Query 014643
Match_columns 421
No_of_seqs 300 out of 1710
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 15:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 78.4 0.48 3.5E-05 32.6 2.0 25 136-160 18-42 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 60.1 1 7.5E-05 38.6 0.5 24 138-163 183-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 49.1 2.2 0.00016 29.2 0.7 13 151-163 34-46 (56)
4 d2dmda2 g.37.1.1 (A:8-33) Zinc 42.0 3.4 0.00025 23.3 0.5 15 152-166 2-16 (26)
5 d2adra2 g.37.1.1 (A:131-161) A 39.6 3 0.00022 24.8 0.1 14 152-165 2-15 (31)
6 d1vfya_ g.50.1.1 (A:) vps27p p 37.6 5.4 0.00039 27.9 1.2 22 140-161 8-31 (67)
7 d1joca1 g.50.1.1 (A:1348-1411) 36.9 6.5 0.00048 27.1 1.6 23 139-161 10-34 (64)
8 d1wfka_ g.50.1.1 (A:) Zinc fin 35.4 6.4 0.00047 29.1 1.4 23 138-160 10-34 (88)
9 d2c6aa1 g.41.11.1 (A:290-335) 34.6 7.2 0.00052 25.4 1.3 20 139-158 15-34 (46)
10 d2dkta2 g.93.1.1 (A:82-137) RI 33.5 4.1 0.0003 27.9 -0.1 41 138-178 3-47 (56)
11 d1dvpa2 g.50.1.1 (A:149-220) H 32.4 8.3 0.0006 27.3 1.5 23 139-161 15-39 (72)
12 d1njqa_ g.37.1.3 (A:) SUPERMAN 30.1 7.3 0.00053 24.3 0.7 13 148-160 2-14 (37)
13 d2cr8a1 g.41.11.1 (A:8-48) MDM 27.8 11 0.00083 23.8 1.4 20 139-158 6-25 (41)
14 d1lpva_ g.62.1.1 (A:) DM domai 25.2 10 0.00076 25.3 0.9 26 147-172 6-33 (52)
15 d1olza3 g.16.2.1 (A:481-536) S 23.6 5.1 0.00037 27.2 -1.0 23 155-177 6-31 (56)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=78.42 E-value=0.48 Score=32.56 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=22.0
Q ss_pred ceeeccccccccCCCCccccccccc
Q 014643 136 RVKYCDTCMLYRPPRCSHCSICNNC 160 (421)
Q Consensus 136 ~~k~C~tC~i~rP~Rs~HCs~C~~C 160 (421)
..+.|..|...-|+|+..|+.|+.=
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~~ 42 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hhHHHhhccccCCccccccccCCCC
Confidence 4678999999999999999988763
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=60.09 E-value=1 Score=38.60 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.4
Q ss_pred eeccccccccCCCCcccccccccccc
Q 014643 138 KYCDTCMLYRPPRCSHCSICNNCVER 163 (421)
Q Consensus 138 k~C~tC~i~rP~Rs~HCs~C~~CV~r 163 (421)
..-.+| |+|.|.+||..|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 445677 788899999999999998
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.09 E-value=2.2 Score=29.23 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=6.7
Q ss_pred Ccccccccccccc
Q 014643 151 CSHCSICNNCVER 163 (421)
Q Consensus 151 s~HCs~C~~CV~r 163 (421)
-.||..|+.|+..
T Consensus 34 ffHC~~C~~C~~~ 46 (56)
T d2dkta2 34 FFHCLKCNLCLTT 46 (56)
T ss_dssp EEEETTTTEEEEG
T ss_pred ccccCccccccCc
Confidence 4455555555533
No 4
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.96 E-value=3.4 Score=23.30 Aligned_cols=15 Identities=33% Similarity=1.030 Sum_probs=12.1
Q ss_pred ccccccccccccccc
Q 014643 152 SHCSICNNCVERFDH 166 (421)
Q Consensus 152 ~HCs~C~~CV~rfDH 166 (421)
|.|.+|++|-.|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999888663
No 5
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=39.61 E-value=3 Score=24.80 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.1
Q ss_pred cccccccccccccc
Q 014643 152 SHCSICNNCVERFD 165 (421)
Q Consensus 152 ~HCs~C~~CV~rfD 165 (421)
..|.+|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 46999999999877
No 6
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.56 E-value=5.4 Score=27.88 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=15.2
Q ss_pred cccccc--ccCCCCcccccccccc
Q 014643 140 CDTCML--YRPPRCSHCSICNNCV 161 (421)
Q Consensus 140 C~tC~i--~rP~Rs~HCs~C~~CV 161 (421)
|..|.. ---.|-|||+.||+-+
T Consensus 8 C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 8 CMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp CTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCcccCcccccccccCCCEe
Confidence 777754 2234789999998754
No 7
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.89 E-value=6.5 Score=27.15 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=15.5
Q ss_pred eccccccc--cCCCCcccccccccc
Q 014643 139 YCDTCMLY--RPPRCSHCSICNNCV 161 (421)
Q Consensus 139 ~C~tC~i~--rP~Rs~HCs~C~~CV 161 (421)
-|..|... --.|-|||+.||+-+
T Consensus 10 ~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 10 NCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCcCcCCcccCCccccchhhhCCee
Confidence 47777542 224789999998854
No 8
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.38 E-value=6.4 Score=29.11 Aligned_cols=23 Identities=17% Similarity=0.402 Sum_probs=16.5
Q ss_pred eeccccccc--cCCCCccccccccc
Q 014643 138 KYCDTCMLY--RPPRCSHCSICNNC 160 (421)
Q Consensus 138 k~C~tC~i~--rP~Rs~HCs~C~~C 160 (421)
..|..|+.. ---|-|||+.|++.
T Consensus 10 s~C~~C~~~Fs~~~rrhhCr~CG~v 34 (88)
T d1wfka_ 10 SRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCcccCchhccccccccccccChh
Confidence 358888652 24478999999985
No 9
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.56 E-value=7.2 Score=25.35 Aligned_cols=20 Identities=40% Similarity=0.891 Sum_probs=17.2
Q ss_pred eccccccccCCCCccccccc
Q 014643 139 YCDTCMLYRPPRCSHCSICN 158 (421)
Q Consensus 139 ~C~tC~i~rP~Rs~HCs~C~ 158 (421)
-|..|+..-||-..||..|=
T Consensus 15 kC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred cCccccccCCcchhHhHHHH
Confidence 59999999999999988773
No 10
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.46 E-value=4.1 Score=27.87 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=30.5
Q ss_pred eeccccccccCCC-Ccccccccccccc---ccccCCCCCceeecc
Q 014643 138 KYCDTCMLYRPPR-CSHCSICNNCVER---FDHHCPWVGQCIGLR 178 (421)
Q Consensus 138 k~C~tC~i~rP~R-s~HCs~C~~CV~r---fDHHCpWv~nCIG~r 178 (421)
-||..|+++--.+ ..||..||-|-.. ---||.=-+.|+...
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 3899999985443 5899999999643 235788888888653
No 11
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.37 E-value=8.3 Score=27.29 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=16.3
Q ss_pred eccccccc--cCCCCcccccccccc
Q 014643 139 YCDTCMLY--RPPRCSHCSICNNCV 161 (421)
Q Consensus 139 ~C~tC~i~--rP~Rs~HCs~C~~CV 161 (421)
.|..|... --.|-|||+.||+.+
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccccCCCcccCccccccccccCCee
Confidence 48778652 234789999998854
No 12
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.14 E-value=7.3 Score=24.29 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=10.7
Q ss_pred CCCCccccccccc
Q 014643 148 PPRCSHCSICNNC 160 (421)
Q Consensus 148 P~Rs~HCs~C~~C 160 (421)
|+|.+-|++|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7888889998873
No 13
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.78 E-value=11 Score=23.75 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=15.8
Q ss_pred eccccccccCCCCccccccc
Q 014643 139 YCDTCMLYRPPRCSHCSICN 158 (421)
Q Consensus 139 ~C~tC~i~rP~Rs~HCs~C~ 158 (421)
-|..|+..-||=..||..|=
T Consensus 6 kC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecCcccccCCcchhHHHHHH
Confidence 48888888888888887663
No 14
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.16 E-value=10 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=18.0
Q ss_pred cCCCCccccccccccccccc--cCCCCC
Q 014643 147 RPPRCSHCSICNNCVERFDH--HCPWVG 172 (421)
Q Consensus 147 rP~Rs~HCs~C~~CV~rfDH--HCpWv~ 172 (421)
+||++..|+.=|.-+..-+| +|||-+
T Consensus 6 ~~p~CaRCrNHG~~~~lKgHKr~C~~~~ 33 (52)
T d1lpva_ 6 TPPNCARCRNHGLKITLKGHKRYCKFRY 33 (52)
T ss_dssp CCSSCHHHHTTTCCCTTTTCGGGCTTTT
T ss_pred CCCCCcccccCCceeecCCcccccCCCC
Confidence 45666666666666666666 899975
No 15
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.65 E-value=5.1 Score=27.17 Aligned_cols=23 Identities=35% Similarity=0.995 Sum_probs=18.5
Q ss_pred cccccccccccccCCCC---Cceeec
Q 014643 155 SICNNCVERFDHHCPWV---GQCIGL 177 (421)
Q Consensus 155 s~C~~CV~rfDHHCpWv---~nCIG~ 177 (421)
+.|..||.-.|-||.|= +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 35889999999999993 668754
Done!