL-----MGARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRDNSVDAIATD 271 (347)
T ss_pred CCccHHHHhhhh-----cCceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCCCccceEEec
Confidence 455554434333 25678887 43344444 48899999886677777666999997 556689999999
Q ss_pred CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642 124 FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC 192 (421)
Q Consensus 124 FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~ 192 (421)
=|=--....+. ..--+|+..||.+++++|+++|.+.+... . +...-+.+.|+.+...
T Consensus 272 PPYGrst~~~~-----~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~---~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 272 PPYGRSTKIKG-----EGLDELYEEALESASEVLKPGGRIVFAAP----R---DPRHELEELGFKVLGR 328 (347)
T ss_pred CCCCccccccc-----ccHHHHHHHHHHHHHHHhhcCcEEEEecC----C---cchhhHhhcCceEEEE
Confidence 88533211110 01358999999999999999999888776 2 2234677888888876
No 64
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.60 E-value=0.38 Score=47.12 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=82.2
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccccCcc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~~~F 117 (421)
.+||=+|=|.=.++++|+..+. ...++|+-.. .+.+ + -++.|++.+.-.+ +.++. -|+.+ .+....|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis-~~al-~---~a~~n~~~~~~~~~v~~~~-~d~~~-----~~~~~~f 183 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDIS-PDAL-A---VAEENAEKNQLEHRVEFIQ-SNLFE-----PLAGQKI 183 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCCCCcEEEEE-Cchhc-----cCcCCCc
Confidence 5899999999999999998763 3467666443 2222 2 3566766553222 44333 34432 1223479
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH-h
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR-K 184 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa-~ 184 (421)
|.||.|=|-+........ ..+.. ...++..++..|..+|+++|.+.+.+-..+. =.+.++.. .
T Consensus 184 DlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~ 259 (284)
T TIGR00536 184 DIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIK 259 (284)
T ss_pred cEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhc
Confidence 999999988864211100 01111 1346788999999999999999888754321 13445444 3
Q ss_pred CCcEEE
Q 014642 185 HSLLRL 190 (421)
Q Consensus 185 aGL~L~ 190 (421)
.|+.-+
T Consensus 260 ~~~~~~ 265 (284)
T TIGR00536 260 FTWYDV 265 (284)
T ss_pred CCCcee
Confidence 565433
No 65
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.33 E-value=0.76 Score=42.23 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEE-eecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SII-HGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~Vl-hgVDATkL~~~~~Lk~ 114 (421)
...+||=+|-|.=+++..|++.. ..++++-.+. +.+ + .+..++ ...+. .+- ...|+.++... ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~-~~~-~---~a~~~~---~~~~~~~~~~~~~d~~~~~~~---~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASE-ENI-E---VAKLHA---KKDPLLKIEYRCTSVEDLAEK---GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCH-HHH-H---HHHHHH---HHcCCCceEEEeCCHHHhhcC---CC
Confidence 36799999999888888888753 2466665532 222 1 122232 23333 222 23455444322 13
Q ss_pred CcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 115 RKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 115 ~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
..||.|+.++- |++. ...+++++..+|+++|.|.++..+
T Consensus 111 ~~~D~i~~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPD----------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCccEEEehhHHHhCCC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 68999998642 2221 247889999999999999987643
No 66
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.04 E-value=0.76 Score=47.10 Aligned_cols=105 Identities=26% Similarity=0.302 Sum_probs=71.5
Q ss_pred HHHHHhCCCE--EEeecccCCcCcccccccCcccEEEEcCCCCCCCCC--------cccHHHHHHhHHHHHHHHHhhHhc
Q 014642 87 LDTLKKLGAS--IIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGK--------EEDDEVIRMHMSLVEGFFRNASGM 156 (421)
Q Consensus 87 l~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~Gk--------Ed~~~~I~~nr~LL~~FF~SA~~l 156 (421)
.+.|+++|+. ++...|+..+..... ...+||+|+-+=|+.|.+-. ......|.....|=..++.+|.++
T Consensus 199 ~~nl~RlG~~nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~ 277 (355)
T COG0144 199 RENLKRLGVRNVIVVNKDARRLAELLP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL 277 (355)
T ss_pred HHHHHHcCCCceEEEeccccccccccc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666665 778888887755422 23479999999999995211 113455666677778889999999
Q ss_pred cCCCCeEEEEecCCCCcCc-ccHHH-HHHhCCcEEEEE
Q 014642 157 LRPRGEVHVSHKTTAPFCK-WHIEE-LARKHSLLRLDC 192 (421)
Q Consensus 157 L~~~GeIHVTLk~g~PY~s-WnI~~-LAa~aGL~L~~~ 192 (421)
|++||.+.-+.|+-.|-.. =.|.. |.+..++.+...
T Consensus 278 lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 278 LKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred cCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 9999999999999877533 33434 344446655544
No 67
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.78 E-value=0.25 Score=48.07 Aligned_cols=139 Identities=19% Similarity=0.326 Sum_probs=99.5
Q ss_pred cceeeeccCCCC--eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-E-EEeeccc
Q 014642 28 EEKWIMHYSSKH--QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-S-IIHGVDA 103 (421)
Q Consensus 28 ~~K~i~~Yss~~--rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~-VlhgVDA 103 (421)
..+|-.-|.... -+|=||=|.=-|-..+|++. ...|.++--.-.. ....-++.+++.|+ . -+...||
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~--------~v~~~l~k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVP--------GVAKALKKIKELGLKNLRLLCGDA 107 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehH--------HHHHHHHHHHHcCCCcEEEEcCCH
Confidence 466777777764 67889999999999999987 4668888544321 12234666777777 3 5678999
Q ss_pred CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642 104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR 183 (421)
Q Consensus 104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa 183 (421)
+.+-.+. ...+..|+|..|||-.=.+-+. .++|-+=..|++-...+|+++|.||+.--.- .|-.|.+.+...
T Consensus 108 ~~~l~~~-~~~~sl~~I~i~FPDPWpKkRH------~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~-~y~e~~~~~~~~ 179 (227)
T COG0220 108 VEVLDYL-IPDGSLDKIYINFPDPWPKKRH------HKRRLTQPEFLKLYARKLKPGGVLHFATDNE-EYFEWMMLEVLE 179 (227)
T ss_pred HHHHHhc-CCCCCeeEEEEECCCCCCCccc------cccccCCHHHHHHHHHHccCCCEEEEEecCH-HHHHHHHHHHHh
Confidence 9987764 3456899999999988764322 1234445678888899999999999987653 577885555433
No 68
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.73 E-value=1.3 Score=43.18 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..++.+||=||-|.=..+..|++.+ +..+++.-.. .+.+ + .+.++... ...+.+ ...|++++. +..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s-~~~~-~---~a~~~~~~--~~~i~~-~~~D~~~~~----~~~ 115 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDIC-EKMV-N---IAKLRNSD--KNKIEF-EANDILKKD----FPE 115 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECC-HHHH-H---HHHHHcCc--CCceEE-EECCcccCC----CCC
Confidence 4567899999998877788888765 3466666553 2222 1 12222221 112333 345776542 345
Q ss_pred CcccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 115 RKFDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 115 ~~FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
..||.|+.+. -|.+. + + ...+|+.+..+|+|+|.+.|+-
T Consensus 116 ~~FD~V~s~~~l~h~~~---~--------d---~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSY---A--------D---KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCeEEEEEhhhHHhCCH---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence 7899999863 56542 1 1 2478889999999999999875
No 69
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.55 Score=47.84 Aligned_cols=133 Identities=24% Similarity=0.267 Sum_probs=85.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
..+||=||=|.==-+..|++..+ ..-.|-.| +...+. -++.|+..=.=.+..|.++-..... .. +
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v------~~-k 224 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV------EG-K 224 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc------cc-c
Confidence 34778888888777777777653 22333333 222222 2455544322223345555444443 23 8
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc-----c-cHHHHHHhCCcEEE
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK-----W-HIEELARKHSLLRL 190 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-----W-nI~~LAa~aGL~L~ 190 (421)
||.||-|=|.--+ + ..-..+...+|+.|.+.|+++|++.|--....||.. . +++.+|+..||.+.
T Consensus 225 fd~IisNPPfh~G--~-------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~Vl 295 (300)
T COG2813 225 FDLIISNPPFHAG--K-------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFKVL 295 (300)
T ss_pred ccEEEeCCCccCC--c-------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEEEE
Confidence 9999999996643 2 124566789999999999999999999886666632 2 47778888888877
Q ss_pred EEe
Q 014642 191 DCV 193 (421)
Q Consensus 191 ~~~ 193 (421)
+..
T Consensus 296 ~a~ 298 (300)
T COG2813 296 RAK 298 (300)
T ss_pred EEe
Confidence 654
No 70
>PTZ00146 fibrillarin; Provisional
Probab=93.64 E-value=3.1 Score=42.24 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=83.6
Q ss_pred eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccc
Q 014642 33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~ 111 (421)
.+..+.++||=+|=|.=+|+..|++..+..-.|+|--+. +.+.+. -++.. ++.++..+.+ |++.......
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~d------Ll~~ak~r~NI~~I~~-Da~~p~~y~~ 198 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRD------LTNMAKKRPNIVPIIE-DARYPQKYRM 198 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHH------HHHHhhhcCCCEEEEC-CccChhhhhc
Confidence 355678899999999999999999988654467776443 221111 01111 1245655543 7765322111
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-----CC----cCcccHHHHH
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-----AP----FCKWHIEELA 182 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-----~P----Y~sWnI~~LA 182 (421)
+ ...||+|+-+.... |+. ..+..+|..+|+++|.+.|..+-. .| +. +.+ +..
T Consensus 199 ~-~~~vDvV~~Dva~p------dq~----------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L 259 (293)
T PTZ00146 199 L-VPMVDVIFADVAQP------DQA----------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKL 259 (293)
T ss_pred c-cCCCCEEEEeCCCc------chH----------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHH
Confidence 1 24699999988521 111 123344888999999999976532 12 22 445 556
Q ss_pred HhCCcEEEEEeeCC
Q 014642 183 RKHSLLRLDCVQFR 196 (421)
Q Consensus 183 a~aGL~L~~~~~F~ 196 (421)
+++||..++.+.+.
T Consensus 260 ~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 260 KKEGLKPKEQLTLE 273 (293)
T ss_pred HHcCCceEEEEecC
Confidence 88899999887763
No 71
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.38 E-value=0.3 Score=52.20 Aligned_cols=135 Identities=10% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccccc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..-+|=||=|+=.|.+.+|+.+ +..|+++--.... .....+...++. ++.++.+ |+..+... +..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~~-~~~~~~~~--~~~ 415 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFPN-NLDLILND--LPN 415 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEcC-CHHHHHHh--cCc
Confidence 4467889999999999999988 4678998755421 122223333443 3455443 77766544 456
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLD 191 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~ 191 (421)
..+|.|..|||-.=.|-+. .++|-+=..|+.....+|++||+||+.--. .+|-.|-++.+.+..++.+..
T Consensus 416 ~sv~~i~i~FPDPWpKkrh------~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~-~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQ------KKKRIFNKERLKILQDKLKDNGNLVFASDI-ENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred ccccEEEEECCCCCCCCCC------ccccccCHHHHHHHHHhcCCCCEEEEEcCC-HHHHHHHHHHHHhCCCeEecc
Confidence 7899999999998764332 123444467888888899999999987655 469999888887777787653
No 72
>PLN02366 spermidine synthase
Probab=93.24 E-value=0.42 Score=48.22 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKF-KEARSNLDTLKKLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY-~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
....+||+||=|+-+.+..|+++. ...+|++--+|.. -++.++| +.. +. .+..-.++|+.+ ||...-+. ..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~--~~-~~~dpRv~vi~~-Da~~~l~~--~~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDL--AV-GFDDPRVNLHIG-DGVEFLKN--AP 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhh--cc-ccCCCceEEEEC-hHHHHHhh--cc
Confidence 345799999999999999998763 3456877777742 2333332 211 11 244445666653 55443211 12
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH 164 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH 164 (421)
.++||.||-+.+...+ . .....-..||+.+..+|+|+|.+.
T Consensus 163 ~~~yDvIi~D~~dp~~--~--------~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 163 EGTYDAIIVDSSDPVG--P--------AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred CCCCCEEEEcCCCCCC--c--------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 4679999998765432 1 112234689999999999999873
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.22 E-value=1.3 Score=41.25 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
..+++||=||=|.=.++..|++..+....++ +.|..+++.+ .+++|+..+.-.+..-+..-|+.+.-. ...
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~--~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~ 141 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVY--TVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGLE----KHA 141 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEE--EEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCCc----cCC
Confidence 3567999999999999999998875333454 4554444443 366676654322212234456655321 236
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.||+|+.+..-.- + -......|+++|.+.+.+.++
T Consensus 142 ~fD~Ii~~~~~~~----------~----------~~~l~~~L~~gG~lvi~~~~~ 176 (205)
T PRK13944 142 PFDAIIVTAAAST----------I----------PSALVRQLKDGGVLVIPVEEG 176 (205)
T ss_pred CccEEEEccCcch----------h----------hHHHHHhcCcCcEEEEEEcCC
Confidence 8999999865211 1 112446899999999987553
No 74
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.16 E-value=1.4 Score=47.06 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=86.4
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccccC
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~~ 115 (421)
+.+||=++=|==+=|..||..++....|+|.-.+. .+.....+|++. .|+. ++..-|++++.... ..
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~-----~R~~~L~~nl~r---~G~~nv~v~~~D~~~~~~~~---~~ 182 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA-----SRVKVLHANISR---CGVSNVALTHFDGRVFGAAL---PE 182 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH-----HHHHHHHHHHHH---cCCCeEEEEeCchhhhhhhc---hh
Confidence 34554444433344455555554334577655542 222234556555 4543 45667888876542 35
Q ss_pred cccEEEEcCCCCCCCC---Cc------ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhC
Q 014642 116 KFDRIIFNFPHAGFHG---KE------EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKH 185 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~G---kE------d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~a 185 (421)
.||+|+-+=|+.|. | +. .....+.....|=...+.+|.++|+|||.+.=+-|+=.|- |.-+|..+.++.
T Consensus 183 ~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 183 TFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred hcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 69999999999994 3 11 1234555666677888999999999999999898987664 666777765554
No 75
>PRK06922 hypothetical protein; Provisional
Probab=93.15 E-value=0.56 Score=52.38 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=74.2
Q ss_pred eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~ 111 (421)
+..+.++.+||=||=|.=.++..|++.+. +.+++| .|-...+.+. ++.++... ...+.++.+ |+.++...
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtG--IDIS~~MLe~---Ararl~~~-g~~ie~I~g-Da~dLp~~-- 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYG--IDISENVIDT---LKKKKQNE-GRSWNVIKG-DAINLSSS-- 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEE--EECCHHHHHH---HHHHhhhc-CCCeEEEEc-chHhCccc--
Confidence 45666788999999998888888988763 445655 4533333332 33333221 123444444 77776432
Q ss_pred cccCcccEEEEcCCC------CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 LSKRKFDRIIFNFPH------AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH------~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
+....||.|++|++- +...+. ..+..-+..+++++..+|+|||.+.|.
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~-------~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGK-------KFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccc-------cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 345789999999652 211111 112345678999999999999999886
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=92.91 E-value=0.86 Score=43.60 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+.+||=||=|.=..+..|++.+.. .+...|..|.-.++.+ .++.++...... .+.+ +.-|+..+. + .
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~-~~~~v~gvD~S~~ml~---~A~~~~~~~~~~~~v~~-~~~d~~~~~----~--~ 124 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHH-DNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDV-IEGDIRDIA----I--E 124 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEE-EeCChhhCC----C--C
Confidence 5678999988877777778875421 1345566775444444 255555443222 3443 455666542 1 3
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
.+|.||.|+..--. +..-...+++.+..+|+|||.+.++-
T Consensus 125 ~~D~vv~~~~l~~l------------~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 125 NASMVVLNFTLQFL------------EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCEEehhhHHHhC------------CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 48999988763221 01113477888899999999998874
No 77
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=92.89 E-value=3 Score=40.96 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=66.0
Q ss_pred ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSEL 112 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~L 112 (421)
.+++.++||=||=|.=+++.++++++. ++.+|.+|..+ +.+ .++.|++...-. .++++ .-|+-+.. +
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~-~~~---~a~~~~~~~gl~~rv~~~-~~d~~~~~----~ 213 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPG-AID---LVNENAAEKGVADRMRGI-AVDIYKES----Y 213 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHH-HHH---HHHHHHHhCCccceEEEE-ecCccCCC----C
Confidence 367778999999999999999999873 34566777643 332 245555443211 13333 33554321 1
Q ss_pred ccCcccEEEEc-CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 113 SKRKFDRIIFN-FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 113 k~~~FDrIIFN-FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..+|.|++. .-|.- +.......|+.+.+.|+|+|.+.|.
T Consensus 214 --~~~D~v~~~~~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 --PEADAVLFCRILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred --CCCCEEEeEhhhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 236987654 34432 1223346688899999999999887
No 78
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=92.66 E-value=0.18 Score=48.12 Aligned_cols=101 Identities=25% Similarity=0.361 Sum_probs=57.3
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..++..||-.-=|==.||+.+|+. +.+..|+|--..... |.-...|++.=+=.+....+.-||.++.. .
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a-----~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-----~ 167 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDA-----VEYLKENIRLNKVENRIEVINGDAREFLP-----E 167 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHH-----HHHHHHHHHHTT-TTTEEEEES-GGG--------T
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHH-----HHHHHHHHHHcCCCCeEEEEcCCHHHhcC-----c
Confidence 455677766544444555666664 346679988776322 11123343322222445677889988754 5
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH 164 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH 164 (421)
..|||||.|.|+... .|+..|..+++++|-||
T Consensus 168 ~~~drvim~lp~~~~------------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPESSL------------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TSSGG------------------GGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChHHHH------------------HHHHHHHHHhcCCcEEE
Confidence 789999999999873 68888888999988887
No 79
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=92.43 E-value=1.1 Score=45.96 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=80.2
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CEEEeec-ccCCcCcccccccCc
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLG-ASIIHGV-DATEMKEHSELSKRK 116 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgV-DATkL~~~~~Lk~~~ 116 (421)
.||=||=|.=--|++|+..++ +.++|.-| |...+. -|.+|.+.|+-.| +.|+|.+ --....+++ +..++
T Consensus 151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~ 222 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGK 222 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccCc
Confidence 799999998888888887775 44455555 332222 4788999999876 5566542 222233343 45688
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.|.||-|=|-+-....++-.-.|+.+ -..+.+|+.-|..+|+++|.+.+.+.
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99999999988631111111112211 24567899999999999999999987
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.43 E-value=1.6 Score=41.22 Aligned_cols=107 Identities=13% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk 113 (421)
.++.+||=||=|.=.++..|++.+. .+.++ |.+|-.+++.+ .++.+++.... ..++++ .-|+.++. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v--~gvD~s~~ml~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKI--IGIDNSQPMVE---RCRQHIAAYHSEIPVEIL-CNDIRHVE----I- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeE--EEEeCCHHHHH---HHHHHHHhcCCCCCeEEE-ECChhhCC----C-
Confidence 4567999999999999999998763 23344 45554334433 25555544321 134544 34777653 1
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..+|.|+.++...-. +..-...+++.+..+|+|+|.+.++
T Consensus 121 -~~~d~v~~~~~l~~~------------~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 -KNASMVILNFTLQFL------------PPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -CCCCEEeeecchhhC------------CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 348999988752211 0001236788889999999999887
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=92.33 E-value=1.8 Score=43.77 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=81.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=+|=|.=-|++.+++..+ +.+|++.-.+. .+.+. ++.|+ .++.+ ..-|+..+. ...+|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp--~al~~---Ar~n~-----~~v~~-v~~D~~e~~-----~~~kF 127 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP--EFARI---GKRLL-----PEAEW-ITSDVFEFE-----SNEKF 127 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH--HHHHH---HHHhC-----cCCEE-EECchhhhc-----ccCCC
Confidence 35898886666666667766542 35777775553 23221 23332 14544 345665542 23679
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHh------HHH-HHHHHHhhHhccCCCCeEEEEecCCCCc-----CcccHHHHHHhC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMH------MSL-VEGFFRNASGMLRPRGEVHVSHKTTAPF-----CKWHIEELARKH 185 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~n------r~L-L~~FF~SA~~lL~~~GeIHVTLk~g~PY-----~sWnI~~LAa~a 185 (421)
|.||.|-|.... ..++.....+.. ..| +..|++....+|+|+|.+ ...-.+.|+ +.=...++-+++
T Consensus 128 DlIIsNPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~-~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 128 DVVISNPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA-GFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred cEEEEcCCcccc-CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceE-EEEEeccccccccCCHHHHHHHHHhc
Confidence 999999999874 233332222221 333 689999999999999954 444667674 223444577888
Q ss_pred CcEEE
Q 014642 186 SLLRL 190 (421)
Q Consensus 186 GL~L~ 190 (421)
||++.
T Consensus 206 g~~~~ 210 (279)
T PHA03411 206 GLVTY 210 (279)
T ss_pred CcEec
Confidence 88864
No 82
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.23 E-value=1.2 Score=44.15 Aligned_cols=132 Identities=22% Similarity=0.354 Sum_probs=67.2
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-HHhCCCEE-EeecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT-LKKLGASI-IHGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~-Lr~~Gv~V-lhgVDATkL~~~~~Lk~ 114 (421)
.+++||+|||+|+ .|+|+|-. +.+.+|+.=-.| +.+.+ | |+. -++.|..| .+--|..+-- +.--.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiD--eRll~-f------I~~~a~~~gl~i~~~~~DlR~~L--P~~~~ 110 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALT-GLPKRITVVDID--ERLLD-F------INRVAEEEGLPIEAVHYDLRDPL--PEELR 110 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S---HHHHH-H------HHHHHHHHT--EEEE---TTS-----TTTS
T ss_pred cCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcC--HHHHH-H------HHHHHHHcCCceEEEEecccccC--CHHHh
Confidence 3679999999997 35555532 335677655555 33332 1 221 22334431 2222333210 11114
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCC-eEEEEecCCCC-cCcc-cHHHHHHhCCcEEEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRG-EVHVSHKTTAP-FCKW-HIEELARKHSLLRLD 191 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~G-eIHVTLk~g~P-Y~sW-nI~~LAa~aGL~L~~ 191 (421)
++||.++-+=|-+.- | +.-|..-+.+.|+..| .+.+.+...++ ...| ++.++..+.||.+.+
T Consensus 111 ~~fD~f~TDPPyT~~-G--------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 111 GKFDVFFTDPPYTPE-G--------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp S-BSEEEE---SSHH-H--------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred cCCCEEEeCCCCCHH-H--------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence 889999999998862 2 4578888989998655 66666666543 4667 788888899999998
Q ss_pred Ee-eCC
Q 014642 192 CV-QFR 196 (421)
Q Consensus 192 ~~-~F~ 196 (421)
.. .|.
T Consensus 176 ii~~Fn 181 (243)
T PF01861_consen 176 IIPDFN 181 (243)
T ss_dssp EEEEEE
T ss_pred HHhhhc
Confidence 74 344
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.16 E-value=1.2 Score=45.99 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=||=|.=.++..|++.++ ..|++..+.. +.+. .+..+++ ..++.+. -.|+..+ ..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~-~~l~----~A~~~~~---~l~v~~~-~~D~~~l-------~~ 227 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISA-EQQK----LAQERCA---GLPVEIR-LQDYRDL-------NG 227 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCH-HHHH----HHHHHhc---cCeEEEE-ECchhhc-------CC
Confidence 4678999999999999999998764 4677765542 2221 2444442 2233332 2354433 35
Q ss_pred cccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 116 KFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 116 ~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
.||.|+-+ |-|+|. + + +..+|+.+..+|+|+|.+.|..
T Consensus 228 ~fD~Ivs~~~~ehvg~---~--------~---~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 228 QFDRIVSVGMFEHVGP---K--------N---YRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCCEEEEeCchhhCCh---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence 79999865 456652 1 1 3478999999999999988864
No 84
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.05 E-value=0.32 Score=39.67 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=58.2
Q ss_pred EEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEE
Q 014642 41 ILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRI 120 (421)
Q Consensus 41 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrI 120 (421)
||=+|=|+-.....|++.+..+.+...+..|--+++.+. ++++..+ ....++. +--|++++.. ...+||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~---~~~~~~~-~~~~~~~-~~~D~~~l~~----~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL---AKKRFSE-DGPKVRF-VQADARDLPF----SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH---HHHHSHH-TTTTSEE-EESCTTCHHH----HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH---HHHhchh-cCCceEE-EECCHhHCcc----cCCCeeEE
Confidence 567888998999999988722223455556633333321 3333333 2224543 6778877643 35699999
Q ss_pred EEc---CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCC
Q 014642 121 IFN---FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRG 161 (421)
Q Consensus 121 IFN---FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~G 161 (421)
++. +.|. .++-+..+|+++.++|+|+|
T Consensus 72 ~~~~~~~~~~--------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHL--------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGS--------------SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCC--------------CHHHHHHHHHHHHHHhCCCC
Confidence 994 4453 24446788889999999887
No 85
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=91.74 E-value=1.7 Score=41.39 Aligned_cols=100 Identities=21% Similarity=0.221 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
....+||=||=|.=.++..|++.+. +..+++ .|.-+.+.+. + ++.++.++. .|+..+. ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~g--vD~s~~~~~~---a-------~~~~~~~~~-~d~~~~~-----~~~ 88 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEA--LDSSPEMVAA---A-------RERGVDART-GDVRDWK-----PKP 88 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEE--EECCHHHHHH---H-------HhcCCcEEE-cChhhCC-----CCC
Confidence 3567999998888888889988763 345654 4533333321 1 233565543 5766552 235
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.||.|+.|+..-=. .+ . ..+++.+..+|+|||.+.++..
T Consensus 89 ~fD~v~~~~~l~~~---~d-------~----~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 89 DTDVVVSNAALQWV---PE-------H----ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CceEEEEehhhhhC---CC-------H----HHHHHHHHHhCCCCcEEEEEcC
Confidence 79999999864321 11 1 3567778889999999999854
No 86
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.72 E-value=2.2 Score=44.46 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~ 114 (421)
.+..+||=||=|.=..+..|++.++ .++++.-.. .+.+. .|..|.. ..+..|- ...|+..+. +..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS-~~~l~----~A~~~~~---~~~~~v~~~~~d~~~~~----~~~ 330 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLS-VNMIS----FALERAI---GRKCSVEFEVADCTKKT----YPD 330 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECC-HHHHH----HHHHHhh---cCCCceEEEEcCcccCC----CCC
Confidence 5678999999999889999998763 467666653 33332 2444443 2222232 345666542 334
Q ss_pred CcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 115 RKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 115 ~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
..||.|+.+ +-|+.. ...+|+.+..+|+|+|.+.|+-
T Consensus 331 ~~fD~I~s~~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 331 NSFDVIYSRDTILHIQD----------------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCEEEEEECCcccccCC----------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 689999986 555541 1367888999999999998874
No 87
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=91.68 E-value=1.9 Score=39.85 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~~~ 116 (421)
..+||=+|-|.=.+|..||+. +..|+|. |-.+++.++ +..+. +..|+.|. ...|+..+ .+ ...
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~i--D~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~----~~-~~~ 94 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAW--DHNPASIAS---VLDMK---ARENLPLRTDAYDINAA----AL-NED 94 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHHH---HHHHH---HHhCCCceeEeccchhc----cc-cCC
Confidence 469999999999999999975 2356665 533334432 22222 23344321 12343322 12 246
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEe
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSH 167 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTL 167 (421)
||.|+.+++..-. +...+..+++++..+|+|+|. +.++.
T Consensus 95 fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVVFMFL------------QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecccccC------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999988764321 223456789999999999998 44443
No 88
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.62 E-value=2.1 Score=40.52 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+..+||=||-|+=.++..|++.++ +.++++.-.. +++.+. +..++ .++.+ ...|+..+. ...
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~i~~---a~~~~-----~~~~~-~~~d~~~~~-----~~~ 92 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSS--PAMLAE---ARSRL-----PDCQF-VEADIASWQ-----PPQ 92 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECC--HHHHHH---HHHhC-----CCCeE-EECchhccC-----CCC
Confidence 4567999999999999999998863 4467766544 333321 22222 13333 345666542 235
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
.||.|+.|+..--. .| ...+|+.+..+|+++|.+.++..+
T Consensus 93 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQWL---PD-----------HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChhhC---CC-----------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 89999999764221 11 135778888899999999998644
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=91.28 E-value=5.8 Score=40.31 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=81.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
+++||=||=|+=-++..++.. | +..+ +.+|.-..+...+..++. .+...+-..+...|+..|.. ...|
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~-g-~~~v--~GiDpS~~ml~q~~~~~~---~~~~~~~v~~~~~~ie~lp~-----~~~F 189 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH-G-AKSL--VGIDPTVLFLCQFEAVRK---LLDNDKRAILEPLGIEQLHE-----LYAF 189 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc-C-CCEE--EEEcCCHHHHHHHHHHHH---HhccCCCeEEEECCHHHCCC-----CCCc
Confidence 579999999998888888765 2 2233 566743434332221111 11212222233355555542 2379
Q ss_pred cEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--CCC------C---c----Ccc----
Q 014642 118 DRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--TTA------P---F----CKW---- 176 (421)
Q Consensus 118 DrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------P---Y----~sW---- 176 (421)
|.|+.+. -|... ...+++.+..+|++||++.|+.. ++. | | +.|
T Consensus 190 D~V~s~gvL~H~~d----------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS 253 (314)
T TIGR00452 190 DTVFSMGVLYHRKS----------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPS 253 (314)
T ss_pred CEEEEcchhhccCC----------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCC
Confidence 9999873 44321 24688999999999999988632 221 1 2 223
Q ss_pred --cHHHHHHhCCcEEEEEeeCCCCCCCCCccccCCC
Q 014642 177 --HIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAG 210 (421)
Q Consensus 177 --nI~~LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G 210 (421)
.++.+.+++||..++.+.-.. .-.++.++|..
T Consensus 254 ~~~L~~~L~~aGF~~V~i~~~~~--tt~~eqr~t~w 287 (314)
T TIGR00452 254 VSALKNWLEKVGFENFRILDVLK--TTPEEQRKTDW 287 (314)
T ss_pred HHHHHHHHHHCCCeEEEEEeccC--CCHHHhhhhhh
Confidence 234566778888887654332 22235555543
No 90
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.24 E-value=1.7 Score=40.06 Aligned_cols=111 Identities=24% Similarity=0.259 Sum_probs=67.4
Q ss_pred EEecCChhHHHHHHHhhCCC------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 43 LVGEGDFSFSFALSQKFGSA------SNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 43 LVGEGDFSFSlSLa~~~gs~------~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
..|-|.+---.++......+ ..+++.-.| .+..+ .+..|++...-.+..-+...|+++|. +....
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~ 106 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGS 106 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSB
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCC
Confidence 36888888777776443211 124444444 33332 36778765443334456667999997 34568
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
+|.||.|=|.--..+ .-...++|...|++.++++|++ ..+.|+..+
T Consensus 107 ~d~IvtnPPyG~r~~------~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLG------SKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp SCEEEEE--STTSHC------HHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred CCEEEECcchhhhcc------CHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 999999999843212 1234589999999999999998 777777654
No 91
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.23 E-value=2.2 Score=43.43 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=64.8
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
-.++++||-||-|.=.++..|++..+....|++. |..+++.+ .+++|++.+.-..+.++.+ |+.+... ..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~----~~ 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVP----EF 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhccc----cc
Confidence 3467899999999999999999887533356654 44344443 3566665543334555544 6655422 12
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
..||.|+.++ |. . ++ ... ....|+++|.+.+....
T Consensus 148 ~~fD~Ii~~~---g~---~----~i------p~~----~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 148 APYDVIFVTV---GV---D----EV------PET----WFTQLKEGGRVIVPINL 182 (322)
T ss_pred CCccEEEECC---ch---H----Hh------HHH----HHHhcCCCCEEEEEeCC
Confidence 4699999873 21 1 11 111 23579999998887643
No 92
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.07 E-value=0.43 Score=46.38 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=86.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
+.++||++|=|+-+-+..|.++. +...|++--+|.. -++.++|=...... +..-.++|++ -||-..-+.. ..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~~---~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKET---QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHTS---SS
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHhc---cC
Confidence 56799999999999999998764 3457888877743 24444543221111 5555677744 4665543221 23
Q ss_pred -cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc----CcccHHHHHHhCCcEEE
Q 014642 116 -KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF----CKWHIEELARKHSLLRL 190 (421)
Q Consensus 116 -~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnI~~LAa~aGL~L~ 190 (421)
+||.||-+-+... +.. .+ ..-..||+.|++.|+++|-+.+.. +.|+ ..+.|...-+...- ..
T Consensus 149 ~~yDvIi~D~~dp~--~~~-------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~-~v 215 (246)
T PF01564_consen 149 EKYDVIIVDLTDPD--GPA-------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP-QV 215 (246)
T ss_dssp T-EEEEEEESSSTT--SCG-------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS-EE
T ss_pred CcccEEEEeCCCCC--CCc-------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC-ce
Confidence 8999999888732 211 12 345799999999999999988877 3233 33555554444444 33
Q ss_pred EEeeCCCCCCCC
Q 014642 191 DCVQFRKEDYPG 202 (421)
Q Consensus 191 ~~~~F~~~~YPG 202 (421)
....+....||+
T Consensus 216 ~~~~~~vP~~~~ 227 (246)
T PF01564_consen 216 KPYTAYVPSYGS 227 (246)
T ss_dssp EEEEEECTTSCS
T ss_pred EEEEEEcCeecc
Confidence 333333333443
No 93
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=90.78 E-value=0.74 Score=35.51 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=60.2
Q ss_pred EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEE
Q 014642 42 LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRII 121 (421)
Q Consensus 42 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrII 121 (421)
|=+|=|+=.++..|++. .+.+++++-.+.. ..+ ..-+.++..++. +...|+++| .+..+.||.|+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~--~~~------~~~~~~~~~~~~-~~~~d~~~l----~~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEE--MLE------QARKRLKNEGVS-FRQGDAEDL----PFPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HH--HHH------HHHHHTTTSTEE-EEESBTTSS----SS-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHH--HHH------HHHhcccccCch-heeehHHhC----ccccccccccc
Confidence 34677888899999987 4567877766532 211 112233344555 667778887 34578999999
Q ss_pred EcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 122 FNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 122 FNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
.+.=.-=. .=...+++.+..+|+|+|.+.|
T Consensus 66 ~~~~~~~~--------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLHHL--------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGGGS--------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccceeec--------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 87532211 1245889999999999999875
No 94
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=90.71 E-value=2.3 Score=44.04 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=79.8
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
+..+||=+|=|-=.||+.||+.. ..|+| .|..++..+ .+..|++...-.++.++. -|+.++-.........
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~---~~V~~--vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA---KSVVG--IEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQI 362 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC---CEEEE--EEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCCC
Confidence 45689888888888888888753 35555 453333332 466776654333455544 4665532211123457
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc-ccHHHHHHhCCcEEEEEeeC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK-WHIEELARKHSLLRLDCVQF 195 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-WnI~~LAa~aGL~L~~~~~F 195 (421)
||.||+|=|..|. ..+++... . -|++++-|+|+. + |-.. -++..| .+.||.+....+|
T Consensus 363 ~D~vi~dPPr~G~------------~~~~l~~l----~-~l~~~~ivyvsc-~--p~tlard~~~l-~~~gy~~~~~~~~ 421 (431)
T TIGR00479 363 PDVLLLDPPRKGC------------AAEVLRTI----I-ELKPERIVYVSC-N--PATLARDLEFL-CKEGYGITWVQPV 421 (431)
T ss_pred CCEEEECcCCCCC------------CHHHHHHH----H-hcCCCEEEEEcC-C--HHHHHHHHHHH-HHCCeeEEEEEEe
Confidence 9999999998874 12222221 1 267777666753 3 4221 233334 3568999999999
Q ss_pred CCCCCCCC
Q 014642 196 RKEDYPGY 203 (421)
Q Consensus 196 ~~~~YPGY 203 (421)
| .||.=
T Consensus 422 D--mFP~T 427 (431)
T TIGR00479 422 D--MFPHT 427 (431)
T ss_pred c--cCCCC
Confidence 8 57743
No 95
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.21 E-value=7 Score=37.57 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
....+||-||=|.=-.+.++++ .| +..++|+-.|. ..+ + .+++|++ ..|+... + .+.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g-~~~v~giDis~-~~l-~---~A~~n~~---~~~~~~~--~---~~~~----~~~ 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LG-AKKVLAVDIDP-QAV-E---AARENAE---LNGVELN--V---YLPQ----GDL 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEEECCH-HHH-H---HHHHHHH---HcCCCce--E---EEcc----CCC
Confidence 3577999999998655555544 44 33577775553 222 2 3555643 2343100 0 1110 012
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV 193 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~ 193 (421)
.||.|+.|.. ...+..++..+..+|+++|.+.++-... ...-.+.+..++.||.+.+..
T Consensus 179 ~fD~Vvani~-----------------~~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 179 KADVIVANIL-----------------ANPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CcCEEEEcCc-----------------HHHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEE
Confidence 7999999842 1124567888889999999999873221 133456677888999888653
No 96
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=90.09 E-value=5.2 Score=41.86 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=80.8
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
++.+||=+|=|.=.||++||+.. ..++| .|..++..+ .|+.|++...-.++.+ ..-|+.+.-....+....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~g--vD~s~~al~---~A~~n~~~~~~~~v~~-~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVG--VEGVEAMVE---RARENARRNGLDNVTF-YHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEE--EeCCHHHHH---HHHHHHHHcCCCceEE-EEeChHHhhhhhhhhcCC
Confidence 45789888888888888888763 35665 453333333 3666765443223433 344665432111123457
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~ 196 (421)
||.||.|=|..|. . +++.. ... +++++-|+|+-.-.. -.-++..|. +.||.+.+..+||
T Consensus 368 fD~Vi~dPPr~g~-~------------~~~~~----l~~-~~~~~ivyvSCnp~t--laRDl~~L~-~~gY~l~~i~~~D 426 (443)
T PRK13168 368 FDKVLLDPPRAGA-A------------EVMQA----LAK-LGPKRIVYVSCNPAT--LARDAGVLV-EAGYRLKRAGMLD 426 (443)
T ss_pred CCEEEECcCCcCh-H------------HHHHH----HHh-cCCCeEEEEEeChHH--hhccHHHHh-hCCcEEEEEEEec
Confidence 9999999999984 1 11111 111 477777777763322 223555553 5789999999999
Q ss_pred CCCCCCCc
Q 014642 197 KEDYPGYS 204 (421)
Q Consensus 197 ~~~YPGY~ 204 (421)
.||.=.
T Consensus 427 --mFP~T~ 432 (443)
T PRK13168 427 --MFPHTG 432 (443)
T ss_pred --cCCCCC
Confidence 588433
No 97
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=89.87 E-value=4.5 Score=40.82 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+.+||=||=|+=.++..+++.. +..|++ .|.......+.. + .-..+. ...+.++ ..|+..+.. ..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g--~~~V~G--iD~S~~~l~q~~-a--~~~~~~~~~~i~~~-~~d~e~lp~-----~~ 188 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG--AKLVVG--IDPSQLFLCQFE-A--VRKLLGNDQRAHLL-PLGIEQLPA-----LK 188 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--CCEEEE--EcCCHHHHHHHH-H--HHHhcCCCCCeEEE-eCCHHHCCC-----cC
Confidence 35799999988888888888763 334544 553333322211 1 111111 1234443 346666642 46
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe--cCCC------C---c----Ccc----
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH--KTTA------P---F----CKW---- 176 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL--k~g~------P---Y----~sW---- 176 (421)
.||.|+.+ |. + .|..=...+|+.+...|+|||++.++. .++. | | +.|
T Consensus 189 ~FD~V~s~----~v---------l-~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps 254 (322)
T PRK15068 189 AFDTVFSM----GV---------L-YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPS 254 (322)
T ss_pred CcCEEEEC----Ch---------h-hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCC
Confidence 79999964 11 1 121113467889999999999998763 1221 1 2 112
Q ss_pred --cHHHHHHhCCcEEEEEeeCC
Q 014642 177 --HIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 177 --nI~~LAa~aGL~L~~~~~F~ 196 (421)
.+..+.+++||..++.+...
T Consensus 255 ~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 255 VPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHHHHcCCceEEEEeCC
Confidence 23556667777777666544
No 98
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=89.70 E-value=4.8 Score=41.01 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=78.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+.+||=||=|+=-|+..|++. +.+| |..|.-++..+. ++.+.+..- ..++.++. -|+.++. ....
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V--~GID~s~~~i~~---Ar~~~~~~~~~~~i~~~~-~dae~l~----~~~~ 197 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATV--TGVDAVDKNVKI---ARLHADMDPVTSTIEYLC-TTAEKLA----DEGR 197 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEE--EEEeCCHHHHHH---HHHHHHhcCcccceeEEe-cCHHHhh----hccC
Confidence 4568999999998899999863 2344 455654444432 333321110 11344333 4666653 2347
Q ss_pred cccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------------------C--c
Q 014642 116 KFDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------------------P--F 173 (421)
Q Consensus 116 ~FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------P--Y 173 (421)
.||.|+... -|+.. ...|++.+..+|+|+|.+.|+--+.. | .
T Consensus 198 ~FD~Vi~~~vLeHv~d----------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gt 261 (322)
T PLN02396 198 KFDAVLSLEVIEHVAN----------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGT 261 (322)
T ss_pred CCCEEEEhhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCC
Confidence 899999865 33331 24688889999999999998853321 1 1
Q ss_pred Ccc-------cHHHHHHhCCcEEEEEeeC
Q 014642 174 CKW-------HIEELARKHSLLRLDCVQF 195 (421)
Q Consensus 174 ~sW-------nI~~LAa~aGL~L~~~~~F 195 (421)
..| .+..+.+++||.+.+..-+
T Consensus 262 h~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 262 HQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred cCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 123 3566777788877766433
No 99
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=89.61 E-value=3.5 Score=41.72 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=92.8
Q ss_pred ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
+-.++++||=||=|==+.+.=+|+.+ +++||+.++.. +++ ..+ -+.+++.|....-.|- |.....+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~-~Q~----~~~---~~r~~~~gl~~~v~v~---l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE-EQL----AYA---EKRIAARGLEDNVEVR---LQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH-HHH----HHH---HHHHHHcCCCcccEEE---eccccccc
Confidence 45678999999999999999999998 57999999863 222 222 2346677766222222 22222333
Q ss_pred cCcccEEEE--cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE-ecCCC-C---c-------------
Q 014642 114 KRKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS-HKTTA-P---F------------- 173 (421)
Q Consensus 114 ~~~FDrIIF--NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT-Lk~g~-P---Y------------- 173 (421)
.+|||||- -|=|+|... ...||+.+..+|+++|.+.+- +-... + +
T Consensus 136 -e~fDrIvSvgmfEhvg~~~--------------~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~ 200 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKEN--------------YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGE 200 (283)
T ss_pred -cccceeeehhhHHHhCccc--------------HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCc
Confidence 34999985 577777411 469999999999999985432 21111 1 1
Q ss_pred --CcccHHHHHHhCCcEEEEEeeCCCC
Q 014642 174 --CKWHIEELARKHSLLRLDCVQFRKE 198 (421)
Q Consensus 174 --~sWnI~~LAa~aGL~L~~~~~F~~~ 198 (421)
....|.+.+.++|+.+.....|.+.
T Consensus 201 lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 201 LPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred CCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 3356777889999999998888865
No 100
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.53 E-value=2.9 Score=44.80 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=78.0
Q ss_pred HHHHhCCC--EEEeecccCCcCcccccccCcccEEEEcCCCCCC--CCCcc------cHHHHHHhHHHHHHHHHhhHhcc
Q 014642 88 DTLKKLGA--SIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGF--HGKEE------DDEVIRMHMSLVEGFFRNASGML 157 (421)
Q Consensus 88 ~~Lr~~Gv--~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~--~GkEd------~~~~I~~nr~LL~~FF~SA~~lL 157 (421)
.-|.++|+ +|.-+-|+..+.... +. ..||||.-+=|+.|. .+|.. ....|..+..|=+..|.+|.+++
T Consensus 284 ~n~~rlGv~ntiv~n~D~~ef~~~~-~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv 361 (460)
T KOG1122|consen 284 ANLHRLGVTNTIVSNYDGREFPEKE-FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV 361 (460)
T ss_pred HHHHHhCCCceEEEccCcccccccc-cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc
Confidence 33445554 466667777654322 22 389999999999992 22222 23567778888889999999999
Q ss_pred CCCCeEEEEecCCCC-cCcccHHHHHHhC-CcEEEEEeeCCCC
Q 014642 158 RPRGEVHVSHKTTAP-FCKWHIEELARKH-SLLRLDCVQFRKE 198 (421)
Q Consensus 158 ~~~GeIHVTLk~g~P-Y~sWnI~~LAa~a-GL~L~~~~~F~~~ 198 (421)
++||-|.-+-|+-.| -|.|.|..+-++. .+.|....++-..
T Consensus 362 ~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~ 404 (460)
T KOG1122|consen 362 KAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGG 404 (460)
T ss_pred cCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCC
Confidence 999999999998766 4789998755555 8999888665443
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=89.19 E-value=1.2 Score=42.65 Aligned_cols=106 Identities=22% Similarity=0.309 Sum_probs=70.1
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
-.++++||-||-|-==+|..|+...+....++ +.|..++|.+ .|+.||+.+.-.++.++++ |+..-.. ..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~~----~~ 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGWP----EE 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTTG----GG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHH---HHHHHHHHhccCceeEEEc-chhhccc----cC
Confidence 45688999999998778888888776432243 6676677765 4888999887778888887 5543211 24
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
..||+|+.+.--.. + -. .++ +.|++||.+.+-+.++
T Consensus 140 apfD~I~v~~a~~~----------i--p~----~l~----~qL~~gGrLV~pi~~~ 175 (209)
T PF01135_consen 140 APFDRIIVTAAVPE----------I--PE----ALL----EQLKPGGRLVAPIGQG 175 (209)
T ss_dssp -SEEEEEESSBBSS--------------H----HHH----HTEEEEEEEEEEESSS
T ss_pred CCcCEEEEeeccch----------H--HH----HHH----HhcCCCcEEEEEEccC
Confidence 68999999863321 1 11 222 3689999999999874
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.01 E-value=3.7 Score=41.14 Aligned_cols=104 Identities=24% Similarity=0.389 Sum_probs=76.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCcccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk 113 (421)
+.+.+||=.|=|.=+.|.+||+..|+.-.| ++||-.++-. .-|.+|+.+. -++ +++.. -|+++-..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~---k~A~~Nl~~~-~l~d~v~~~~-~Dv~~~~~----- 160 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFA---KTARENLSEF-GLGDRVTLKL-GDVREGID----- 160 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHH---HHHHHHHHHh-ccccceEEEe-cccccccc-----
Confidence 457899999999999999999998764455 4677666554 4589999886 222 33322 45555432
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
...||.|+-+-|-. ..+...+.++|+|+|.+.+=+.+-
T Consensus 161 ~~~vDav~LDmp~P-------------------W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 161 EEDVDAVFLDLPDP-------------------WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccccCEEEEcCCCh-------------------HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 24899999999865 367788999999999988776554
No 103
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.90 E-value=4 Score=40.04 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=61.1
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH-GVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vlh-gVDATkL~~~~~Lk~~ 115 (421)
+..+||=||=|.=.+++.|++. +..|+|. |..++..+ .++.+++. .|+.|.. ..|+.... + ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~av--D~s~~ai~---~~~~~~~~---~~l~v~~~~~D~~~~~----~-~~ 183 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAV--DINQQSLE---NLQEIAEK---ENLNIRTGLYDINSAS----I-QE 183 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEE--ECCHHHHH---HHHHHHHH---cCCceEEEEechhccc----c-cC
Confidence 3459999999988888888874 3456555 53333333 13334332 3332221 22443321 2 46
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
.||.|+-++-..- .+...+..+++.+.++|+++|.+.+
T Consensus 184 ~fD~I~~~~vl~~------------l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMF------------LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhh------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7999998864221 1234466889999999999999554
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=88.85 E-value=5 Score=37.13 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=60.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++.+||=||-|.=.++..|++..+ .+++ .|..+++.+ .+.+|+..+.-.++.+..+ |+.+. . ....
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~--vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~--~~~~ 143 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFS--VERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--W--PAYA 143 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEE--EeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--C--CcCC
Confidence 4568999999998777877776642 4544 443344443 3556665542223454444 44321 1 1236
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.||+|+.+.+... + . .....+|+++|.+.+...
T Consensus 144 ~fD~I~~~~~~~~----------~------~----~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPE----------I------P----RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchh----------h------h----HHHHHhcCCCcEEEEEEc
Confidence 7999999864221 1 1 123468999999998876
No 105
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=88.80 E-value=5.6 Score=39.54 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=84.2
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
+||=+|=|.=-=|.+|+.+.. ..+|+||=... +.|. -|+.|.+.+ |+.-++.|+. ++-. .+++ +||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~---~l~~~~~~~~-dlf~--~~~~-~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERN---GLVRVLVVQS-DLFE--PLRG-KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHc---CCccEEEEee-eccc--ccCC-ceeE
Confidence 799999998888888888764 35888886654 3332 245565443 3211223333 3222 1233 8999
Q ss_pred EEEcCCCCCCCCCcccHH---------HHH--HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC-c
Q 014642 120 IIFNFPHAGFHGKEEDDE---------VIR--MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS-L 187 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~---------~I~--~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG-L 187 (421)
||+|=|=+-....+.... .+. .-.+++..|+..+..+|+++|-+.+-+-.++. =.|+++-...| +
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~ 256 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFF 256 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCc
Confidence 999999987531111110 010 13568899999999999999999998875431 13455666666 4
Q ss_pred EEEEE
Q 014642 188 LRLDC 192 (421)
Q Consensus 188 ~L~~~ 192 (421)
..+..
T Consensus 257 ~~v~~ 261 (280)
T COG2890 257 EIVET 261 (280)
T ss_pred eEEEE
Confidence 43433
No 106
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=88.63 E-value=4.1 Score=37.06 Aligned_cols=102 Identities=20% Similarity=0.286 Sum_probs=64.0
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=||=|.=+++..|++... ...++++-.+ .+..+. +..++. ..+.+ ...|++.+. +....|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~--~~~~~~---~~~~~~----~~~~~-~~~d~~~~~----~~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDIS--AGMLAQ---AKTKLS----ENVQF-ICGDAEKLP----LEDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeCh--HHHHHH---HHHhcC----CCCeE-EecchhhCC----CCCCce
Confidence 36899999999999999988753 3456665543 222211 111111 13343 335666543 235679
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
|.||.++..--. .+ ...++..+..+|+++|.+.++..
T Consensus 100 D~vi~~~~l~~~---~~-----------~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 100 DLIVSNLALQWC---DD-----------LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eEEEEhhhhhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 999998753321 11 23688999999999999998754
No 107
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=88.36 E-value=0.19 Score=50.40 Aligned_cols=158 Identities=21% Similarity=0.291 Sum_probs=77.5
Q ss_pred cccccceeeeccCCCCeEEEEecCChhHHHH--HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEe
Q 014642 24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFA--LSQKFGSASNICASSLDSYETVVKKFKEARSNLDT--LKKLGASIIH 99 (421)
Q Consensus 24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlS--La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~--Lr~~Gv~Vlh 99 (421)
|..++++||..++.+++||=+ ||++=+ ++-+.+.+.. +|+.|.-...++ .+++|+.. |....++. .
T Consensus 110 DqR~nR~~v~~~~~gkrvLnl----FsYTGgfsv~Aa~gGA~~--v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~-~ 179 (286)
T PF10672_consen 110 DQRENRKWVRKYAKGKRVLNL----FSYTGGFSVAAAAGGAKE--VVSVDSSKRALE---WAKENAALNGLDLDRHRF-I 179 (286)
T ss_dssp GGHHHHHHHHHHCTTCEEEEE----T-TTTHHHHHHHHTTESE--EEEEES-HHHHH---HHHHHHHHTT-CCTCEEE-E
T ss_pred HHHhhHHHHHHHcCCCceEEe----cCCCCHHHHHHHHCCCCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEE-E
Confidence 556789999999999999965 665432 2222333433 457776444443 25666432 22222222 2
Q ss_pred ecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHH
Q 014642 100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIE 179 (421)
Q Consensus 100 gVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~ 179 (421)
.-|+-+.-... -+..+||.||.+=|-.. +++.+ ..+...+| +..|.++|+++|.+.++.|... .+.=.+.
T Consensus 180 ~~Dvf~~l~~~-~~~~~fD~IIlDPPsF~-k~~~~---~~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~ 249 (286)
T PF10672_consen 180 QGDVFKFLKRL-KKGGRFDLIILDPPSFA-KSKFD---LERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLL 249 (286)
T ss_dssp ES-HHHHHHHH-HHTT-EEEEEE--SSEE-SSTCE---HHHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHH
T ss_pred ecCHHHHHHHH-hcCCCCCEEEECCCCCC-CCHHH---HHHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHH
Confidence 34665421111 13578999999999876 45543 22334444 4668889999999988888653 2211123
Q ss_pred HHHHhC--CcEEEEEeeCCCCCCCC
Q 014642 180 ELARKH--SLLRLDCVQFRKEDYPG 202 (421)
Q Consensus 180 ~LAa~a--GL~L~~~~~F~~~~YPG 202 (421)
+..+++ .+.+++. --.+++||.
T Consensus 250 ~~~~~~a~~~~~~~~-~~~p~df~~ 273 (286)
T PF10672_consen 250 EAVAEAAREVEFIER-LGQPPDFPD 273 (286)
T ss_dssp HHHHHHHHHCEEEEE-EE-------
T ss_pred HHHHHhCccceEeee-ecccccccc
Confidence 322322 3444433 236677875
No 108
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.97 E-value=6.3 Score=37.07 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=||-|.=.+|..|++..+....+++ .|-.+++.+ .++.|++.+.-.++++. .-|+.... ....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~---~a~~~l~~~g~~~v~~~-~gd~~~~~----~~~~ 144 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAE---KAKKTLKKLGYDNVEVI-VGDGTLGY----EENA 144 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHH---HHHHHHHHcCCCCeEEE-ECCcccCC----CcCC
Confidence 46789999999999999999988754344544 554444543 35566654432234433 34554432 1346
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
.||+|+.+.- .+. + ... ..+.|+++|.+.+.+.+
T Consensus 145 ~fD~I~~~~~------~~~----~------~~~----l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 145 PYDRIYVTAA------GPD----I------PKP----LIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CcCEEEECCC------ccc----c------hHH----HHHhhCCCcEEEEEEcC
Confidence 8999998631 110 1 112 23479999999998744
No 109
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=87.18 E-value=7 Score=36.28 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=69.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.+..+||=||=|.=.++..|++. +..|++.-.+ +++.. .+..++..... ..+. ..-.|+..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s--~~~i~---~a~~~~~~~~~~~~i~-~~~~d~~~~~------- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDIS--EQMVQ---MARNRAQGRDVAGNVE-FEVNDLLSLC------- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHHHhcCCCCceE-EEECChhhCC-------
Confidence 35689999999988899888864 3356655443 22222 13333322111 1222 2234555442
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----------------------
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------------------- 171 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------------- 171 (421)
..||.|+..+...-. .. .-+...+..+..++++ .+.|+.....
T Consensus 118 ~~fD~ii~~~~l~~~-~~-----------~~~~~~l~~i~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T TIGR02021 118 GEFDIVVCMDVLIHY-PA-----------SDMAKALGHLASLTKE--RVIFTFAPKTAWLAFLKMIGELFPGSSRATSAY 183 (219)
T ss_pred CCcCEEEEhhHHHhC-CH-----------HHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHhhCcCcccccceE
Confidence 679999986553221 00 1123344455555653 3444543221
Q ss_pred CcCcccHHHHHHhCCcEEEEEeeCC
Q 014642 172 PFCKWHIEELARKHSLLRLDCVQFR 196 (421)
Q Consensus 172 PY~sWnI~~LAa~aGL~L~~~~~F~ 196 (421)
++...+++.+++.+|+.++.+..+.
T Consensus 184 ~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 184 LHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EecHHHHHHHHHHcCceeeeeeccc
Confidence 1233457778888888888775443
No 110
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.74 E-value=5.8 Score=37.98 Aligned_cols=77 Identities=13% Similarity=0.318 Sum_probs=49.1
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc-----
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL----- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L----- 112 (421)
+.+|+.|= . .-.+++|+.+..+.+|++++.+. +.+ ++..++|+..|.++ .+.+|.++......+
T Consensus 3 k~~lItGa-~-gIG~~la~~l~~G~~Vv~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGA-G-GIGQAIARRVGAGKKVLLADYNE-ENL-------EAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECC-C-hHHHHHHHHHhCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 45777784 4 57777787776677899887753 222 22345566667654 577898886543222
Q ss_pred ccCcccEEEEcCC
Q 014642 113 SKRKFDRIIFNFP 125 (421)
Q Consensus 113 k~~~FDrIIFNFP 125 (421)
...++|.||.|--
T Consensus 73 ~~g~id~li~nAG 85 (275)
T PRK06940 73 TLGPVTGLVHTAG 85 (275)
T ss_pred hcCCCCEEEECCC
Confidence 1256899998853
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=86.63 E-value=3.8 Score=42.70 Aligned_cols=105 Identities=22% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.+..+||=||=|.=.++..|++.. ..|+|. |-..++.++ +.+ +.. .....+...|+.... ..+..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~---~~v~gi--D~s~~~l~~------a~~-~~~~~~~i~~~~~d~~~~~--~~~~~ 101 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA---GQVIAL--DFIESVIKK------NES-INGHYKNVKFMCADVTSPD--LNISD 101 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC---CEEEEE--eCCHHHHHH------HHH-HhccCCceEEEEecccccc--cCCCC
Confidence 345699999999999999999863 356554 432333321 111 111 122233445665432 22345
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..||.|+.+++..=. ...-+..+++.+..+|+++|.|.+.
T Consensus 102 ~~fD~I~~~~~l~~l------------~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 102 GSVDLIFSNWLLMYL------------SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCEEEEehhhhHHhC------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 789999999874322 1223568889999999999998775
No 112
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=85.91 E-value=9.9 Score=37.52 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=61.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~~ 115 (421)
++.+||=||=|.=..+.++++ +| +..++|.-.+.. .+ ..+++|+..- .....+. ...| +. .....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~-al----~~a~~n~~~n-~~~~~~~~~~~~---~~---~~~~~ 224 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL-AV----ESARKNAELN-QVSDRLQVKLIY---LE---QPIEG 224 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH-HH----HHHHHHHHHc-CCCcceEEEecc---cc---cccCC
Confidence 467999999999777777775 34 457888877643 22 1345565421 1111111 1112 11 11246
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
+||.|+.|.. . .-+..++..+..+|+|+|.+.++-.
T Consensus 225 ~fDlVvan~~--~---------------~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 225 KADVIVANIL--A---------------EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CceEEEEecC--H---------------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999999963 1 1134677888999999999988743
No 113
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=85.74 E-value=3 Score=41.18 Aligned_cols=130 Identities=21% Similarity=0.347 Sum_probs=79.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++.+||=.|-|.=|+|.+|++..+..-.| .|||-.++-.+ .|..|++...-.+...++.-|+.+-.-...+ ..
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~---~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~ 112 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAE---KARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ES 112 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHH---HHHHHHHHTTCCTTEEEEES-GGCG--STT--TT
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHH---HHHHHHHHcCCCCCceeEecceecccccccc-cC
Confidence 467899999999999999999998754344 46776665543 4878877654334445666676542221111 36
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhcc-CCCCeEEEEecCCCCcCcccHH---HHHHhCCcEEEE
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGML-RPRGEVHVSHKTTAPFCKWHIE---ELARKHSLLRLD 191 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL-~~~GeIHVTLk~g~PY~sWnI~---~LAa~aGL~L~~ 191 (421)
.+|.|+-+-|..- ....+|.+.| +++|.|.+=+..-+ |+. +..++.||..++
T Consensus 113 ~~DavfLDlp~Pw-------------------~~i~~~~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 113 DFDAVFLDLPDPW-------------------EAIPHAKRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIE 168 (247)
T ss_dssp SEEEEEEESSSGG-------------------GGHHHHHHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEE
T ss_pred cccEEEEeCCCHH-------------------HHHHHHHHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeE
Confidence 7999999999875 3355677888 77787766543321 222 233346887766
Q ss_pred EeeC
Q 014642 192 CVQF 195 (421)
Q Consensus 192 ~~~F 195 (421)
.+.-
T Consensus 169 ~~Ev 172 (247)
T PF08704_consen 169 TVEV 172 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 114
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=85.61 E-value=1.8 Score=36.87 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=76.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
....+||=||=|.=.|+..|++. +.+++++-.. +.+.++ ..-....+ ++.. .....+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~--~~~~~~------------~~~~~~~~--~~~~----~~~~~~ 77 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDIS--PQMIEK------------RNVVFDNF--DAQD----PPFPDG 77 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESS--HHHHHH------------TTSEEEEE--ECHT----HHCHSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHhh------------hhhhhhhh--hhhh----hhcccc
Confidence 45679999999999999999664 3366655443 333332 11111111 1111 122457
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC---------------------CcC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA---------------------PFC 174 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------------PY~ 174 (421)
.||.|+.+ ++=. - +. + ...+++....+|+|+|.+.|+..... .|+
T Consensus 78 ~fD~i~~~--~~l~-~-------~~-d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (161)
T PF13489_consen 78 SFDLIICN--DVLE-H-------LP-D---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFS 143 (161)
T ss_dssp SEEEEEEE--SSGG-G-------SS-H---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBB
T ss_pred chhhHhhH--HHHh-h-------cc-c---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCC
Confidence 89999998 3321 1 11 1 55888889999999999999886531 134
Q ss_pred cccHHHHHHhCCcEEEE
Q 014642 175 KWHIEELARKHSLLRLD 191 (421)
Q Consensus 175 sWnI~~LAa~aGL~L~~ 191 (421)
.+.+..+++++||.+++
T Consensus 144 ~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 144 PDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 56888999999998875
No 115
>PLN02823 spermine synthase
Probab=84.70 E-value=2.9 Score=42.94 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
.++||++|=|+-+-++-++++. +...|++--+|.. -++.++|-.. +-..|..-.++|+.+ ||-+.-+. ..++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~~---~~~~ 176 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELEK---RDEK 176 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHhh---CCCC
Confidence 4689999999998888787754 3457888888742 2333333211 111234445655543 44442211 2467
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHH-hhHhccCCCCeEEEE
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFR-NASGMLRPRGEVHVS 166 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~-SA~~lL~~~GeIHVT 166 (421)
||.||.+.+..-..|. .....-..||+ .+...|+++|-+.+-
T Consensus 177 yDvIi~D~~dp~~~~~--------~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLADPVEGGP--------CYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ccEEEecCCCccccCc--------chhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999764211011 01222358998 899999999976543
No 116
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=84.09 E-value=2.7 Score=44.22 Aligned_cols=164 Identities=22% Similarity=0.240 Sum_probs=93.3
Q ss_pred cccccceeeeccCCCCeEEEEecCChhHHHHH--HHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CE-EE
Q 014642 24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFAL--SQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLG-AS-II 98 (421)
Q Consensus 24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~G-v~-Vl 98 (421)
|..++.+|+..+..++++|=+ ||++=+. +-+.+.+..+ |+-| |...|. -|++|++ |.... .+ -+
T Consensus 204 DqR~~R~~l~~~~~GkrvLNl----FsYTGgfSv~Aa~gGA~~v--t~VD~S~~al~----~a~~N~~-LNg~~~~~~~~ 272 (393)
T COG1092 204 DQRDNRRALGELAAGKRVLNL----FSYTGGFSVHAALGGASEV--TSVDLSKRALE----WARENAE-LNGLDGDRHRF 272 (393)
T ss_pred HhHHHHHHHhhhccCCeEEEe----cccCcHHHHHHHhcCCCce--EEEeccHHHHH----HHHHHHH-hcCCCccceee
Confidence 456778888888889999866 5554332 2233334343 3445 333332 2566653 33221 11 22
Q ss_pred eecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc--
Q 014642 99 HGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW-- 176 (421)
Q Consensus 99 hgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW-- 176 (421)
..-||=+.-+...-++.+||.||.+=|-.+. ++.+..+..+.+..|+. -|.++|+|+|.+.+..|... ...=
T Consensus 273 i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r-~k~~~~~~~rdy~~l~~----~~~~iL~pgG~l~~~s~~~~-~~~~~f 346 (393)
T COG1092 273 IVGDVFKWLRKAERRGEKFDLIILDPPSFAR-SKKQEFSAQRDYKDLND----LALRLLAPGGTLVTSSCSRH-FSSDLF 346 (393)
T ss_pred ehhhHHHHHHHHHhcCCcccEEEECCccccc-CcccchhHHHHHHHHHH----HHHHHcCCCCEEEEEecCCc-cCHHHH
Confidence 2334444333323345799999999999985 55543444455555543 47889999999998888763 3322
Q ss_pred --cHHHHHHhCCcEEEEE-eeCCCCCCCCCc
Q 014642 177 --HIEELARKHSLLRLDC-VQFRKEDYPGYS 204 (421)
Q Consensus 177 --nI~~LAa~aGL~L~~~-~~F~~~~YPGY~ 204 (421)
.|..-|...+...... ..-.+.|+|...
T Consensus 347 ~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 347 LEIIARAAAAAGRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred HHHHHHHHHhcCCcEEEeeccCCCCCccccc
Confidence 2334555555544444 466666777443
No 117
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=84.08 E-value=6 Score=37.54 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=66.6
Q ss_pred eeccCCCCeEEEEecCChhHHHH-HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFA-LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS 110 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~ 110 (421)
+.....+.+||=+|=|.=+|++. |++. +..|++- |...++.+ .++.|++.+.-..+.++ .-|+.+.-..
T Consensus 48 l~~~~~~~~vLDl~~GsG~l~l~~lsr~---a~~V~~v--E~~~~a~~---~a~~Nl~~~~~~~v~~~-~~D~~~~l~~- 117 (199)
T PRK10909 48 LAPVIVDARCLDCFAGSGALGLEALSRY---AAGATLL--EMDRAVAQ---QLIKNLATLKAGNARVV-NTNALSFLAQ- 117 (199)
T ss_pred HhhhcCCCEEEEcCCCccHHHHHHHHcC---CCEEEEE--ECCHHHHH---HHHHHHHHhCCCcEEEE-EchHHHHHhh-
Confidence 33334567898887777777764 4443 3355554 54343332 46778777653345554 3466542111
Q ss_pred ccccCcccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 111 ELSKRKFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 111 ~Lk~~~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
....||.|++|=| +.|. ..+++..... ..+|.++|-|+|.+...
T Consensus 118 --~~~~fDlV~~DPPy~~g~------------~~~~l~~l~~--~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 118 --PGTPHNVVFVDPPFRKGL------------LEETINLLED--NGWLADEALIYVESEVE 162 (199)
T ss_pred --cCCCceEEEECCCCCCCh------------HHHHHHHHHH--CCCcCCCcEEEEEecCC
Confidence 1346999999999 5542 2334443332 46789999999997653
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=82.98 E-value=4.1 Score=39.15 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=67.9
Q ss_pred eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHS 110 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~ 110 (421)
+......++||=||=|-=.=+++|++..+.+..|++.-.|. +. +.-|++|++...-. .++++.| ||.+.-...
T Consensus 63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~---~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l 136 (234)
T PLN02781 63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EA---YEVGLEFIKKAGVDHKINFIQS-DALSALDQL 136 (234)
T ss_pred HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HH---HHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHH
Confidence 35556788999999876665677777765444566555553 22 23467777654321 2444444 776532110
Q ss_pred c--cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 111 E--LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 111 ~--Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
. .....||.|..+-+. .-...+|.-+..+|++||.|.+.
T Consensus 137 ~~~~~~~~fD~VfiDa~k-----------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK-----------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HhCCCCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 0 013589999886432 11236788888999999987763
No 119
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=81.90 E-value=21 Score=32.79 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEE-eecccCCcCccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SII-HGVDATEMKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~Vl-hgVDATkL~~~~~L 112 (421)
.+..+||=||-|.=.|+..|++.. ..++++-.+ .+.+ + .++.++.. .|. .|- ...| +..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s-~~~i-~---~a~~~~~~---~~~~~~i~~~~~d---~~~---- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDIS-PQMV-E---EARERAPE---AGLAGNITFEVGD---LES---- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECC-HHHH-H---HHHHHHHh---cCCccCcEEEEcC---chh----
Confidence 346799999999888999998753 245554443 3332 2 13333322 222 222 2233 221
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC---------------------
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------------- 171 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------------- 171 (421)
....||.|+.+..-.-+ ..+ . +...++.+..++. |.+.|+.....
T Consensus 124 ~~~~fD~v~~~~~l~~~-~~~----~-------~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHY-PQE----D-------AARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGGLFPGPSRTTR 189 (230)
T ss_pred ccCCcCEEEEcchhhcC-CHH----H-------HHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhccccCCccCCCC
Confidence 13679999987552111 001 0 1233333334443 44444443211
Q ss_pred --CcCcccHHHHHHhCCcEEEEEeeCCCC
Q 014642 172 --PFCKWHIEELARKHSLLRLDCVQFRKE 198 (421)
Q Consensus 172 --PY~sWnI~~LAa~aGL~L~~~~~F~~~ 198 (421)
.++.-++..+.+.+||.+.+..++...
T Consensus 190 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 190 IYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred ccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 122345778888999999998877643
No 120
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=81.59 E-value=45 Score=31.81 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=59.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHH----HH---H-hCCCEEE-eecccCCcC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD----TL---K-KLGASII-HGVDATEMK 107 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~----~L---r-~~Gv~Vl-hgVDATkL~ 107 (421)
+..+||.+|.|.=--++.||++ +.+|||.-+- ...+ ++- .++.++. .+ + ..+..|- +-.|..++.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S-~~Ai-~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELS-EIAV-EQF-FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCC-HHHH-HHH-HHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 4569999999999999999974 4566665332 2222 210 0011110 00 0 0111222 344555554
Q ss_pred cccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEec
Q 014642 108 EHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHK 168 (421)
Q Consensus 108 ~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk 168 (421)
.. ...+||.|+=. +. .+..+..+-..++++...+|+|+|. +.+|+.
T Consensus 108 ~~---~~~~fD~i~D~----~~--------~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 AA---DLGPVDAVYDR----AA--------LIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cc---cCCCcCEEEec----hh--------hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 21 12346655321 10 1122455567899999999999997 556664
No 121
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.40 E-value=11 Score=37.09 Aligned_cols=96 Identities=17% Similarity=0.313 Sum_probs=55.0
Q ss_pred CCCeEEEEecCChhHH-HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFS-FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+++||+.|=|..-.. ..||++.| ...|++|... .+.++.++++|+......+-.++.+... ...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~------------~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~~g 234 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS------------PRSLSLAREMGADKLVNPQNDDLDHYKA-EKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC------------HHHHHHHHHcCCcEEecCCcccHHHHhc-cCC
Confidence 5789999998766533 44567765 3467777543 1246677788986554322222222111 123
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
.||.| |+. +|. ..-+..+.++|+++|.|.+.
T Consensus 235 ~~D~v-id~--~G~-----------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 235 YFDVS-FEV--SGH-----------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCEE-EEC--CCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 47855 564 452 02344566788999987654
No 122
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=81.20 E-value=3.7 Score=42.55 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=74.7
Q ss_pred eccCCCCeE--EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642 33 MHYSSKHQI--LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS 110 (421)
Q Consensus 33 ~~Yss~~rI--LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~ 110 (421)
..+..+.+| +.-|=|=||+..|... .+. |+|.-+.... |.-.++|+..=+-.+....+.-||..+....
T Consensus 184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~g---~~~-V~A~diNP~A-----~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 184 ELVKEGETVLDMFAGVGPFSIPIAKKG---RPK-VYAIDINPDA-----VEYLKENIRLNKVEGRVEPILGDAREVAPEL 254 (341)
T ss_pred hhhcCCCEEEEccCCcccchhhhhhcC---Cce-EEEEecCHHH-----HHHHHHHHHhcCccceeeEEeccHHHhhhcc
Confidence 334445554 3567788877766542 233 9998876422 1223445432222242335555777765432
Q ss_pred ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-CcCcc---cHHHHHHhCC
Q 014642 111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-PFCKW---HIEELARKHS 186 (421)
Q Consensus 111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-PY~sW---nI~~LAa~aG 186 (421)
..|||||.|.|+... .|...|..+++++|-||.=...-+ .-..| .|...|...|
T Consensus 255 ----~~aDrIim~~p~~a~------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~ 312 (341)
T COG2520 255 ----GVADRIIMGLPKSAH------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG 312 (341)
T ss_pred ----ccCCEEEeCCCCcch------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence 789999999999653 788889999999999998765432 11123 3444555665
Q ss_pred c
Q 014642 187 L 187 (421)
Q Consensus 187 L 187 (421)
+
T Consensus 313 ~ 313 (341)
T COG2520 313 Y 313 (341)
T ss_pred C
Confidence 4
No 123
>PRK06202 hypothetical protein; Provisional
Probab=80.52 E-value=31 Score=32.41 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.+..+||=||=|.=.++..|++... .+.+.-.|..|-..++.+. +..+ +...++.+.. +|+..+.. ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~---a~~~---~~~~~~~~~~-~~~~~l~~----~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF---ARAN---PRRPGVTFRQ-AVSDELVA----EG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH---HHhc---cccCCCeEEE-Eecccccc----cC
Confidence 4567999998877777777876431 1223334445543333332 2222 2233555544 45655543 34
Q ss_pred CcccEEEEcCC
Q 014642 115 RKFDRIIFNFP 125 (421)
Q Consensus 115 ~~FDrIIFNFP 125 (421)
..||.|+.|+-
T Consensus 128 ~~fD~V~~~~~ 138 (232)
T PRK06202 128 ERFDVVTSNHF 138 (232)
T ss_pred CCccEEEECCe
Confidence 78999999975
No 124
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=80.33 E-value=29 Score=34.61 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=+|=|.=.||+.||+. +..++|.-.+ ....+ .++.|++...-..+.+ ...|+.++... ....|
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s--~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~---~~~~~ 241 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQLTGIEIS--AEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA---QGEVP 241 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh---cCCCC
Confidence 468988888888888888874 2456665444 33322 3666765543223444 34577665321 12469
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRK 197 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~ 197 (421)
|.||.|=|..|. + ..++ ..+.. +.+.+-|+|+.....- .-++..| .||.+.+..+||
T Consensus 242 D~Vv~dPPr~G~-~-----------~~~~-~~l~~----~~~~~ivyvsc~p~t~--~rd~~~l---~~y~~~~~~~~D- 298 (315)
T PRK03522 242 DLVLVNPPRRGI-G-----------KELC-DYLSQ----MAPRFILYSSCNAQTM--AKDLAHL---PGYRIERVQLFD- 298 (315)
T ss_pred eEEEECCCCCCc-c-----------HHHH-HHHHH----cCCCeEEEEECCcccc--hhHHhhc---cCcEEEEEEEec-
Confidence 999999998774 1 1111 11111 3555666666544332 1244444 699999999998
Q ss_pred CCCCCCcc
Q 014642 198 EDYPGYSN 205 (421)
Q Consensus 198 ~~YPGY~h 205 (421)
.||.=.|
T Consensus 299 -mFP~T~H 305 (315)
T PRK03522 299 -MFPHTAH 305 (315)
T ss_pred -cCCCCCe
Confidence 5775443
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=80.28 E-value=15 Score=34.68 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...+||=+|=|.=.++..|++. +..+++.-+. .++.+. +..+.. ... +...|+..+. +....
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s--~~~l~~---a~~~~~-----~~~-~~~~d~~~~~----~~~~~ 103 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLS--PPMLAQ---ARQKDA-----ADH-YLAGDIESLP----LATAT 103 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhCC-----CCC-EEEcCcccCc----CCCCc
Confidence 3568999998887788888764 3466666443 222221 222211 112 2345666543 34568
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
||.|+-|++.--. .| +..++..+..+|+|+|.+.++....
T Consensus 104 fD~V~s~~~l~~~---~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 104 FDLAWSNLAVQWC---GN-----------LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEEEEECchhhhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999875321 11 2467888889999999999986543
No 126
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=80.20 E-value=11 Score=37.62 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=62.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
++.+||=||=|.=++|.+||+. +.+|+|.=.. ++..+ | | -+..+ +.|+.|=| .+...... ...+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~s--e~~I~-~--A--k~ha~-e~gv~i~y--~~~~~edl-~~~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDAS--EKPIE-V--A--KLHAL-ESGVNIDY--RQATVEDL-ASAGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCC--hHHHH-H--H--HHhhh-hccccccc--hhhhHHHH-HhcCCC
Confidence 5679999999999999999986 3577765332 11111 0 0 01111 22444222 22222221 112479
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
||.|+.+= +-.|-.=...|.++|.+|++|+|.+.++--+
T Consensus 125 FDvV~cmE--------------VlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 125 FDVVTCME--------------VLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ccEEEEhh--------------HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999752 1123222446999999999999998887655
No 127
>PRK06128 oxidoreductase; Provisional
Probab=78.64 E-value=26 Score=33.93 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
+++||+.| |+=..-.++++.+. .+.+|+.+..+.... +..+.++.|+..|..+ .+.+|.++......+
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQ------DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchH------HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46899998 44445556665542 345787776653221 1233455667667554 467888886543222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.||.|=
T Consensus 128 ~~~~~g~iD~lV~nA 142 (300)
T PRK06128 128 AVKELGGLDILVNIA 142 (300)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689999885
No 128
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=78.60 E-value=3.4 Score=41.05 Aligned_cols=137 Identities=23% Similarity=0.387 Sum_probs=83.0
Q ss_pred ecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEcC
Q 014642 45 GEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNF 124 (421)
Q Consensus 45 GEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNF 124 (421)
|-|. -+..||...+....|+|.-... .+......|++.|--..+.+.. .|++++.... ....||+|+-+=
T Consensus 95 apGg--Kt~~la~~~~~~g~i~A~D~~~-----~Rl~~l~~~~~r~g~~~v~~~~-~D~~~~~~~~--~~~~fd~VlvDa 164 (283)
T PF01189_consen 95 APGG--KTTHLAELMGNKGEIVANDISP-----KRLKRLKENLKRLGVFNVIVIN-ADARKLDPKK--PESKFDRVLVDA 164 (283)
T ss_dssp TTSH--HHHHHHHHTTTTSEEEEEESSH-----HHHHHHHHHHHHTT-SSEEEEE-SHHHHHHHHH--HTTTEEEEEEEC
T ss_pred CCCC--ceeeeeecccchhHHHHhccCH-----HHHHHHHHHHHhcCCceEEEEe-eccccccccc--cccccchhhcCC
Confidence 4444 4456666665455788765442 2223344555544433444444 7888875432 234799999999
Q ss_pred CCCCCC--CCcc------cHHHHHHhHHHHHHHHHhhHhcc----CCCCeEEEEecCCCCcCcc-cHHH-HHHhCCcEEE
Q 014642 125 PHAGFH--GKEE------DDEVIRMHMSLVEGFFRNASGML----RPRGEVHVSHKTTAPFCKW-HIEE-LARKHSLLRL 190 (421)
Q Consensus 125 PH~G~~--GkEd------~~~~I~~nr~LL~~FF~SA~~lL----~~~GeIHVTLk~g~PY~sW-nI~~-LAa~aGL~L~ 190 (421)
|..|.. .+.. ....+.....+=...+.+|.+++ +++|.+.=+.|+=.|-..- .|+. |.++.++.+.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~ 244 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELV 244 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEE
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEE
Confidence 999941 1111 12244445555567788899999 9999999999987765444 4454 4444466665
Q ss_pred E
Q 014642 191 D 191 (421)
Q Consensus 191 ~ 191 (421)
.
T Consensus 245 ~ 245 (283)
T PF01189_consen 245 P 245 (283)
T ss_dssp C
T ss_pred e
Confidence 4
No 129
>PRK00536 speE spermidine synthase; Provisional
Probab=78.41 E-value=14 Score=36.95 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=60.7
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHh-hhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKK-FKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~K-Y~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
-++||++|=||--=++=+.|+ +.+|+---.|.+ =++.++ .|... ..+..--++|+..+ .+. ..+
T Consensus 73 pk~VLIiGGGDGg~~REvLkh---~~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~-----~~~---~~~ 138 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY---DTHVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQL-----LDL---DIK 138 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc---CCeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehh-----hhc---cCC
Confidence 479999999996655555555 236777777742 233444 34322 25666677777532 111 136
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
+||.||-+=. + . ..||+.+++.|+++|-+.+
T Consensus 139 ~fDVIIvDs~---~-~---------------~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 139 KYDLIICLQE---P-D---------------IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCEEEEcCC---C-C---------------hHHHHHHHHhcCCCcEEEE
Confidence 7999999821 1 0 4899999999999886544
No 130
>PRK13699 putative methylase; Provisional
Probab=77.94 E-value=6.4 Score=37.92 Aligned_cols=93 Identities=12% Similarity=0.180 Sum_probs=58.0
Q ss_pred EEEeecccCCcCcccccccCcccEEEEcCCCC-CCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642 96 SIIHGVDATEMKEHSELSKRKFDRIIFNFPHA-GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC 174 (421)
Q Consensus 96 ~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~-G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~ 174 (421)
++++| ||.++-. .|....+|.||..=|=. |.+...+..-......+.+..+|..+..+|+++|-+.+- .
T Consensus 3 ~l~~g-D~le~l~--~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-------~ 72 (227)
T PRK13699 3 RFILG-NCIDVMA--RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-------Y 72 (227)
T ss_pred eEEec-hHHHHHH--hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-------e
Confidence 34444 7766432 35678899999999885 321111100001123466788999999999998876542 2
Q ss_pred ccc----HHHHHHhCCcEEEEEeeCCCC
Q 014642 175 KWH----IEELARKHSLLRLDCVQFRKE 198 (421)
Q Consensus 175 sWn----I~~LAa~aGL~L~~~~~F~~~ 198 (421)
.|+ +..+..++|+.+......++.
T Consensus 73 ~~~~~~~~~~al~~~GF~l~~~IiW~K~ 100 (227)
T PRK13699 73 GWNRVDRFMAAWKNAGFSVVGHLVFTKN 100 (227)
T ss_pred ccccHHHHHHHHHHCCCEEeeEEEEECC
Confidence 232 334567889999988887754
No 131
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=76.99 E-value=2.9 Score=43.58 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=39.3
Q ss_pred ccCCCCeEEEEecCChhHHHHH--HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642 34 HYSSKHQILLVGEGDFSFSFAL--SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE 108 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~ 108 (421)
.|-.++++.++||++..++++- .+.+|-..-.++|.+.+.+.+.+ -++.|.. ++.|+.+-|...|.+
T Consensus 286 ~~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~-------~~~~l~~-~~~v~~~~D~~~l~~ 354 (427)
T PRK02842 286 ELLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAA-------ELALLPD-GVRIVEGQDVERQLD 354 (427)
T ss_pred hhcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHH-------HHHhccC-CCEEEECCCHHHHHH
Confidence 3446789999999986665544 34366544556666665544322 1233322 666766666655543
No 132
>PRK07402 precorrin-6B methylase; Provisional
Probab=76.51 E-value=30 Score=31.71 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
..+.+||=+|-|.=+++..+++... +..|+|.-.+. ++.+ .+++|++.+.-..++++ .-|+...-. .+ ..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~--~~~~---~a~~n~~~~~~~~v~~~-~~d~~~~~~--~~-~~ 108 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDE--EVVN---LIRRNCDRFGVKNVEVI-EGSAPECLA--QL-AP 108 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCH--HHHH---HHHHHHHHhCCCCeEEE-ECchHHHHh--hC-CC
Confidence 4677999999999999999987643 44677765553 3332 36677776543345544 455543111 11 13
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.+|+|+... + .+ +..+++.+..+|+++|.+.+...
T Consensus 109 ~~d~v~~~~---~----~~-----------~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG---G----RP-----------IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC---C----cC-----------HHHHHHHHHHhcCCCeEEEEEee
Confidence 468876631 1 11 25677888889999999888754
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=76.50 E-value=22 Score=34.52 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
+..+||=||=|.=.++..|++.+........+..|--..+.+. |..+ ..++.++. -|+.+|. +....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~---A~~~-----~~~~~~~~-~d~~~lp----~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY---AAKR-----YPQVTFCV-ASSHRLP----FADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH---HHHh-----CCCCeEEE-eecccCC----CcCCc
Confidence 3468999999988999999887642212233555632322221 2211 12344444 3776653 44678
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHH
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEEL 181 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~L 181 (421)
||.|+.+|-.. +++....+|+|+|.+.+.... |...|++.++
T Consensus 152 fD~I~~~~~~~---------------------~~~e~~rvLkpgG~li~~~p~--~~~l~el~~~ 193 (272)
T PRK11088 152 LDAIIRIYAPC---------------------KAEELARVVKPGGIVITVTPG--PRHLFELKGL 193 (272)
T ss_pred eeEEEEecCCC---------------------CHHHHHhhccCCCEEEEEeCC--CcchHHHHHH
Confidence 99999876310 112345589999998876533 4556666544
No 134
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=76.34 E-value=7.5 Score=39.14 Aligned_cols=115 Identities=21% Similarity=0.328 Sum_probs=70.7
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccC-HHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDS-YETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS-~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
++||++|=||=+.++.++++.. -..+|+--.|. --++.+||-..-.+... .--++|+.+ |+-+.-.. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~-Dg~~~v~~---~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIID-DGVEFLRD---CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEec-cHHHHHHh---CCCcC
Confidence 4999999999999999999864 66888888883 33444444422111111 122333332 33332211 12489
Q ss_pred cEEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc
Q 014642 118 DRIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF 173 (421)
Q Consensus 118 DrIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY 173 (421)
|.||-+--- .|. +. .-+-..||+.|.+.|+++|-+.+- .+.|+
T Consensus 151 DvIi~D~tdp~gp-~~----------~Lft~eFy~~~~~~L~~~Gi~v~q--~~~~~ 194 (282)
T COG0421 151 DVIIVDSTDPVGP-AE----------ALFTEEFYEGCRRALKEDGIFVAQ--AGSPF 194 (282)
T ss_pred CEEEEcCCCCCCc-cc----------ccCCHHHHHHHHHhcCCCcEEEEe--cCCcc
Confidence 999998533 342 11 112368999999999999977666 44453
No 135
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=74.32 E-value=12 Score=38.39 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCeEEEEecC-ChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeecccCCcCcccccc
Q 014642 37 SKHQILLVGEG-DFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 37 s~~rILLVGEG-DFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~VlhgVDATkL~~~~~Lk 113 (421)
...+||=||=| +.-+.+..++.. +..++||-.|... + .-|+.|++.--.+ .+.++...|...+-......
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~A-l----~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQA-L----ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHH-H----HHHHHHHHhccCCcCcEEEEEccchhhhhhccccc
Confidence 45689999999 444444333333 4689999887432 2 2366777653122 35556655655554322113
Q ss_pred cCcccEEEEcCCCCCCCCCccc------HHHHHHhHHH--HHHHHHhhHhccCCCCeEEEEec
Q 014642 114 KRKFDRIIFNFPHAGFHGKEED------DEVIRMHMSL--VEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~------~~~I~~nr~L--L~~FF~SA~~lL~~~GeIHVTLk 168 (421)
..+||.||.|=|.... ..+.. .++...|+.- ...|=..+.+|+.+||++-+-+.
T Consensus 187 ~~~fDlivcNPPf~~s-~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~ 248 (321)
T PRK11727 187 NERFDATLCNPPFHAS-AAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR 248 (321)
T ss_pred CCceEEEEeCCCCcCc-chhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH
Confidence 5689999999998874 22211 1112222110 11222246678889999655443
No 136
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=74.17 E-value=71 Score=29.20 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=44.2
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC-cCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE-MKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk-L~~~~~Lk~~ 115 (421)
++.+||=||=|+=.++..|++..+ .++ +..|..++..+ ..++.|+.++. .|+.. +. .+..+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~--~~~--~giD~s~~~i~----------~a~~~~~~~~~-~d~~~~l~---~~~~~ 74 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ--VRG--YGIEIDQDGVL----------ACVARGVNVIQ-GDLDEGLE---AFPDK 74 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC--CcE--EEEeCCHHHHH----------HHHHcCCeEEE-EEhhhccc---ccCCC
Confidence 456899999999899999987642 334 45564333322 22334666543 45543 21 13457
Q ss_pred cccEEEEcCC
Q 014642 116 KFDRIIFNFP 125 (421)
Q Consensus 116 ~FDrIIFNFP 125 (421)
.||.|+.|.+
T Consensus 75 sfD~Vi~~~~ 84 (194)
T TIGR02081 75 SFDYVILSQT 84 (194)
T ss_pred CcCEEEEhhH
Confidence 8999999965
No 137
>PLN02476 O-methyltransferase
Probab=72.43 E-value=14 Score=37.29 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred ceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcC
Q 014642 29 EKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMK 107 (421)
Q Consensus 29 ~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~ 107 (421)
-.++....+.++||=+|=|-=..|+++|+..+....|++.-.|. +. +.-|+.|++..--. .++++.| ||.+.-
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~---~~~Ar~n~~~aGl~~~I~li~G-dA~e~L 183 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NS---LEVAKRYYELAGVSHKVNVKHG-LAAESL 183 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HH---HHHHHHHHHHcCCCCcEEEEEc-CHHHHH
Confidence 44566677788999999999999999998875443466554443 22 23466776643211 2455554 554421
Q ss_pred ccccc--ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 108 EHSEL--SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 108 ~~~~L--k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..... ....||.|..+=+- .-...+|.-+.++|++||-|.+-
T Consensus 184 ~~l~~~~~~~~FD~VFIDa~K-----------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 184 KSMIQNGEGSSYDFAFVDADK-----------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHhcccCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 11100 13589999987442 12457788888999999998774
No 138
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=71.55 E-value=18 Score=35.02 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=77.5
Q ss_pred eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccC--HHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDS--YETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH 109 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS--~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~ 109 (421)
++-+.++--||=+|=|+==|++++..+-..+.+|+|-.++. ...|.++||+. . +.+-||-.|..+
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~------------~-ii~gda~~l~~~ 109 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV------------N-IINGDAFDLRTT 109 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc------------c-ccccchhhHHHH
Confidence 45566778899999999999999987765677888887764 46677777744 2 566688777754
Q ss_pred cc-cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 110 SE-LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 110 ~~-Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.. .++..||.||---|..-+. .+.-- ..++++...|..+|. .|++.=|
T Consensus 110 l~e~~gq~~D~viS~lPll~~P--------~~~~i----aile~~~~rl~~gg~-lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFP--------MHRRI----AILESLLYRLPAGGP-LVQFTYG 158 (194)
T ss_pred HhhcCCCeeeeEEeccccccCc--------HHHHH----HHHHHHHHhcCCCCe-EEEEEec
Confidence 33 2568899999999988762 11122 344555667777554 4444333
No 139
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=71.50 E-value=14 Score=33.09 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=39.9
Q ss_pred CCEEEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 94 GASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 94 Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
+++++.+ |+.+|. +..+.||.|+.+| +.. ++. + ...+|+.+..+|+|||.+.|.-..
T Consensus 27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~-------~~~-d---~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLR-------NVV-D---RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred ceEEEEe-chhhCC----CCCCCeeEEEecc---hhh-------cCC-C---HHHHHHHHHHHcCcCeEEEEEECC
Confidence 4677776 888874 3467899999875 210 110 1 247889999999999999887554
No 140
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.71 E-value=24 Score=34.59 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=56.3
Q ss_pred cCCCCeEEEEecCChhHH-HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc-cccc
Q 014642 35 YSSKHQILLVGEGDFSFS-FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE-HSEL 112 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~-~~~L 112 (421)
..++++||+.|.|...-. ..+|++.| ...|++++-.. +.++.++++|+...+..+.....+ ...+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~------------~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINS------------EKLALAKSLGAMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCH------------HHHHHHHHcCCceEecCcccCHHHHHHHh
Confidence 346789999998887644 34567765 33466664321 124456777875444333221111 0112
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
....+|.+||+ .+|. ...+..+.++|+++|.|.+-
T Consensus 225 ~~~~~d~~v~d--~~G~-----------------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 225 RELRFDQLILE--TAGV-----------------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCCCCCeEEEE--CCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 33568877887 3442 12344566788999997654
No 141
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=70.35 E-value=30 Score=34.19 Aligned_cols=108 Identities=21% Similarity=0.356 Sum_probs=67.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~ 114 (421)
++++||=||=|-=-+|+.|++..| ...||+ .|--+.+++ -+ .+.+++.|.. -+-.-||.+|. +..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~--~D~s~~ML~---~a---~~k~~~~~~~~i~fv~~dAe~LP----f~D 117 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVG--LDISESMLE---VA---REKLKKKGVQNVEFVVGDAENLP----FPD 117 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEE--EECCHHHHH---HH---HHHhhccCccceEEEEechhhCC----CCC
Confidence 789999998888888999999887 334554 553333332 12 3445554422 22345999885 568
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP 172 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 172 (421)
+.||+|...|=.- ++.. ....++.+..+|+|+|++.|. --++|
T Consensus 118 ~sFD~vt~~fglr----------nv~d----~~~aL~E~~RVlKpgG~~~vl-e~~~p 160 (238)
T COG2226 118 NSFDAVTISFGLR----------NVTD----IDKALKEMYRVLKPGGRLLVL-EFSKP 160 (238)
T ss_pred CccCEEEeeehhh----------cCCC----HHHHHHHHHHhhcCCeEEEEE-EcCCC
Confidence 9999999876222 2221 224556677799999965544 33445
No 142
>PRK07985 oxidoreductase; Provisional
Probab=70.06 E-value=44 Score=32.46 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|++|=+ =....++++.+. .+.+|+.+..+...+-. +.-.+.+++.|..+ .+.+|.++...-..+
T Consensus 49 ~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDA------QDVKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhH------HHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 4689999943 344445554441 35678877654321111 11122344556544 567898886532111
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
.....|.+|.|--
T Consensus 122 ~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 122 AHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1256899998843
No 143
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.68 E-value=20 Score=35.04 Aligned_cols=99 Identities=24% Similarity=0.397 Sum_probs=64.7
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
-+..++||=||=|-==-|.-||+--+ .| +|.|..++|.+ .|+.|++.|.-.+|.|.+|==.+-+. ..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~---~V--~siEr~~~L~~---~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~ 136 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG---RV--VSIERIEELAE---QARRNLETLGYENVTVRHGDGSKGWP-----EE 136 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC---eE--EEEEEcHHHHH---HHHHHHHHcCCCceEEEECCcccCCC-----CC
Confidence 35578999999997655666666543 44 45666677765 48889888877678887762222222 24
Q ss_pred CcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 115 RKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 115 ~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
..||+|+.+ .|.+. +.| .+-|++||.+.+-.-
T Consensus 137 aPyD~I~Vtaaa~~vP--------------~~L--------l~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVP--------------EAL--------LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCC--------------HHH--------HHhcccCCEEEEEEc
Confidence 789999986 22222 122 235889999887765
No 144
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=69.35 E-value=15 Score=35.47 Aligned_cols=109 Identities=18% Similarity=0.292 Sum_probs=57.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.+..+||=||=|.=-.+..|++..+....|++ .|--+.+++. ++..+.......+. +..-||++|. +..+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~--vD~s~~ML~~---a~~k~~~~~~~~i~-~v~~da~~lp----~~d~ 115 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVG--VDISPGMLEV---ARKKLKREGLQNIE-FVQGDAEDLP----FPDN 115 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEE--EES-HHHHHH---HHHHHHHTT--SEE-EEE-BTTB------S-TT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEE--ecCCHHHHHH---HHHHHHhhCCCCee-EEEcCHHHhc----CCCC
Confidence 45679998888887888888888764444554 5633444432 33333322111333 3346888885 4468
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
.||.|..-| |.. ++. + ....++.+..+|+|||.+.|.=.
T Consensus 116 sfD~v~~~f---glr-------n~~-d---~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 116 SFDAVTCSF---GLR-------NFP-D---RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -EEEEEEES----GG-------G-S-S---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEHHh---hHH-------hhC-C---HHHHHHHHHHHcCCCeEEEEeec
Confidence 999999766 321 111 1 23466778889999999776433
No 145
>PRK07806 short chain dehydrogenase; Provisional
Probab=69.29 E-value=32 Score=31.60 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~Lk-- 113 (421)
+++||++|=..| -..+|++.+ ..+.+|++++.+..+.+ +...++|+..|.. ..+..|.++......+-
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRA-------NKVVAEIEAAGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999996543 455555544 23567888776542211 2234456655544 45678999876532221
Q ss_pred ----cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642 114 ----KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH 164 (421)
Q Consensus 114 ----~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH 164 (421)
....|.||.|-..... ...+....++.|-.-....++.+.+.+..+|.|.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~-~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 78 AREEFGGLDALVLNASGGME-SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred HHHhCCCCcEEEECCCCCCC-CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 1468998888632211 1111111122233333344555666665556643
No 146
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=68.62 E-value=14 Score=33.72 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH---hCCCEEEeecccCCcCccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK---KLGASIIHGVDATEMKEHS 110 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr---~~Gv~VlhgVDATkL~~~~ 110 (421)
....+.+||=+|=|-==-++++++.. .+..||+|-++..-++ .+.|++.=. ...+.| ...|-.+-....
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~~l~~------l~~Ni~~N~~~~~~~v~v-~~L~Wg~~~~~~ 113 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNEVLEL------LRRNIELNGSLLDGRVSV-RPLDWGDELDSD 113 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHH------HHHHHHTT--------EE-EE--TTS-HHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccchhhHH------HHHHHHhccccccccccC-cEEEecCccccc
Confidence 34557799999998665666666664 3678999998863333 333443211 111221 122222100011
Q ss_pred ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.+....||.||- . .+-.+.+++..++.....+|+++|.|.++....
T Consensus 114 ~~~~~~~D~Ila------s--------Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 114 LLEPHSFDVILA------S--------DVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHS-SSBSEEEE------E--------S--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccCCEEEE------e--------cccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 234568999973 1 133456778888999999999999999999876
No 147
>PLN03075 nicotianamine synthase; Provisional
Probab=66.63 E-value=58 Score=33.30 Aligned_cols=112 Identities=16% Similarity=0.277 Sum_probs=67.0
Q ss_pred CCCeEEEEecCChhHHH-HHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSF-ALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~ 114 (421)
...+||-||=|..=+|. .|+..+.... .-+.+|..++..+ .|+.++......+-.|- +-.|+.++.. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~--~~~giD~d~~ai~---~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----~l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT--SFHNFDIDPSAND---VARRLVSSDPDLSKRMFFHTADVMDVTE----SL 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC--EEEEEeCCHHHHH---HHHHHhhhccCccCCcEEEECchhhccc----cc
Confidence 56799999999886644 4444443333 4556665555544 35556544232322233 3367776422 13
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
..||.|..+ =-+++ .+++ . ...|+.....|+|||.+.+-...|
T Consensus 194 ~~FDlVF~~-ALi~~-dk~~-------k----~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 194 KEYDVVFLA-ALVGM-DKEE-------K----VKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CCcCEEEEe-ccccc-cccc-------H----HHHHHHHHHhcCCCcEEEEecccc
Confidence 579999888 33343 1121 1 255666778999999999998766
No 148
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=65.98 E-value=16 Score=33.56 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
+++||++|+=+=.|...|.+. +..+.+-+++-. . ...++ ..++.+.|+++... ...
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~---~~~v~~~~~~~~--------~----~~~~~~~~~~~~~f~~~~~~--------~~~ 69 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAI---AVSVHVFSYHHW--------Y----ALQKQAQSNVQFHFGAELPA--------DQD 69 (155)
T ss_dssp T-EEEEEE---SSHHHHS--S---EEEEEESBHHHH--------H----HHHHHHGGGEEE-SS--HHH--------HTT
T ss_pred CCeEEEEcCCchhhHHHhhhc---CCEEEEEEchHH--------H----HHhHhcccCceEeeeccCCc--------ccC
Confidence 567999997776777777643 234555553211 0 11111 33566777766543 256
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
||.||+-.|- +++++.--+.++...|.+||+|.|-=
T Consensus 70 ~D~vvly~PK---------------aK~e~~~lL~~l~~~L~~g~~i~vVG 105 (155)
T PF08468_consen 70 FDTVVLYWPK---------------AKAEAQYLLANLLSHLPPGTEIFVVG 105 (155)
T ss_dssp -SEEEEE--S---------------SHHHHHHHHHHHHTTS-TT-EEEEEE
T ss_pred CCEEEEEccC---------------cHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 9999999984 35566667788889999999998864
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=65.74 E-value=30 Score=36.09 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=66.8
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD 118 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD 118 (421)
.+||=++=|-=.||+.+|+..+ ...|+|.-.+.. .. ..++.|++...-.++ .++.-||.++-.. ..+||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~--Av---~~a~~N~~~N~~~~~-~v~~~Da~~~l~~----~~~fD 127 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPD--AV---ELIKKNLELNGLENE-KVFNKDANALLHE----ERKFD 127 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHH--HH---HHHHHHHHHhCCCce-EEEhhhHHHHHhh----cCCCC
Confidence 4677676666667777776654 446777555532 22 235667654432223 3677888764221 35699
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642 119 RIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP 172 (421)
Q Consensus 119 rIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P 172 (421)
.|+.|=| |. . ..|+.+|...++++|-|+||-.|..+
T Consensus 128 ~V~lDP~--Gs-~---------------~~~l~~al~~~~~~gilyvSAtD~~~ 163 (382)
T PRK04338 128 VVDIDPF--GS-P---------------APFLDSAIRSVKRGGLLCVTATDTAP 163 (382)
T ss_pred EEEECCC--CC-c---------------HHHHHHHHHHhcCCCEEEEEecCchh
Confidence 9999944 53 1 25788888889999999999666543
No 150
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=65.50 E-value=33 Score=35.15 Aligned_cols=97 Identities=12% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
.+++||++|+-+=.|...|+ + ....+..+-|+....+ -+..|..+.|++++.... ...
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~-~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~f~~~~~~~~------~~~ 76 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLD-A--ASVRVHTQQFHHWQVL-------------SRQMGDNARFSLVATAED------VAD 76 (342)
T ss_pred CCCcEEEEcCcchhhHHhhh-c--cceEEehhhhHHHHHH-------------HhhcCCceEeccccCCcc------CCC
Confidence 45689999999999988886 1 1223443333332111 113467889998887532 246
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
||.||.=.|-. +.++..-+..+...|.++|+|.|.=...
T Consensus 77 ~d~~~~~~pk~---------------k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 77 CDTLIYYWPKN---------------KQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred CCEEEEECCCC---------------HHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 89999987743 4445555677888899999999876543
No 151
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=65.20 E-value=48 Score=35.44 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=61.9
Q ss_pred EEecCChhHHHHHHHh-h-C-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 43 LVGEGDFSFSFALSQK-F-G-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 43 LVGEGDFSFSlSLa~~-~-g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
..|.|.|.-+.+-.-. . + ....+-.++.|--+++.. .+..|+..+...+..|..+---........-....||.
T Consensus 39 ~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~---~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~ 115 (524)
T TIGR02987 39 CCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK---RAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLFDI 115 (524)
T ss_pred CCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH---HHHHHHhhcCCCCceeeecccccccccccccccCcccE
Confidence 4577776555543211 1 1 112244445553333332 45667766654455444221111100000001257999
Q ss_pred EEEcCCCCCCCCCcccHH-------------------HHHHh-------------HHHHHHHH-HhhHhccCCCCeEEEE
Q 014642 120 IIFNFPHAGFHGKEEDDE-------------------VIRMH-------------MSLVEGFF-RNASGMLRPRGEVHVS 166 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~-------------------~I~~n-------------r~LL~~FF-~SA~~lL~~~GeIHVT 166 (421)
||=|=|-...+-.+.... ..+.. -.+...|| +-|..+|+++|.+-+-
T Consensus 116 IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I 195 (524)
T TIGR02987 116 VITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSII 195 (524)
T ss_pred EEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999988532111110 00000 12344466 5788999999998887
Q ss_pred ecCC
Q 014642 167 HKTT 170 (421)
Q Consensus 167 Lk~g 170 (421)
+.++
T Consensus 196 ~P~s 199 (524)
T TIGR02987 196 SPAS 199 (524)
T ss_pred EChH
Confidence 7664
No 152
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.13 E-value=79 Score=28.94 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=46.5
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+.+||++|=+. .--.+|++.+. .+.+++.++..+.+.+. ..+..+++.|.. ..+.+|.+.......+
T Consensus 6 ~~~vlitGasg-~iG~~l~~~l~~~g~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTGSGR-GIGRAIAVRLAKEGSLVVVNAKKRAEEMN-------ETLKMVKENGGEGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCChHHHH-------HHHHHHHHcCCeeEEEEeccCCHHHHHHHHHH
Confidence 46899999544 34566665552 34567665544433332 234556666654 3567888876643221
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
.....|.||+|=-
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (252)
T PRK06077 78 TIDRYGVADILVNNAG 93 (252)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998864
No 153
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=64.39 E-value=17 Score=29.11 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred EecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEc
Q 014642 44 VGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFN 123 (421)
Q Consensus 44 VGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFN 123 (421)
||=|.=+++..|++.+ ....++++=... .. .++ ++..+...... ......++..++... .....||.|+.+
T Consensus 3 iGcG~G~~~~~l~~~~-~~~~~~~~D~s~-~~-l~~---a~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~fD~V~~~ 73 (99)
T PF08242_consen 3 IGCGTGRLLRALLEEL-PDARYTGVDISP-SM-LER---ARERLAELGND-NFERLRFDVLDLFDY--DPPESFDLVVAS 73 (99)
T ss_dssp ESTTTS-TTTTHHHHC--EEEEEEEESSS-ST-TST---TCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE
T ss_pred eCccChHHHHHHHHhC-CCCEEEEEECCH-HH-HHH---HHHHhhhcCCc-ceeEEEeecCChhhc--ccccccceehhh
Confidence 6777777788888776 344566543332 22 211 22222222221 223334444444332 122689999988
Q ss_pred CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeE
Q 014642 124 FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEV 163 (421)
Q Consensus 124 FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeI 163 (421)
+-.-=. .=+..+++++..+|+|||.+
T Consensus 74 ~vl~~l--------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHL--------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS----------------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhh--------------hhHHHHHHHHHHHcCCCCCC
Confidence 543321 12458899999999999975
No 154
>PRK12744 short chain dehydrogenase; Provisional
Probab=64.35 E-value=84 Score=29.25 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=44.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|++|=+. ....+||+.+. .+.+++.....+.... ...+..+++|+..|+.+ .+.+|.++...-..+
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASK----ADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccch----HHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHH
Confidence 46899999554 35666666552 2445444443321110 11233456677667654 568899887653222
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
...+.|.||.|
T Consensus 83 ~~~~~~~id~li~~ 96 (257)
T PRK12744 83 AKAAFGRPDIAINT 96 (257)
T ss_pred HHHhhCCCCEEEEC
Confidence 12568988866
No 155
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=64.22 E-value=70 Score=32.96 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
..+||=+|=|.=+||++||.. +..++|.-.+. +.+ ..++.|++.+.-..+. +..-|+.+.... ....|
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~-~av----~~a~~N~~~~~~~~~~-~~~~d~~~~~~~---~~~~~ 301 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIES-EAI----ACAQQSAQMLGLDNLS-FAALDSAKFATA---QMSAP 301 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc---CCeEEEEECCH-HHH----HHHHHHHHHcCCCcEE-EEECCHHHHHHh---cCCCC
Confidence 356766665655666666643 23566655443 222 2466676554322333 345566554321 12459
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRK 197 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~ 197 (421)
|.||.|=|-.|. +.+++.... -++|++-|+|+..... -.-|+..| .||.+....+||
T Consensus 302 D~vi~DPPr~G~------------~~~~l~~l~-----~~~p~~ivyvsc~p~T--laRDl~~L---~gy~l~~~~~~D- 358 (374)
T TIGR02085 302 ELVLVNPPRRGI------------GKELCDYLS-----QMAPKFILYSSCNAQT--MAKDIAEL---SGYQIERVQLFD- 358 (374)
T ss_pred CEEEECCCCCCC------------cHHHHHHHH-----hcCCCeEEEEEeCHHH--HHHHHHHh---cCceEEEEEEec-
Confidence 999999998763 122222221 1678888888875432 12345555 689999999998
Q ss_pred CCCCCCc
Q 014642 198 EDYPGYS 204 (421)
Q Consensus 198 ~~YPGY~ 204 (421)
.||.=.
T Consensus 359 -mFPqT~ 364 (374)
T TIGR02085 359 -MFPHTS 364 (374)
T ss_pred -cCCCCC
Confidence 588433
No 156
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.80 E-value=89 Score=30.71 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=80.7
Q ss_pred EEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhH-HHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 41 ILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEA-RSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 41 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a-~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
+|=+|=|.===|..|++..+...--+||-... .| +..++..+..++. ..|=.|+|... |..++-|.
T Consensus 47 ~lEIG~GSGvvstfL~~~i~~~~~~latDiNp---------~A~~~Tl~TA~~n~~~--~~~V~tdl~~~--l~~~~VDv 113 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIGPQALYLATDINP---------EALEATLETARCNRVH--IDVVRTDLLSG--LRNESVDV 113 (209)
T ss_pred EEEecCCcchHHHHHHHhcCCCceEEEecCCH---------HHHHHHHHHHHhcCCc--cceeehhHHhh--hccCCccE
Confidence 56678888888888888887555566765543 23 3467777777765 33444555443 45589999
Q ss_pred EEEcCCCCCCCCCcccHHHHH-------HhHHHHHHHHHhhHhccCCCCeEEE-EecCCCC
Q 014642 120 IIFNFPHAGFHGKEEDDEVIR-------MHMSLVEGFFRNASGMLRPRGEVHV-SHKTTAP 172 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~~I~-------~nr~LL~~FF~SA~~lL~~~GeIHV-TLk~g~P 172 (421)
+|||=|-+-..-.+...++|. .-|+.+..|+.-..++|+|.|-..+ ++....|
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 999999987533333344443 2478889999999999999998665 4444444
No 157
>PRK06701 short chain dehydrogenase; Provisional
Probab=63.43 E-value=68 Score=31.09 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk-- 113 (421)
+.+||++|-+.+ -..+|++.+. .+..|+.++....+.+. ...+.++..|..+ .+.+|+++......+-
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDAN-------ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHH-------HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 468999996542 2444444331 24567777665433221 2234455566554 5688988866432221
Q ss_pred ----cCcccEEEEcC
Q 014642 114 ----KRKFDRIIFNF 124 (421)
Q Consensus 114 ----~~~FDrIIFNF 124 (421)
...+|.||.|=
T Consensus 118 i~~~~~~iD~lI~~A 132 (290)
T PRK06701 118 TVRELGRLDILVNNA 132 (290)
T ss_pred HHHHcCCCCEEEECC
Confidence 24689888773
No 158
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=63.24 E-value=31 Score=36.02 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=65.9
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
+||=.-=|-=.+++-++...+....|+|.-.+... +..++.|++..+-..+.|..+ ||.++-.. ...+||+
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A-----v~~i~~N~~~N~~~~~~v~~~-Da~~~l~~---~~~~fDv 117 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKA-----VESIKNNVEYNSVENIEVPNE-DAANVLRY---RNRKFHV 117 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH-----HHHHHHHHHHhCCCcEEEEch-hHHHHHHH---hCCCCCE
Confidence 45544445555555556553234578886555321 335677886654434555555 77766332 1367999
Q ss_pred EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
|..+=| |. . ..|+.+|.+.++.+|-++||--|+.
T Consensus 118 IdlDPf--Gs---~-------------~~fld~al~~~~~~glL~vTaTD~~ 151 (374)
T TIGR00308 118 IDIDPF--GT---P-------------APFVDSAIQASAERGLLLVTATDTS 151 (374)
T ss_pred EEeCCC--CC---c-------------HHHHHHHHHhcccCCEEEEEecccH
Confidence 999843 42 1 1699999999999999999966653
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=62.95 E-value=38 Score=33.17 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
.+.||.|+...= .+..........++....+|+|||.+.|-+.+.-
T Consensus 201 ~~~fD~I~crnv------------l~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 201 LGDFDLIFCRNV------------LIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred cCCCCEEEechh------------HHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 468999986321 1222334456777788889999999999988764
No 160
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=62.56 E-value=1.3e+02 Score=29.30 Aligned_cols=127 Identities=21% Similarity=0.300 Sum_probs=82.6
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC-cCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE-MKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk-L~~~~~Lk~~ 115 (421)
++.|||=+|=||=++=..|.+.- ++.+...|- ..+++.+..+.|+.|+.+ |+.. |. .+..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k----~v~g~GvEi----------d~~~v~~cv~rGv~Viq~-Dld~gL~---~f~d~ 74 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEK----QVDGYGVEI----------DPDNVAACVARGVSVIQG-DLDEGLA---DFPDQ 74 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhc----CCeEEEEec----------CHHHHHHHHHcCCCEEEC-CHHHhHh---hCCCC
Confidence 36799999999988777776642 455655552 124577777889998775 3322 32 24579
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC-------------C-------CCcCc
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT-------------T-------APFCK 175 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-------------g-------~PY~s 175 (421)
.||.||.+- ....++.=.++|.. ||+-+.++.||..+ | -||..
T Consensus 75 sFD~VIlsq----------tLQ~~~~P~~vL~E-------mlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W 137 (193)
T PF07021_consen 75 SFDYVILSQ----------TLQAVRRPDEVLEE-------MLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW 137 (193)
T ss_pred CccEEehHh----------HHHhHhHHHHHHHH-------HHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 999999752 11233333444443 45556677777643 2 24433
Q ss_pred c-----------cHHHHHHhCCcEEEEEeeCCCC
Q 014642 176 W-----------HIEELARKHSLLRLDCVQFRKE 198 (421)
Q Consensus 176 W-----------nI~~LAa~aGL~L~~~~~F~~~ 198 (421)
| +.++|+++.|+.+.++..++..
T Consensus 138 YdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 138 YDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred cCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 3 6789999999999999988854
No 161
>PLN02672 methionine S-methyltransferase
Probab=61.62 E-value=1e+02 Score=36.88 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=84.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH--HhC--------------CCEEEeec
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL--KKL--------------GASIIHGV 101 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L--r~~--------------Gv~VlhgV 101 (421)
..+||=+|=|+=-.+++|++... ...++|+-.+ .+.+. -|..|++.. ... .+++ +.-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis-~~Al~----~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f-~~s 191 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDIN-PRAVK----VAWINLYLNALDDDGLPVYDGEGKTLLDRVEF-YES 191 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECC-HHHHH----HHHHHHHHcCcccccccccccccccccccEEE-EEC
Confidence 35899999999999999998864 3478877444 33332 355666542 111 1222 223
Q ss_pred ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHh------------------------HHHHHHHHHhhHhcc
Q 014642 102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMH------------------------MSLVEGFFRNASGML 157 (421)
Q Consensus 102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~n------------------------r~LL~~FF~SA~~lL 157 (421)
|....-. . .+.+||.||-|=|=+...-.+.....++.| -.+++.....|..+|
T Consensus 192 Dl~~~~~--~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L 268 (1082)
T PLN02672 192 DLLGYCR--D-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 268 (1082)
T ss_pred chhhhcc--c-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc
Confidence 4432210 0 123699999999987642222222233321 123466778899999
Q ss_pred CCCCeEEEEecCCCCcCcccHH-HHHHhCCcEEEEE
Q 014642 158 RPRGEVHVSHKTTAPFCKWHIE-ELARKHSLLRLDC 192 (421)
Q Consensus 158 ~~~GeIHVTLk~g~PY~sWnI~-~LAa~aGL~L~~~ 192 (421)
+++|.+.+-+-..+- . .+. ++.++.|+.....
T Consensus 269 ~pgG~l~lEiG~~q~-~--~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 269 KPMGIMIFNMGGRPG-Q--AVCERLFERRGFRITKL 301 (1082)
T ss_pred cCCCEEEEEECccHH-H--HHHHHHHHHCCCCeeEE
Confidence 999998888754421 1 455 4777778766555
No 162
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=61.16 E-value=63 Score=27.65 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred eEEEEecCC---hhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 40 QILLVGEGD---FSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 40 rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
.+|++|-+. .+.+..|+++ .+..|+.++.+ .+.+...+.+++|+..|.. .....|.++......+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~------~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR--GARVVILTSRS------EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESS------CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc--CceEEEEeeec------ccccccccccccccccccccccccccccccccccccccc
Confidence 567777543 3444445544 24578888877 1123344457788877754 3444888877654322
Q ss_pred ---ccCcccEEEEcCCCCC
Q 014642 113 ---SKRKFDRIIFNFPHAG 128 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH~G 128 (421)
....+|.+|.|-....
T Consensus 74 ~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccc
Confidence 2478999999977776
No 163
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=60.38 E-value=54 Score=32.51 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=54.7
Q ss_pred ccCCCCeEEEEecCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cc
Q 014642 34 HYSSKHQILLVGEGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SE 111 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~ 111 (421)
...++++||+.|-|-.. ++..||++.| ...|++|.-+. +.++.++++|+...+.....+..+. ..
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~------------~~~~~~~~~Ga~~~i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDD------------RKLEWAREFGATHTVNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCH------------HHHHHHHHcCCceEEcCCCcCHHHHHHH
Confidence 44568899999987654 3445677765 33588774432 2355667788754333221111110 01
Q ss_pred -cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 -LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 -Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
..+..+|.|| + .+|. . .-+..+..+|+++|.|.+.
T Consensus 240 ~~~~~g~d~vi-d--~~g~-------------~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 240 LTGGFGADVVI-D--AVGR-------------P----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HhCCCCCCEEE-E--CCCC-------------H----HHHHHHHHHhccCCEEEEE
Confidence 1234688665 4 4553 0 1133355678999987653
No 164
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.01 E-value=1.5e+02 Score=28.37 Aligned_cols=78 Identities=14% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCeEEEEecC-ChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccc--
Q 014642 38 KHQILLVGEG-DFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEG-DFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~L-- 112 (421)
++.+|+.|=+ +=---+++|+.+ ..+.+|+.+..+ +.+. +.+++|.+ .|..+.+.+|.++......+
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~--~~~~-------~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG--DALK-------KRVEPLAAELGAFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc--hHHH-------HHHHHHHHhcCCceEEecCCCCHHHHHHHHH
Confidence 4689999964 212333333333 135577776543 1111 12333332 25445578899887654332
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
.....|.+|.|-
T Consensus 81 ~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 81 TLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHhcCCCcEEEECC
Confidence 125789999884
No 165
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=59.56 E-value=44 Score=31.50 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=61.9
Q ss_pred eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642 33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL 112 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L 112 (421)
..+++..+||=||-|.=+|+.+|++++. ++-+|.+|-.+.+. .+.. ...+++ ..-|.. .. +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp~v~~----~~~~------~~rv~~-~~gd~f--~~---~ 156 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYP---NLRATVFDLPEVIE----QAKE------ADRVEF-VPGDFF--DP---L 156 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHST---TSEEEEEE-HHHHC----CHHH------TTTEEE-EES-TT--TC---C
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCC---CCcceeeccHhhhh----cccc------cccccc-ccccHH--hh---h
Confidence 4566677899999999999999999984 56789999765442 1222 223333 333443 11 1
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCC--CeEEEE
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPR--GEVHVS 166 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~--GeIHVT 166 (421)
.. +|.|++. |+-..- ..+-....++++...|+|+ |+|.|-
T Consensus 157 -P~-~D~~~l~--~vLh~~----------~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 -PV-ADVYLLR--HVLHDW----------SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp -SS-ESEEEEE--SSGGGS-----------HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred -cc-ccceeee--hhhhhc----------chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 23 8999883 443210 1222345567788889988 998775
No 166
>PHA03412 putative methyltransferase; Provisional
Probab=59.55 E-value=39 Score=33.67 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=63.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhC--CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG--SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g--s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
..+||=+|=|.=.|++++++... ...+|+|--+|....- -+..|+. .+.++ .-|+.... + ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-----~Ar~n~~-----~~~~~-~~D~~~~~----~-~~ 113 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-----LGKRIVP-----EATWI-NADALTTE----F-DT 113 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-----HHHhhcc-----CCEEE-Ecchhccc----c-cC
Confidence 56999999998899999987642 2346887777743211 2334432 24433 35654322 1 35
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeE
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEV 163 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeI 163 (421)
+||.||-|=|..-.+ ..+. ......-.+...|+..|.+++++ |.+
T Consensus 114 ~FDlIIsNPPY~~~~-~~d~-~ar~~g~~~~~~li~~A~~Ll~~-G~~ 158 (241)
T PHA03412 114 LFDMAISNPPFGKIK-TSDF-KGKYTGAEFEYKVIERASQIARQ-GTF 158 (241)
T ss_pred CccEEEECCCCCCcc-cccc-CCcccccHHHHHHHHHHHHHcCC-CEE
Confidence 899999999998532 1111 00001124456688888886665 555
No 167
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=59.38 E-value=52 Score=33.65 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF 117 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F 117 (421)
+++||=||=|.==-|-.||+. +.+|++. |--+++.+-+..- .-.+-..+.++...-+-+.+.++.. ...|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GI--D~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~----~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGI--DASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL----TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEee--cccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc----cccc
Confidence 478999999998888888875 3455553 4333333322211 1122233445555555556665543 2449
Q ss_pred cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
|.|+. ..+-.|-+-+..|..++.++|+|+|.+.||--+
T Consensus 160 DaVvc--------------sevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 160 DAVVC--------------SEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ceeee--------------HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99984 246678888999999999999999999997644
No 168
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=59.05 E-value=26 Score=37.28 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCCCeEEEEecCC-hhHHHHHHHhhCCCCcEEeccccCHHHHHHh-----hhhHHHHHHHHHhCCCE-EEeecccCCcCc
Q 014642 36 SSKHQILLVGEGD-FSFSFALSQKFGSASNICASSLDSYETVVKK-----FKEARSNLDTLKKLGAS-IIHGVDATEMKE 108 (421)
Q Consensus 36 ss~~rILLVGEGD-FSFSlSLa~~~gs~~nLvATSlDS~eeL~~K-----Y~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~ 108 (421)
...+++|++|=.+ ++.+.+.|++++.+.++++++++.... ..+ |-+.+.-.+.+++.|.. ..+..|+++-..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~-~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGT-EKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchh-hhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 4467899999876 444433788886678888888864222 222 11233344556677865 457889998654
Q ss_pred cccc------ccCcccEEEEcC
Q 014642 109 HSEL------SKRKFDRIIFNF 124 (421)
Q Consensus 109 ~~~L------k~~~FDrIIFNF 124 (421)
...+ ...+.|.+|.|-
T Consensus 118 v~~lie~I~e~~G~IDiLVnSa 139 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSL 139 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 3221 126789999874
No 169
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=58.20 E-value=11 Score=37.02 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=48.1
Q ss_pred cccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH
Q 014642 101 VDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE 180 (421)
Q Consensus 101 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~ 180 (421)
|=|.+|.. .+|.....|.+||-.-..|. | +..|++-|..+|+++|.++|.=..+.--+.=...+
T Consensus 108 Vtacdia~-vPL~~~svDv~VfcLSLMGT--------n-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 108 VTACDIAN-VPLEDESVDVAVFCLSLMGT--------N-------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp EEES-TTS--S--TT-EEEEEEES---SS----------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred EEEecCcc-CcCCCCceeEEEEEhhhhCC--------C-------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 44666743 35788999999999999985 1 46899999999999999999876653222222234
Q ss_pred HHHhCCcEEEEE
Q 014642 181 LARKHSLLRLDC 192 (421)
Q Consensus 181 LAa~aGL~L~~~ 192 (421)
.-+..|+.+..+
T Consensus 172 ~~~~~GF~~~~~ 183 (219)
T PF05148_consen 172 ALKKLGFKLKSK 183 (219)
T ss_dssp HHHCTTEEEEEE
T ss_pred HHHHCCCeEEec
Confidence 555678888765
No 170
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=56.64 E-value=95 Score=30.68 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=56.2
Q ss_pred CCCCeEEEEecCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC--cCccccc
Q 014642 36 SSKHQILLVGEGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE--MKEHSEL 112 (421)
Q Consensus 36 ss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk--L~~~~~L 112 (421)
..+++||++|=|..- ++..||++.| .++++++.... ...+++.++++|+.+ ||..+ +.+ ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~---------~~~~~~~~~~~Ga~~---v~~~~~~~~~--~~ 234 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDP---------PDPKADIVEELGATY---VNSSKTPVAE--VK 234 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCC---------CHHHHHHHHHcCCEE---ecCCccchhh--hh
Confidence 367899999987654 5556778775 36888876311 112466778899975 33322 111 11
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
....+|.||=- +|. . ..+..+..+|+++|.|.+
T Consensus 235 ~~~~~d~vid~---~g~---~--------------~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 235 LVGEFDLIIEA---TGV---P--------------PLAFEALPALAPNGVVIL 267 (355)
T ss_pred hcCCCCEEEEC---cCC---H--------------HHHHHHHHHccCCcEEEE
Confidence 23468865542 342 0 235567778999998754
No 171
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.44 E-value=1e+02 Score=28.99 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCeEEEEecCC-hhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccc--
Q 014642 38 KHQILLVGEGD-FSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~L-- 112 (421)
++.+|+.|=++ =.--+++|+.+ ..+.+|+.+..+... .+.+++|.+ .+..+.+.+|+++......+
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA---------RPYVEPLAEELDAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh---------HHHHHHHHHhhccceEEecCcCCHHHHHHHHH
Confidence 46889999653 12333333333 124578777665321 112333322 23345678999987654332
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
...+.|.+|.|=
T Consensus 81 ~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 81 RIAEEWGRLDFLLHSI 96 (258)
T ss_pred HHHHHcCCCCEEEEcC
Confidence 125789999883
No 172
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=56.43 E-value=13 Score=38.64 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=39.4
Q ss_pred cCCCCeEEEEecCChhHHHH--HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642 35 YSSKHQILLVGEGDFSFSFA--LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE 108 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlS--La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~ 108 (421)
|-.++|+.++||++..++++ |.+ +|-..-.++|...+.+...+ -++.|.. ++.|+.+-|...|.+
T Consensus 271 ~l~Gkrv~i~gd~~~~~~l~~~L~e-lGm~~v~~~t~~~~~~~~~~-------~~~~l~~-~~~v~~~~d~~~l~~ 337 (407)
T TIGR01279 271 LLRGKKIFFFGDNLLELPLARFLKR-CGMEVVECGTPYIHRRFHAA-------ELALLEG-GVRIVEQPDFHRQLQ 337 (407)
T ss_pred hcCCCEEEEECCchHHHHHHHHHHH-CCCEEEEecCCCCChHHHHH-------HHhhcCC-CCeEEeCCCHHHHHH
Confidence 44688999999999887655 344 66444445555555443221 1233333 577777777776654
No 173
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=56.26 E-value=51 Score=31.47 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=55.1
Q ss_pred cCCCCeEEEEe-cCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cc
Q 014642 35 YSSKHQILLVG-EGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SE 111 (421)
Q Consensus 35 Yss~~rILLVG-EGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~ 111 (421)
..++++||+.| .|..- ++..||++.| ..+++|+-.. ++.+.|+++|+.-++.-+-..+.+. ..
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~------------~~~~~l~~~Ga~~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSD------------DKVAWLKELGFDAVFNYKTVSLEEALKE 206 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCH------------HHHHHHHHcCCCEEEeCCCccHHHHHHH
Confidence 45678999998 56655 5566788875 3688876321 2356677788754443322222111 11
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
+..+.+|.|+ + .+|. .-+..+.++|+++|.|.+
T Consensus 207 ~~~~gvd~vl-d--~~g~------------------~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 207 AAPDGIDCYF-D--NVGG------------------EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HCCCCcEEEE-E--CCCH------------------HHHHHHHHhhccCCEEEE
Confidence 1234588665 4 3552 123455667899999754
No 174
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.56 E-value=1.1e+02 Score=29.56 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=41.7
Q ss_pred CCeEEEEecC-----ChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccc
Q 014642 38 KHQILLVGEG-----DFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 38 ~~rILLVGEG-----DFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~ 111 (421)
++.+|+.|=+ .+..++.|++ .+.+|+.+..+. ++.+ .++++ ++.|..+.+.+|.++......
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~---~G~~Vil~~r~~--~~~~-------~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFE---QGAELAFTYLNE--ALKK-------RVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEEecCH--HHHH-------HHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 5689999964 2333444443 245787776542 1111 12333 223433567889998765432
Q ss_pred c------ccCcccEEEEc
Q 014642 112 L------SKRKFDRIIFN 123 (421)
Q Consensus 112 L------k~~~FDrIIFN 123 (421)
+ ...++|.+|.|
T Consensus 73 ~~~~i~~~~g~iDilVnn 90 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHS 90 (274)
T ss_pred HHHHHHHHcCCCCEEEEC
Confidence 2 13678998888
No 175
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=55.37 E-value=1.8e+02 Score=27.79 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=59.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-HHhC-------CCEE-EeecccCCc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT-LKKL-------GASI-IHGVDATEM 106 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~-Lr~~-------Gv~V-lhgVDATkL 106 (421)
.+..+||.+|.|.=--++.||++ +.+|||.-+. ...+ ++.- .+.++.. .... +..| ++--|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s-~~Ai-~~~~-~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELS-ELAV-EQFF-AENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccC-HHHH-HHHH-HHcCCCccccccccccccccCceEEEECcccCC
Confidence 34569999999999999999974 5567775443 2222 2210 0111110 0001 1111 123444444
Q ss_pred CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEec
Q 014642 107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHK 168 (421)
Q Consensus 107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk 168 (421)
... ....||.|+= ....+..+.++-..+++....+|+|||. +.+|+.
T Consensus 110 ~~~---~~~~fd~v~D------------~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 110 TAA---DLADVDAVYD------------RAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred Ccc---cCCCeeEEEe------------hHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 321 1134555541 0011223445567899999999999997 445664
No 176
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.10 E-value=1.3e+02 Score=28.39 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=43.1
Q ss_pred CCeEEEEecCC-hhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccc--
Q 014642 38 KHQILLVGEGD-FSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~L-- 112 (421)
++.+|+.|=+. ---.+++|+.+ ..+.+|+.+..+ +.+ .+.+++|.+. |....+.+|+++......+
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~--~~~-------~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS--EVL-------EKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc--hHH-------HHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 46789999863 12333333333 124567766543 111 1224445433 5555678999987654322
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
...+.|.+|.|-
T Consensus 79 ~~~~~~g~iDilVnna 94 (260)
T PRK06603 79 DIKEKWGSFDFLLHGM 94 (260)
T ss_pred HHHHHcCCccEEEEcc
Confidence 126799998875
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=54.55 E-value=29 Score=33.94 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=71.4
Q ss_pred eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcc
Q 014642 31 WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEH 109 (421)
Q Consensus 31 ~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~ 109 (421)
++.-.+...+||=+|=+-===|+-+|........||+.-+|++ ++..|++|+++---.. +.++.+-||-+.-+.
T Consensus 53 ~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e-----~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 53 LLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEE-----RAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHH-----HHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 3455667789999997632224555777653346777777643 3446778877654333 455555577665443
Q ss_pred cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
+....||.|.-+- .| ..-..||..+..+|++||-|.+-
T Consensus 128 --~~~~~fDliFIDa------dK-----------~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 --LLDGSFDLVFIDA------DK-----------ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred --ccCCCccEEEEeC------Ch-----------hhCHHHHHHHHHHhCCCcEEEEe
Confidence 3468899986541 12 22358999999999999887664
No 178
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=54.38 E-value=1.2e+02 Score=29.13 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=51.9
Q ss_pred ccCCCCeEEEEecCChhHHHHH---HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642 34 HYSSKHQILLVGEGDFSFSFAL---SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS 110 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlSL---a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~ 110 (421)
...++++||+.|.|- ...++ |+..| ..+++|+-.. ++.+.|+++|+...+..+..
T Consensus 152 ~~~~g~~vlV~g~g~--vg~~~~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~~~~~~~------ 209 (319)
T cd08242 152 PITPGDKVAVLGDGK--LGLLIAQVLALTG--PDVVLVGRHS------------EKLALARRLGVETVLPDEAE------ 209 (319)
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCH------------HHHHHHHHcCCcEEeCcccc------
Confidence 455678999999764 44443 45554 4577775432 23556666787655544321
Q ss_pred ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
.....+|.|+=. +|. + .-+..+.+.|+++|.|.+
T Consensus 210 -~~~~~~d~vid~---~g~---~--------------~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 210 -SEGGGFDVVVEA---TGS---P--------------SGLELALRLVRPRGTVVL 243 (319)
T ss_pred -ccCCCCCEEEEC---CCC---h--------------HHHHHHHHHhhcCCEEEE
Confidence 234568887642 442 1 123445567888898886
No 179
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=53.55 E-value=1.7e+02 Score=26.44 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=51.3
Q ss_pred CCCCeEEEEecCChhHHHHH---HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc-c
Q 014642 36 SSKHQILLVGEGDFSFSFAL---SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS-E 111 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSL---a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~-~ 111 (421)
.++.+||++|-|. ...++ +++.| .++++++.+.. ..+.+++.|+......+-....... .
T Consensus 133 ~~~~~vli~g~~~--~G~~~~~~a~~~g--~~v~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~ 196 (271)
T cd05188 133 KPGDTVLVLGAGG--VGLLAAQLAKAAG--ARVIVTDRSDE------------KLELAKELGADHVIDYKEEDLEEELRL 196 (271)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCHH------------HHHHHHHhCCceeccCCcCCHHHHHHH
Confidence 5678999999987 44443 45544 67888876531 2334555665443322221111100 1
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
.....+|.|+-+.+.. .....+...|+++|.+...
T Consensus 197 ~~~~~~d~vi~~~~~~--------------------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 197 TGGGGADVVIDAVGGP--------------------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred hcCCCCCEEEECCCCH--------------------HHHHHHHHhcccCCEEEEE
Confidence 1246799998653211 1233445677888886543
No 180
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.43 E-value=33 Score=35.72 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
-+++|+||+||=-+-+=.++| .+-.||+--..| .--++.++|-.+..+ --....+.++-| |.-.+-+. ++.+.
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iG-DG~~fl~~--~~~~~ 195 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIG-DGFLFLED--LKENP 195 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEec-cHHHHHHH--hccCC
Confidence 468999999997777666666 344455444444 344555555433221 122334777777 88776543 34689
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK 184 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~ 184 (421)
||.||-.=--. ..-........||....+-|+++|.+. +..+ +-|=...++++
T Consensus 196 ~dVii~dssdp----------vgpa~~lf~~~~~~~v~~aLk~dgv~~-~q~e----c~wl~~~~i~e 248 (337)
T KOG1562|consen 196 FDVIITDSSDP----------VGPACALFQKPYFGLVLDALKGDGVVC-TQGE----CMWLHLDYIKE 248 (337)
T ss_pred ceEEEEecCCc----------cchHHHHHHHHHHHHHHHhhCCCcEEE-Eecc----eehHHHHHHHH
Confidence 99999753322 223345567899999999999877654 3332 66765565554
No 181
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=53.35 E-value=43 Score=31.40 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=46.3
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk-- 113 (421)
++++|+.| |.=-.-.++|+++ ..+.+|++++.+..+. ..+.+++.|..+ .+.+|.++......+-
T Consensus 8 ~k~~lItG-as~gIG~aia~~l~~~G~~vv~~~~~~~~~----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITG-CNTGLGQGMAIGLAKAGADIVGVGVAEAPE----------TQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEecCchHHH----------HHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 56889998 4446677777665 2456788876543222 223445556554 5788999877543321
Q ss_pred ----cCcccEEEEc
Q 014642 114 ----KRKFDRIIFN 123 (421)
Q Consensus 114 ----~~~FDrIIFN 123 (421)
..+.|.+|.|
T Consensus 77 ~~~~~g~iD~lv~~ 90 (251)
T PRK12481 77 AVEVMGHIDILINN 90 (251)
T ss_pred HHHHcCCCCEEEEC
Confidence 2568988877
No 182
>PRK08303 short chain dehydrogenase; Provisional
Probab=53.32 E-value=1.3e+02 Score=29.62 Aligned_cols=85 Identities=11% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhh---hhHHHHHHHHHhCCCE-EEeecccCCcCccccc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKF---KEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY---~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L 112 (421)
++.+|+.|= .=..-+++|+.+- .+.+|++++.+... ..+.+ ....+..+.|+..|.. +.+.+|.++......+
T Consensus 8 ~k~~lITGg-s~GIG~aia~~la~~G~~Vv~~~r~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 8 GKVALVAGA-TRGAGRGIAVELGAAGATVYVTGRSTRA-RRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeccccc-ccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 468899994 4456677776652 35688888776421 00000 0122234556666654 4578899987654322
Q ss_pred ------ccCcccEEEEcC
Q 014642 113 ------SKRKFDRIIFNF 124 (421)
Q Consensus 113 ------k~~~FDrIIFNF 124 (421)
...+.|.+|.|-
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 125789999884
No 183
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=52.78 E-value=2e+02 Score=27.89 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=69.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++++=||.|-=|-+.-++.. +....++|--.| ++..+ -.+.|.+.+.--++.|+.| ||-+.-. .+ .
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~--~~a~~---~~~~N~~~fg~~n~~vv~g-~Ap~~L~--~~--~ 101 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERD--EEALE---LIERNAARFGVDNLEVVEG-DAPEALP--DL--P 101 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecC--HHHHH---HHHHHHHHhCCCcEEEEec-cchHhhc--CC--C
Confidence 45779999999999999999843 334455555444 33332 3567888877445555554 5544322 11 2
Q ss_pred cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.||+|. +|+ |.. +..-+..|-..|+++|+|.++-.+-
T Consensus 102 ~~daiF-----IGG-g~~------------i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 102 SPDAIF-----IGG-GGN------------IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCEEE-----ECC-CCC------------HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 699996 454 221 3466788899999999999987764
No 184
>PLN02740 Alcohol dehydrogenase-like
Probab=52.05 E-value=1.1e+02 Score=30.91 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=55.0
Q ss_pred eccCCCCeEEEEecCChhHH-HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC--cCcc
Q 014642 33 MHYSSKHQILLVGEGDFSFS-FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE--MKEH 109 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk--L~~~ 109 (421)
....++++||++|-|-.--. ..+|++.| ..+|+++..+. +.++.++++|+....+.+..+ +.+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~------------~r~~~a~~~Ga~~~i~~~~~~~~~~~~ 260 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINP------------EKFEKGKEMGITDFINPKDSDKPVHER 260 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCCh------------HHHHHHHHcCCcEEEecccccchHHHH
Confidence 34567889999998865533 34567765 34688875432 235566778886544332211 1110
Q ss_pred -cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCC-CeEEE
Q 014642 110 -SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPR-GEVHV 165 (421)
Q Consensus 110 -~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~-GeIHV 165 (421)
..+....+|.||= .+|. ...+..|..+++++ |.+.+
T Consensus 261 v~~~~~~g~dvvid---~~G~-----------------~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 261 IREMTGGGVDYSFE---CAGN-----------------VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred HHHHhCCCCCEEEE---CCCC-----------------hHHHHHHHHhhhcCCCEEEE
Confidence 1112236887643 4552 02344555677775 87654
No 185
>PRK07454 short chain dehydrogenase; Provisional
Probab=51.99 E-value=44 Score=30.62 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL- 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L- 112 (421)
++.+++|++|= .=-...+|++.+. .+.+|++++.+.. .+ .+-.+.+++.+.. ..+-+|.++......+
T Consensus 4 ~~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (241)
T PRK07454 4 NSMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQD-AL-------EALAAELRSTGVKAAAYSIDLSNPEAIAPGI 74 (241)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhCCCcEEEEEccCCCHHHHHHHH
Confidence 34568999984 3345666665542 3457888887532 11 1223334444433 3567899987643222
Q ss_pred -----ccCcccEEEEc
Q 014642 113 -----SKRKFDRIIFN 123 (421)
Q Consensus 113 -----k~~~FDrIIFN 123 (421)
+....|.||.|
T Consensus 75 ~~~~~~~~~id~lv~~ 90 (241)
T PRK07454 75 AELLEQFGCPDVLINN 90 (241)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12457888776
No 186
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=51.89 E-value=54 Score=33.69 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=71.2
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc-------
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE------- 111 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~------- 111 (421)
.++|=++=|.=.||++|++.. ..++|.-.+. ...+ .+++|+....-..+. ++.-||.+.-....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~--~ai~---~a~~N~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISK--PSVA---AAQYNIAANGIDNVQ-IIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCH--HHHH---HHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcccccc
Confidence 357544444444444777664 2576665553 2222 356666554322333 45557665321100
Q ss_pred -----cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642 112 -----LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS 186 (421)
Q Consensus 112 -----Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG 186 (421)
++..+||.||.+=|-.|. +.+++.... ++.+-|+|+..... -.-++..|.+ |
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G~------------~~~~l~~l~-------~~~~ivyvSC~p~t--larDl~~L~~--g 335 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAGL------------DDETLKLVQ-------AYERILYISCNPET--LCENLETLSQ--T 335 (362)
T ss_pred cccccccCCCCCEEEECCCCCCC------------cHHHHHHHH-------ccCCEEEEEeCHHH--HHHHHHHHcC--C
Confidence 012369999999998763 222332221 13566777654321 1234555653 9
Q ss_pred cEEEEEeeCCCCCCCCCcc
Q 014642 187 LLRLDCVQFRKEDYPGYSN 205 (421)
Q Consensus 187 L~L~~~~~F~~~~YPGY~h 205 (421)
|.+.+..+|| .||.=.|
T Consensus 336 Y~l~~v~~~D--mFPqT~H 352 (362)
T PRK05031 336 HKVERFALFD--QFPYTHH 352 (362)
T ss_pred cEEEEEEEcc--cCCCCCc
Confidence 9999999999 6885443
No 187
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=50.77 E-value=1.7e+02 Score=27.01 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=45.5
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. ....++++.+. .+.+|+.+..+. +. .....++|+..|.. ..+.+|.++...-..+
T Consensus 9 ~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 9 GKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITA-ER-------AELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCH-HH-------HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 45789998544 44555554441 246788877653 21 22235566665654 3567888876543221
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
....+|.||.|=-
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1256899998853
No 188
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=50.64 E-value=1.8e+02 Score=28.85 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~ 114 (421)
.+..+||=+|=|+=.+++.|++++..+.++ +.+|--+++++ .+..++..- .-+++|. ..-|.++......-..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~--~~iDiS~~mL~---~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARY--VPIDISADALK---ESAAALAAD-YPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeE--EEEECCHHHHH---HHHHHHHhh-CCCceEEEEEEcccchhhhhcccc
Confidence 355789999999999999999987433344 55673333333 133333210 1245542 2337665321110000
Q ss_pred CcccEEEE--cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 115 RKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 115 ~~FDrIIF--NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.. ++|++ ..+ .|. .+..-...||+.+...|+|+|.+.|.+-..
T Consensus 136 ~~-~~~~~~~gs~-~~~-----------~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 136 AG-RRLGFFPGST-IGN-----------FTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred cC-CeEEEEeccc-ccC-----------CCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 11 33332 222 111 122234689999999999999998877544
No 189
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=50.61 E-value=46 Score=31.09 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=45.8
Q ss_pred eEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc------
Q 014642 40 QILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL------ 112 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L------ 112 (421)
+||+.|-+ =...+++++.+. .+.+|+.++.+. +.+ ....++|++.|-...+.+|.++......+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNE-ENL-------EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 68999954 356666666552 345788877652 222 22345555555445678898876543221
Q ss_pred ccCcccEEEEcC
Q 014642 113 SKRKFDRIIFNF 124 (421)
Q Consensus 113 k~~~FDrIIFNF 124 (421)
.....|.||.|-
T Consensus 73 ~~g~id~li~na 84 (259)
T PRK08340 73 LLGGIDALVWNA 84 (259)
T ss_pred hcCCCCEEEECC
Confidence 125789999885
No 190
>PRK11524 putative methyltransferase; Provisional
Probab=50.03 E-value=26 Score=34.55 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=59.4
Q ss_pred EEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcc--cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642 97 IIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEE--DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC 174 (421)
Q Consensus 97 VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd--~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~ 174 (421)
-++.-|+.++-. .+...+||.||-|=|.-...+..+ .......+..++..+|..|..+|+++|.|.|-+.. . .-
T Consensus 10 ~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~-~-~~ 85 (284)
T PRK11524 10 TIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST-E-NM 85 (284)
T ss_pred EEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc-h-hh
Confidence 345557777432 245678999999988743111111 01113446677899999999999999999885321 1 11
Q ss_pred cccHHHHHHhCCcEEEEEeeCCC
Q 014642 175 KWHIEELARKHSLLRLDCVQFRK 197 (421)
Q Consensus 175 sWnI~~LAa~aGL~L~~~~~F~~ 197 (421)
. ...++.+.|+.+........
T Consensus 86 ~--~~~~~~~~~f~~~~~iiW~k 106 (284)
T PRK11524 86 P--FIDLYCRKLFTIKSRIVWSY 106 (284)
T ss_pred h--HHHHHHhcCcceEEEEEEEe
Confidence 1 13455677888877766543
No 191
>PRK05599 hypothetical protein; Provisional
Probab=50.03 E-value=61 Score=30.33 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=47.2
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeecccCCcCccccc-----
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SIIHGVDATEMKEHSEL----- 112 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~VlhgVDATkL~~~~~L----- 112 (421)
.+|+.|=+. ..-+++|+.+..+.+|+.++.+. +.+ ++-.++|++.|. ...+.+|+++......+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 72 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRP-EAA-------QGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ 72 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCH-HHH-------HHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH
Confidence 467777643 44555555554467888887653 222 234556666653 34678999998764332
Q ss_pred -ccCcccEEEEcC
Q 014642 113 -SKRKFDRIIFNF 124 (421)
Q Consensus 113 -k~~~FDrIIFNF 124 (421)
...+.|.+|.|.
T Consensus 73 ~~~g~id~lv~na 85 (246)
T PRK05599 73 ELAGEISLAVVAF 85 (246)
T ss_pred HhcCCCCEEEEec
Confidence 135789999885
No 192
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=49.72 E-value=2.1e+02 Score=26.37 Aligned_cols=79 Identities=11% Similarity=0.301 Sum_probs=44.8
Q ss_pred CCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc--
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L-- 112 (421)
++.+||++|=+. --..+|++.+. .+.+|+.++.+. +.+ .+..++|++.|. ...+-+|.++......+
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNA-ATL-------EAAVAALRAAGGAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 356899998443 33555554441 345788887763 222 223445665554 33567788876542211
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
...++|.||.|-
T Consensus 81 ~~~~~~~~id~vi~~a 96 (256)
T PRK06124 81 RIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHhcCCCCEEEECC
Confidence 125689998884
No 193
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=49.64 E-value=1.6e+02 Score=31.42 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCEEEeecccCCcCccc-----ccccCcccEEEEcCCCCCCCCCcccHHHHHHh----------HHHHHHHHHhhHhccC
Q 014642 94 GASIIHGVDATEMKEHS-----ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMH----------MSLVEGFFRNASGMLR 158 (421)
Q Consensus 94 Gv~VlhgVDATkL~~~~-----~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~n----------r~LL~~FF~SA~~lL~ 158 (421)
.....-++|++.....- ....-.||||.-+=|+.|- |.-..+.+|-+- ..|=...+.++.++|+
T Consensus 209 ~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~D-gt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk 287 (375)
T KOG2198|consen 209 PNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGD-GTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK 287 (375)
T ss_pred cceeeecccceeccccccccCchhhhhhcceeEEecccCCC-cccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc
Confidence 35566677777766542 2345789999999999995 421111122211 1344567888999999
Q ss_pred CCCeEEEEecCCCCcCcccHHHH
Q 014642 159 PRGEVHVSHKTTAPFCKWHIEEL 181 (421)
Q Consensus 159 ~~GeIHVTLk~g~PY~sWnI~~L 181 (421)
+||.+.=+-|...|-..=.++..
T Consensus 288 ~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 288 VGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred CCCEEEEeccCCCchhhHHHHHH
Confidence 99999999999998655444443
No 194
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=49.54 E-value=2.3e+02 Score=26.69 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=47.0
Q ss_pred eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~ 111 (421)
+.......+||=||=|.=.++..|++.++ +..++|. |-.+++.+ .|++++ .++.++. .|+.. .
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~gi--DiS~~~l~---~A~~~~-----~~~~~~~-~d~~~-----~ 100 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGV--EINEYAVE---KAKAYL-----PNINIIQ-GSLFD-----P 100 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEE--ECCHHHHH---HHHhhC-----CCCcEEE-eeccC-----C
Confidence 34455677999999999999999988763 3456655 52222332 133332 1344443 35543 2
Q ss_pred cccCcccEEEEcCC
Q 014642 112 LSKRKFDRIIFNFP 125 (421)
Q Consensus 112 Lk~~~FDrIIFNFP 125 (421)
+..+.||.|+.|.-
T Consensus 101 ~~~~sfD~V~~~~v 114 (204)
T TIGR03587 101 FKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCCEEEEEECCh
Confidence 34678999998764
No 195
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=48.54 E-value=30 Score=35.61 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=55.1
Q ss_pred CeEEEE-ecCChhHHHHHHHhhCC-----CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642 39 HQILLV-GEGDFSFSFALSQKFGS-----ASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL 112 (421)
Q Consensus 39 ~rILLV-GEGDFSFSlSLa~~~gs-----~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L 112 (421)
+++|+| =|+--|-+-++-..+|. +.||-|..+|+...+.+........+..+-..+ .+.++-+..+...+-+
T Consensus 31 ~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~~~~~~~~~~~--~l~~~~~~e~~~~PGi 108 (322)
T COG0003 31 KKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVKDYLARLLRTR--GLGGIYADELATLPGI 108 (322)
T ss_pred CcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHHHHHHhhcccc--ccchhHHHHHhhCCCH
Confidence 445555 67766666666554432 358999999998888775555554444433322 2244444444333221
Q ss_pred -------------ccCcccEEEEcCCCCCC
Q 014642 113 -------------SKRKFDRIIFNFPHAGF 129 (421)
Q Consensus 113 -------------k~~~FDrIIFNFPH~G~ 129 (421)
....||+|||+-|=+|.
T Consensus 109 dE~~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 109 DEALALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 24779999999999994
No 196
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.81 E-value=1.6e+02 Score=27.71 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=43.7
Q ss_pred CCeEEEEecC-ChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc---
Q 014642 38 KHQILLVGEG-DFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEG-DFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=| .=..-+++|+.+. .+.+|+.+..+..++..++ ..+++.. . ...+.+|+++..+...+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~------~~~~~~~-~-~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTER------IAKRLPE-P-APVLELDVTNEEHLASLADR 78 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHH------HHHhcCC-C-CcEEeCCCCCHHHHHHHHHH
Confidence 4689999953 2344445554442 3568888876532222221 1122221 2 24577899887654322
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...++|.+|.|=
T Consensus 79 ~~~~~g~iD~li~nA 93 (256)
T PRK07889 79 VREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHcCCCcEEEEcc
Confidence 126799999874
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=47.53 E-value=25 Score=34.14 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=79.3
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc----ccccC
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS----ELSKR 115 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~----~Lk~~ 115 (421)
+||=||=|.=-=+.-+|+++. ...--.|-.|... . +.....+++-..-++.-=..+|+++-...- .+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~--~---~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNL--R---PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHH--H---hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 599999999998889998884 2233333333221 1 112222222111122222356777652211 12356
Q ss_pred cccEEEE-cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE--------------------ecCCCCcC
Q 014642 116 KFDRIIF-NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS--------------------HKTTAPFC 174 (421)
Q Consensus 116 ~FDrIIF-NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT--------------------Lk~g~PY~ 174 (421)
.||.|+- |.=|+-. ...+.++|+.|.++|+++|.+.|= |+...|
T Consensus 102 ~~D~i~~~N~lHI~p-------------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp-- 166 (204)
T PF06080_consen 102 SFDAIFCINMLHISP-------------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP-- 166 (204)
T ss_pred CcceeeehhHHHhcC-------------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--
Confidence 8998874 4444442 556789999999999998876553 222223
Q ss_pred ccc------HHHHHHhCCcEEEEEee
Q 014642 175 KWH------IEELARKHSLLRLDCVQ 194 (421)
Q Consensus 175 sWn------I~~LAa~aGL~L~~~~~ 194 (421)
.|. |.++|+++||.|.+.++
T Consensus 167 ~~GiRD~e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 167 EWGIRDIEDVEALAAAHGLELEEDID 192 (204)
T ss_pred CcCccCHHHHHHHHHHCCCccCcccc
Confidence 353 45789999999987754
No 198
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.51 E-value=1.8e+02 Score=27.46 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=40.5
Q ss_pred CCeEEEEecCC-hhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-C-CC-EEEeecccCCcCccccc
Q 014642 38 KHQILLVGEGD-FSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKK-L-GA-SIIHGVDATEMKEHSEL 112 (421)
Q Consensus 38 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~-Gv-~VlhgVDATkL~~~~~L 112 (421)
++.+|+.|=++ =---+++|+.+ ..+.+|+.+....+. .+.+++|.+ . |. .+.+.+|+++......+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL---------EKEVRELADTLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc---------hHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Confidence 56899999652 22334444433 134577776543211 011222221 1 33 34567899887654322
Q ss_pred ------ccCcccEEEEc
Q 014642 113 ------SKRKFDRIIFN 123 (421)
Q Consensus 113 ------k~~~FDrIIFN 123 (421)
...++|.+|.|
T Consensus 78 ~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 78 FETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHhCCCccEEEEC
Confidence 12678988877
No 199
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=47.33 E-value=89 Score=29.79 Aligned_cols=99 Identities=21% Similarity=0.377 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEecCCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cc
Q 014642 34 HYSSKHQILLVGEGDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SE 111 (421)
Q Consensus 34 ~Yss~~rILLVGEGDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~ 111 (421)
...++.+||+.|.|.. .++..||+..| .++++|+-.. +..+.+++.|+..+...+-...... ..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKE------------EKLELAKELGADEVLNSLDDSPKDKKAA 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCH------------HHHHHHHHhCCCEEEcCCCcCHHHHHHH
Confidence 4567789999886642 45556677765 4577774432 1234455567644333222211110 11
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
+..+.+|.|+ ++ +|. ...+..+...|+++|.+...
T Consensus 228 ~~~~~~D~vi-d~--~g~-----------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 228 GLGGGFDVIF-DF--VGT-----------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred hcCCCceEEE-EC--CCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 2345688665 33 332 02345566788999987653
No 200
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=47.29 E-value=59 Score=32.13 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=64.6
Q ss_pred eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCc-Cccc
Q 014642 33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEM-KEHS 110 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL-~~~~ 110 (421)
......++||=||=+-=-=++++|+..+....|++.-.|. +. +.-|+.|++..- ...++++.| ||.+. .+-.
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~---~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~ 148 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--EN---YELGLPVIQKAGVAHKIDFREG-PALPVLDQMI 148 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HH---HHHHHHHHHHCCCCCceEEEec-cHHHHHHHHH
Confidence 3455677999999753222466777765444576666653 22 224666666432 223566655 44332 1110
Q ss_pred cc--ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 111 EL--SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 111 ~L--k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
.- ....||.|..+-- +..-..+|..|.++|++||-|.+
T Consensus 149 ~~~~~~~~fD~iFiDad-----------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-----------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred hccccCCcccEEEecCC-----------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 1258999988721 22245888889999999998766
No 201
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=47.19 E-value=65 Score=29.56 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L--- 112 (421)
+++||++|=+.+ ...++++.+- .+.+|++++....++ ..+.+++.+. -..+.+|+++......+
T Consensus 5 ~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~~~----------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEPSE----------TQQQVEALGRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchHHH----------HHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 568999997653 5666666552 356788887643221 2233444443 35678999987654221
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
.....|.||+|
T Consensus 74 ~~~~~~~~d~li~~ 87 (248)
T TIGR01832 74 AVEEFGHIDILVNN 87 (248)
T ss_pred HHHHcCCCCEEEEC
Confidence 12568999887
No 202
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=47.13 E-value=24 Score=36.44 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCeEEEEecCChhHHHH--HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 37 SKHQILLVGEGDFSFSFA--LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlS--La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.+.+|.++||++..++++ |.+ +|-..-.++|.+.+.+...+ -++.|. .++.|..+-|..++.+. ++.
T Consensus 275 ~Gkrv~i~g~~~~~~~la~~L~e-lGm~vv~~~t~~~~~~~~~~-------~~~~l~-~~~~v~~~~d~~~l~~~--i~~ 343 (396)
T cd01979 275 RGKSIFFMGDNLLEIPLARFLTR-CGMIVVEVGTPYLDKRFQAA-------ELELLP-PMVRIVEKPDNYRQLDR--IRE 343 (396)
T ss_pred cCCEEEEECCchHHHHHHHHHHH-CCCEEEeeCCCcCChHHHHH-------HHHhcC-CCCeEEECCCHHHHHHH--HHh
Confidence 578999999998555544 444 55322233333333222111 122222 25556555555554432 233
Q ss_pred CcccEEEE
Q 014642 115 RKFDRIIF 122 (421)
Q Consensus 115 ~~FDrIIF 122 (421)
.+.|.||=
T Consensus 344 ~~pDlli~ 351 (396)
T cd01979 344 LRPDLVVT 351 (396)
T ss_pred cCCCEEEe
Confidence 44555554
No 203
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=46.86 E-value=20 Score=34.80 Aligned_cols=86 Identities=21% Similarity=0.438 Sum_probs=45.9
Q ss_pred CCeEEEEecCChhHHHHHHHhhCC-----------CCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCC
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGS-----------ASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATE 105 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs-----------~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATk 105 (421)
++++|+| |.|.. .+|...++. -.||.|-..|.++.+. +|. ..+++.+... +...+-++.+..
T Consensus 28 g~~vLlv-d~D~~--~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (254)
T cd00550 28 GKKVLLV-STDPA--HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE-EYR--QEVLEPIEANLLLEMLKGILEEE 101 (254)
T ss_pred CCCceEE-eCCCc--ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHH-HHH--HHHHHHHHhhccchhHHHHHHHH
Confidence 5788888 67774 355554432 2457777777655554 343 2255555442 222222222221
Q ss_pred cC-----ccc-------ccccCcccEEEEcCCCCCC
Q 014642 106 MK-----EHS-------ELSKRKFDRIIFNFPHAGF 129 (421)
Q Consensus 106 L~-----~~~-------~Lk~~~FDrIIFNFPH~G~ 129 (421)
+. +-. .+....||+||++-|-+|.
T Consensus 102 ~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~ 137 (254)
T cd00550 102 LESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGH 137 (254)
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHH
Confidence 11 110 1123589999999999883
No 204
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.51 E-value=39 Score=32.34 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=68.1
Q ss_pred eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccc
Q 014642 33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~ 111 (421)
..-...++||=||=+-=-=++.||++++....|++.-.|.+ .+.-|++|++.--- ..++++. -||.+.-....
T Consensus 41 ~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~-----~~~~A~~~~~~ag~~~~I~~~~-gda~~~l~~l~ 114 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPE-----RAEIARENFRKAGLDDRIEVIE-GDALEVLPELA 114 (205)
T ss_dssp HHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHH-----HHHHHHHHHHHTTGGGGEEEEE-S-HHHHHHHHH
T ss_pred HHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHH-----HHHHHHHHHHhcCCCCcEEEEE-eccHhhHHHHH
Confidence 33456789999999876668888998866567777666642 23346666654221 1244444 56765322111
Q ss_pred cc--cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642 112 LS--KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS 166 (421)
Q Consensus 112 Lk--~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT 166 (421)
-. ...||.|.-+-.... -..||.-+..+|+++|-|.+-
T Consensus 115 ~~~~~~~fD~VFiDa~K~~-----------------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADKRN-----------------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HTTTTTSEEEEEEESTGGG-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCceeEEEEcccccc-----------------hhhHHHHHhhhccCCeEEEEc
Confidence 01 257999998753221 236777788899998888775
No 205
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.45 E-value=2.6e+02 Score=26.46 Aligned_cols=79 Identities=10% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCCeEEEEec-CChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCccccc-
Q 014642 37 SKHQILLVGE-GDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSEL- 112 (421)
Q Consensus 37 s~~rILLVGE-GDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~L- 112 (421)
+++++|+.|= |.=---+++|+.+. .+.+|+.+...+. ..+.+++|. +.|..+.+.+|+++......+
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR---------FKDRITEFAAEFGSDLVFPCDVASDEQIDALF 75 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH---------HHHHHHHHHHhcCCcceeeccCCCHHHHHHHH
Confidence 3578999994 22222333333331 3567776644321 112233332 234445678899887654322
Q ss_pred -----ccCcccEEEEcC
Q 014642 113 -----SKRKFDRIIFNF 124 (421)
Q Consensus 113 -----k~~~FDrIIFNF 124 (421)
...++|.+|.|=
T Consensus 76 ~~~~~~~g~iD~lvnnA 92 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSI 92 (260)
T ss_pred HHHHHHhCCCcEEEEcc
Confidence 126799999983
No 206
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=46.39 E-value=2.5e+02 Score=26.10 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=45.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||++|=+. .-..+|++.+ ..+.+++.++.+. +.+ ....++|+..|.. ..+.+|+++......+
T Consensus 11 ~k~vlVtG~s~-gIG~~la~~l~~~G~~vv~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 11 GKCAIITGAGA-GIGKEIAITFATAGASVVVSDINA-DAA-------NHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 57899999443 2334444433 1245677776542 211 1234455555654 3568999987643221
Q ss_pred ---ccCcccEEEEcCCCC
Q 014642 113 ---SKRKFDRIIFNFPHA 127 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH~ 127 (421)
....+|.||+|--..
T Consensus 82 ~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 125689999986544
No 207
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=46.24 E-value=54 Score=32.88 Aligned_cols=110 Identities=20% Similarity=0.379 Sum_probs=65.8
Q ss_pred eEEEEecC---ChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhh--HHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 40 QILLVGEG---DFSFSFALSQKFGSASNICASSLDSYETVVKKFKE--ARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 40 rILLVGEG---DFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~--a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.+|=||=| ||-| +.-..+...|++|+.+-+.+ |-+ +.+| +-..+.-.---|+.+|.+ |..
T Consensus 79 ~vLEvgcGtG~Nfkf-------y~~~p~~svt~lDpn~~mee-~~~ks~~E~----k~~~~~~fvva~ge~l~~---l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKF-------YPWKPINSVTCLDPNEKMEE-IADKSAAEK----KPLQVERFVVADGENLPQ---LAD 143 (252)
T ss_pred ceEEecccCCCCccc-------ccCCCCceEEEeCCcHHHHH-HHHHHHhhc----cCcceEEEEeechhcCcc---ccc
Confidence 46777776 3433 11123567799998654432 332 2333 333333222336666654 567
Q ss_pred CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEecCCCCcCcccHH
Q 014642 115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHKTTAPFCKWHIE 179 (421)
Q Consensus 115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~g~PY~sWnI~ 179 (421)
.++|.||--|=.+.. ||.. .-+.+...+|+|+|. |.+.|..| +|..||-.
T Consensus 144 ~s~DtVV~TlvLCSv---e~~~-----------k~L~e~~rlLRpgG~iifiEHva~-~y~~~n~i 194 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSV---EDPV-----------KQLNEVRRLLRPGGRIIFIEHVAG-EYGFWNRI 194 (252)
T ss_pred CCeeeEEEEEEEecc---CCHH-----------HHHHHHHHhcCCCcEEEEEecccc-cchHHHHH
Confidence 899999999887764 3321 223456779999999 55667776 58888644
No 208
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.07 E-value=1.7e+02 Score=27.53 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCeEEEEecCC-hhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGD-FSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGD-FSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L--- 112 (421)
++.+|+.|=++ =.--+++|+++ ..+.+|+.++.+. .+. +.++++.... ...+.+|.++..+...+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~--~~~-------~~~~~~~~~~-~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND--RMK-------KSLQKLVDEE-DLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch--HHH-------HHHHhhccCc-eeEEeCCCCCHHHHHHHHHH
Confidence 56899999763 23334444333 1356788887652 221 2234443322 34577899886543222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...++|.+|.|-
T Consensus 77 ~~~~~g~iD~lv~nA 91 (252)
T PRK06079 77 IKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHhCCCCEEEEcc
Confidence 126799999884
No 209
>PRK06172 short chain dehydrogenase; Provisional
Probab=46.04 E-value=2.4e+02 Score=25.95 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=45.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||++|=+. ....++++.+. .+.+|++++.+.. .+. .-++.|++.|.. ..+.+|+++......+
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~-~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAA-GGE-------ETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHH-HHH-------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46889998543 44555554442 2457888877532 221 223445555554 4567899876543221
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
...++|.||.|--
T Consensus 78 ~~~~~g~id~li~~ag 93 (253)
T PRK06172 78 TIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1246899998853
No 210
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=45.97 E-value=2e+02 Score=26.82 Aligned_cols=120 Identities=17% Similarity=0.052 Sum_probs=65.6
Q ss_pred eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642 32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~ 111 (421)
+.++-.+.++|=++=|.=+|++.++.. | +..+ +..|...... ..++.|++.+.-.+-.-++.-|+.+.-...
T Consensus 44 l~~~~~g~~vLDLfaGsG~lglea~sr-g-a~~v--~~vE~~~~a~---~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~- 115 (189)
T TIGR00095 44 LRPEIQGAHLLDVFAGSGLLGEEALSR-G-AKVA--FLEEDDRKAN---QTLKENLALLKSGEQAEVVRNSALRALKFL- 115 (189)
T ss_pred HHHhcCCCEEEEecCCCcHHHHHHHhC-C-CCEE--EEEeCCHHHH---HHHHHHHHHhCCcccEEEEehhHHHHHHHh-
Confidence 444445678888888887888888765 2 3344 4444333332 246678777753322234666774432111
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
.....+|-|||+=|--+. . ...+++..... ..+|+++|-|.+.+....
T Consensus 116 ~~~~~~~dvv~~DPPy~~-~---------~~~~~l~~l~~--~~~l~~~~iiv~E~~~~~ 163 (189)
T TIGR00095 116 AKKPTFDNVIYLDPPFFN-G---------ALQALLELCEN--NWILEDTVLIVVEEDREP 163 (189)
T ss_pred hccCCCceEEEECcCCCC-C---------cHHHHHHHHHH--CCCCCCCeEEEEEecCCC
Confidence 112334444444444442 1 12444443333 468999999999887653
No 211
>PRK06953 short chain dehydrogenase; Provisional
Probab=45.82 E-value=2e+02 Score=26.13 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=41.0
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc----cc
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE----LS 113 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~----Lk 113 (421)
+++|+.|=.. ....++++++ ..+.+|+.+..+.. .+++|+..++. .+.+|.++...-.. +.
T Consensus 2 ~~vlvtG~sg-~iG~~la~~L~~~G~~v~~~~r~~~------------~~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~ 67 (222)
T PRK06953 2 KTVLIVGASR-GIGREFVRQYRADGWRVIATARDAA------------ALAALQALGAE-ALALDVADPASVAGLAWKLD 67 (222)
T ss_pred ceEEEEcCCC-chhHHHHHHHHhCCCEEEEEECCHH------------HHHHHHhccce-EEEecCCCHHHHHHHHHHhc
Confidence 4688888544 3334444433 12456777765421 12344555665 57788888654322 23
Q ss_pred cCcccEEEEcCC
Q 014642 114 KRKFDRIIFNFP 125 (421)
Q Consensus 114 ~~~FDrIIFNFP 125 (421)
..++|.||+|=.
T Consensus 68 ~~~~d~vi~~ag 79 (222)
T PRK06953 68 GEALDAAVYVAG 79 (222)
T ss_pred CCCCCEEEECCC
Confidence 357899988743
No 212
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=45.74 E-value=44 Score=33.69 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=44.6
Q ss_pred cCCCCeEEEEecCChhHHHH-HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFA-LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
+-.++++.++||++...+++ +...+|-....++|.........+ +..|...+..|+.+.|..++.+. ++
T Consensus 276 ~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~--~~ 345 (399)
T cd00316 276 YLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYER--------REELLGEGTEVVDDGDLEELEEL--IR 345 (399)
T ss_pred HhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHH--------HHHhcCCCCEEEeCCCHHHHHHH--Hh
Confidence 34588999999998877776 234466443444444444332211 44566667777777776666542 23
Q ss_pred cCcccEEEE
Q 014642 114 KRKFDRIIF 122 (421)
Q Consensus 114 ~~~FDrIIF 122 (421)
....|.||-
T Consensus 346 ~~~pdl~ig 354 (399)
T cd00316 346 ELKPDLIIG 354 (399)
T ss_pred hcCCCEEEE
Confidence 334444443
No 213
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.57 E-value=59 Score=30.49 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=45.5
Q ss_pred CCeEEEEecCCh-hHHHHHHHhhC-CCCcEEeccc---cCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccc
Q 014642 38 KHQILLVGEGDF-SFSFALSQKFG-SASNICASSL---DSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSE 111 (421)
Q Consensus 38 ~~rILLVGEGDF-SFSlSLa~~~g-s~~nLvATSl---DS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~ 111 (421)
+++||+.|=+.+ +--.++|+.+. .+.+|+.++. +........-.+...-.+.+++.|.++ .+.+|.++..+...
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~ 85 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKE 85 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 468999987643 44555554441 2446666532 211000000001112234566678765 56889888764322
Q ss_pred c------ccCcccEEEEcCC
Q 014642 112 L------SKRKFDRIIFNFP 125 (421)
Q Consensus 112 L------k~~~FDrIIFNFP 125 (421)
+ .....|.||.|--
T Consensus 86 ~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 86 LLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHHHcCCCcEEEECCC
Confidence 2 1245799998853
No 214
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=45.50 E-value=78 Score=30.63 Aligned_cols=97 Identities=15% Similarity=0.273 Sum_probs=55.7
Q ss_pred ccCCCCeEEEEec-CCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccC-CcCc-c
Q 014642 34 HYSSKHQILLVGE-GDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDAT-EMKE-H 109 (421)
Q Consensus 34 ~Yss~~rILLVGE-GDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDAT-kL~~-~ 109 (421)
...++++||+.|- |-. .++..||+..| ..+++|+-.. +..+.++++|+..++.-+-. .+.+ .
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~------------~~~~~~~~lGa~~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSD------------EKVAYLKKLGFDVAFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCH------------HHHHHHHHcCCCEEEeccccccHHHHH
Confidence 3456889999994 433 45556778775 4678775421 23567778888654443221 2211 1
Q ss_pred cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
..+.++.+|.|+ + .+|. ..+..+.++|+++|.|.+
T Consensus 201 ~~~~~~gvdvv~-d--~~G~------------------~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 201 KKASPDGYDCYF-D--NVGG------------------EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHhCCCCeEEEE-E--CCCH------------------HHHHHHHHHhCcCcEEEE
Confidence 112234688765 4 4452 123455678899999874
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.49 E-value=91 Score=33.34 Aligned_cols=123 Identities=21% Similarity=0.239 Sum_probs=73.7
Q ss_pred EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEee-cccCCcCcccccccCcccEE
Q 014642 42 LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHG-VDATEMKEHSELSKRKFDRI 120 (421)
Q Consensus 42 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vlhg-VDATkL~~~~~Lk~~~FDrI 120 (421)
|.-|=|+||..+| +. ...|+++-..... +. .|+.|.+...-.+ |.|. -||.++..... ....||.|
T Consensus 300 lYCGvG~f~l~lA--~~---~~~V~gvEi~~~a-V~----~A~~NA~~n~i~N--~~f~~~~ae~~~~~~~-~~~~~d~V 366 (432)
T COG2265 300 LYCGVGTFGLPLA--KR---VKKVHGVEISPEA-VE----AAQENAAANGIDN--VEFIAGDAEEFTPAWW-EGYKPDVV 366 (432)
T ss_pred eccCCChhhhhhc--cc---CCEEEEEecCHHH-HH----HHHHHHHHcCCCc--EEEEeCCHHHHhhhcc-ccCCCCEE
Confidence 6778888776665 43 4578888776432 21 3667776665555 3333 46666544322 35689999
Q ss_pred EEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH------hCCcEEEEEee
Q 014642 121 IFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR------KHSLLRLDCVQ 194 (421)
Q Consensus 121 IFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa------~aGL~L~~~~~ 194 (421)
|.|=|-.|- + + .|.+... -+.|..-|+|+-.- ..||+ +.|+.+.+..+
T Consensus 367 vvDPPR~G~-~-----------~----~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~v~~ 420 (432)
T COG2265 367 VVDPPRAGA-D-----------R----EVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIERVQP 420 (432)
T ss_pred EECCCCCCC-C-----------H----HHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEEEEE
Confidence 999999995 1 1 1222222 23444556666433 33555 35788999999
Q ss_pred CCCCCCCCCcc
Q 014642 195 FRKEDYPGYSN 205 (421)
Q Consensus 195 F~~~~YPGY~h 205 (421)
|| .||.=+|
T Consensus 421 ~D--mFP~T~H 429 (432)
T COG2265 421 FD--MFPHTHH 429 (432)
T ss_pred ec--cCCCccc
Confidence 98 5774333
No 216
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=45.44 E-value=1.6e+02 Score=29.04 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=53.4
Q ss_pred cCCCCeEEEEecCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642 35 YSSKHQILLVGEGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 35 Yss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
..++++||+.|-|... ++..||++.| .++++|+.+.+ .++.++++|+..... .+.. .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~------------~~~~a~~~Ga~~vi~--~~~~------~ 220 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAA------------ARRLALALGAASAGG--AYDT------P 220 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChH------------HHHHHHHhCCceecc--cccc------C
Confidence 4567899999976543 3444567765 46888755421 256778889865533 2211 1
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
...+|.++- + .|. ..-+..+.++|+++|.|.+
T Consensus 221 ~~~~d~~i~-~--~~~-----------------~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 221 PEPLDAAIL-F--APA-----------------GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred cccceEEEE-C--CCc-----------------HHHHHHHHHhhCCCcEEEE
Confidence 235776542 2 221 1246667789999999855
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=43.90 E-value=1.5e+02 Score=32.14 Aligned_cols=131 Identities=20% Similarity=0.303 Sum_probs=77.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh--CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-----CCEEEeecccCCcCccc
Q 014642 38 KHQILLVGEGDFSFSFALSQKF--GSASNICASSLDSYETVVKKFKEARSNLDTLKKL-----GASIIHGVDATEMKEHS 110 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~--gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-----Gv~VlhgVDATkL~~~~ 110 (421)
..++|++|-|| -+||-+-+ ..-..|+---+|.+-.=..+ -...+..+.+. -++|+ .=||-+--+
T Consensus 290 a~~vLvlGGGD---GLAlRellkyP~~~qI~lVdLDP~miela~---~~~vlr~~N~~sf~dpRv~Vv-~dDAf~wlr-- 360 (508)
T COG4262 290 ARSVLVLGGGD---GLALRELLKYPQVEQITLVDLDPRMIELAS---HATVLRALNQGSFSDPRVTVV-NDDAFQWLR-- 360 (508)
T ss_pred cceEEEEcCCc---hHHHHHHHhCCCcceEEEEecCHHHHHHhh---hhhHhhhhccCCccCCeeEEE-eccHHHHHH--
Confidence 35899999999 34443333 22346777777753211111 01122222221 13332 224433211
Q ss_pred ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc----CcccHHHHHHhCC
Q 014642 111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF----CKWHIEELARKHS 186 (421)
Q Consensus 111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnI~~LAa~aG 186 (421)
-....||.||-++|....... -|--=..|+.+++.-|+++|.+.|-- |.|| .-|.|.+--+++|
T Consensus 361 -~a~~~fD~vIVDl~DP~tps~---------~rlYS~eFY~ll~~~l~e~Gl~VvQa--gs~y~tp~vfw~i~aTik~AG 428 (508)
T COG4262 361 -TAADMFDVVIVDLPDPSTPSI---------GRLYSVEFYRLLSRHLAETGLMVVQA--GSPYFTPRVFWRIDATIKSAG 428 (508)
T ss_pred -hhcccccEEEEeCCCCCCcch---------hhhhhHHHHHHHHHhcCcCceEEEec--CCCccCCceeeeehhHHHhCc
Confidence 124689999999998864221 12234589999999999999877653 4455 5699999999999
Q ss_pred cEE
Q 014642 187 LLR 189 (421)
Q Consensus 187 L~L 189 (421)
+..
T Consensus 429 ~~~ 431 (508)
T COG4262 429 YRV 431 (508)
T ss_pred cee
Confidence 764
No 218
>PRK06949 short chain dehydrogenase; Provisional
Probab=43.25 E-value=59 Score=29.94 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L--- 112 (421)
+++||+.|=+. -...++++.+. .+.+|++++.+. +.+ +.....|+..+. ...+.+|+++......+
T Consensus 9 ~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRV-ERL-------KELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 57899999433 34444444431 345788887763 222 122334444332 23566788876543221
Q ss_pred ---ccCcccEEEEcCCC
Q 014642 113 ---SKRKFDRIIFNFPH 126 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH 126 (421)
.....|.||.|--.
T Consensus 80 ~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 80 AETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 12468999888543
No 219
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=42.90 E-value=1.1e+02 Score=28.64 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=46.6
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|++|=+. -...++++.+. .+.+++.++..+.+. .....+.|+..|..+ .+.+|.++......+
T Consensus 7 ~k~~lItGa~~-gIG~~ia~~l~~~G~~vvi~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~ 78 (261)
T PRK08936 7 GKVVVITGGST-GLGRAMAVRFGKEKAKVVINYRSDEEE-------ANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQT 78 (261)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCCHHH-------HHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHH
Confidence 56788888655 44555555441 245677766644322 223455666667665 467899887653222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.||.|-
T Consensus 79 ~~~~~g~id~lv~~a 93 (261)
T PRK08936 79 AVKEFGTLDVMINNA 93 (261)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689888774
No 220
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.62 E-value=2.1e+02 Score=26.11 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc-c-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL-S- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L-k- 113 (421)
+.+||+.|= .=.-..+|++.+ ..+.+|++++.+... .....++|+..|..+ .+.+|.++...-..+ +
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEEN--------LKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 357888883 334555555544 235589988877432 122344555556554 578888876542211 1
Q ss_pred ----cCcccEEEEcCC
Q 014642 114 ----KRKFDRIIFNFP 125 (421)
Q Consensus 114 ----~~~FDrIIFNFP 125 (421)
....|.||.|-.
T Consensus 78 ~~~~~~~id~vi~~ag 93 (239)
T PRK07666 78 LKNELGSIDILINNAG 93 (239)
T ss_pred HHHHcCCccEEEEcCc
Confidence 146898887753
No 221
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=42.60 E-value=87 Score=29.02 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||+.| |.=...+++++.+. .+.+|+.++.+. +.+ ....+.|+..|.. ..+..|.++......+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDP-AKL-------AAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 57899999 44456677776552 356788877653 222 1234455665654 3466788886543222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
.....|.||.|-
T Consensus 81 ~~~~~~~~d~li~~a 95 (255)
T PRK07523 81 FEAEIGPIDILVNNA 95 (255)
T ss_pred HHHhcCCCCEEEECC
Confidence 125688888764
No 222
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.58 E-value=93 Score=32.03 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=47.4
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
++++|+++|=|- ..+++|+.+ ..+.+|+++..+..+.+ .+-+++|++.|++++.+-.+..+ ..
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~-------~~ 67 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQL-------KEALEELGELGIELVLGEYPEEF-------LE 67 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHH-------HHHHHHHHhcCCEEEeCCcchhH-------hh
Confidence 357899999887 555676654 34567888766654333 22356788889887665444321 24
Q ss_pred cccEEEEcCCCCC
Q 014642 116 KFDRIIFNFPHAG 128 (421)
Q Consensus 116 ~FDrIIFNFPH~G 128 (421)
.+|.||.+ |+..
T Consensus 68 ~~d~vv~~-~g~~ 79 (450)
T PRK14106 68 GVDLVVVS-PGVP 79 (450)
T ss_pred cCCEEEEC-CCCC
Confidence 57888875 5543
No 223
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=42.40 E-value=1.4e+02 Score=30.58 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=70.9
Q ss_pred CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc-c---c--
Q 014642 39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS-E---L-- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~-~---L-- 112 (421)
.+||=+|=|.=.||++|++... .|+|--.+ .+..+ .++.|++...-.++. ++.-|+.++-... . +
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~--~~av~---~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR---RVLATEIA--KPSVN---AAQYNIAANNIDNVQ-IIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC---EEEEEECC--HHHHH---HHHHHHHHcCCCcEE-EEEcCHHHHHHHHhhcccccc
Confidence 3576555555555557777642 45555444 33332 366676544322343 3455666532210 0 1
Q ss_pred -c-----cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642 113 -S-----KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS 186 (421)
Q Consensus 113 -k-----~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG 186 (421)
+ ...||.|+.|=|-.|. ..+++... +++++-|+|+..-.. -.-++..|. .+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~------------~~~~l~~l-------~~~~~ivYvsC~p~t--laRDl~~L~--~~ 326 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGL------------DPDTCKLV-------QAYERILYISCNPET--LKANLEQLS--ET 326 (353)
T ss_pred ccccccccCCCCEEEECCCCCCC------------cHHHHHHH-------HcCCcEEEEEcCHHH--HHHHHHHHh--cC
Confidence 1 2348999999998774 12222221 124666777654321 122444454 34
Q ss_pred cEEEEEeeCCCCCCCCCcc
Q 014642 187 LLRLDCVQFRKEDYPGYSN 205 (421)
Q Consensus 187 L~L~~~~~F~~~~YPGY~h 205 (421)
|.+....+|| .||.=.|
T Consensus 327 Y~l~~v~~~D--mFP~T~H 343 (353)
T TIGR02143 327 HRVERFALFD--QFPYTHH 343 (353)
T ss_pred cEEEEEEEcc--cCCCCCc
Confidence 9999999999 5885443
No 224
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=42.18 E-value=88 Score=28.39 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=42.7
Q ss_pred CeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc----
Q 014642 39 HQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L---- 112 (421)
.+||+.| |+=-...+||+.+. .+.+|+++..+..+.+ .+.+..+...+.. .++.+|.++...-..+
T Consensus 3 k~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTG-AKRGIGSAIARELLNDGYRVIATYFSGNDCA-------KDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcHHHH-------HHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3678887 55455555555542 2467888887754222 2223333333433 4567888886542211
Q ss_pred --ccCcccEEEEc
Q 014642 113 --SKRKFDRIIFN 123 (421)
Q Consensus 113 --k~~~FDrIIFN 123 (421)
....+|.||.|
T Consensus 75 ~~~~~~id~vi~~ 87 (245)
T PRK12824 75 EEEEGPVDILVNN 87 (245)
T ss_pred HHHcCCCCEEEEC
Confidence 12468988877
No 225
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.86 E-value=2.1e+02 Score=27.42 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=43.0
Q ss_pred CCeEEEEecC---Ch--hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccc
Q 014642 38 KHQILLVGEG---DF--SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 38 ~~rILLVGEG---DF--SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~ 111 (421)
++.+|+.|=+ .. ..+++|+++ +.+|+.+..+. ...+ .+++| ++.|..+.+.+|+++......
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~---Ga~V~~~~r~~--~~~~-------~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQ---GAELAFTYQGE--ALGK-------RVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhC---CCEEEEecCch--HHHH-------HHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 4678999965 33 444444442 45777765542 1111 12333 234655678899998765432
Q ss_pred c------ccCcccEEEEcC
Q 014642 112 L------SKRKFDRIIFNF 124 (421)
Q Consensus 112 L------k~~~FDrIIFNF 124 (421)
+ ...+.|.+|.|=
T Consensus 75 ~~~~~~~~~g~iD~lVnnA 93 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAI 93 (271)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 2 125789888873
No 226
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=41.50 E-value=1.3e+02 Score=29.32 Aligned_cols=97 Identities=26% Similarity=0.375 Sum_probs=53.0
Q ss_pred CCCCeEEEEecCChhHHH-HHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc-c
Q 014642 36 SSKHQILLVGEGDFSFSF-ALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL-S 113 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L-k 113 (421)
.++++||+.|-|-..-.. .+|++.| ..+|++|+-+.+ .++.++++|+......+.+....-..+ .
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~------------~~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPE------------RLELAKALGADFVINSGQDDVQEIRELTS 228 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHH------------HHHHHHHhCCCEEEcCCcchHHHHHHHhC
Confidence 457899999988665443 3466665 334888754321 244567778754433222111111111 2
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
.+.+|.|| +. +|. ...+..+..+|+++|.+.+
T Consensus 229 ~~~~d~vi-d~--~g~-----------------~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 229 GAGADVAI-EC--SGN-----------------TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCCCEEE-EC--CCC-----------------HHHHHHHHHHhhcCCEEEE
Confidence 34688665 32 442 0223456678899998764
No 227
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=40.64 E-value=94 Score=28.19 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=38.1
Q ss_pred eEEEEe-cCChh--HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCcc
Q 014642 40 QILLVG-EGDFS--FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEH 109 (421)
Q Consensus 40 rILLVG-EGDFS--FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~ 109 (421)
++|++| -|... ++.-|++.. +.+|+-++..+ ..-+.....+++|++.|++|. +.+|+++..+-
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~-----~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v 68 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSG-----APSAEAEAAIRELESAGARVEYVQCDVTDPEAV 68 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSG-----GGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCC-----CccHHHHHHHHHHHhCCCceeeeccCccCHHHH
Confidence 467776 55443 333344443 66888888874 112345568999999999865 56999987754
No 228
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=40.54 E-value=2.9e+02 Score=25.27 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=43.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc-c
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL-S 113 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L-k 113 (421)
.+++||++| |.=--..+|++.+- .+.+++++.-.+.+.+ ++.++.|+..|.++ ...+|.++......+ .
T Consensus 5 ~~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 5 NGKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAA-------ENLVNELGKEGHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHH-------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357899999 44445555665541 2446665432222221 22345677666544 467888876543211 1
Q ss_pred -----cCcccEEEEc
Q 014642 114 -----KRKFDRIIFN 123 (421)
Q Consensus 114 -----~~~FDrIIFN 123 (421)
..+.|.||.|
T Consensus 77 ~~~~~~~~id~vi~~ 91 (247)
T PRK12935 77 EAVNHFGKVDILVNN 91 (247)
T ss_pred HHHHHcCCCCEEEEC
Confidence 1467888866
No 229
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=39.65 E-value=3.9 Score=37.79 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=21.0
Q ss_pred CChhHHHHHHHhhCCCCcEEeccccCHHH
Q 014642 47 GDFSFSFALSQKFGSASNICASSLDSYET 75 (421)
Q Consensus 47 GDFSFSlSLa~~~gs~~nLvATSlDS~ee 75 (421)
||+|||+||....+++ +|=||.-++++
T Consensus 96 g~LSFslAlLD~~~nG--vVltsI~~Re~ 122 (151)
T PF14584_consen 96 GDLSFSLALLDDNNNG--VVLTSIHSREE 122 (151)
T ss_pred ccceeeeEEEeCCCCE--EEEEeeecCCC
Confidence 8999999999876544 77777766654
No 230
>PRK12743 oxidoreductase; Provisional
Probab=39.50 E-value=3.2e+02 Score=25.43 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
.++||+.|=.. .-..++++++ ..+.+|+.+...+.+.+ +.-.++|+..|.. ..+.+|.++......+
T Consensus 2 ~k~vlItGas~-giG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDS-GIGKACALLLAQQGFDIGITWHSDEEGA-------KETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCChHHH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45789999544 2445555444 12456766644333332 2234466667754 4567898886543221
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.||+|-
T Consensus 74 ~~~~~~~id~li~~a 88 (256)
T PRK12743 74 LIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 125689998883
No 231
>PRK07062 short chain dehydrogenase; Provisional
Probab=39.49 E-value=97 Score=28.88 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEE-EeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASI-IHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~V-lhgVDATkL~~~~~L- 112 (421)
++.+|+.|=+. ....++++.+ ..+.+|++++.+.. .+ ....++|++. +..+ .+.+|.++......+
T Consensus 8 ~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEE-RL-------ASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 46789999543 4555666555 23567888887632 22 1223344443 3343 567888886543221
Q ss_pred -----ccCcccEEEEcC
Q 014642 113 -----SKRKFDRIIFNF 124 (421)
Q Consensus 113 -----k~~~FDrIIFNF 124 (421)
...+.|.+|.|=
T Consensus 79 ~~~~~~~g~id~li~~A 95 (265)
T PRK07062 79 AAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 125689988874
No 232
>PRK07102 short chain dehydrogenase; Provisional
Probab=39.43 E-value=3.1e+02 Score=25.20 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=43.8
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCE-EEeecccCCcCcccccc--
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GAS-IIHGVDATEMKEHSELS-- 113 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~-VlhgVDATkL~~~~~Lk-- 113 (421)
++||+.|=.. .-..++++.+ ..+.+|+++..+.. . .....+.++.. +.. ..+.+|.++..+...+-
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~~Vi~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGARLYLAARDVE-R-------LERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCCEEEEEeCCHH-H-------HHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 4788998433 2333344333 23457888877632 1 12233444433 333 35678888876533221
Q ss_pred -cCcccEEEEcCCCCC
Q 014642 114 -KRKFDRIIFNFPHAG 128 (421)
Q Consensus 114 -~~~FDrIIFNFPH~G 128 (421)
...+|.||.|=.+.+
T Consensus 73 ~~~~~d~vv~~ag~~~ 88 (243)
T PRK07102 73 LPALPDIVLIAVGTLG 88 (243)
T ss_pred HhhcCCEEEECCcCCC
Confidence 135799998865544
No 233
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=39.39 E-value=1.1e+02 Score=28.62 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCE-EEeecccCCcCccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKK-LGAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~-VlhgVDATkL~~~~~L-- 112 (421)
+++||++|=+ =-.-+++|+.+. .+.+|+.++..+.+.+. ...+.|+. .|.. ..+.+|.++......+
T Consensus 8 ~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (260)
T PRK08416 8 GKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEAN-------KIAEDLEQKYGIKAKAYPLNILEPETYKELFK 79 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 5678888844 334455554441 35577776554443322 22334443 3543 4678899886543222
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
...++|.||.|=
T Consensus 80 ~~~~~~g~id~lv~nA 95 (260)
T PRK08416 80 KIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHhcCCccEEEECc
Confidence 125689999885
No 234
>PRK12939 short chain dehydrogenase; Provisional
Probab=38.82 E-value=89 Score=28.46 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcccccc-
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSELS- 113 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~Lk- 113 (421)
.+.+||+.|= +=--..+|++.+. .+.+|++++.+. +.+. ...+.|+..+.. ..+-+|.++......+-
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~-~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLA-AEAR-------ELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCH-HHHH-------HHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 3568898884 3355566665552 346788885542 2221 223455555544 45678988765432221
Q ss_pred -----cCcccEEEEcC
Q 014642 114 -----KRKFDRIIFNF 124 (421)
Q Consensus 114 -----~~~FDrIIFNF 124 (421)
..+.|.||.|-
T Consensus 77 ~~~~~~~~id~vi~~a 92 (250)
T PRK12939 77 AAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHcCCCCEEEECC
Confidence 15789998884
No 235
>PRK06182 short chain dehydrogenase; Validated
Probab=38.68 E-value=2e+02 Score=27.04 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=44.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+++||+.|=+. -...+|++.+ ..+.+|++++.+. +. ++++...++.+ +..|.++......+
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~-~~-----------l~~~~~~~~~~-~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRV-DK-----------MEDLASLGVHP-LSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCH-HH-----------HHHHHhCCCeE-EEeeCCCHHHHHHHHHHH
Confidence 46899999543 3566666654 2356888887653 22 22333446554 45788876543221
Q ss_pred --ccCcccEEEEcCC
Q 014642 113 --SKRKFDRIIFNFP 125 (421)
Q Consensus 113 --k~~~FDrIIFNFP 125 (421)
.....|.||.|-.
T Consensus 69 ~~~~~~id~li~~ag 83 (273)
T PRK06182 69 IAEEGRIDVLVNNAG 83 (273)
T ss_pred HHhcCCCCEEEECCC
Confidence 1246899998854
No 236
>PRK07478 short chain dehydrogenase; Provisional
Probab=38.62 E-value=3.2e+02 Score=25.23 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=45.4
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. -..+++++.+. .+.+|+.++.+. +. ...-.+.|++.|.. ..+.+|.++..+...+
T Consensus 6 ~k~~lItGas~-giG~~ia~~l~~~G~~v~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASS-GIGRAAAKLFAREGAKVVVGARRQ-AE-------LDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45788888653 23334444331 245788887653 22 22234556666544 4567898886643222
Q ss_pred ---ccCcccEEEEcCCC
Q 014642 113 ---SKRKFDRIIFNFPH 126 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH 126 (421)
...+.|.||.|---
T Consensus 77 ~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 77 AVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 12478999988643
No 237
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=37.91 E-value=2.7e+02 Score=25.29 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||+.|=+.+ ...+|++.+ ..+.+|++++.+.. . ....++.|++.+.. .++..|.++...-..+
T Consensus 6 ~~~ilItGasg~-iG~~l~~~l~~~g~~V~~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 6 GRVALVTGAARG-IGRAIAVRLAADGAEVIVVDICGD-D-------AAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 458999994432 344454443 22457888877632 1 22334556666543 3456677765432111
Q ss_pred ---ccCcccEEEEcCCCCC
Q 014642 113 ---SKRKFDRIIFNFPHAG 128 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH~G 128 (421)
+...+|.||.|-.-.+
T Consensus 77 ~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHhCCCCEEEECCCCCC
Confidence 1136898877754433
No 238
>PRK07109 short chain dehydrogenase; Provisional
Probab=37.91 E-value=90 Score=31.16 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
+++||+.|=+. -..+++++.+ ..+.+|++++.+. +. .++..+++++.|+.+ .+.+|.++......+
T Consensus 8 ~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~-~~-------l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 8 RQVVVITGASA-GVGRATARAFARRGAKVVLLARGE-EG-------LEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46789998544 4555555554 2356788887652 22 223455667777665 567898887654322
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
...++|.||.|
T Consensus 79 ~~~~~g~iD~lInn 92 (334)
T PRK07109 79 AEEELGPIDTWVNN 92 (334)
T ss_pred HHHHCCCCCEEEEC
Confidence 12478988877
No 239
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=37.82 E-value=39 Score=28.07 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=56.0
Q ss_pred hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cccc-cCcccEEEEcCCCC
Q 014642 50 SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SELS-KRKFDRIIFNFPHA 127 (421)
Q Consensus 50 SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~Lk-~~~FDrIIFNFPH~ 127 (421)
.++..||++.| .+|++|+.+.. .++.++++|+.....-+..++.+. ..+. ++.+|.||=. +
T Consensus 4 ~~a~q~ak~~G--~~vi~~~~~~~------------k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~---~ 66 (130)
T PF00107_consen 4 LMAIQLAKAMG--AKVIATDRSEE------------KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC---V 66 (130)
T ss_dssp HHHHHHHHHTT--SEEEEEESSHH------------HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES---S
T ss_pred HHHHHHHHHcC--CEEEEEECCHH------------HHHHHHhhcccccccccccccccccccccccccceEEEEe---c
Confidence 35677888887 78999987532 266788999877766666644332 1222 3578876543 3
Q ss_pred CCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 128 GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 128 G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
|. ..-+..+.++|+++|.+.+-=..+
T Consensus 67 g~-----------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 GS-----------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SS-----------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred Cc-----------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 31 023556777899999977765544
No 240
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=37.68 E-value=51 Score=27.97 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=35.6
Q ss_pred eEEEEecCChhHHHHHHHh----hCC-CCcEEecccc---CHHHHHHhhhhHHHHHHHHH-hCCCEEEee
Q 014642 40 QILLVGEGDFSFSFALSQK----FGS-ASNICASSLD---SYETVVKKFKEARSNLDTLK-KLGASIIHG 100 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~----~gs-~~nLvATSlD---S~eeL~~KY~~a~~Nl~~Lr-~~Gv~Vlhg 100 (421)
.||+++-| +||.+++.. .|. ..++.|-++. +.+++.++ .++-++.+. ..|+.|+-+
T Consensus 1 giii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~~vlil~D 65 (116)
T PF03610_consen 1 GIIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEK---LEEAIEELDEGDGVLILTD 65 (116)
T ss_dssp EEEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHH---HHHHHHHCCTTSEEEEEES
T ss_pred CEEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHH---HHHHHHhccCCCcEEEEee
Confidence 48999999 888888765 366 5688888875 45555554 333455553 335555543
No 241
>PRK07791 short chain dehydrogenase; Provisional
Probab=37.59 E-value=1.2e+02 Score=29.35 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHH-HhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVV-KKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL- 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~-~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L- 112 (421)
+++++|+.|=+. ..-.++|+.+ ..+.+|+.+..+....-. ..=....+.+++|++.|.. +.+.+|.++......+
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 356889998554 5556665554 235577777654310000 0000123345667766654 4678899886653221
Q ss_pred -----ccCcccEEEEc
Q 014642 113 -----SKRKFDRIIFN 123 (421)
Q Consensus 113 -----k~~~FDrIIFN 123 (421)
...+.|.+|.|
T Consensus 84 ~~~~~~~g~id~lv~n 99 (286)
T PRK07791 84 DAAVETFGGLDVLVNN 99 (286)
T ss_pred HHHHHhcCCCCEEEEC
Confidence 12578999888
No 242
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=37.41 E-value=1.9e+02 Score=25.79 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=49.8
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
.+.+||=+|=|.=.++..|++. +..++|.-.|. .+. ..+++|+.. ..++++ ..-|+.++.. ....
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~--~~~---~~~~~~~~~--~~~v~i-i~~D~~~~~~----~~~~ 77 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER---AARVTAIEIDP--RLA---PRLREKFAA--ADNLTV-IHGDALKFDL----PKLQ 77 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCH--HHH---HHHHHHhcc--CCCEEE-EECchhcCCc----cccC
Confidence 4568999999999999999876 24677777763 222 223444432 124554 4567777642 2346
Q ss_pred ccEEEEcCCCC
Q 014642 117 FDRIIFNFPHA 127 (421)
Q Consensus 117 FDrIIFNFPH~ 127 (421)
||.|+-|.|.-
T Consensus 78 ~d~vi~n~Py~ 88 (169)
T smart00650 78 PYKVVGNLPYN 88 (169)
T ss_pred CCEEEECCCcc
Confidence 99999999963
No 243
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=37.38 E-value=73 Score=27.58 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=40.9
Q ss_pred eEEEEecCChhHHHHHHHhh----CCCCcEEecccc---CHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCC
Q 014642 40 QILLVGEGDFSFSFALSQKF----GSASNICASSLD---SYETVVKKFKEARSNLDTLKK-LGASIIHGVDATE 105 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~----gs~~nLvATSlD---S~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATk 105 (421)
+||+++=|+ ||.+|.... |...+|.|-++. +.+++.++.. +.++++.+ .|+.|+-++=.-.
T Consensus 3 ~ili~sHG~--~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~---~~i~~~~~~~~vivltDl~GGS 71 (116)
T TIGR00824 3 AIIISGHGQ--AAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYN---AALADLDTEEEVLFLVDIFGGS 71 (116)
T ss_pred EEEEEecHH--HHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHH---HHHHhcCCCCCEEEEEeCCCCC
Confidence 699999999 788886543 666678888874 5667766544 44666643 4677776653333
No 244
>PRK07035 short chain dehydrogenase; Provisional
Probab=36.34 E-value=3.5e+02 Score=24.92 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=44.9
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-c-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-S- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-k- 113 (421)
+.+||+.|=+.+ ...+|++.+ ..+.+|+.++.+. +. .+...++|.+.|.. ..+.+|.++......+ .
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKL-DG-------CQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 357888885543 233444333 1245788887653 22 22345566666543 3467888877653222 1
Q ss_pred ----cCcccEEEEcCCC
Q 014642 114 ----KRKFDRIIFNFPH 126 (421)
Q Consensus 114 ----~~~FDrIIFNFPH 126 (421)
....|.||.|-..
T Consensus 79 ~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 79 IRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2468999987643
No 245
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.72 E-value=1.3e+02 Score=28.05 Aligned_cols=80 Identities=9% Similarity=0.111 Sum_probs=46.0
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+.+ -..++|+.+. .+.+++.+...+.+. ..+.++.|+..|.+ ..+.+|.++......+
T Consensus 8 ~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 8 GQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDG-------LAETAEHIEAAGRRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 568888885542 4445554431 245788777654322 22345566666644 3567898876542211
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
...+.|.||.|=-
T Consensus 80 ~~~~~g~id~li~~ag 95 (254)
T PRK06114 80 TEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1256899998853
No 246
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.39 E-value=1.2e+02 Score=27.55 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCeEEEEec-CChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc--
Q 014642 38 KHQILLVGE-GDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGE-GDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-- 112 (421)
+.++|++|= |..-.+ +++.+ ..+.+|+.++.+. +.+ ....++++..|.+ ..+.+|.++......+
T Consensus 5 ~~~~lItG~~g~iG~~--~a~~l~~~G~~vi~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRA--MAEYLAQKGAKLALIDLNQ-EKL-------EEAVAECGALGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHH--HHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 568899984 554444 33332 1245677776653 222 2234455555655 4578898875432111
Q ss_pred ----ccCcccEEEEcCC
Q 014642 113 ----SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ----k~~~FDrIIFNFP 125 (421)
....+|.||.|--
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1256899998853
No 247
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=35.29 E-value=84 Score=32.51 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=34.1
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
|.....|++||=--..|. | +..|++-|..+|+++|.+.|.=..+-
T Consensus 224 l~d~svDvaV~CLSLMgt------------n---~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMGT------------N---LADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred CccCcccEEEeeHhhhcc------------c---HHHHHHHHHHHhccCceEEEEehhhh
Confidence 344667777776555553 1 57999999999999999999877664
No 248
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=34.84 E-value=3.8e+02 Score=27.71 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=77.0
Q ss_pred eeeeccC-CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642 30 KWIMHYS-SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE 108 (421)
Q Consensus 30 K~i~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~ 108 (421)
+|+.-|. +..++|=||=|.==+|-|-++ +| +..++|+=.|+...-.. ++|+ +.+|+.- -+-+.....
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~DiDp~AV~aa-----~eNa---~~N~v~~--~~~~~~~~~ 221 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVDIDPQAVEAA-----RENA---RLNGVEL--LVQAKGFLL 221 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHH-cC-CceEEEecCCHHHHHHH-----HHHH---HHcCCch--hhhcccccc
Confidence 3443333 467899998885444444333 44 66799999997654433 3332 2334432 001111111
Q ss_pred ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642 109 HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL 188 (421)
Q Consensus 109 ~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~ 188 (421)
.....+.+||.||-|= .+. -+.+| -.-...+|+|+|.+.++=--.. ..+.|.+.....||.
T Consensus 222 ~~~~~~~~~DvIVANI-LA~------------vl~~L----a~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~ 282 (300)
T COG2264 222 LEVPENGPFDVIVANI-LAE------------VLVEL----APDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFE 282 (300)
T ss_pred hhhcccCcccEEEehh-hHH------------HHHHH----HHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCe
Confidence 1122347999999986 222 12344 4445568999999888743222 367888888889999
Q ss_pred EEEEe
Q 014642 189 RLDCV 193 (421)
Q Consensus 189 L~~~~ 193 (421)
+.+..
T Consensus 283 v~~~~ 287 (300)
T COG2264 283 VVEVL 287 (300)
T ss_pred EeEEE
Confidence 98774
No 249
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=34.82 E-value=1.3e+02 Score=24.64 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=60.4
Q ss_pred EEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccccCcccE
Q 014642 41 ILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 41 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~~~FDr 119 (421)
+|..=||.-++..-++..+. ..+|-||-+=.-.. .+.+ .+.+++|.+.|..| .|+.+-
T Consensus 9 ~ltfDdg~~~~~~~~~~~l~-~~~i~at~fv~~~~-~~~~---~~~l~~l~~~G~ei~~H~~~H---------------- 67 (123)
T PF01522_consen 9 ALTFDDGYRDNYDRLLPLLK-KYGIPATFFVIGSW-VERY---PDQLRELAAAGHEIGNHGWSH---------------- 67 (123)
T ss_dssp EEEEESHCHTHHHHHHHHHH-HTT--EEEEE-HHH-HHHH---HHHHHHHHHTT-EEEEE-SSS----------------
T ss_pred EEEEecCchhhHHHHHHHHH-hcccceeeeecccc-cccc---cccchhHHHHHHHHHhcCCcc----------------
Confidence 45556666566666665542 23577777765443 3333 35578888888654 344221
Q ss_pred EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc--cHHHHHHhCCcEE
Q 014642 120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW--HIEELARKHSLLR 189 (421)
Q Consensus 120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW--nI~~LAa~aGL~L 189 (421)
|.......++....|...++.|...+......++ .||..+ ++..++++.||..
T Consensus 68 -----~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~f~------------~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 68 -----PNLSTLSPEELRREIERSREILEEITGRPPKGFR------------YPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp -----SCGGGS-HHHHHHHHHHHHHHHHHHHSSEESEEE-------------GGGEECHHHHHHHHHTT-EE
T ss_pred -----cccccCCHHHHHHHHHHHHHHHHHHhCCCCcEEE------------CCCCCCCHHHHHHHHHcCCCc
Confidence 1112223455667888888888888643333322 366554 5667888999875
No 250
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.78 E-value=1.2e+02 Score=27.79 Aligned_cols=78 Identities=14% Similarity=0.295 Sum_probs=44.5
Q ss_pred CeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc----
Q 014642 39 HQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L---- 112 (421)
+.||++|=.. ....+|++.+- .+.+|+++.....+. ....++.++..+.. ..+.+|.++......+
T Consensus 3 k~vlItG~sg-~iG~~la~~L~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRR-GIGLGIARALAAAGFDLAINDRPDDEE-------LAATQQELRALGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecCchhH-------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4688888544 45556665541 245677766543322 22345566655543 4557899885542221
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
.....|.||.|-
T Consensus 75 ~~~~~~id~vi~~a 88 (256)
T PRK12745 75 QAAWGRIDCLVNNA 88 (256)
T ss_pred HHhcCCCCEEEECC
Confidence 125689999883
No 251
>PRK12937 short chain dehydrogenase; Provisional
Probab=34.68 E-value=3.5e+02 Score=24.54 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=42.7
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
+.+||+.|=+. --..+|++.+. .+.+++.+...+... ....++.|+..|..| .+.+|.++..+...+
T Consensus 5 ~~~vlItG~~~-~iG~~la~~l~~~g~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASR-GIGAAIARRLAADGFAVAVNYAGSAAA-------ADELVAEIEAAGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCCHHH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 45788888432 22333444331 245677766554322 223455666666543 457888876543221
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
.....|.||.|=
T Consensus 77 ~~~~~~~id~vi~~a 91 (245)
T PRK12937 77 AETAFGRIDVLVNNA 91 (245)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689888874
No 252
>PRK08339 short chain dehydrogenase; Provisional
Probab=34.20 E-value=4.1e+02 Score=25.14 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCE-EEeecccCCcCccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~-VlhgVDATkL~~~~~L-- 112 (421)
++++|+.|=+. ..-+++|+.+ ..+.+|+.++.+. +.+ ++..++|++. |.. ..+.+|+++......+
T Consensus 8 ~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 8 GKLAFTTASSK-GIGFGVARVLARAGADVILLSRNE-ENL-------KKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56789998654 3445555444 1356888887763 222 2223344432 433 4578899987543222
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
.....|.+|.|
T Consensus 79 ~~~~~g~iD~lv~n 92 (263)
T PRK08339 79 ELKNIGEPDIFFFS 92 (263)
T ss_pred HHHhhCCCcEEEEC
Confidence 12468988877
No 253
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=34.20 E-value=1.5e+02 Score=27.17 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=43.1
Q ss_pred CeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc----
Q 014642 39 HQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L---- 112 (421)
++||++|=+ =....+|++.+- .+.+++.+.-.+.+.+ ....+.++..+. ...+.+|.++......+
T Consensus 3 k~ilItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06947 3 KVVLITGAS-RGIGRATAVLAAARGWSVGINYARDAAAA-------EETADAVRAAGGRACVVAGDVANEADVIAMFDAV 74 (248)
T ss_pred cEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCCHHHH-------HHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHH
Confidence 478999944 355555555542 2446665543333322 223444555553 34677888877653221
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
...+.|.||.|=
T Consensus 75 ~~~~~~id~li~~a 88 (248)
T PRK06947 75 QSAFGRLDALVNNA 88 (248)
T ss_pred HHhcCCCCEEEECC
Confidence 124689999885
No 254
>PLN02253 xanthoxin dehydrogenase
Probab=34.00 E-value=97 Score=29.22 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+++||+.| |.=....+|++.+. .+.+|+.+..+.. . .....+.|...+-...+.+|.++......+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDD-L-------GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHH-H-------HHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 46789888 44466777776652 3567887765422 1 112233443322234677898887553221
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
...+.|.||.|=
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 124689988874
No 255
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.00 E-value=3.3e+02 Score=26.58 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. .--+++|+.+ ..+.+|+.+...+.+. .+..+++|+..|..| .+.+|+++......+
T Consensus 12 ~k~~lVTGas~-gIG~~ia~~L~~~Ga~Vv~~~~~~~~~-------~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 12 GKVAVVTGAAA-GLGRAEALGLARLGATVVVNDVASALD-------ASDVLDEIRAAGAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEecCCchhH-------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 56889998765 2233333333 1245677665543221 234456677777654 677888875433221
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
...+.|.||.|=
T Consensus 84 ~~~~g~iD~li~nA 97 (306)
T PRK07792 84 AVGLGGLDIVVNNA 97 (306)
T ss_pred HHHhCCCCEEEECC
Confidence 125789999884
No 256
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.91 E-value=1e+02 Score=27.87 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=43.6
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEec-cccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICAS-SLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSELS- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvAT-SlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~Lk- 113 (421)
+++||++|= .-.-..+|++.+. .+..++.+ ..+.. . .....+.|+..+.. ..+.+|.++......+-
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEE-A-------AQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357888883 3233444444431 24567776 55432 1 12233445544543 46778998876532221
Q ss_pred -----cCcccEEEEcCCCC
Q 014642 114 -----KRKFDRIIFNFPHA 127 (421)
Q Consensus 114 -----~~~FDrIIFNFPH~ 127 (421)
...+|.||+|=-..
T Consensus 76 ~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHhCCCCEEEECCCcC
Confidence 13689999885443
No 257
>PRK07890 short chain dehydrogenase; Provisional
Probab=33.71 E-value=1.3e+02 Score=27.63 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=45.3
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc--
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-- 112 (421)
++++||++|=+. -...+|++.+ ..+.+|+.++.+. +.+ +...++|+..|.. ..+.+|.++...-..+
T Consensus 4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTA-ERL-------DEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 467899999654 4555555544 2345788777643 222 2234555555543 5678888875532111
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
+..+.|.||.|=
T Consensus 75 ~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 75 LALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHcCCccEEEECC
Confidence 124689888773
No 258
>PRK05867 short chain dehydrogenase; Provisional
Probab=33.54 E-value=1.3e+02 Score=27.88 Aligned_cols=78 Identities=9% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. ....++++.+ ..+.+|+.++.+. +.+ +...++|+..|.+ ..+.+|.++......+
T Consensus 9 ~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 9 GKRALITGAST-GIGKRVALAYVEAGAQVAIAARHL-DAL-------EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCH-HHH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 56899999654 3455555544 2356888887653 222 2234556665544 4567888876543222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.+|.|=
T Consensus 80 ~~~~~g~id~lv~~a 94 (253)
T PRK05867 80 VTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 125789988883
No 259
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=2.9e+02 Score=27.83 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=68.7
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH----------HHhCCCEEEeecccC
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT----------LKKLGASIIHGVDAT 104 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~----------Lr~~Gv~VlhgVDAT 104 (421)
-.++.+.|=||-|.==-|.+.++..+ +.-.++-..|-..+|.+ | ++.||+. |++--..+ +-=|+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg-~~g~~~~GIEh~~eLVe-~--Sk~nl~k~i~~~e~~~~~~~~~l~i-vvGDgr 154 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVG-ATGGNVHGIEHIPELVE-Y--SKKNLDKDITTSESSSKLKRGELSI-VVGDGR 154 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhc-CCCccccchhhhHHHHH-H--HHHHHHhhccCchhhhhhccCceEE-EeCCcc
Confidence 45677889999998888888887664 22344456677777776 2 4556543 33323333 355777
Q ss_pred CcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642 105 EMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 105 kL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
+.... ..+||+| |+|..-. +.+++||. .|+++|+|.|-.-+
T Consensus 155 ~g~~e----~a~YDaI-----hvGAaa~-------~~pq~l~d--------qL~~gGrllip~~~ 195 (237)
T KOG1661|consen 155 KGYAE----QAPYDAI-----HVGAAAS-------ELPQELLD--------QLKPGGRLLIPVGQ 195 (237)
T ss_pred ccCCc----cCCcceE-----EEccCcc-------ccHHHHHH--------hhccCCeEEEeecc
Confidence 76554 4789999 6774222 24666664 68889999998764
No 260
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.64 E-value=1.1e+02 Score=29.14 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=41.3
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+++||+.|=+. -...+|++.+ ..+.+|++++.+.. .+++|+..|+.+ +.+|.++......+
T Consensus 4 ~k~vlItGasg-giG~~la~~l~~~G~~Vi~~~r~~~------------~~~~l~~~~~~~-~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSS-GIGAYCARALQSDGWRVFATCRKEE------------DVAALEAEGLEA-FQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHH------------HHHHHHHCCceE-EEccCCCHHHHHHHHHHH
Confidence 45789998633 3344455444 23568998877531 133455556654 56788876532211
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
.....|.||.|
T Consensus 70 ~~~~~g~id~li~~ 83 (277)
T PRK05993 70 LELSGGRLDALFNN 83 (277)
T ss_pred HHHcCCCccEEEEC
Confidence 12468988877
No 261
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.46 E-value=3.8e+02 Score=24.26 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=57.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+++||+.|=+.+ -..++++.+ ..+.+|+.++.+.. .+ ....+.+...|.......|.++-.....+
T Consensus 5 ~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNEN-KL-------KRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 468999987653 233333333 23457888877532 21 11123334444444566777765432111
Q ss_pred --ccCcccEEEEcCCCCCCCCCc---ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642 113 --SKRKFDRIIFNFPHAGFHGKE---EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH 167 (421)
Q Consensus 113 --k~~~FDrIIFNFPH~G~~GkE---d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL 167 (421)
.....|.||+|=........+ +-...+..|-.-....++.+.++++++|.|.++-
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 124579998875433211111 1122233332222333444555666677655543
No 262
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=32.44 E-value=1.4e+02 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+.+||+.|=.. .-..+|++.+. .+.+|+.++.+. +.+ +...+.++..|.. ..+.+|.++...-..+
T Consensus 12 ~k~ilItGa~g-~IG~~la~~l~~~G~~V~~~~r~~-~~~-------~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSR-GLGLQIAEALGEAGARVVLSARKA-EEL-------EEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899998332 33444444431 245777776643 211 1233445555554 4678898886543111
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
....+|.||+|=
T Consensus 83 ~~~~~~~id~vi~~a 97 (259)
T PRK08213 83 TLERFGHVDILVNNA 97 (259)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689999984
No 263
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=32.33 E-value=91 Score=29.84 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCCeEEEEecCChhHH-HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-ccc-c
Q 014642 37 SKHQILLVGEGDFSFS-FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SEL-S 113 (421)
Q Consensus 37 s~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~L-k 113 (421)
++++||+.|.|-.--. ..+|++.| ..+|++++.+. +.++.++++|+......+ ..... ..+ .
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~------------~r~~~a~~~Ga~~~i~~~--~~~~~~~~~~~ 184 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSP------------DRRELALSFGATALAEPE--VLAERQGGLQN 184 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCH------------HHHHHHHHcCCcEecCch--hhHHHHHHHhC
Confidence 5789999999876533 33567765 33488874322 235566778875444322 11110 011 2
Q ss_pred cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
...+|.|| + .+|. ..-+..+.++|+++|.|.+
T Consensus 185 ~~g~d~vi-d--~~G~-----------------~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 185 GRGVDVAL-E--FSGA-----------------TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred CCCCCEEE-E--CCCC-----------------hHHHHHHHHHhcCCCEEEE
Confidence 34588764 3 3442 0224456678899998764
No 264
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=32.23 E-value=77 Score=32.98 Aligned_cols=114 Identities=16% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCcEEeccccCHHHHHHhhhhHHHHH-------HHHHhCCCEEEeecccCCcCc-cc------ccccCcccEEEEcCCCC
Q 014642 62 ASNICASSLDSYETVVKKFKEARSNL-------DTLKKLGASIIHGVDATEMKE-HS------ELSKRKFDRIIFNFPHA 127 (421)
Q Consensus 62 ~~nLvATSlDS~eeL~~KY~~a~~Nl-------~~Lr~~Gv~VlhgVDATkL~~-~~------~Lk~~~FDrIIFNFPH~ 127 (421)
+.++..-++--.++|.++||++-+.| ++++..|-.-.|.|-....-. .+ .++-+.+||-+||-=
T Consensus 217 G~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~heYiE~~ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRAvfnt~-- 294 (371)
T KOG3889|consen 217 GDTVLVDGFYCAEKLRNESPEDFEILCNVKISHEYIEGSGESHIHSVSLEPPVIERPSFGEITQIRFNPYDRAVFNTL-- 294 (371)
T ss_pred CceEEEehHHHHHHHHhhChHhhhHhhcCccchhhhcCCCcccceeeccCCceEecCCCCceEEEEecccchhhhccC--
Confidence 45677777777899999999875544 567776766666664333321 11 224478899998842
Q ss_pred CCCCCcccHHHHHHhHHHHHHHHHhhHhcc----CCCCeEEEEecCCCC--cCcccHHHHHHhCCcEEEEEeeCCCCCCC
Q 014642 128 GFHGKEEDDEVIRMHMSLVEGFFRNASGML----RPRGEVHVSHKTTAP--FCKWHIEELARKHSLLRLDCVQFRKEDYP 201 (421)
Q Consensus 128 G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL----~~~GeIHVTLk~g~P--Y~sWnI~~LAa~aGL~L~~~~~F~~~~YP 201 (421)
++.-+..|+.+-++++ .|+-++.|.|+.|.- .+.|.|-. ..+.|-
T Consensus 295 --------------p~ae~~~fY~a~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRvLH---------------gRe~ft 345 (371)
T KOG3889|consen 295 --------------PAAETIKFYEAYRKLSKICRNPDNSIEIKLRPGSVIFIDNWRVLH---------------GRESFT 345 (371)
T ss_pred --------------CHHHHHHHHHHHHHHHHHhcCccceEEEEecCceEEEEeceeEec---------------Cccccc
Confidence 2344567777766654 488999999999853 57886532 236788
Q ss_pred CCccc
Q 014642 202 GYSNK 206 (421)
Q Consensus 202 GY~hK 206 (421)
||+..
T Consensus 346 GyRqm 350 (371)
T KOG3889|consen 346 GYRQM 350 (371)
T ss_pred chhhh
Confidence 88864
No 265
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=31.96 E-value=47 Score=31.07 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=59.0
Q ss_pred EEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccccCcccEEE
Q 014642 43 LVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSKRKFDRII 121 (421)
Q Consensus 43 LVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~~~FDrII 121 (421)
.-|=|.+++- ||.+. +..+|+--.+. .. +.-.+.|++.|...+ +.|+.+ |+.+.-........+||.|.
T Consensus 50 FaGSGalGlE-ALSRG---A~~v~fVE~~~--~a---~~~i~~N~~~l~~~~~~~v~~~-d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 50 FAGSGALGLE-ALSRG---AKSVVFVEKNR--KA---IKIIKKNLEKLGLEDKIRVIKG-DAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp T-TTSHHHHH-HHHTT----SEEEEEES-H--HH---HHHHHHHHHHHT-GGGEEEEES-SHHHHHHHHHHCTS-EEEEE
T ss_pred CCccCccHHH-HHhcC---CCeEEEEECCH--HH---HHHHHHHHHHhCCCcceeeecc-CHHHHHHhhcccCCCceEEE
Confidence 3467777765 45543 44555544442 22 234678999888665 555544 54433222122468999999
Q ss_pred EcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 122 FNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 122 FNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
.+=|-.-. .. ..++|..... ..+|+++|-|.|-+...
T Consensus 120 lDPPY~~~--------~~--~~~~l~~l~~--~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDPPYAKG--------LY--YEELLELLAE--NNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E--STTSC--------HH--HHHHHHHHHH--TTSEEEEEEEEEEEETT
T ss_pred ECCCcccc--------hH--HHHHHHHHHH--CCCCCCCEEEEEEecCC
Confidence 99887652 11 2344444432 47999999999999655
No 266
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=31.95 E-value=80 Score=32.32 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeecccCCcCccccccc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKK--LGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
..+||++|-|.+..+++- .+. .+..+++-..|. + .++.|++ .|+.+++| |+++...-....-
T Consensus 231 ~~~iiIiG~G~~g~~l~~--~L~~~~~~v~vid~~~--~----------~~~~~~~~~~~~~~i~g-d~~~~~~L~~~~~ 295 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAK--LLEKEGYSVKLIERDP--E----------RAEELAEELPNTLVLHG-DGTDQELLEEEGI 295 (453)
T ss_pred CCEEEEECCCHHHHHHHH--HHHhCCCeEEEEECCH--H----------HHHHHHHHCCCCeEEEC-CCCCHHHHHhcCC
Confidence 578999999998776443 331 234555443332 1 2333443 36778887 9987654333344
Q ss_pred CcccEEEEcCCC
Q 014642 115 RKFDRIIFNFPH 126 (421)
Q Consensus 115 ~~FDrIIFNFPH 126 (421)
...|.||--.|.
T Consensus 296 ~~a~~vi~~~~~ 307 (453)
T PRK09496 296 DEADAFIALTND 307 (453)
T ss_pred ccCCEEEECCCC
Confidence 678888865553
No 267
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=31.94 E-value=1.1e+02 Score=26.21 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=38.0
Q ss_pred eEEEEecCChhHHHHHHHhh----CCCCcEEecccc---CHHHHHHhhhhHHHHHHHHHh-CCCEEEeec
Q 014642 40 QILLVGEGDFSFSFALSQKF----GSASNICASSLD---SYETVVKKFKEARSNLDTLKK-LGASIIHGV 101 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~----gs~~nLvATSlD---S~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgV 101 (421)
+||+++=| +|+.+++... |...++.|-++. +.+++.++ ..+-++.+.+ .|+.|+.++
T Consensus 2 ~ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~---i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 2 GIIIATHG--GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEK---IKAALAELDSGEGVLILTDL 66 (122)
T ss_pred eEEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH---HHHHHHHhCCCCcEEEEEeC
Confidence 58999999 8999987653 555577777764 45555544 3444666643 467777766
No 268
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.70 E-value=1.3e+02 Score=28.37 Aligned_cols=75 Identities=11% Similarity=0.238 Sum_probs=43.4
Q ss_pred CCCeEEEEec---CC--hhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccc
Q 014642 37 SKHQILLVGE---GD--FSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHS 110 (421)
Q Consensus 37 s~~rILLVGE---GD--FSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~ 110 (421)
+++.+|+.|= +. ...+++|++ .+.+|+.+...+. ..+.+++|.+ .|..+.+.+|+++..+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~---~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 72 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACRE---QGAELAFTYVVDK---------LEERVRKMAAELDSELVFRCDVASDDEIN 72 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHH---CCCEEEEEcCcHH---------HHHHHHHHHhccCCceEEECCCCCHHHHH
Confidence 4568999993 22 344444443 3567877654321 1123444443 244466889999876543
Q ss_pred cc------ccCcccEEEEc
Q 014642 111 EL------SKRKFDRIIFN 123 (421)
Q Consensus 111 ~L------k~~~FDrIIFN 123 (421)
.+ ...+.|.+|.|
T Consensus 73 ~~~~~~~~~~g~iD~lVnn 91 (261)
T PRK08690 73 QVFADLGKHWDGLDGLVHS 91 (261)
T ss_pred HHHHHHHHHhCCCcEEEEC
Confidence 32 12579999988
No 269
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=31.56 E-value=50 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCeEEEEecCChhHH--HHHHHhhCCCCcEEeccccCH
Q 014642 38 KHQILLVGEGDFSFS--FALSQKFGSASNICASSLDSY 73 (421)
Q Consensus 38 ~~rILLVGEGDFSFS--lSLa~~~gs~~nLvATSlDS~ 73 (421)
...|.++|||.|-++ ..|..+.....+|+--.+|+.
T Consensus 70 ~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~ 107 (178)
T cd02008 70 KKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNR 107 (178)
T ss_pred CCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCc
Confidence 456889999999875 455544333456766677753
No 270
>PRK07814 short chain dehydrogenase; Provisional
Probab=31.44 E-value=1.3e+02 Score=28.19 Aligned_cols=75 Identities=11% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCeEEEEecCC---hhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc-
Q 014642 38 KHQILLVGEGD---FSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGD---FSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L- 112 (421)
+++||+.|-+. .+.+..|+++ +.+|+.++.+.. .+ +...+.|+..|..+ ++.+|.++......+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~---G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA---GADVLIAARTES-QL-------DEVAEQIRAAGRRAHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 56899999776 3444444432 458888877532 11 12234455555444 467898886643211
Q ss_pred c-----cCcccEEEEc
Q 014642 113 S-----KRKFDRIIFN 123 (421)
Q Consensus 113 k-----~~~FDrIIFN 123 (421)
. ..+.|.||.|
T Consensus 79 ~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 79 GQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 1 1467876665
No 271
>PRK05875 short chain dehydrogenase; Provisional
Probab=31.43 E-value=3.6e+02 Score=25.24 Aligned_cols=78 Identities=10% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~L- 112 (421)
+++||+.|=+.+ ...+|++.+ ..+.+|++++.+.. .+. ...+.|... +-...+.+|.++......+
T Consensus 7 ~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~-~~~-------~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (276)
T PRK05875 7 DRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPD-KLA-------AAAEEIEALKGAGAVRYEPADVTDEDQVARAV 77 (276)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHH-HHH-------HHHHHHHhccCCCceEEEEcCCCCHHHHHHHH
Confidence 468999996443 455555544 13457888887632 221 122334433 2234556788776543222
Q ss_pred c-----cCcccEEEEcC
Q 014642 113 S-----KRKFDRIIFNF 124 (421)
Q Consensus 113 k-----~~~FDrIIFNF 124 (421)
. ..+.|.||.|-
T Consensus 78 ~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 78 DAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 1 24689998885
No 272
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=31.37 E-value=72 Score=26.23 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=45.9
Q ss_pred EEEEecCChhHHHHHHHhhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642 41 ILLVGEGDFSFSFALSQKFGS-ASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119 (421)
Q Consensus 41 ILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr 119 (421)
|+++|=|. ++..|++.+.. ...++.-..|. +.++.+++.|..+++ -|+++......+.-...|.
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~------------~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDP------------ERVEELREEGVEVIY-GDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSH------------HHHHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCc------------HHHHHHHhccccccc-ccchhhhHHhhcCccccCE
Confidence 68999995 66666665532 23566655552 236788888988887 5888876655555577888
Q ss_pred EEEcCC
Q 014642 120 IIFNFP 125 (421)
Q Consensus 120 IIFNFP 125 (421)
||--.+
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 887665
No 273
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=31.18 E-value=1.7e+02 Score=27.08 Aligned_cols=77 Identities=9% Similarity=0.140 Sum_probs=45.1
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. -.-.+|++.+ ..+.+|++++.+.. ..+..++|+..|..+ .+.+|.++......+
T Consensus 8 ~k~vlVtGas~-gIG~~la~~l~~~G~~v~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 8 GKVVVVTGAAQ-GIGRGVALRAAAEGARVVLVDRSEL---------VHEVAAELRAAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCchH---------HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 46789998544 3445555544 23567888776521 112345566666654 467888875432211
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
....+|.||.|=
T Consensus 78 ~~~~~~~id~lv~nA 92 (260)
T PRK12823 78 AVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHcCCCeEEEECC
Confidence 125689988874
No 274
>PLN02702 L-idonate 5-dehydrogenase
Probab=30.69 E-value=1.5e+02 Score=29.42 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=33.7
Q ss_pred cCCCCeEEEEecCChhH-HHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecc
Q 014642 35 YSSKHQILLVGEGDFSF-SFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVD 102 (421)
Q Consensus 35 Yss~~rILLVGEGDFSF-SlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVD 102 (421)
..++++||+.|.|...- +..+|++.|. .++++++-++ ...+.++++|+...+.++
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~------------~~~~~~~~~g~~~~~~~~ 234 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDD------------ERLSVAKQLGADEIVLVS 234 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCH------------HHHHHHHHhCCCEEEecC
Confidence 35678999999876553 3455677653 3466665321 234566777877665544
No 275
>PRK07831 short chain dehydrogenase; Provisional
Probab=30.68 E-value=1.6e+02 Score=27.49 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCC--EEEeecccCCcCccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGA--SIIHGVDATEMKEHSEL 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv--~VlhgVDATkL~~~~~L 112 (421)
.++++|++|=..+-...++++.+ ..+.+|+++..+. +.+ +...+.|++ .|. ...+.+|.++......+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE-RRL-------GETADELAAELGLGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHHhcCCceEEEEEccCCCHHHHHHH
Confidence 35789999974434455555443 1245688876542 222 222344544 342 34677898876543221
Q ss_pred ------ccCcccEEEEcCC
Q 014642 113 ------SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ------k~~~FDrIIFNFP 125 (421)
.....|.||.|--
T Consensus 88 ~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1246898888753
No 276
>PRK08251 short chain dehydrogenase; Provisional
Probab=30.62 E-value=4.2e+02 Score=24.21 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=41.6
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEE-EeecccCCcCccccc--
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASI-IHGVDATEMKEHSEL-- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~V-lhgVDATkL~~~~~L-- 112 (421)
.++|+.|= .=-...+|++.+ ..+.+|++++.+. +.+. +-...|+.. |..+ .+.+|.++......+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~-~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRT-DRLE-------ELKAELLARYPGIKVAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCH-HHHH-------HHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHH
Confidence 47888883 335555555554 2345788777653 2221 112233322 4444 457899887543221
Q ss_pred ----ccCcccEEEEcC
Q 014642 113 ----SKRKFDRIIFNF 124 (421)
Q Consensus 113 ----k~~~FDrIIFNF 124 (421)
...+.|.||.|-
T Consensus 74 ~~~~~~~~id~vi~~a 89 (248)
T PRK08251 74 EFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689988873
No 277
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.08 E-value=55 Score=25.68 Aligned_cols=66 Identities=15% Similarity=0.359 Sum_probs=39.6
Q ss_pred eEEEEecCChhHHHHHH-HhhCCCCcEEeccccCHHHHHHhhhh--HHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642 40 QILLVGEGDFSFSFALS-QKFGSASNICASSLDSYETVVKKFKE--ARSNLDTLKKLGASIIHGVDATEMKEH 109 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa-~~~gs~~nLvATSlDS~eeL~~KY~~--a~~Nl~~Lr~~Gv~VlhgVDATkL~~~ 109 (421)
+|++||=|.-+--.|-+ .+++....|+ +..+.+...++. ++...+.|++.|+.|+++...+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli----~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 69 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLI----ERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKD 69 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE----ESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEE----eccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe
Confidence 68999998765444432 3344333333 222222222222 233567899999999999999988754
No 278
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.99 E-value=67 Score=34.83 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=22.2
Q ss_pred ccCCCCeEEEEecCChhHHHH--HHHhhCCC
Q 014642 34 HYSSKHQILLVGEGDFSFSFA--LSQKFGSA 62 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSlS--La~~~gs~ 62 (421)
.|-.++|+.++||++...+++ |.+.+|-.
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~ELGm~ 331 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILAREMGIR 331 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHhCCCE
Confidence 355678999999999888876 55677644
No 279
>PRK06194 hypothetical protein; Provisional
Probab=29.94 E-value=1.4e+02 Score=28.26 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk-- 113 (421)
+++||+.|=+.|- ..+|++.+ ..+.+|+++..+. +. ...+.++|+..|..+ .+..|+++......+-
T Consensus 6 ~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQ-DA-------LDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCCh-HH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4679999976542 33344333 2356788876643 21 223455666666654 4788988765432221
Q ss_pred ----cCcccEEEEcCCC
Q 014642 114 ----KRKFDRIIFNFPH 126 (421)
Q Consensus 114 ----~~~FDrIIFNFPH 126 (421)
....|.||.|=-.
T Consensus 77 ~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1457887777433
No 280
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.79 E-value=2e+02 Score=26.67 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCeEEEEecCCh-hHHHHHHHhh-CCCCcEEeccccCHHHHHH----hhhhHHHHHHHHHhCCC-EEEeecccCCcCccc
Q 014642 38 KHQILLVGEGDF-SFSFALSQKF-GSASNICASSLDSYETVVK----KFKEARSNLDTLKKLGA-SIIHGVDATEMKEHS 110 (421)
Q Consensus 38 ~~rILLVGEGDF-SFSlSLa~~~-gs~~nLvATSlDS~eeL~~----KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~ 110 (421)
+++||+.|=+.| -...+|++.+ ..+.+|++.+....+.... + ++.....+.++..|. ...+.+|.++..+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHD-KEPVLLKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccch-hhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 457999997655 3455555444 1245788776541110000 0 011112344555554 356788888765421
Q ss_pred cc------ccCcccEEEEcC
Q 014642 111 EL------SKRKFDRIIFNF 124 (421)
Q Consensus 111 ~L------k~~~FDrIIFNF 124 (421)
.+ .....|.||.|-
T Consensus 84 ~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 84 RVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 11 125689887764
No 281
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=29.51 E-value=3.9e+02 Score=26.47 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=54.6
Q ss_pred CeEEEEecCChhHHH-HHHHhhC--CCCcEEeccccCH---HHH--------------HHhhhhHHHHHHHHHhCCCEEE
Q 014642 39 HQILLVGEGDFSFSF-ALSQKFG--SASNICASSLDSY---ETV--------------VKKFKEARSNLDTLKKLGASII 98 (421)
Q Consensus 39 ~rILLVGEGDFSFSl-SLa~~~g--s~~nLvATSlDS~---eeL--------------~~KY~~a~~Nl~~Lr~~Gv~Vl 98 (421)
+-+.+--|||..=|. .|++.+. -+.+.|||.+=-| +++ ...+|+-...++.|+.++++++
T Consensus 6 ~lMIvfe~GDlnsA~~~L~~sl~~Pf~~~~VatVlVqEsireefi~rvr~~m~pl~~~va~Hpny~rsl~~i~~l~~~~I 85 (215)
T PF07368_consen 6 QLMIVFEDGDLNSAMHYLLESLHNPFAPGAVATVLVQESIREEFIERVRSRMKPLSPQVANHPNYLRSLKKIKCLNAKTI 85 (215)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhCcccCCcEEEEEEeHHHHHHHHHHHHHhCccCChhhccCcHHHHHHHHHHhcCCeEE
Confidence 345566789986554 4555543 3568999988532 222 2357777888999999999999
Q ss_pred eecccCCcCcccccccCcccEEEEcCCCCCC
Q 014642 99 HGVDATEMKEHSELSKRKFDRIIFNFPHAGF 129 (421)
Q Consensus 99 hgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~ 129 (421)
.+-.-..+ ...-=.||++|||.=+
T Consensus 86 ~~~~~~~~-------~~aSPilV~d~~h~~f 109 (215)
T PF07368_consen 86 VADFENVP-------PPASPILVCDFTHSYF 109 (215)
T ss_pred EecccCCC-------CCCCCEEEcCCCHHHc
Confidence 98111111 1234578999999643
No 282
>PRK08643 acetoin reductase; Validated
Probab=29.45 E-value=1.8e+02 Score=26.91 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||++|=..+ -..+|++.+ ..+.+|+.++.+.. .+ .....++++.|.. +.+.+|.++......+
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEE-TA-------QAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 357888884433 445555544 23457888876532 11 1223345555544 4578899887642211
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
+....|.||.|=
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689999885
No 283
>PRK06483 dihydromonapterin reductase; Provisional
Probab=29.05 E-value=1.9e+02 Score=26.45 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=43.2
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc-----
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL----- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L----- 112 (421)
++||+.|=+. ....++++.+ ..+.+|+++..+..+. .+.++..|+. .+.+|.++......+
T Consensus 3 k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 3 APILITGAGQ-RIGLALAWHLLAQGQPVIVSYRTHYPA-----------IDGLRQAGAQ-CIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred ceEEEECCCC-hHHHHHHHHHHHCCCeEEEEeCCchhH-----------HHHHHHcCCE-EEEcCCCCHHHHHHHHHHHH
Confidence 5788888765 3445555444 2356888887654321 2344555764 467898876543221
Q ss_pred -ccCcccEEEEcC
Q 014642 113 -SKRKFDRIIFNF 124 (421)
Q Consensus 113 -k~~~FDrIIFNF 124 (421)
....+|.||.|=
T Consensus 70 ~~~~~id~lv~~a 82 (236)
T PRK06483 70 QHTDGLRAIIHNA 82 (236)
T ss_pred hhCCCccEEEECC
Confidence 124689988884
No 284
>PRK08589 short chain dehydrogenase; Validated
Probab=28.98 E-value=2e+02 Score=27.25 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=45.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|++|=+. -.-+++++.+. .+.+|+.++.+ +.+ ...+++|++.|.. ..+.+|.++......+
T Consensus 6 ~k~vlItGas~-gIG~aia~~l~~~G~~vi~~~r~--~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 6 NKVAVITGAST-GIGQASAIALAQEGAYVLAVDIA--EAV-------SETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCc--HHH-------HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 45788888654 33455554441 35678887665 222 2345566665543 4577888876543221
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.+|.|=
T Consensus 76 ~~~~~g~id~li~~A 90 (272)
T PRK08589 76 IKEQFGRVDVLFNNA 90 (272)
T ss_pred HHHHcCCcCEEEECC
Confidence 125689888884
No 285
>PRK06181 short chain dehydrogenase; Provisional
Probab=28.79 E-value=4.7e+02 Score=24.19 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=42.8
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc----
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L---- 112 (421)
.+||+.|=.. ....+|++.+ ..+.+|++++.+. +. .+...+.|+..|.. ..+.+|.++......+
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNE-TR-------LASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4688888533 3444454433 2345799887653 21 22234556666654 3567898886543221
Q ss_pred --ccCcccEEEEc
Q 014642 113 --SKRKFDRIIFN 123 (421)
Q Consensus 113 --k~~~FDrIIFN 123 (421)
.....|.||.|
T Consensus 73 ~~~~~~id~vi~~ 85 (263)
T PRK06181 73 VARFGGIDILVNN 85 (263)
T ss_pred HHHcCCCCEEEEC
Confidence 11467988877
No 286
>PRK09291 short chain dehydrogenase; Provisional
Probab=28.62 E-value=1.7e+02 Score=26.87 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=41.4
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcccccccCc
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~Lk~~~ 116 (421)
.+||+.|=+. -...++++.+ ..+.++++++.+... + ....+.++..|.. ...-.|.++...........
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQ-V-------TALRAEAARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 4788998755 3455555544 235689998876321 1 1112233334432 23346777754432222347
Q ss_pred ccEEEEc
Q 014642 117 FDRIIFN 123 (421)
Q Consensus 117 FDrIIFN 123 (421)
.|.||.|
T Consensus 74 id~vi~~ 80 (257)
T PRK09291 74 VDVLLNN 80 (257)
T ss_pred CCEEEEC
Confidence 8998887
No 287
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.29 E-value=3.4e+02 Score=25.39 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=52.0
Q ss_pred cCCCCeEEEEec-CChhHHHH-HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc-ccc
Q 014642 35 YSSKHQILLVGE-GDFSFSFA-LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE-HSE 111 (421)
Q Consensus 35 Yss~~rILLVGE-GDFSFSlS-La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~-~~~ 111 (421)
..++++||+.|- |....++. +|++.| .+|++|+-..+ ..+.|+++|+.-+.. +...+.. ...
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~------------~~~~~~~~g~~~~~~-~~~~~~~~i~~ 204 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPE------------RAALLKELGADEVVI-DDGAIAEQLRA 204 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHH------------HHHHHHhcCCcEEEe-cCccHHHHHHH
Confidence 456789999996 77766654 356665 45888765532 234555677643322 1111111 111
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
+ ++.+|.|+ ..+|. ..+..+.+.|+++|.+..
T Consensus 205 ~-~~~~d~vl---~~~~~------------------~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 205 A-PGGFDKVL---ELVGT------------------ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred h-CCCceEEE---ECCCh------------------HHHHHHHHHhccCCEEEE
Confidence 2 45688776 24542 123445567888898743
No 288
>PRK07063 short chain dehydrogenase; Provisional
Probab=28.25 E-value=1.8e+02 Score=27.06 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=43.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCE-EEeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKK--LGAS-IIHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--~Gv~-VlhgVDATkL~~~~~L- 112 (421)
+++||++|=+. .-.+++++.+ ..+.+|+.++.+. +.+ ++..++|+. .+.. ..+.+|.++......+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDA-ALA-------ERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 46789988553 3344444443 2356788887653 222 223445554 3443 4677888876543222
Q ss_pred -----ccCcccEEEEc
Q 014642 113 -----SKRKFDRIIFN 123 (421)
Q Consensus 113 -----k~~~FDrIIFN 123 (421)
....+|.+|.|
T Consensus 78 ~~~~~~~g~id~li~~ 93 (260)
T PRK07063 78 AAAEEAFGPLDVLVNN 93 (260)
T ss_pred HHHHHHhCCCcEEEEC
Confidence 12578999888
No 289
>PRK09242 tropinone reductase; Provisional
Probab=28.16 E-value=4.8e+02 Score=24.10 Aligned_cols=78 Identities=12% Similarity=0.203 Sum_probs=42.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCE-EEeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKL--GAS-IIHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~-VlhgVDATkL~~~~~L- 112 (421)
++++|++|=+. --..++++.+. .+.+|++++.+. +.+ +...+.|+.. +.. ..+.+|.++..+...+
T Consensus 9 ~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 9 GQTALITGASK-GIGLAIAREFLGLGADVLIVARDA-DAL-------AQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 56889998643 22333333331 246788888763 222 2233444443 433 4567888876543221
Q ss_pred -----ccCcccEEEEcC
Q 014642 113 -----SKRKFDRIIFNF 124 (421)
Q Consensus 113 -----k~~~FDrIIFNF 124 (421)
...++|.||.|-
T Consensus 80 ~~~~~~~g~id~li~~a 96 (257)
T PRK09242 80 DWVEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 125689888774
No 290
>PRK07904 short chain dehydrogenase; Provisional
Probab=27.87 E-value=2e+02 Score=27.09 Aligned_cols=84 Identities=20% Similarity=0.362 Sum_probs=50.0
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-E-EEeecccCCcCccccc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GS-ASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-S-IIHGVDATEMKEHSEL 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs-~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~-VlhgVDATkL~~~~~L 112 (421)
+..+||+.|=+. -..++||+.+ .. +.+|++++.+....+ +..+++|+..|. . ..+..|+++......+
T Consensus 7 ~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRR-------DAAVAQMKAAGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhH-------HHHHHHHHhcCCCceEEEEecCCChHHHHHH
Confidence 456899999765 4555566554 22 468999887643212 233555666553 3 3457888876542211
Q ss_pred -----ccCcccEEEEcCCCCC
Q 014642 113 -----SKRKFDRIIFNFPHAG 128 (421)
Q Consensus 113 -----k~~~FDrIIFNFPH~G 128 (421)
.....|.+|.|....+
T Consensus 79 ~~~~~~~g~id~li~~ag~~~ 99 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGLLG 99 (253)
T ss_pred HHHHHhcCCCCEEEEeeecCC
Confidence 1257999999875544
No 291
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.68 E-value=1.4e+02 Score=29.04 Aligned_cols=97 Identities=26% Similarity=0.396 Sum_probs=50.9
Q ss_pred cCCCCeEEEEecCChh-HHHHHHHhhCCCCc-EEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc---Cc-
Q 014642 35 YSSKHQILLVGEGDFS-FSFALSQKFGSASN-ICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM---KE- 108 (421)
Q Consensus 35 Yss~~rILLVGEGDFS-FSlSLa~~~gs~~n-LvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL---~~- 108 (421)
..++++||+.|.|... ++..||++.| .+ +++|+-++ ++.+.++++|+.-++..+-+.. .+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~------------~~~~~~~~~g~~~vi~~~~~~~~~~~~~ 225 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDP------------SRLEFAKELGATHTVNVRTEDTPESAEK 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCH------------HHHHHHHHcCCcEEeccccccchhHHHH
Confidence 4567899998766432 2334567665 34 66664432 1234555567765544433221 11
Q ss_pred -ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 109 -HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 109 -~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
...+.+..+|.|+-. +|. ...+..+...|+++|.+..
T Consensus 226 ~~~~~~~~~~d~vld~---~g~-----------------~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 226 IAELLGGKGPDVVIEC---TGA-----------------ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred HHHHhCCCCCCEEEEC---CCC-----------------HHHHHHHHHHhhcCCEEEE
Confidence 011234568876542 442 0134455668888898653
No 292
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=27.63 E-value=1.7e+02 Score=29.97 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=45.6
Q ss_pred cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEecCCCCcCccc----HHHHHHhCC
Q 014642 112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHKTTAPFCKWH----IEELARKHS 186 (421)
Q Consensus 112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~g~PY~sWn----I~~LAa~aG 186 (421)
+....||.||-+=|-....| + + --..|++--..+|+++|+ +|-+=..|+-|.--| |.+.-++.|
T Consensus 201 ~~D~sfDaIiHDPPRfS~Ag-e-----L-----YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vG 269 (287)
T COG2521 201 FDDESFDAIIHDPPRFSLAG-E-----L-----YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVG 269 (287)
T ss_pred CCccccceEeeCCCccchhh-h-----H-----hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcC
Confidence 34688999999988776433 1 1 123566666679999998 565555554454444 444556789
Q ss_pred cEEEEEe
Q 014642 187 LLRLDCV 193 (421)
Q Consensus 187 L~L~~~~ 193 (421)
|..++++
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 8876654
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=27.33 E-value=2.4e+02 Score=25.20 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC-cEEEEEeeCCCC
Q 014642 138 VIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS-LLRLDCVQFRKE 198 (421)
Q Consensus 138 ~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG-L~L~~~~~F~~~ 198 (421)
....-.+.+..++..+..+|+++|.+.|-+.+.. ...|-+..+....| +.+.........
T Consensus 27 ~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 27 NHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE-IAGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE-ECTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh-hhHHHHHHHHHHhhhhheeccceeEec
Confidence 4555667788999999999999999999887643 22222334445557 888887776655
No 294
>PRK09135 pteridine reductase; Provisional
Probab=27.26 E-value=4.7e+02 Score=23.65 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeecccCCcCccccc-c
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHGVDATEMKEHSEL-S 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~VlhgVDATkL~~~~~L-k 113 (421)
..+||+.| |+-....+|++.+- .+.+|++.+..+.+.+.. ....|++. +....+-+|.++......+ +
T Consensus 6 ~~~vlItG-a~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 6 AKVALITG-GARRIGAAIARTLHAAGYRVAIHYHRSAAEADA-------LAAELNALRPGSAAALQADLLDPDALPELVA 77 (249)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHH-------HHHHHHhhcCCceEEEEcCCCCHHHHHHHHH
Confidence 35799999 44455566665542 356787776654332211 11233332 2345667898886643221 1
Q ss_pred -----cCcccEEEEc
Q 014642 114 -----KRKFDRIIFN 123 (421)
Q Consensus 114 -----~~~FDrIIFN 123 (421)
....|.||.|
T Consensus 78 ~~~~~~~~~d~vi~~ 92 (249)
T PRK09135 78 ACVAAFGRLDALVNN 92 (249)
T ss_pred HHHHHcCCCCEEEEC
Confidence 1356876666
No 295
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=27.16 E-value=1.1e+02 Score=28.18 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHhCC----CEEEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe
Q 014642 87 LDTLKKLG----ASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE 162 (421)
Q Consensus 87 l~~Lr~~G----v~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge 162 (421)
-+.|++.| +++++.=- .+|.+. +.....|.||||+=-..+..+ .|.-..+=-..=.+.|.++|+++|.
T Consensus 16 ~~rL~~~~~~~~v~li~~sH-e~l~~~--i~~~~v~~~iFNLGYLPggDk-----~i~T~~~TTl~Al~~al~lL~~gG~ 87 (140)
T PF06962_consen 16 RERLEEAGLEDRVTLILDSH-ENLDEY--IPEGPVDAAIFNLGYLPGGDK-----SITTKPETTLKALEAALELLKPGGI 87 (140)
T ss_dssp HHHHHHTT-GSGEEEEES-G-GGGGGT----S--EEEEEEEESB-CTS-T-----TSB--HHHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHhcCCCCcEEEEECCH-HHHHhh--CccCCcCEEEEECCcCCCCCC-----CCCcCcHHHHHHHHHHHHhhccCCE
Confidence 44566654 44444322 234333 223589999999855543222 2333333344557788899999999
Q ss_pred EEEEecCCCC
Q 014642 163 VHVSHKTTAP 172 (421)
Q Consensus 163 IHVTLk~g~P 172 (421)
|.|.+=.|-|
T Consensus 88 i~iv~Y~GH~ 97 (140)
T PF06962_consen 88 ITIVVYPGHP 97 (140)
T ss_dssp EEEEE--STC
T ss_pred EEEEEeCCCC
Confidence 9999988876
No 296
>PRK12828 short chain dehydrogenase; Provisional
Probab=27.14 E-value=1.6e+02 Score=26.40 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=45.4
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+.+||+.|=.. .-..+|++.+ ..+..|++++.+... + .+.++.|+..++.+. ..|.++..+-..+
T Consensus 7 ~k~vlItGatg-~iG~~la~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~ 76 (239)
T PRK12828 7 GKVVAITGGFG-GLGRATAAWLAARGARVALIGRGAAP-L-------SQTLPGVPADALRIG-GIDLVDPQAARRAVDEV 76 (239)
T ss_pred CCEEEEECCCC-cHhHHHHHHHHHCCCeEEEEeCChHh-H-------HHHHHHHhhcCceEE-EeecCCHHHHHHHHHHH
Confidence 46899998655 3345555544 124578888876421 1 123445555666554 5888776543221
Q ss_pred --ccCcccEEEEcCCC
Q 014642 113 --SKRKFDRIIFNFPH 126 (421)
Q Consensus 113 --k~~~FDrIIFNFPH 126 (421)
.....|.||+|=..
T Consensus 77 ~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 77 NRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHhCCcCEEEECCcc
Confidence 12467999987543
No 297
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.14 E-value=1.8e+02 Score=27.00 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=43.3
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc----
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L---- 112 (421)
+++|+.|=+.. -..++++.+ ..+.+|++++.+. +.+ ....+.++..+. ...+.+|.++......+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTK-EKL-------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 57888888764 333444333 1245888887763 222 122334444443 34678898875543221
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
.....|.||.|=
T Consensus 73 ~~~~~~id~lI~~a 86 (252)
T PRK07677 73 DEKFGRIDALINNA 86 (252)
T ss_pred HHHhCCccEEEECC
Confidence 124689999984
No 298
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=26.99 E-value=58 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhCCCCcEEe
Q 014642 38 KHQILLVGEGDFSFSFALSQKFGSASNICA 67 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvA 67 (421)
+.=||+-||+||.=.+.-++..|..+.|++
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 456888999999999999998876556666
No 299
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.71 E-value=2e+02 Score=26.31 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
+++||++|-.. ....+|++.+ ..+..|+.++.... .+ ....+++++.+..+ .+.+|.++......+
T Consensus 4 ~~~vlItG~sg-~iG~~la~~l~~~g~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 4 GKVALVTGAAS-GIGLEIALALAKEGAKVVIADLNDE-AA-------AAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46899998543 2344555443 13456777766532 11 12334555566553 466888876643221
Q ss_pred ---ccCcccEEEEcCC
Q 014642 113 ---SKRKFDRIIFNFP 125 (421)
Q Consensus 113 ---k~~~FDrIIFNFP 125 (421)
.....|.||.|=-
T Consensus 75 ~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998854
No 300
>PRK07074 short chain dehydrogenase; Provisional
Probab=26.51 E-value=1.5e+02 Score=27.36 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc-cc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE-LS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~-Lk-- 113 (421)
+++||++|=+.+ -..+|++.+. .+.+|++++.+.. .+ +...+.+.. +-...+.+|+++...-.. +.
T Consensus 2 ~k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~-~~-------~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 2 KRTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAA-AL-------AAFADALGD-ARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CCEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHhcC-CceEEEEecCCCHHHHHHHHHHH
Confidence 357899987553 3444444431 2457888876532 11 122333422 223467899988765321 11
Q ss_pred ---cCcccEEEEcC
Q 014642 114 ---KRKFDRIIFNF 124 (421)
Q Consensus 114 ---~~~FDrIIFNF 124 (421)
...+|.||+|=
T Consensus 72 ~~~~~~~d~vi~~a 85 (257)
T PRK07074 72 AAERGPVDVLVANA 85 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 14589888874
No 301
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=26.37 E-value=5.4e+02 Score=24.05 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+. .-..++++.+ ..+.+|+.+..+. +.+ .+-++.+++.|.. +.+.+|.++..+...+
T Consensus 10 ~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQ-ELV-------DKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCH-HHH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788888766 3344555443 1245676664432 222 2234456666654 4678999887653222
Q ss_pred ---ccCcccEEEEcCCCCC
Q 014642 113 ---SKRKFDRIIFNFPHAG 128 (421)
Q Consensus 113 ---k~~~FDrIIFNFPH~G 128 (421)
...++|.||.|---.+
T Consensus 81 ~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHhCCCCCEEEECCCCCC
Confidence 1256899999965433
No 302
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.37 E-value=2.2e+02 Score=26.02 Aligned_cols=78 Identities=13% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCc-c-cc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKE-H-SE- 111 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~-~-~~- 111 (421)
+++||++| |+=....+|++.+. .+.+|++++... +. .....++|.+.+ ....+.+|.++... . ..
T Consensus 6 ~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 6 DKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQ-KK-------LEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCh-HH-------HHHHHHHHHHcCCCCcceEEeeecccchHHHHHH
Confidence 46899999 55566667776652 356788887653 22 222345555443 12345677654321 1 00
Q ss_pred ---cc--c-CcccEEEEcC
Q 014642 112 ---LS--K-RKFDRIIFNF 124 (421)
Q Consensus 112 ---Lk--~-~~FDrIIFNF 124 (421)
+. . ...|.||.|=
T Consensus 77 ~~~i~~~~~~~id~vi~~a 95 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCA 95 (239)
T ss_pred HHHHHHHhCCCCCEEEEec
Confidence 11 1 4679888874
No 303
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=26.26 E-value=1.5e+02 Score=29.54 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEecCChhH-HHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE
Q 014642 34 HYSSKHQILLVGEGDFSF-SFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI 97 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSF-SlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V 97 (421)
....+++||+.|.|-.-- +..||+++| ...|++|+-++ +.++.++++|+.-
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~------------~~~~~~~~~ga~~ 232 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINE------------DKFEKAKEFGATD 232 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCH------------HHHHHHHHcCCCc
Confidence 345678999999875543 344577775 33688775532 2345566778743
No 304
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=25.83 E-value=2e+02 Score=31.07 Aligned_cols=81 Identities=15% Similarity=0.379 Sum_probs=42.9
Q ss_pred cCCCCeEEEEecCC--hhHHHHHHHhhCCCCcEEeccccCHHHHH-------H--hhh--hHHHHHHHHHhCCCEEEeec
Q 014642 35 YSSKHQILLVGEGD--FSFSFALSQKFGSASNICASSLDSYETVV-------K--KFK--EARSNLDTLKKLGASIIHGV 101 (421)
Q Consensus 35 Yss~~rILLVGEGD--FSFSlSLa~~~gs~~nLvATSlDS~eeL~-------~--KY~--~a~~Nl~~Lr~~Gv~VlhgV 101 (421)
-..+++|++||-|= ++.+..|++ .| .+|+. +|..+.+- . +.+ -...-++.++++|+.+.++.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-~G--~~V~v--~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-MG--HAVTI--FEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-CC--CeEEE--EecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34678999999994 444444443 33 35555 33211110 0 001 12334677889999988875
Q ss_pred cc-CCcCcccccccCcccEEEE
Q 014642 102 DA-TEMKEHSELSKRKFDRIIF 122 (421)
Q Consensus 102 DA-TkL~~~~~Lk~~~FDrIIF 122 (421)
.. .++... .+ ...||.||.
T Consensus 209 ~~~~~~~~~-~~-~~~~D~Vi~ 228 (564)
T PRK12771 209 RVGEDITLE-QL-EGEFDAVFV 228 (564)
T ss_pred EECCcCCHH-HH-HhhCCEEEE
Confidence 54 332211 11 234887775
No 305
>PRK06198 short chain dehydrogenase; Provisional
Probab=25.83 E-value=1.9e+02 Score=26.66 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=44.5
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCc-EEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASN-ICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~n-LvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L-- 112 (421)
+.+||++|=+.+ -..+|++.+. .+.. |++++.+.. .+ ...++.|+..|..+ .+.+|.++......+
T Consensus 6 ~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 6 GKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAE-KG-------EAQAAELEALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHH-HH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 467999996543 4455554441 2345 888877532 11 23455666667654 567899886543221
Q ss_pred ----ccCcccEEEEc
Q 014642 113 ----SKRKFDRIIFN 123 (421)
Q Consensus 113 ----k~~~FDrIIFN 123 (421)
+....|.||.|
T Consensus 77 ~~~~~~g~id~li~~ 91 (260)
T PRK06198 77 AADEAFGRLDALVNA 91 (260)
T ss_pred HHHHHhCCCCEEEEC
Confidence 11468888766
No 306
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=25.63 E-value=51 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=29.5
Q ss_pred cHHHHHHhHHH--HHHHHHhhHhccCCCCeEEEEecCC
Q 014642 135 DDEVIRMHMSL--VEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 135 ~~~~I~~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
|--.|.-|++| |..++.+|..+|+++|++.|--+-+
T Consensus 210 QAiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 210 QAIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred hhheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 33456679998 9999999999999999988776554
No 307
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=25.61 E-value=3.3e+02 Score=27.11 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred CeEEEEecCChhHHHHHHHh-hCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecc-cCCcCcccccccCc
Q 014642 39 HQILLVGEGDFSFSFALSQK-FGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVD-ATEMKEHSELSKRK 116 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~-~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVD-ATkL~~~~~Lk~~~ 116 (421)
.+||=+|=||=++=.-|++. |. ..|+.+-|-....-+ +.||.+-+..--.|-|.++ .++- ....++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~--~~L~GvDYs~~AV~L------A~niAe~~~~~n~I~f~q~DI~~~----~~~~~q 136 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ--SKLTGVDYSEKAVEL------AQNIAERDGFSNEIRFQQLDITDP----DFLSGQ 136 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC--CCccccccCHHHHHH------HHHHHHhcCCCcceeEEEeeccCC----cccccc
Confidence 39999999999999999865 43 337777664332222 4577766655544666653 3332 122355
Q ss_pred ccEEEEcCCCCCCCCCccc--HHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh---CCcEEEE
Q 014642 117 FDRIIFNFPHAGFHGKEED--DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK---HSLLRLD 191 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~--~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~---aGL~L~~ 191 (421)
||.|.= +|.=|- ...-..+.+| .-|.-+...+|+|+|-..||.|+ |-..+|.++ .||.+..
T Consensus 137 fdlvlD-------KGT~DAisLs~d~~~~r~-~~Y~d~v~~ll~~~gifvItSCN------~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 137 FDLVLD-------KGTLDAISLSPDGPVGRL-VVYLDSVEKLLSPGGIFVITSCN------FTKDELVEEFENFNFEYLS 202 (227)
T ss_pred eeEEee-------cCceeeeecCCCCcccce-eeehhhHhhccCCCcEEEEEecC------ccHHHHHHHHhcCCeEEEE
Confidence 665531 111110 0000011111 46778889999999999999875 655565554 4566655
Q ss_pred Eee
Q 014642 192 CVQ 194 (421)
Q Consensus 192 ~~~ 194 (421)
.+|
T Consensus 203 tvp 205 (227)
T KOG1271|consen 203 TVP 205 (227)
T ss_pred eec
Confidence 543
No 308
>PRK06196 oxidoreductase; Provisional
Probab=25.52 E-value=1.4e+02 Score=29.12 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=44.4
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc----
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L---- 112 (421)
+++||+.|=+. --..++++.+. .+.+|++++.+.. .+ ++.+++|++ + ..+.+|.++......+
T Consensus 26 ~k~vlITGasg-gIG~~~a~~L~~~G~~Vv~~~R~~~-~~-------~~~~~~l~~--v-~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYS-GLGLETTRALAQAGAHVIVPARRPD-VA-------REALAGIDG--V-EVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHhhh--C-eEEEccCCCHHHHHHHHHHH
Confidence 46899999654 35556665542 3567888877532 11 122233332 3 3567898887653222
Q ss_pred --ccCcccEEEEcCC
Q 014642 113 --SKRKFDRIIFNFP 125 (421)
Q Consensus 113 --k~~~FDrIIFNFP 125 (421)
...+.|.||.|=.
T Consensus 94 ~~~~~~iD~li~nAg 108 (315)
T PRK06196 94 LDSGRRIDILINNAG 108 (315)
T ss_pred HhcCCCCCEEEECCC
Confidence 1257899998864
No 309
>PRK06139 short chain dehydrogenase; Provisional
Probab=25.51 E-value=1.6e+02 Score=29.63 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=45.6
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk-- 113 (421)
+++||+.|=+. -..+++++.+ ..+.+|+.++.+. +.+ ++-.+++++.|+.+ ...+|.++..+...+-
T Consensus 7 ~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~-~~l-------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 7 GAVVVITGASS-GIGQATAEAFARRGARLVLAARDE-EAL-------QAVAEECRALGAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 46889888753 3344444433 1356788887652 222 22345666777765 4567888765433221
Q ss_pred ----cCcccEEEEcC
Q 014642 114 ----KRKFDRIIFNF 124 (421)
Q Consensus 114 ----~~~FDrIIFNF 124 (421)
...+|.||.|=
T Consensus 78 ~~~~~g~iD~lVnnA 92 (330)
T PRK06139 78 AASFGGRIDVWVNNV 92 (330)
T ss_pred HHHhcCCCCEEEECC
Confidence 25789988873
No 310
>PRK07775 short chain dehydrogenase; Provisional
Probab=25.35 E-value=2.1e+02 Score=27.16 Aligned_cols=77 Identities=10% Similarity=0.175 Sum_probs=43.2
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk-- 113 (421)
...+|++|=+ =....+|++.+ ..+.+|++++... +.+ .+..+.++..|..+ .+-+|.++......+-
T Consensus 10 ~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGAS-SGIGAATAIELAAAGFPVALGARRV-EKC-------EELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4578999944 35566676655 2355787776542 211 12234455556544 4567888776532211
Q ss_pred ----cCcccEEEEc
Q 014642 114 ----KRKFDRIIFN 123 (421)
Q Consensus 114 ----~~~FDrIIFN 123 (421)
....|.||.|
T Consensus 81 ~~~~~~~id~vi~~ 94 (274)
T PRK07775 81 AEEALGEIEVLVSG 94 (274)
T ss_pred HHHhcCCCCEEEEC
Confidence 2457877755
No 311
>PRK12746 short chain dehydrogenase; Provisional
Probab=25.32 E-value=5.3e+02 Score=23.64 Aligned_cols=63 Identities=8% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEec-cccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcc
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICAS-SLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEH 109 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvAT-SlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~ 109 (421)
+.+||+.|=..+ ...+|++.+. .+..+++. ..+ .+.+ ...++.++..|.. ..+.+|.++....
T Consensus 6 ~~~ilItGasg~-iG~~la~~l~~~G~~v~i~~~r~-~~~~-------~~~~~~~~~~~~~~~~~~~D~~d~~~i 71 (254)
T PRK12746 6 GKVALVTGASRG-IGRAIAMRLANDGALVAIHYGRN-KQAA-------DETIREIESNGGKAFLIEADLNSIDGV 71 (254)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCC-HHHH-------HHHHHHHHhcCCcEEEEEcCcCCHHHH
Confidence 368999995433 3445554431 24455553 333 2222 2234555555543 3577899887643
No 312
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=25.23 E-value=3.2e+02 Score=26.40 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred CCeEEEE--ecCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc--ccc
Q 014642 38 KHQILLV--GEGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH--SEL 112 (421)
Q Consensus 38 ~~rILLV--GEGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~--~~L 112 (421)
..++|++ |.|... ++..||++.| .++++|+-.. +..+.++++|+...+..+...+.+. ...
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~ 208 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRK------------EQVDLLKKIGAEYVLNSSDPDFLEDLKELI 208 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCH------------HHHHHHHHcCCcEEEECCCccHHHHHHHHh
Confidence 4567775 777766 3445677775 4688875432 1345666788865554333222111 011
Q ss_pred ccCcccEEEEcCCCCC
Q 014642 113 SKRKFDRIIFNFPHAG 128 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G 128 (421)
..+.+|.|+ + .+|
T Consensus 209 ~~~~~d~vi-d--~~g 221 (324)
T cd08291 209 AKLNATIFF-D--AVG 221 (324)
T ss_pred CCCCCcEEE-E--CCC
Confidence 234688765 4 455
No 313
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=25.20 E-value=5.2e+02 Score=26.43 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...++|=+|=||=-=++.|+..+. .|.||..- ..-...|++.|-+|+-..| ..+ ...+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S------------~~Mr~rL~~kg~~vl~~~~---w~~----~~~~ 151 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEAS------------PPMRWRLSKKGFTVLDIDD---WQQ----TDFK 151 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCC------------HHHHHHHHhCCCeEEehhh---hhc----cCCc
Confidence 456899999999999999998874 58888543 1235579999999885555 322 2367
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK 168 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk 168 (421)
||.|..--=.-- -+ .=. ..++..+..|+|+|.+.|++.
T Consensus 152 fDvIscLNvLDR----c~------~P~----~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 152 FDVISCLNVLDR----CD------RPL----TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred eEEEeehhhhhc----cC------CHH----HHHHHHHHHhCCCCEEEEEEE
Confidence 999864221111 00 012 344556778999999999984
No 314
>PRK05866 short chain dehydrogenase; Provisional
Probab=25.00 E-value=1.9e+02 Score=28.06 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+.+||++|=+.+ -.++|++.+ ..+.+|++++.+. +.+ ++..++|++.|+. ..+.+|+++......+
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~-~~l-------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFARRGATVVAVARRE-DLL-------DAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 468999997543 234444333 2356899888762 222 2234455555544 4567888876543222
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
.....|.||.|
T Consensus 111 ~~~~~g~id~li~~ 124 (293)
T PRK05866 111 VEKRIGGVDILINN 124 (293)
T ss_pred HHHHcCCCCEEEEC
Confidence 12478998887
No 315
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=24.98 E-value=1.8e+02 Score=28.41 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCCCeEEEEecCChhHHH-HHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc-c-c
Q 014642 36 SSKHQILLVGEGDFSFSF-ALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS-E-L 112 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~-~-L 112 (421)
.++++||+.|.|-...++ .||++.| ...|++|+-++ .+.+.++++|+..+...+...+.+.. . .
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~------------~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~ 226 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNE------------YRLELAKKMGATYVVNPFKEDVVKEVADLT 226 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCH------------HHHHHHHHhCCcEEEcccccCHHHHHHHhc
Confidence 467899998877665553 3567765 22477773321 23445566787544433332221110 1 1
Q ss_pred ccCcccEEEE
Q 014642 113 SKRKFDRIIF 122 (421)
Q Consensus 113 k~~~FDrIIF 122 (421)
..+.||.|+-
T Consensus 227 ~~~~~d~vld 236 (340)
T TIGR00692 227 DGEGVDVFLE 236 (340)
T ss_pred CCCCCCEEEE
Confidence 2356877754
No 316
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.86 E-value=2.2e+02 Score=26.80 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=45.0
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||+.|=+. .-.+++++.+ ..+.+|+.++.+. +. .+...++|+..|.. ..+.+|.++......+
T Consensus 10 ~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 10 GKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQ-EK-------AEAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46788888644 2345555444 2356788887653 21 22334556666654 3568888877643222
Q ss_pred ---ccCcccEEEEc
Q 014642 113 ---SKRKFDRIIFN 123 (421)
Q Consensus 113 ---k~~~FDrIIFN 123 (421)
...+.|.||.|
T Consensus 81 ~~~~~g~id~li~~ 94 (278)
T PRK08277 81 ILEDFGPCDILING 94 (278)
T ss_pred HHHHcCCCCEEEEC
Confidence 12578998887
No 317
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=24.80 E-value=2.5e+02 Score=26.92 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=57.7
Q ss_pred cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccc
Q 014642 35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELS 113 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk 113 (421)
+-+.-++|-+|.|.=-=|+-||+. + .-.|+.|..+...++ +..+. +.++.|-.. ..+|.+. .+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~---G--~~VtAvD~s~~al~~-------l~~~a~~~~l~i~~~--~~Dl~~~-~~- 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ---G--FDVTAVDISPVALEK-------LQRLAEEEGLDIRTR--VADLNDF-DF- 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT---T---EEEEEESSHHHHHH-------HHHHHHHTT-TEEEE--E-BGCCB-S--
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC---C--CeEEEEECCHHHHHH-------HHHHHhhcCceeEEE--Eecchhc-cc-
Confidence 334569999999999999999876 3 345666744333332 33332 345543211 2233322 23
Q ss_pred cCcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE-Ee
Q 014642 114 KRKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV-SH 167 (421)
Q Consensus 114 ~~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV-TL 167 (421)
...||.|+.- |.|+ +++++...+++-..-++|||-+.+ +.
T Consensus 92 ~~~yD~I~st~v~~fL--------------~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMFL--------------QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TTTEEEEEEESSGGGS---------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCcCEEEEEEEeccC--------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 2579998742 2222 334456778888889999998555 44
No 318
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.76 E-value=4.5e+02 Score=24.21 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=46.3
Q ss_pred EEEEe-cCChhHH--HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cccccCc
Q 014642 41 ILLVG-EGDFSFS--FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SELSKRK 116 (421)
Q Consensus 41 ILLVG-EGDFSFS--lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~Lk~~~ 116 (421)
||++| -|++--+ .+|.+ .+..|+|-+.+.. ..-.+.|+..|+.|. .+|..+...- ..| +.
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~----------~~~~~~l~~~g~~vv-~~d~~~~~~l~~al--~g 64 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPS----------SDRAQQLQALGAEVV-EADYDDPESLVAAL--KG 64 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSH----------HHHHHHHHHTTTEEE-ES-TT-HHHHHHHH--TT
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccc----------hhhhhhhhcccceEe-ecccCCHHHHHHHH--cC
Confidence 67777 4665333 23333 4567999999872 233667888999987 8887765431 122 56
Q ss_pred ccEEEEcCCCCC
Q 014642 117 FDRIIFNFPHAG 128 (421)
Q Consensus 117 FDrIIFNFPH~G 128 (421)
.|+|++.=|...
T Consensus 65 ~d~v~~~~~~~~ 76 (233)
T PF05368_consen 65 VDAVFSVTPPSH 76 (233)
T ss_dssp CSEEEEESSCSC
T ss_pred CceEEeecCcch
Confidence 899999988664
No 319
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=24.65 E-value=3.8e+02 Score=26.00 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR 115 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~ 115 (421)
.++++||=||=|.=.++..|++.. ..++|--.|. .+.+ .+.+++.. ..++.++ .-|+.++.. .
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~--~~~~---~l~~~~~~--~~~v~ii-~~D~~~~~~------~ 90 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDP--RLAE---FLRDDEIA--AGNVEII-EGDALKVDL------P 90 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCH--HHHH---HHHHHhcc--CCCEEEE-EeccccCCc------h
Confidence 356899999999999999999872 3677766663 2322 24444433 1235544 447766531 2
Q ss_pred cccEEEEcCCCCC
Q 014642 116 KFDRIIFNFPHAG 128 (421)
Q Consensus 116 ~FDrIIFNFPH~G 128 (421)
.||.||-|-|.--
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 4799999999753
No 320
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=24.41 E-value=1.6e+02 Score=29.39 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=53.5
Q ss_pred cCCCCeEEEEecCChh-HHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc-cccc
Q 014642 35 YSSKHQILLVGEGDFS-FSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE-HSEL 112 (421)
Q Consensus 35 Yss~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~-~~~L 112 (421)
..++++||+.|-|-.- ++..||++.| ...|++|..+. +.++.++++|+......+..++.+ -..+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~------------~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~ 255 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNE------------DKLALARELGATATVNAGDPNAVEQVREL 255 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCH------------HHHHHHHHcCCceEeCCCchhHHHHHHHH
Confidence 4567899999987654 3344567665 33688875432 124566778875443332222111 1111
Q ss_pred ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642 113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV 165 (421)
Q Consensus 113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV 165 (421)
....+|.|| + .+|. . .-+..+.++|+++|.|.+
T Consensus 256 ~~~g~d~vi-d--~~G~-~----------------~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 256 TGGGVDYAF-E--MAGS-V----------------PALETAYEITRRGGTTVT 288 (371)
T ss_pred hCCCCCEEE-E--CCCC-h----------------HHHHHHHHHHhcCCEEEE
Confidence 223578664 4 2442 0 224456678899998764
No 321
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=24.39 E-value=64 Score=30.00 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred CeEEEEecCChhHHH-HHHHhhCCCCcEEeccccC
Q 014642 39 HQILLVGEGDFSFSF-ALSQKFGSASNICASSLDS 72 (421)
Q Consensus 39 ~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS 72 (421)
..|+++|||.|-++. .|+++.....+|+--.++.
T Consensus 77 ~vv~i~GDG~f~m~~~eL~Ta~~~~lpviivV~NN 111 (202)
T cd02006 77 QVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNN 111 (202)
T ss_pred eEEEEEeChHhhccHHHHHHHHHhCCCeEEEEEeC
Confidence 468999999999995 3443332245677777775
No 322
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.22 E-value=2.6e+02 Score=25.95 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=43.7
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
+++||++|=+. ....++++.+ ..+.+++.++.+.. +. ...+.+.+.|.. ..+.+|.++......+
T Consensus 15 ~k~vlItGas~-gIG~~ia~~l~~~G~~v~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 84 (258)
T PRK06935 15 GKVAIVTGGNT-GLGQGYAVALAKAGADIIITTHGTN--WD-------ETRRLIEKEGRKVTFVQVDLTKPESAEKVVKE 84 (258)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCcH--HH-------HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46899998765 4556666554 23556777666521 11 112233444433 4577899886653222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
.....|.||.|=
T Consensus 85 ~~~~~g~id~li~~a 99 (258)
T PRK06935 85 ALEEFGKIDILVNNA 99 (258)
T ss_pred HHHHcCCCCEEEECC
Confidence 124689988874
No 323
>PRK08862 short chain dehydrogenase; Provisional
Probab=24.08 E-value=6e+02 Score=23.75 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L--- 112 (421)
++.+|+.|=+. -..+++++.+ ..+.+|+.++.+. +.+ ++.++++++.|.. +.+.+|.++..+...+
T Consensus 5 ~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~-~~l-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 5 SSIILITSAGS-VLGRTISCHFARLGATLILCDQDQ-SAL-------KDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCH-HHH-------HHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 46889998776 5666666655 2456888877653 322 2234455555654 4566788876654322
Q ss_pred ---ccC-cccEEEEcC
Q 014642 113 ---SKR-KFDRIIFNF 124 (421)
Q Consensus 113 ---k~~-~FDrIIFNF 124 (421)
... +.|.+|-|-
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 113 789887774
No 324
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=23.84 E-value=1.8e+02 Score=27.91 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=37.3
Q ss_pred ccCCCCeEEEEecCChhHH-HHHHHhhCCCCc-EEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642 34 HYSSKHQILLVGEGDFSFS-FALSQKFGSASN-ICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFS-lSLa~~~gs~~n-LvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~ 111 (421)
...++++||+.|.|...-+ ..||++.| .+ +++|+-++ +..+.|++.|+..+..-+-........
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~ 221 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNE------------EKLELAKKLGATETVDPSREDPEAQKE 221 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCH------------HHHHHHHHhCCeEEecCCCCCHHHHHH
Confidence 4456789999996643333 33466665 34 66664432 124455666765332222111111111
Q ss_pred cccCcccEEE
Q 014642 112 LSKRKFDRII 121 (421)
Q Consensus 112 Lk~~~FDrII 121 (421)
+..+.+|.|+
T Consensus 222 ~~~~~vd~v~ 231 (334)
T cd08234 222 DNPYGFDVVI 231 (334)
T ss_pred hcCCCCcEEE
Confidence 2345688886
No 325
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=23.64 E-value=2.5e+02 Score=25.95 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=41.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-C--CEEEeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKL-G--ASIIHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-G--v~VlhgVDATkL~~~~~L- 112 (421)
+++||++|=+. .-..+|++.+. .+.+|+.+..+. +. .....+.|+.. | -...+.+|.++-..-..+
T Consensus 2 ~k~ilItG~~~-~IG~~la~~l~~~g~~vi~~~r~~-~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 2 NQVAVVIGGGQ-TLGAFLCHGLAEEGYRVAVADINS-EK-------AANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 35799999543 44555554441 245787776542 21 12233344432 2 234677888875432111
Q ss_pred -----ccCcccEEEEcC
Q 014642 113 -----SKRKFDRIIFNF 124 (421)
Q Consensus 113 -----k~~~FDrIIFNF 124 (421)
.....|.||.|=
T Consensus 73 ~~~~~~~~~id~vv~~a 89 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNA 89 (259)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124678888774
No 326
>PRK07774 short chain dehydrogenase; Provisional
Probab=23.59 E-value=2.5e+02 Score=25.69 Aligned_cols=80 Identities=10% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCcccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSELS-- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~Lk-- 113 (421)
+.+||++|=.. .-..+|++++ ..+.+|+.++.+.. .+ ....+++++.+. ...+.+|.++..+...+-
T Consensus 6 ~k~vlItGasg-~iG~~la~~l~~~g~~vi~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 6 DKVAIVTGAAG-GIGQAYAEALAREGASVVVADINAE-GA-------ERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45799999633 3344455443 12457888876532 11 112334444443 346788998876432211
Q ss_pred ----cCcccEEEEcCCC
Q 014642 114 ----KRKFDRIIFNFPH 126 (421)
Q Consensus 114 ----~~~FDrIIFNFPH 126 (421)
....|.||.|=--
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 1468988877544
No 327
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=23.49 E-value=1.3e+02 Score=32.29 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=58.4
Q ss_pred cccccceeeeccCCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhH-HHHHHHHHhC-CCEEEee
Q 014642 24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEA-RSNLDTLKKL-GASIIHG 100 (421)
Q Consensus 24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a-~~Nl~~Lr~~-Gv~Vlhg 100 (421)
|-..-++.+-..++.-+|-++|=||+ -.-||+.+. .+..|++-+..+++++.++|+.+ -+++..|-++ ---|++.
T Consensus 38 d~~~~~~s~~~~k~tl~IaIIGfGnm--GqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlc 115 (480)
T KOG2380|consen 38 DYMVSEDSIEQWKATLVIAIIGFGNM--GQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLC 115 (480)
T ss_pred hcccCcchhhhcccceEEEEEecCcH--HHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEE
Confidence 44444555666777889999999996 455565542 35679999998899999999976 3466666655 3457777
Q ss_pred cccCCcCc
Q 014642 101 VDATEMKE 108 (421)
Q Consensus 101 VDATkL~~ 108 (421)
|.+-.+++
T Consensus 116 tsilsiek 123 (480)
T KOG2380|consen 116 TSILSIEK 123 (480)
T ss_pred ehhhhHHH
Confidence 77766554
No 328
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.43 E-value=2.5e+02 Score=29.72 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=61.0
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHH--------------------------------------
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVK-------------------------------------- 78 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~-------------------------------------- 78 (421)
++++|..|-+=+.+=|.++|+.++-+ -++.|.|+|+|.+
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~ 107 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAM 107 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccC
Confidence 68899999999888888889887533 5777888887764
Q ss_pred hhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc---------cCcccEEEEcCCCCC
Q 014642 79 KFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS---------KRKFDRIIFNFPHAG 128 (421)
Q Consensus 79 KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk---------~~~FDrIIFNFPH~G 128 (421)
.+.++++.+++-+.+|+.++-|+=-........++ .-+==.|-|+||..+
T Consensus 108 n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~~~~~Gdvk~v~~~~~f~~~~ 166 (351)
T KOG2741|consen 108 NVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLSSGVLGDVKSVEVEFGFPFPE 166 (351)
T ss_pred CHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHhccccccceEEEEecCCCcch
Confidence 34467778888888997777665443333222221 122234678888875
No 329
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=23.34 E-value=2e+02 Score=27.14 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=45.7
Q ss_pred CCCeEEEEecC-ChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEEeecccCCcCccccc-
Q 014642 37 SKHQILLVGEG-DFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SIIHGVDATEMKEHSEL- 112 (421)
Q Consensus 37 s~~rILLVGEG-DFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~VlhgVDATkL~~~~~L- 112 (421)
+++.+|+.|=+ +=-.-+++|+.+ ..+.+|+.+..+.+.. ...+.+++|++.+. .+.+.+|.++......+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKG------RFEKKVRELTEPLNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccc------hHHHHHHHHHhccCcceEeecCcCCHHHHHHHH
Confidence 35689999953 222334444333 1345776665543210 12344556655432 34667899887764322
Q ss_pred -----ccCcccEEEEcCC
Q 014642 113 -----SKRKFDRIIFNFP 125 (421)
Q Consensus 113 -----k~~~FDrIIFNFP 125 (421)
...+.|.+|.|=-
T Consensus 79 ~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLA 96 (258)
T ss_pred HHHHHHcCCCCEEEEccc
Confidence 1257999888854
No 330
>PRK08628 short chain dehydrogenase; Provisional
Probab=23.09 E-value=2.4e+02 Score=26.11 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=42.1
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-c-
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-S- 113 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-k- 113 (421)
+.+||+.|=+. .-..+|++.+ ..+.+++.++.+... + +-++.|++.|.. ..+.+|.++......+ .
T Consensus 7 ~~~ilItGasg-giG~~la~~l~~~G~~v~~~~r~~~~-~--------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (258)
T PRK08628 7 DKVVIVTGGAS-GIGAAISLRLAEEGAIPVIFGRSAPD-D--------EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQ 76 (258)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHHcCCcEEEEcCChhh-H--------HHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45788888443 3455555444 134567777665321 1 123445544533 4567888876543221 1
Q ss_pred ----cCcccEEEEcC
Q 014642 114 ----KRKFDRIIFNF 124 (421)
Q Consensus 114 ----~~~FDrIIFNF 124 (421)
....|.||.|-
T Consensus 77 ~~~~~~~id~vi~~a 91 (258)
T PRK08628 77 TVAKFGRIDGLVNNA 91 (258)
T ss_pred HHHhcCCCCEEEECC
Confidence 14689877774
No 331
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=23.05 E-value=94 Score=31.67 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=28.9
Q ss_pred cHHHHHHhHHH--HHHHHHhhHhccCCCCeEEEEecC
Q 014642 135 DDEVIRMHMSL--VEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 135 ~~~~I~~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
|--.|.-|++| |..++.+|..+|++||.+.|--.-
T Consensus 202 QAlRI~VN~El~~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 202 QALRIEVNDELEELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 45567779988 999999999999999997776543
No 332
>PRK06125 short chain dehydrogenase; Provisional
Probab=23.00 E-value=2.8e+02 Score=25.84 Aligned_cols=78 Identities=15% Similarity=0.332 Sum_probs=43.6
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCE-EEeecccCCcCccccc--
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKL-GAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~-VlhgVDATkL~~~~~L-- 112 (421)
+++||+.|=+. ....++++.+. .+.+|++++.+. +.+ +.-.++|++. |.. ..+.+|.++..+...+
T Consensus 7 ~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDA-DAL-------EALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56899999533 34555554431 245888887653 222 1223445443 433 4677898876543221
Q ss_pred ccCcccEEEEcC
Q 014642 113 SKRKFDRIIFNF 124 (421)
Q Consensus 113 k~~~FDrIIFNF 124 (421)
.....|.||.|-
T Consensus 78 ~~g~id~lv~~a 89 (259)
T PRK06125 78 EAGDIDILVNNA 89 (259)
T ss_pred HhCCCCEEEECC
Confidence 125689888773
No 333
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=22.89 E-value=2.3e+02 Score=27.82 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=44.4
Q ss_pred CeEEEEecCChhHHHHHHHhhC-CC-CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 39 HQILLVGEGDFSFSFALSQKFG-SA-SNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~g-s~-~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
+++|+.| |+=.--+++++.+. .+ .+|+.++.+. +.+ .+-.++|+..+..+ .+.+|.++......+
T Consensus 4 k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 74 (314)
T TIGR01289 4 PTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDF-LKA-------EQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQ 74 (314)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCH-HHH-------HHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4778888 44355566665542 34 6788887653 222 12233454444433 467898887653222
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.+|.|=
T Consensus 75 ~~~~~~~iD~lI~nA 89 (314)
T TIGR01289 75 FRESGRPLDALVCNA 89 (314)
T ss_pred HHHhCCCCCEEEECC
Confidence 135789999984
No 334
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.80 E-value=3.6e+02 Score=28.29 Aligned_cols=37 Identities=5% Similarity=0.208 Sum_probs=23.6
Q ss_pred cCCCCeEEEEecCChhHHHHH--HHhhCCCCcEEecccc
Q 014642 35 YSSKHQILLVGEGDFSFSFAL--SQKFGSASNICASSLD 71 (421)
Q Consensus 35 Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD 71 (421)
|....++.++||++...+++- .+.+|-...++.+.-.
T Consensus 290 ~~~~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~ 328 (427)
T cd01971 290 WGLPRRFAVIADSTYALGLARFLVNELGWVPAKQVITDN 328 (427)
T ss_pred hcCCceEEEECChHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 555789999999987776654 3456644444434333
No 335
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=22.69 E-value=5.1e+02 Score=24.94 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=30.2
Q ss_pred ccCCCCeEEEEecCChhHHH-HHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE
Q 014642 34 HYSSKHQILLVGEGDFSFSF-ALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII 98 (421)
Q Consensus 34 ~Yss~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl 98 (421)
...++++||+.|.|-..-+. .||++. .+.+|++|+-+. ++.+.|++.|+..+
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~------------~~~~~~~~~g~~~v 211 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDIND------------DKLALAKEVGADLT 211 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCh------------HHHHHHHHcCCcEE
Confidence 34567899999965433332 234543 145788885442 23555666776544
No 336
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=22.67 E-value=97 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=29.4
Q ss_pred cHHHHHHhHHH--HHHHHHhhHhccCCCCeEEEEecC
Q 014642 135 DDEVIRMHMSL--VEGFFRNASGMLRPRGEVHVSHKT 169 (421)
Q Consensus 135 ~~~~I~~nr~L--L~~FF~SA~~lL~~~GeIHVTLk~ 169 (421)
|--.|.-|.+| |..++..|.++|++||++.|--+-
T Consensus 206 QALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 206 QAIRIYVNDELEELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 55567789998 999999999999999998776543
No 337
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=22.47 E-value=5.7e+02 Score=26.16 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=25.6
Q ss_pred cCCCCeEEEEe-cCChhHHH-HHHHhhCC-CCcEEecccc
Q 014642 35 YSSKHQILLVG-EGDFSFSF-ALSQKFGS-ASNICASSLD 71 (421)
Q Consensus 35 Yss~~rILLVG-EGDFSFSl-SLa~~~gs-~~nLvATSlD 71 (421)
...+++||++| -|-..-.. .+|++.|. +.+|++|..+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~ 212 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN 212 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC
Confidence 45678999998 68777554 46787753 3468887654
No 338
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.24 E-value=1.9e+02 Score=31.20 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642 36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK 114 (421)
Q Consensus 36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~ 114 (421)
.-+++|+++|=|++-.. +++.+. .+..+++--.|. +.++.+++.|..+++| |+++-+--....-
T Consensus 415 ~~~~hiiI~G~G~~G~~--la~~L~~~g~~vvvId~d~------------~~~~~~~~~g~~~i~G-D~~~~~~L~~a~i 479 (558)
T PRK10669 415 DICNHALLVGYGRVGSL--LGEKLLAAGIPLVVIETSR------------TRVDELRERGIRAVLG-NAANEEIMQLAHL 479 (558)
T ss_pred ccCCCEEEECCChHHHH--HHHHHHHCCCCEEEEECCH------------HHHHHHHHCCCeEEEc-CCCCHHHHHhcCc
Confidence 33679999999997665 554442 245565554432 2356777889999999 9998654333344
Q ss_pred CcccEEEEcCC
Q 014642 115 RKFDRIIFNFP 125 (421)
Q Consensus 115 ~~FDrIIFNFP 125 (421)
.+.|.|+-.-|
T Consensus 480 ~~a~~viv~~~ 490 (558)
T PRK10669 480 DCARWLLLTIP 490 (558)
T ss_pred cccCEEEEEcC
Confidence 67887776544
No 339
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=22.22 E-value=3.1e+02 Score=24.62 Aligned_cols=131 Identities=17% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642 37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK 116 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~ 116 (421)
...++|=+|.+==.||..|++..+.+..++|-.+-..+.+ + ++..++. .+ ...-....+.....-....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~----~~~~i~~-d~--~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----Q----NVSFIQG-DI--TNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----T----TEEBTTG-GG--EEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----c----ceeeeec-cc--chhhHHHhhhhhccccccC
Confidence 3479999999999999999988755667888877654211 0 1111100 00 1111111222221112268
Q ss_pred ccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642 117 FDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK 184 (421)
Q Consensus 117 FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~ 184 (421)
||.|+-+= |.+.+. .+.+ ....-+|+..-+.-|..+|+++|...+.+..+... . .+....+.
T Consensus 92 ~dlv~~D~~~~~~g~--~~~d--~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~-~~~~~l~~ 154 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD--RNID--EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-E-ELIYLLKR 154 (181)
T ss_dssp ESEEEE-------SS--HHSS--HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-H-HHHHHHHH
T ss_pred cceeccccccCCCCc--hhhH--HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-H-HHHHHHHh
Confidence 99999987 555532 2111 22234666666778889999999999988887544 4 55554443
No 340
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=22.20 E-value=44 Score=32.75 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=45.1
Q ss_pred cCcccEEEEcCCCCCCCCCcccH-HH------H--HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC---cccHHH-
Q 014642 114 KRKFDRIIFNFPHAGFHGKEEDD-EV------I--RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC---KWHIEE- 180 (421)
Q Consensus 114 ~~~FDrIIFNFPH~G~~GkEd~~-~~------I--~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~---sWnI~~- 180 (421)
...||.||-|-|.......+... .. + ..+..+ .|+..+...|+++|++-+-+.++--+. .-.|.+
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY--AFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH--HHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhh--hhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 57899999999988741111100 00 0 112332 388999999999999877776653222 234543
Q ss_pred HHHhCCcEEEEEeeCCCCCCCC
Q 014642 181 LARKHSLLRLDCVQFRKEDYPG 202 (421)
Q Consensus 181 LAa~aGL~L~~~~~F~~~~YPG 202 (421)
|..+ ..+...+.+....|++
T Consensus 201 ll~~--~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 201 LLEN--GYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHH--EEEEEEEE--TTSSSS
T ss_pred HHhh--chhhEEeecccceecc
Confidence 4443 3456666666555554
No 341
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=22.12 E-value=41 Score=34.55 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCcEEeccc--cCHHHHHHhhhhHHHHHHHHHhC----C----CE-EEeecccCCcCcccccc--cCcccEEEEcC-CCC
Q 014642 62 ASNICASSL--DSYETVVKKFKEARSNLDTLKKL----G----AS-IIHGVDATEMKEHSELS--KRKFDRIIFNF-PHA 127 (421)
Q Consensus 62 ~~nLvATSl--DS~eeL~~KY~~a~~Nl~~Lr~~----G----v~-VlhgVDATkL~~~~~Lk--~~~FDrIIFNF-PH~ 127 (421)
...+|++=. +|.++..+.| +.|++. . .. ..+--|+..-.-...+. ...||.|=..| =|-
T Consensus 85 i~~~vg~Dis~~si~ea~~Ry-------~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY 157 (331)
T PF03291_consen 85 IKHYVGIDISEESIEEARERY-------KQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHY 157 (331)
T ss_dssp -SEEEEEES-HHHHHHHHHHH-------HHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGG
T ss_pred CCEEEEEeCCHHHHHHHHHHH-------HHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHH
Confidence 346776643 4555666666 333321 1 12 23444555432222222 36999999999 577
Q ss_pred CCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642 128 GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA 171 (421)
Q Consensus 128 G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~ 171 (421)
.+. ..+-.+.|+++++..|+|||.+..|..++.
T Consensus 158 ~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 158 AFE-----------SEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp GGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred hcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 762 234467899999999999999999987763
No 342
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=22.00 E-value=73 Score=29.61 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.4
Q ss_pred HHHhhhhHHHHHHHHHhCCCEEEee
Q 014642 76 VVKKFKEARSNLDTLKKLGASIIHG 100 (421)
Q Consensus 76 L~~KY~~a~~Nl~~Lr~~Gv~Vlhg 100 (421)
...-|+++..||..|+++||+.+|-
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~A 66 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHA 66 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEe
Confidence 3455999999999999999998874
No 343
>PRK08278 short chain dehydrogenase; Provisional
Probab=21.98 E-value=1.9e+02 Score=27.50 Aligned_cols=84 Identities=10% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHH--HHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-
Q 014642 38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYE--TVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~e--eL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L- 112 (421)
+++||+.|=+. ....++++.+. .+.+|++++..... .+..+ ..+..++++..|.+ +.+.+|.++..+...+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 6 GKTLFITGASR-GIGLAIALRAARDGANIVIAAKTAEPHPKLPGT---IHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecccccccchhhH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 45789998765 33444554431 24578887765321 22111 12234456666654 4567899887653222
Q ss_pred c-----cCcccEEEEcCC
Q 014642 113 S-----KRKFDRIIFNFP 125 (421)
Q Consensus 113 k-----~~~FDrIIFNFP 125 (421)
. ..++|.||.|--
T Consensus 82 ~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 82 AKAVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 1 147899998864
No 344
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.84 E-value=2.2e+02 Score=29.21 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=17.2
Q ss_pred ecCCCCcCcccHHHHHH---hCCcEEEEEee
Q 014642 167 HKTTAPFCKWHIEELAR---KHSLLRLDCVQ 194 (421)
Q Consensus 167 Lk~g~PY~sWnI~~LAa---~aGL~L~~~~~ 194 (421)
+..+.|+....|.++.. ..|..+....+
T Consensus 159 V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r 189 (453)
T PRK09496 159 VYEGSPLVGKPLSDLREHFPDIDVRVVAIFR 189 (453)
T ss_pred eCCCCccCCcCHHHhhhhcCCCceEEEEEEE
Confidence 33445666667777774 36777666544
No 345
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.77 E-value=2.4e+02 Score=26.43 Aligned_cols=77 Identities=14% Similarity=0.303 Sum_probs=43.4
Q ss_pred eEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc-----
Q 014642 40 QILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL----- 112 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L----- 112 (421)
+||++|=.. .-..+|++.+ ..+.+|+++..+. +. .+.-+.+|+..|.. ....+|.++......+
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGWRLALADVNE-EG-------GEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCCEEEEEeCCH-HH-------HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 688888544 2333444333 2356788887653 21 22334556655533 3567798887643222
Q ss_pred -ccCcccEEEEcCC
Q 014642 113 -SKRKFDRIIFNFP 125 (421)
Q Consensus 113 -k~~~FDrIIFNFP 125 (421)
....+|.||.|--
T Consensus 73 ~~~~~id~lI~~ag 86 (270)
T PRK05650 73 EKWGGIDVIVNNAG 86 (270)
T ss_pred HHcCCCCEEEECCC
Confidence 1257999998854
No 346
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.69 E-value=6.8e+02 Score=23.54 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc--
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-- 112 (421)
++++||++|=+. --..+|++.+ ..+.+|++++.+. +++ ....+.|.+.+.. ..+.+|+++..+...+
T Consensus 8 ~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 8 AGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQ-EKV-------DAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 356899998644 2333344333 1356788887663 222 1223445544433 5678899875533221
Q ss_pred ----ccCcccEEEEc
Q 014642 113 ----SKRKFDRIIFN 123 (421)
Q Consensus 113 ----k~~~FDrIIFN 123 (421)
....+|.||.|
T Consensus 79 ~~~~~~~~iD~vi~~ 93 (264)
T PRK07576 79 QIADEFGPIDVLVSG 93 (264)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12468999976
No 347
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.25 E-value=6.9e+02 Score=23.48 Aligned_cols=76 Identities=9% Similarity=0.239 Sum_probs=43.2
Q ss_pred eEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCccccc----
Q 014642 40 QILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSEL---- 112 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~L---- 112 (421)
+||++|=+. ...+++++.+ ..+.+|++++.+. +.+ ++..++|+..|.. ....+|.++......+
T Consensus 2 ~vlItGas~-giG~~la~~la~~G~~vv~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (272)
T PRK07832 2 RCFVTGAAS-GIGRATALRLAAQGAELFLTDRDA-DGL-------AQTVADARALGGTVPEHRALDISDYDAVAAFAADI 72 (272)
T ss_pred EEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHH
Confidence 578888654 4555555544 1345788876653 222 2335556655543 3357888876543211
Q ss_pred --ccCcccEEEEcC
Q 014642 113 --SKRKFDRIIFNF 124 (421)
Q Consensus 113 --k~~~FDrIIFNF 124 (421)
.....|.||.|-
T Consensus 73 ~~~~~~id~lv~~a 86 (272)
T PRK07832 73 HAAHGSMDVVMNIA 86 (272)
T ss_pred HHhcCCCCEEEECC
Confidence 124689888775
No 348
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=21.15 E-value=4.7e+02 Score=27.60 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=57.4
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC---cCcccccccCc
Q 014642 40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE---MKEHSELSKRK 116 (421)
Q Consensus 40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk---L~~~~~Lk~~~ 116 (421)
+||++||.==-.|.+|+. ++ + ..+..|+-++..+. .| |+..|+ ++.. +.....+ ...
T Consensus 47 ~~~i~nd~fGal~~~l~~-~~-~-~~~~ds~~~~~~~~-------~n---~~~n~~------~~~~~~~~~~~~~~-~~~ 106 (378)
T PRK15001 47 PVLILNDAFGALSCALAE-HK-P-YSIGDSYISELATR-------EN---LRLNGI------DESSVKFLDSTADY-PQQ 106 (378)
T ss_pred CEEEEcCchhHHHHHHHh-CC-C-CeeehHHHHHHHHH-------HH---HHHcCC------Ccccceeecccccc-cCC
Confidence 899999965555566653 32 2 34455554443332 34 344443 2221 1111122 245
Q ss_pred ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642 117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT 170 (421)
Q Consensus 117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g 170 (421)
+|.|+.=.|-. ..++...+......|.++++|.+.=+.+
T Consensus 107 ~d~vl~~~PK~---------------~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 107 PGVVLIKVPKT---------------LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred CCEEEEEeCCC---------------HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 99999988854 3567777788889999999988776654
No 349
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.94 E-value=1.8e+02 Score=28.36 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCccccc--
Q 014642 37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSEL-- 112 (421)
Q Consensus 37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~L-- 112 (421)
++++||+.|=..+ --.++++.+ ..+.+|+.++.+. +. +...+++|+..+.. ..+.+|.++......+
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNL-KK-------AEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCH-HH-------HHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 3567999985542 233344333 1246788887652 11 22234445433333 3457888887653222
Q ss_pred ----ccCcccEEEEc
Q 014642 113 ----SKRKFDRIIFN 123 (421)
Q Consensus 113 ----k~~~FDrIIFN 123 (421)
...+.|.||.|
T Consensus 76 ~~~~~~~~iD~li~n 90 (322)
T PRK07453 76 DFRALGKPLDALVCN 90 (322)
T ss_pred HHHHhCCCccEEEEC
Confidence 12468998888
No 350
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=20.93 E-value=1.1e+02 Score=26.66 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=33.8
Q ss_pred CeEEEEecCChh---HHHHHHHhhCCCCcEEeccccCHHH--HHHhhhhHHHHHHHHHhCCCEE
Q 014642 39 HQILLVGEGDFS---FSFALSQKFGSASNICASSLDSYET--VVKKFKEARSNLDTLKKLGASI 97 (421)
Q Consensus 39 ~rILLVGEGDFS---FSlSLa~~~gs~~nLvATSlDS~ee--L~~KY~~a~~Nl~~Lr~~Gv~V 97 (421)
.+||+|-.||-. ++-+|++++....++.+.|-=.... -..-.+ .-++.|++.|+.+
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~~~g~~~~~---~a~~~l~~~Gid~ 61 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGWHVGGRPDP---RAIAVLAEHGIDI 61 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCccCCCCCCH---HHHHHHHHcCCCc
Confidence 379999999999 9999998874322454444322110 001122 2377888877653
No 351
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.75 E-value=2.9e+02 Score=26.64 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=41.5
Q ss_pred ccCCCCeEEEEec-CChhHHHH-HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642 34 HYSSKHQILLVGE-GDFSFSFA-LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE 111 (421)
Q Consensus 34 ~Yss~~rILLVGE-GDFSFSlS-La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~ 111 (421)
...++.+||+.|- |...-++. +|++.| .++++|+-++ ..+.|++.|+.++...+-....+...
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-------------~~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-------------KEEAVRALGADTVILRDAPLLADAKA 238 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-------------hhHHHHhcCCeEEEeCCCccHHHHHh
Confidence 3456789999997 88777654 467765 4578776321 13455667876544322111111111
Q ss_pred cccCcccEEE
Q 014642 112 LSKRKFDRII 121 (421)
Q Consensus 112 Lk~~~FDrII 121 (421)
.....+|.||
T Consensus 239 ~~~~~~d~vi 248 (350)
T cd08274 239 LGGEPVDVVA 248 (350)
T ss_pred hCCCCCcEEE
Confidence 2345689776
No 352
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.70 E-value=2.5e+02 Score=26.48 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=41.5
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc-----
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL----- 112 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L----- 112 (421)
++||+.|=+. ....+|++.+ ..+.+|++++.+.. +++.+...|+. .+.+|.++......+
T Consensus 2 k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~------------~~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSS-GIGRALADAFKAAGYEVWATARKAE------------DVEALAAAGFT-AVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCC-hHHHHHHHHHHHCCCEEEEEeCCHH------------HHHHHHHCCCe-EEEeeCCCHHHHHHHHHHHH
Confidence 4688888543 4555666554 23568998876532 23344455654 456787775442211
Q ss_pred -ccCcccEEEEcC
Q 014642 113 -SKRKFDRIIFNF 124 (421)
Q Consensus 113 -k~~~FDrIIFNF 124 (421)
.....|.||.|=
T Consensus 68 ~~~~~id~vi~~a 80 (274)
T PRK05693 68 AEHGGLDVLINNA 80 (274)
T ss_pred HhcCCCCEEEECC
Confidence 125689888763
No 353
>PRK05876 short chain dehydrogenase; Provisional
Probab=20.64 E-value=3.3e+02 Score=26.13 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=45.0
Q ss_pred CCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc---
Q 014642 38 KHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL--- 112 (421)
Q Consensus 38 ~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L--- 112 (421)
++++|+.|=+.+= ..+||+.+ ..+.+|+.+..+. +.+ .+.+++|+..|..+ .+.+|.++......+
T Consensus 6 ~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~-~~l-------~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 6 GRGAVITGGASGI-GLATGTEFARRGARVVLGDVDK-PGL-------RQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678999876532 33344333 1245777776552 222 23456777777654 467899887654322
Q ss_pred ---ccCcccEEEEcC
Q 014642 113 ---SKRKFDRIIFNF 124 (421)
Q Consensus 113 ---k~~~FDrIIFNF 124 (421)
...+.|.||.|=
T Consensus 77 ~~~~~g~id~li~nA 91 (275)
T PRK05876 77 AFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678887764
No 354
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=20.48 E-value=6.6e+02 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCCeEEEEecCChh-HHHHHHHhhCCCCcEEecc
Q 014642 37 SKHQILLVGEGDFS-FSFALSQKFGSASNICASS 69 (421)
Q Consensus 37 s~~rILLVGEGDFS-FSlSLa~~~gs~~nLvATS 69 (421)
..+++|++|-|.-- ++..||+++| ...|+++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~ 176 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWE 176 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeC
Confidence 45789999988765 4455678775 33465553
No 355
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=20.13 E-value=93 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCeEEEEecCChhHHH-HHHHhhCCCCcEEeccccC
Q 014642 38 KHQILLVGEGDFSFSF-ALSQKFGSASNICASSLDS 72 (421)
Q Consensus 38 ~~rILLVGEGDFSFSl-SLa~~~gs~~nLvATSlDS 72 (421)
...|.++|||.|.++. .|..+-....+|+--.++.
T Consensus 69 ~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~ivV~nN 104 (186)
T cd02015 69 KTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNN 104 (186)
T ss_pred CeEEEEEcccHHhccHHHHHHHHHhCCCeEEEEEEC
Confidence 3467899999988865 2332222234677777765
No 356
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=20.07 E-value=3.5e+02 Score=28.01 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=31.3
Q ss_pred ccCCCCeEEEEecCC--hhHHHHHHHhhCCCCcEEeccccCHHHHHH
Q 014642 34 HYSSKHQILLVGEGD--FSFSFALSQKFGSASNICASSLDSYETVVK 78 (421)
Q Consensus 34 ~Yss~~rILLVGEGD--FSFSlSLa~~~gs~~nLvATSlDS~eeL~~ 78 (421)
..+++++||+.|=+. =+|+.-||++.+ ...++|+|-++..++.+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k 199 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVK 199 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHH
Confidence 445567888887653 477788899987 67899988776444443
No 357
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.04 E-value=2.3e+02 Score=25.79 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=39.2
Q ss_pred CeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc----cc
Q 014642 39 HQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE----LS 113 (421)
Q Consensus 39 ~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~----Lk 113 (421)
+++|++|=.. ....++++.+ ..+.+|++++.+... + ..++.+. ++. .+.+|.++...... +.
T Consensus 2 k~vlItG~sg-~iG~~la~~l~~~G~~V~~~~r~~~~-~--------~~~~~~~--~~~-~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASR-GLGLGLVDRLLERGWQVTATVRGPQQ-D--------TALQALP--GVH-IEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHhCCCEEEEEeCCCcc-h--------HHHHhcc--ccc-eEEcCCCCHHHHHHHHHHhh
Confidence 4688888544 2333344333 124578888766321 1 1122221 333 34568777543322 22
Q ss_pred cCcccEEEEcCCC
Q 014642 114 KRKFDRIIFNFPH 126 (421)
Q Consensus 114 ~~~FDrIIFNFPH 126 (421)
...+|.||.|-.-
T Consensus 69 ~~~id~vi~~ag~ 81 (225)
T PRK08177 69 GQRFDLLFVNAGI 81 (225)
T ss_pred cCCCCEEEEcCcc
Confidence 3579999998644
Done!