BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014644
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/414 (44%), Positives = 255/414 (61%), Gaps = 37/414 (8%)
Query: 5 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 64
S S EY + FQSHEPEFDYLKSLEIEEKIN++RW N + F+LSTNDKTIKLWK
Sbjct: 65 SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK- 123
Query: 65 RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 124
I E D P E L E++ + P+ + M
Sbjct: 124 -------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMDLM------- 163
Query: 125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
V A ++++ +AH + D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223
Query: 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
+LTEVIT+AEFHP CN YSSS+G +RL DMR SALCD +++ + E ++SFF+
Sbjct: 224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFS 282
Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342
Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
FDKFEC +G TGSY+N R+F + IT+EA + EN KP PR +
Sbjct: 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTVLKPRKVCA 399
Query: 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
S R+ E S S + + K+LH AWHP N+IA A N+L+
Sbjct: 400 SGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNLYI 441
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 243 FTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLY 299
F ++ +F N D + +S D + L I+ +S V AT + E R KLCD Y
Sbjct: 146 FEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEAR-KLCDEY 204
Query: 300 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358
+ +FD+ +C + G FA Y + + + G GG+ + A R +L+
Sbjct: 205 DALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERANVLEPG 263
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 243 FTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLY 299
F ++ +F N D + S D + L I+ +S V AT + E R KLCD Y
Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFLEEAR-KLCDEY 216
Query: 300 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358
+ +FD+ +C G FA Y + + + G GG+ + A R +L+
Sbjct: 217 DALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLTTAKGLGGGVPIGAVIVNERANVLEPG 275
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 44 APNGSMFILSTNDKTIKLWKVR----------DQKVKKIKE--------MDHFPFVSSEN 85
+P+GS F+ S++D+TI+LW+ + Q+V + + +DH + N
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 86 TLLAEKNFMNEHNPPSFAHGYHLEWT----ENMATKIANVGNS--VHARCQKVYPHAHDF 139
+ +++ E HL++ EN A +I + N+ +R Q H
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQ------HKK 1010
Query: 140 XXXXXXXXXDCETFV-SADDLRINLWNLEISDQCF 173
D +T + S+DD I +WN ++ D+C
Sbjct: 1011 TVWHIQFTADEKTLISSSDDAEIQVWNWQL-DKCI 1044
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 44 APNGSMFILSTNDKTIKLW---KVRDQKVKKIKEMDHFPFVSSENTLLAEKN-------- 92
+P+GS F+ +++D+TI++W KV +K+ F +E +LA N
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 93 -------FMNEHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVYPH--AHDF 139
++ E HLE+ E+ A KI + N+ +V+ H
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN------RVFSSGVGHKK 1011
Query: 140 XXXXXXXXXDCETFV-SADDLRINLWNLEISDQCF 173
D +T + S++D I +WN + D F
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1046
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 44 APNGSMFILSTNDKTIKLW---KVRDQKVKKIKEMDHFPFVSSENTLLAEKN-------- 92
+P+GS F+ +++D+TI++W KV +K+ F +E +LA N
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 93 -------FMNEHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVYPH--AHDF 139
++ E HLE+ E+ A KI + N+ +V+ H
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN------RVFSSGVGHKK 1004
Query: 140 XXXXXXXXXDCETFV-SADDLRINLWNLEISDQCF 173
D +T + S++D I +WN + D F
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 71
E D LK++ + + W +P+G+ ++ DKTIK+W V KV+K
Sbjct: 229 EDDSLKNVAHSGSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEK 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 35 SPNGEWLAASSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 86
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 87 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 137 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 177
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 178 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 230
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 231 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 267
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 249
I + + P Y +LA +S+ V+L D+R+++ C + + +S +S T
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD-QHNGKKSQAVESANTAHNGK 247
Query: 250 ISDIKFANDGQHLLSRDYMN-LKLWD 274
++ + F +DG HLL+ N ++LW+
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 86
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 87 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 137 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 177
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 178 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 230
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 231 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 267
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSN----- 84
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+ +++ KI +V + +C K ++ + D + +
Sbjct: 85 --LLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 140 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 180
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 181 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 233
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 234 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 270
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 31 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 82
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 83 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 133 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 173
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 174 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 226
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 227 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 263
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 246 IIASISDIKFANDGQHLLSR-DYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDS 303
II I+ + F+ G+ LL+ D N +WD ++ D V L +D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------------LAGHD- 312
Query: 304 IFDKFEC-SVSGDGLHFATGSYSNLLRIF 331
++ C V+ DG+ ATGS+ + L+I+
Sbjct: 313 --NRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 246 IIASISDIKFANDGQHLLSR-DYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDS 303
II I+ + F+ G+ LL+ D N +WD ++ D V L +D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------------LAGHD- 312
Query: 304 IFDKFEC-SVSGDGLHFATGSYSNLLRIF 331
++ C V+ DG+ ATGS+ + L+I+
Sbjct: 313 --NRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 42 CAAPNGSMFILSTNDKTIKLWKVRDQKV--------KKIKEMDHFP 79
C +P+G D+ I++W + ++K+ + I +D+FP
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 246 IIASISDIKFANDGQHLLSR-DYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDS 303
II I+ + F+ G+ LL+ D N +WD ++ D V L +D
Sbjct: 280 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------------LAGHD- 323
Query: 304 IFDKFEC-SVSGDGLHFATGSYSNLLRIF 331
++ C V+ DG+ ATGS+ + L+I+
Sbjct: 324 --NRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 49 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 100
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 101 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 151 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 191
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 192 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 244
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 245 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 281
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N
Sbjct: 56 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSN----- 102
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+ +++ KI +V + +C K ++ + D + +
Sbjct: 103 --LLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 158 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 198
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 199 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 251
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 252 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 288
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N
Sbjct: 54 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSN----- 100
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+ +++ KI +V + +C K ++ + D + +
Sbjct: 101 --LLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 156 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 196
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 197 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 249
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 250 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 286
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 246 IIASISDIKFANDGQHLLSR-DYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDS 303
II I+ + F+ G+ LL+ D N +WD ++ D V L +D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------------LAGHD- 312
Query: 304 IFDKFEC-SVSGDGLHFATGSYSNLLRIF 331
++ C V+ DG+ ATGS+ + L+I+
Sbjct: 313 --NRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 246 IIASISDIKFANDGQHLLSR-DYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDS 303
II I+ + F+ G+ LL+ D N +WD ++ D V L +D
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV---------------LAGHD- 312
Query: 304 IFDKFEC-SVSGDGLHFATGSYSNLLRIF 331
++ C V+ DG+ ATGS+ + L+I+
Sbjct: 313 --NRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 33 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 84
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 85 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 135 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 175
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 176 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 228
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 229 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 265
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 37 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 88
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 89 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 139 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 179
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 180 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 232
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 233 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 269
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 89
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 90 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 140 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 180
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 181 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 233
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 234 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 28 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 79
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 80 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 130 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 170
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 171 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 223
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 224 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 260
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 38 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 89
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 90 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 140 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 180
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 181 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 233
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 234 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 270
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 17 FQSHEPEFDYLKSLEI-EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 67
++ ++ +F+ + +LE E ++ V W AP+G++ + DK++ +W+V ++
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAW--APSGNLLATCSRDKSVWVWEVDEE 137
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 83
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 84 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 134 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 174
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 175 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 227
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 228 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 264
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 32 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 83
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 84 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 134 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 174
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 175 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 227
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 228 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 264
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 329
++LWD+R+ S V T+ HE D+ N+ F DG F TGS R
Sbjct: 230 VRLWDLRITSRAVRTYHGHEG------DI-NSVKFFP--------DGQRFGTGSDDGTCR 274
Query: 330 IFSHGVGSAGGI-TVEAGKNENRKPILQAA 358
+F G + E +N+N PI+ +
Sbjct: 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSV 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 86
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 87 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + +C + P++ D ++ V + + +L+ SS G R
Sbjct: 137 WDVK-TGKCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 177
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 178 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 230
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS NL+ I+
Sbjct: 231 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNLVYIW 267
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 41/148 (27%)
Query: 201 NLLAYSSSRGFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 256
N LA +S V+L D++Q + HSAR+ GS S+ + I++S S +
Sbjct: 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV--------GSLSWNSYILSSGS--RSG 209
Query: 257 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 316
+ H D+R+ VAT H ++C L + DG
Sbjct: 210 HIHHH------------DVRVAEHHVATLSGHSQ---EVCGL------------RWAPDG 242
Query: 317 LHFATGSYSNLLRIFSHGVGSAGGITVE 344
H A+G NL+ ++ G G + ++
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQ 270
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 41/148 (27%)
Query: 201 NLLAYSSSRGFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 256
N LA +S V+L D++Q + HSAR+ GS S+ + I++S S +
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV--------GSLSWNSYILSSGS--RSG 220
Query: 257 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 316
+ H D+R+ VAT H ++C L + DG
Sbjct: 221 HIHHH------------DVRVAEHHVATLSGHSQ---EVCGL------------RWAPDG 253
Query: 317 LHFATGSYSNLLRIFSHGVGSAGGITVE 344
H A+G NL+ ++ G G + ++
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWVPLQ 281
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 65
+ + + W APN S + + DKT+K W R
Sbjct: 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 41/148 (27%)
Query: 201 NLLAYSSSRGFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 256
N LA +S V+L D++Q + HSAR+ GS S+ + I++S S +
Sbjct: 80 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV--------GSLSWNSYILSSGS--RSG 129
Query: 257 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 316
+ H D+R+ VAT H ++C L + DG
Sbjct: 130 HIHHH------------DVRVAEHHVATLSGHSQ---EVCGL------------RWAPDG 162
Query: 317 LHFATGSYSNLLRIFSHGVGSAGGITVE 344
H A+G NL+ ++ G G + ++
Sbjct: 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQ 190
>pdb|3LEC|A Chain A, The Crystal Structure Of A Protein In The Nadb-Rossmann
Superfamily From Streptococcus Agalactiae To 1.8a
Length = 230
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 40 RWCAAPNGSMF---ILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMN 95
+W AA + + IL+ NDK ++ V+ KE+ PF+ S NT + ++ + N
Sbjct: 134 KWLAANDFEIVAEDILTENDKRYEILVVKHGHXNLTAKELRFGPFLLSNNTTVFKEKWQN 193
Query: 96 EHNPPSFA 103
E N +FA
Sbjct: 194 ELNKLTFA 201
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 45 PNGSMFILSTNDKTIKLWKVR 65
PNG + ++ DKTIK+W+V+
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQ 222
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 86
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 87 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + C + P++ D ++ V + + +L+ SS G R
Sbjct: 137 WDVK-TGMCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 177
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 178 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC-L 230
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS N++ I+
Sbjct: 231 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNMVYIW 267
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 115/289 (39%), Gaps = 57/289 (19%)
Query: 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103
+PNG S+ DK IK+W D K +K +S +++ + ++ N A
Sbjct: 35 SPNGEWLASSSADKLIKIWGAYDGKFEKT--------ISGHKLGISDVAWSSDSNLLVSA 86
Query: 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 163
+++ KI +V + +C K ++ + D + +
Sbjct: 87 -------SDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223
W+++ + C + P++ D ++ V + + +L+ SS G R
Sbjct: 137 WDVK-TGMCLKTL---PAHSDPVSAVHFNRDG-----SLIVSSSYDGLCR---------- 177
Query: 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPV 282
+ D A K+ + +S +KF+ +G+++L+ N LKLWD +
Sbjct: 178 ------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-L 230
Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331
T+ H++ K C IF F SV+G G +GS N++ I+
Sbjct: 231 KTYTGHKN--EKYC-------IFANF--SVTG-GKWIVSGSEDNMVYIW 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,529,126
Number of Sequences: 62578
Number of extensions: 486530
Number of successful extensions: 1329
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 134
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)