Query 014643
Match_columns 421
No_of_seqs 300 out of 1710
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 65.9 3 0.0001 30.3 2.0 28 136-163 18-45 (56)
2 2dkt_A Ring finger and CHY zin 56.1 4.2 0.00014 35.2 1.5 46 131-176 77-126 (143)
3 3j21_g 50S ribosomal protein L 53.2 7.2 0.00024 27.8 2.1 28 136-163 13-40 (51)
4 1wfk_A Zinc finger, FYVE domai 40.1 11 0.00037 29.6 1.5 24 137-160 9-34 (88)
5 1joc_A EEA1, early endosomal a 35.8 14 0.00048 30.9 1.6 23 138-160 70-94 (125)
6 1dvp_A HRS, hepatocyte growth 30.4 18 0.00062 32.9 1.6 24 138-161 162-187 (220)
7 1vfy_A Phosphatidylinositol-3- 29.0 15 0.0005 27.7 0.6 22 139-160 13-36 (73)
8 3zyq_A Hepatocyte growth facto 27.6 21 0.00072 32.7 1.5 24 138-161 165-190 (226)
9 1x4u_A Zinc finger, FYVE domai 26.7 17 0.00059 28.0 0.6 22 139-160 16-39 (84)
10 2yw8_A RUN and FYVE domain-con 25.5 18 0.00063 27.7 0.6 23 138-160 20-44 (82)
11 1z2q_A LM5-1; membrane protein 25.2 19 0.00064 27.8 0.6 23 138-160 22-46 (84)
12 3u5e_m 60S ribosomal protein L 25.1 29 0.001 28.6 1.8 25 136-160 92-118 (128)
13 3t7l_A Zinc finger FYVE domain 23.1 32 0.0011 26.8 1.6 23 138-160 21-45 (90)
14 2pg3_A Queuosine biosynthesis 22.4 22 0.00075 32.1 0.5 19 146-164 190-208 (232)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=65.91 E-value=3 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=23.9
Q ss_pred ceeeccccccccCCCCcccccccccccc
Q 014643 136 RVKYCDTCMLYRPPRCSHCSICNNCVER 163 (421)
Q Consensus 136 ~~k~C~tC~i~rP~Rs~HCs~C~~CV~r 163 (421)
..+.|..|...-|+|+..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4568999999999999999999866544
No 2
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=56.14 E-value=4.2 Score=35.21 Aligned_cols=46 Identities=24% Similarity=0.523 Sum_probs=34.2
Q ss_pred cCcccceeeccccccccCCC-Ccccccccccccc---ccccCCCCCceee
Q 014643 131 NGVPVRVKYCDTCMLYRPPR-CSHCSICNNCVER---FDHHCPWVGQCIG 176 (421)
Q Consensus 131 ng~~~~~k~C~tC~i~rP~R-s~HCs~C~~CV~r---fDHHCpWv~nCIG 176 (421)
.|..+...||.+|+++.+.+ ..||..||-|-.. ---||.=-|-|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 46677788999999997766 4888888888775 2246777777754
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.21 E-value=7.2 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.8
Q ss_pred ceeeccccccccCCCCcccccccccccc
Q 014643 136 RVKYCDTCMLYRPPRCSHCSICNNCVER 163 (421)
Q Consensus 136 ~~k~C~tC~i~rP~Rs~HCs~C~~CV~r 163 (421)
..+.|..|...-|+++..|+.||.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3568999999999999999999876444
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.14 E-value=11 Score=29.64 Aligned_cols=24 Identities=17% Similarity=0.359 Sum_probs=17.0
Q ss_pred eeeccccccc--cCCCCccccccccc
Q 014643 137 VKYCDTCMLY--RPPRCSHCSICNNC 160 (421)
Q Consensus 137 ~k~C~tC~i~--rP~Rs~HCs~C~~C 160 (421)
...|..|... --.|-|||+.||+-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 3468888753 23578999999874
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.82 E-value=14 Score=30.91 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=16.3
Q ss_pred eeccccccc--cCCCCccccccccc
Q 014643 138 KYCDTCMLY--RPPRCSHCSICNNC 160 (421)
Q Consensus 138 k~C~tC~i~--rP~Rs~HCs~C~~C 160 (421)
..|..|... --.|-|||+.||+-
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCcCcCCccccccccccCCCCCeE
Confidence 358888653 23588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.37 E-value=18 Score=32.91 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=17.2
Q ss_pred eeccccccc--cCCCCcccccccccc
Q 014643 138 KYCDTCMLY--RPPRCSHCSICNNCV 161 (421)
Q Consensus 138 k~C~tC~i~--rP~Rs~HCs~C~~CV 161 (421)
+.|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888642 124889999998753
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.05 E-value=15 Score=27.66 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=15.7
Q ss_pred eccccccc--cCCCCccccccccc
Q 014643 139 YCDTCMLY--RPPRCSHCSICNNC 160 (421)
Q Consensus 139 ~C~tC~i~--rP~Rs~HCs~C~~C 160 (421)
.|..|... --.|-|||+.||+-
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCE
T ss_pred cccCCCCccCCccccccCCCCCEE
Confidence 47777653 22488999999874
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.64 E-value=21 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=16.4
Q ss_pred eecccccccc--CCCCcccccccccc
Q 014643 138 KYCDTCMLYR--PPRCSHCSICNNCV 161 (421)
Q Consensus 138 k~C~tC~i~r--P~Rs~HCs~C~~CV 161 (421)
..|..|...= --|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 4688886421 23789999998753
No 9
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.70 E-value=17 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=15.8
Q ss_pred eccccccc--cCCCCccccccccc
Q 014643 139 YCDTCMLY--RPPRCSHCSICNNC 160 (421)
Q Consensus 139 ~C~tC~i~--rP~Rs~HCs~C~~C 160 (421)
.|..|... --.|-|||+.||+-
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCCE
T ss_pred cCcCcCCccccchhhhhhcCCCcE
Confidence 57777652 23588999999873
No 10
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=25.49 E-value=18 Score=27.73 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=16.2
Q ss_pred eecccccccc--CCCCccccccccc
Q 014643 138 KYCDTCMLYR--PPRCSHCSICNNC 160 (421)
Q Consensus 138 k~C~tC~i~r--P~Rs~HCs~C~~C 160 (421)
..|..|...= -.|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCcCCcccCccccccCCCCCCE
Confidence 3588886522 2488999999874
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=25.19 E-value=19 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.545 Sum_probs=16.4
Q ss_pred eecccccccc--CCCCccccccccc
Q 014643 138 KYCDTCMLYR--PPRCSHCSICNNC 160 (421)
Q Consensus 138 k~C~tC~i~r--P~Rs~HCs~C~~C 160 (421)
..|..|...= -.|-|||+.||+-
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCcCcCCccccchhcccccCCCcE
Confidence 4688886532 2488999999874
No 12
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.12 E-value=29 Score=28.61 Aligned_cols=25 Identities=28% Similarity=0.790 Sum_probs=21.7
Q ss_pred ceeeccccccccCCCCcccc--ccccc
Q 014643 136 RVKYCDTCMLYRPPRCSHCS--ICNNC 160 (421)
Q Consensus 136 ~~k~C~tC~i~rP~Rs~HCs--~C~~C 160 (421)
..+.|..|...-|+|++.|+ .|+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 35799999999999999999 48764
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.13 E-value=32 Score=26.85 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=15.7
Q ss_pred eecccccccc--CCCCccccccccc
Q 014643 138 KYCDTCMLYR--PPRCSHCSICNNC 160 (421)
Q Consensus 138 k~C~tC~i~r--P~Rs~HCs~C~~C 160 (421)
..|..|...= -.|-|||+.||.-
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CcCcCCCCcccchhhCccccCCCCE
Confidence 4588886422 2378999999874
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=22.41 E-value=22 Score=32.14 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=15.2
Q ss_pred ccCCCCccccccccccccc
Q 014643 146 YRPPRCSHCSICNNCVERF 164 (421)
Q Consensus 146 ~rP~Rs~HCs~C~~CV~rf 164 (421)
+++.|..||..|..|+.|.
T Consensus 190 ~~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TTSCCTTTTSCSHHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHHH
Confidence 4566668999999998874
Done!