Query 014644
Match_columns 421
No_of_seqs 450 out of 1811
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.8E-50 6E-55 334.6 26.8 326 25-420 106-479 (480)
2 KOG1354 Serine/threonine prote 100.0 9.2E-47 2E-51 309.8 19.8 373 9-421 60-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 9E-45 2E-49 305.5 23.7 280 30-421 172-459 (459)
4 KOG0271 Notchless-like WD40 re 100.0 9.6E-41 2.1E-45 277.9 21.8 294 85-421 110-438 (480)
5 KOG0286 G-protein beta subunit 100.0 1.9E-38 4.2E-43 255.4 28.2 280 30-420 52-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 5E-40 1.1E-44 277.0 16.1 241 30-381 214-458 (459)
7 KOG0279 G protein beta subunit 100.0 1.1E-37 2.4E-42 249.5 27.7 285 30-421 12-312 (315)
8 KOG0318 WD40 repeat stress pro 100.0 2.4E-36 5.2E-41 261.5 34.9 372 30-421 56-559 (603)
9 KOG0315 G-protein beta subunit 100.0 6E-37 1.3E-41 241.4 26.9 290 47-402 10-309 (311)
10 KOG0284 Polyadenylation factor 100.0 1.3E-38 2.8E-43 267.3 17.7 277 32-420 95-378 (464)
11 KOG0263 Transcription initiati 100.0 2.8E-36 6.2E-41 273.4 23.2 266 33-380 378-646 (707)
12 KOG0645 WD40 repeat protein [G 100.0 1.4E-34 3E-39 230.8 28.5 283 28-420 9-309 (312)
13 KOG0265 U5 snRNP-specific prot 100.0 4.8E-35 1E-39 236.7 25.5 279 29-418 43-334 (338)
14 KOG0273 Beta-transducin family 100.0 8E-35 1.7E-39 248.8 27.6 332 28-420 173-521 (524)
15 KOG0319 WD40-repeat-containing 100.0 3E-35 6.5E-40 264.3 25.6 343 31-419 103-616 (775)
16 COG5170 CDC55 Serine/threonine 100.0 2.3E-36 5.1E-41 245.8 15.7 393 6-421 58-459 (460)
17 KOG0279 G protein beta subunit 100.0 6.8E-34 1.5E-38 227.9 25.4 250 30-334 60-313 (315)
18 KOG0291 WD40-repeat-containing 100.0 4E-33 8.6E-38 251.2 33.0 318 34-421 266-611 (893)
19 KOG0266 WD40 repeat-containing 100.0 8.7E-34 1.9E-38 263.4 29.1 284 32-420 158-452 (456)
20 KOG0276 Vesicle coat complex C 100.0 6.9E-34 1.5E-38 251.0 26.5 321 31-421 11-379 (794)
21 KOG0291 WD40-repeat-containing 100.0 6.7E-33 1.5E-37 249.8 33.0 335 29-421 141-549 (893)
22 KOG0316 Conserved WD40 repeat- 100.0 8.2E-34 1.8E-38 222.0 23.3 277 31-420 15-297 (307)
23 KOG0295 WD40 repeat-containing 100.0 2E-34 4.3E-39 238.9 20.9 280 29-420 104-404 (406)
24 KOG0263 Transcription initiati 100.0 7.7E-35 1.7E-39 264.1 19.3 250 128-421 369-648 (707)
25 KOG0315 G-protein beta subunit 100.0 2E-33 4.4E-38 221.5 24.1 264 103-420 11-286 (311)
26 KOG0318 WD40 repeat stress pro 100.0 9.6E-32 2.1E-36 233.1 33.9 352 22-421 178-601 (603)
27 KOG0282 mRNA splicing factor [ 100.0 1.6E-33 3.4E-38 241.8 20.0 281 30-420 211-503 (503)
28 KOG0281 Beta-TrCP (transducin 100.0 6.8E-34 1.5E-38 234.5 16.8 265 33-420 197-475 (499)
29 cd00200 WD40 WD40 domain, foun 100.0 1.2E-31 2.5E-36 236.8 32.2 277 31-420 7-289 (289)
30 KOG0285 Pleiotropic regulator 100.0 2.1E-32 4.5E-37 226.5 24.7 244 29-336 147-391 (460)
31 PLN00181 protein SPA1-RELATED; 100.0 2.1E-31 4.5E-36 265.6 34.7 284 31-420 481-791 (793)
32 KOG0293 WD40 repeat-containing 100.0 1.1E-32 2.3E-37 232.2 21.2 285 30-382 221-512 (519)
33 KOG0286 G-protein beta subunit 100.0 9.4E-32 2E-36 217.0 25.4 249 128-421 46-302 (343)
34 KOG0284 Polyadenylation factor 100.0 2.6E-33 5.6E-38 235.6 16.2 257 8-380 117-377 (464)
35 KOG0296 Angio-associated migra 100.0 4.4E-31 9.5E-36 219.3 28.3 330 30-420 61-396 (399)
36 KOG0273 Beta-transducin family 100.0 3E-32 6.5E-37 233.2 22.0 240 138-421 235-481 (524)
37 KOG0275 Conserved WD40 repeat- 100.0 4.4E-32 9.5E-37 222.0 18.5 294 30-381 210-507 (508)
38 KOG0295 WD40 repeat-containing 100.0 8.5E-32 1.9E-36 223.3 19.9 238 31-380 148-403 (406)
39 KOG0266 WD40 repeat-containing 100.0 4.9E-31 1.1E-35 245.0 26.5 247 30-381 200-452 (456)
40 KOG0283 WD40 repeat-containing 100.0 3.7E-31 7.9E-36 242.3 24.3 273 31-346 265-543 (712)
41 KOG1446 Histone H3 (Lys4) meth 100.0 2E-29 4.3E-34 206.2 30.7 270 33-358 14-286 (311)
42 KOG0285 Pleiotropic regulator 100.0 7.3E-31 1.6E-35 217.4 22.3 242 128-420 142-387 (460)
43 KOG0313 Microtubule binding pr 100.0 1.2E-30 2.6E-35 217.6 23.0 297 27-420 99-416 (423)
44 KOG0306 WD40-repeat-containing 100.0 8.3E-30 1.8E-34 229.8 28.1 340 29-420 316-662 (888)
45 KOG1407 WD40 repeat protein [F 100.0 6.8E-30 1.5E-34 203.1 23.5 273 28-413 15-292 (313)
46 KOG0292 Vesicle coat complex C 100.0 4.6E-30 1E-34 235.3 25.4 294 33-380 9-318 (1202)
47 KOG0319 WD40-repeat-containing 100.0 1.5E-30 3.3E-35 234.2 21.9 291 30-380 320-616 (775)
48 KOG0276 Vesicle coat complex C 100.0 3.8E-30 8.3E-35 227.5 23.5 274 92-420 15-296 (794)
49 KOG0643 Translation initiation 100.0 2.8E-29 6.1E-34 200.2 26.0 286 27-419 4-314 (327)
50 KOG0277 Peroxisomal targeting 100.0 1.2E-30 2.5E-35 206.6 16.5 253 22-381 49-307 (311)
51 KOG0278 Serine/threonine kinas 100.0 6E-31 1.3E-35 207.8 14.5 284 26-380 7-294 (334)
52 KOG0265 U5 snRNP-specific prot 100.0 5.5E-30 1.2E-34 207.5 20.1 242 129-421 39-295 (338)
53 KOG0293 WD40 repeat-containing 100.0 9.9E-30 2.2E-34 214.4 20.5 278 93-420 227-511 (519)
54 KOG0645 WD40 repeat protein [G 100.0 1.3E-28 2.8E-33 196.9 25.3 244 128-420 5-259 (312)
55 KOG0277 Peroxisomal targeting 100.0 1.7E-29 3.8E-34 200.0 19.1 259 114-420 38-307 (311)
56 KOG0772 Uncharacterized conser 100.0 1.2E-29 2.5E-34 219.7 18.5 296 30-380 164-484 (641)
57 KOG0973 Histone transcription 100.0 5.4E-29 1.2E-33 233.9 24.2 305 31-419 10-352 (942)
58 PTZ00421 coronin; Provisional 100.0 4.6E-28 1E-32 224.2 29.6 232 30-358 72-314 (493)
59 KOG0640 mRNA cleavage stimulat 100.0 1.1E-28 2.4E-33 200.9 21.8 307 23-420 102-424 (430)
60 KOG0296 Angio-associated migra 100.0 7E-28 1.5E-32 200.3 24.1 282 88-421 62-355 (399)
61 KOG0292 Vesicle coat complex C 100.0 1.4E-28 3.1E-33 225.6 20.1 238 135-421 6-279 (1202)
62 KOG0264 Nucleosome remodeling 100.0 3.8E-28 8.2E-33 207.6 20.1 286 19-420 110-402 (422)
63 KOG0641 WD40 repeat protein [G 100.0 1.3E-26 2.8E-31 180.8 26.7 315 20-380 19-346 (350)
64 PTZ00420 coronin; Provisional 100.0 1.2E-26 2.6E-31 215.8 31.7 254 115-406 55-319 (568)
65 KOG0281 Beta-TrCP (transducin 100.0 2.7E-29 5.8E-34 207.5 12.1 230 30-380 234-474 (499)
66 KOG0310 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 205.7 23.0 275 33-418 26-304 (487)
67 KOG0306 WD40-repeat-containing 100.0 3E-27 6.5E-32 213.5 24.6 287 27-380 367-661 (888)
68 KOG0288 WD40 repeat protein Ti 100.0 1.2E-28 2.7E-33 207.8 14.5 280 31-380 173-458 (459)
69 PTZ00421 coronin; Provisional 100.0 1.9E-26 4.2E-31 213.5 30.2 231 135-405 72-315 (493)
70 cd00200 WD40 WD40 domain, foun 100.0 1.3E-26 2.8E-31 204.5 27.9 239 132-421 4-248 (289)
71 KOG0282 mRNA splicing factor [ 100.0 1.1E-28 2.4E-33 212.2 13.6 243 128-420 205-460 (503)
72 KOG0647 mRNA export protein (c 100.0 7.8E-27 1.7E-31 189.5 23.6 276 26-412 20-312 (347)
73 KOG0299 U3 snoRNP-associated p 100.0 6.7E-27 1.5E-31 200.1 24.0 273 23-336 132-412 (479)
74 KOG1332 Vesicle coat complex C 100.0 1.3E-27 2.8E-32 188.4 17.8 248 134-420 7-284 (299)
75 KOG0316 Conserved WD40 repeat- 100.0 2.2E-27 4.9E-32 186.1 18.7 222 30-358 56-281 (307)
76 PLN00181 protein SPA1-RELATED; 100.0 1.4E-26 2.9E-31 231.2 29.4 243 135-420 480-736 (793)
77 KOG0313 Microtubule binding pr 100.0 4.2E-27 9E-32 196.7 20.3 252 29-380 140-415 (423)
78 KOG0305 Anaphase promoting com 100.0 2E-26 4.4E-31 205.9 26.1 234 138-421 217-460 (484)
79 PTZ00420 coronin; Provisional 100.0 9.4E-26 2E-30 209.9 29.6 234 30-359 71-318 (568)
80 KOG1407 WD40 repeat protein [F 100.0 8.2E-27 1.8E-31 185.6 18.8 235 131-415 14-253 (313)
81 KOG0274 Cdc4 and related F-box 100.0 2.6E-26 5.7E-31 212.8 25.3 269 32-421 207-481 (537)
82 KOG0268 Sof1-like rRNA process 100.0 1.3E-27 2.8E-32 198.6 12.8 276 30-380 63-342 (433)
83 KOG0300 WD40 repeat-containing 99.9 2.3E-26 5E-31 188.1 18.9 302 14-420 128-474 (481)
84 KOG0308 Conserved WD40 repeat- 99.9 8.5E-27 1.8E-31 207.4 17.6 241 44-377 34-278 (735)
85 KOG0289 mRNA splicing factor [ 99.9 1E-25 2.3E-30 191.4 23.1 276 34-419 220-503 (506)
86 KOG0305 Anaphase promoting com 99.9 1.1E-25 2.3E-30 201.3 22.7 241 33-336 217-463 (484)
87 KOG2096 WD40 repeat protein [G 99.9 2.4E-25 5.2E-30 182.2 22.8 290 30-419 83-399 (420)
88 KOG0772 Uncharacterized conser 99.9 8.4E-26 1.8E-30 195.9 21.3 298 89-420 166-485 (641)
89 KOG1036 Mitotic spindle checkp 99.9 8E-25 1.7E-29 178.5 25.4 264 33-412 13-293 (323)
90 KOG0278 Serine/threonine kinas 99.9 2.3E-26 5.1E-31 181.9 15.6 205 25-336 92-299 (334)
91 KOG1446 Histone H3 (Lys4) meth 99.9 2.9E-24 6.4E-29 176.0 27.2 275 90-419 14-300 (311)
92 KOG0302 Ribosome Assembly prot 99.9 4.5E-25 9.8E-30 184.4 21.7 230 27-336 145-380 (440)
93 KOG1408 WD40 repeat protein [F 99.9 1.1E-24 2.4E-29 196.0 25.5 336 37-421 328-712 (1080)
94 KOG1063 RNA polymerase II elon 99.9 8.2E-25 1.8E-29 196.2 23.0 378 30-420 51-646 (764)
95 KOG0643 Translation initiation 99.9 1.2E-24 2.6E-29 173.9 21.3 229 135-412 7-250 (327)
96 KOG0640 mRNA cleavage stimulat 99.9 2.6E-25 5.7E-30 181.3 17.1 249 30-380 169-423 (430)
97 KOG0294 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 176.7 22.1 234 31-380 41-278 (362)
98 KOG0283 WD40 repeat-containing 99.9 4E-25 8.8E-30 202.9 20.3 208 30-335 366-577 (712)
99 KOG0301 Phospholipase A2-activ 99.9 9.1E-25 2E-29 196.0 22.1 270 31-420 12-286 (745)
100 KOG0639 Transducin-like enhanc 99.9 8.5E-25 1.8E-29 189.2 20.5 289 25-420 411-702 (705)
101 KOG0973 Histone transcription 99.9 9.5E-25 2.1E-29 205.5 22.3 263 30-380 66-352 (942)
102 KOG2048 WD40 repeat protein [G 99.9 4.4E-23 9.5E-28 184.8 31.0 325 33-420 25-409 (691)
103 KOG0274 Cdc4 and related F-box 99.9 1.8E-24 3.9E-29 200.7 22.3 230 29-380 245-479 (537)
104 KOG2445 Nuclear pore complex c 99.9 8.4E-24 1.8E-28 172.4 23.1 281 30-421 10-317 (361)
105 KOG1063 RNA polymerase II elon 99.9 1.5E-23 3.4E-28 188.1 26.7 349 30-420 264-697 (764)
106 KOG0275 Conserved WD40 repeat- 99.9 2.5E-25 5.4E-30 182.6 14.1 279 91-420 214-507 (508)
107 KOG1273 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 171.3 24.0 283 30-421 21-321 (405)
108 KOG1332 Vesicle coat complex C 99.9 9E-25 1.9E-29 172.4 16.1 249 30-380 8-283 (299)
109 KOG0269 WD40 repeat-containing 99.9 7.9E-25 1.7E-29 198.6 17.5 231 140-415 89-332 (839)
110 KOG0264 Nucleosome remodeling 99.9 2.5E-24 5.4E-29 184.4 18.6 215 28-335 172-405 (422)
111 KOG0650 WD40 repeat nucleolar 99.9 4.5E-24 9.6E-29 188.5 20.5 308 29-419 396-732 (733)
112 KOG1539 WD repeat protein [Gen 99.9 1.5E-22 3.3E-27 185.4 31.2 333 36-420 162-646 (910)
113 KOG0268 Sof1-like rRNA process 99.9 9.9E-25 2.2E-29 181.5 14.0 253 131-421 60-344 (433)
114 KOG0289 mRNA splicing factor [ 99.9 2.7E-23 5.9E-28 176.8 22.9 242 30-380 258-503 (506)
115 KOG0300 WD40 repeat-containing 99.9 3.9E-24 8.5E-29 175.1 17.1 260 127-420 138-426 (481)
116 KOG2919 Guanine nucleotide-bin 99.9 1E-23 2.2E-28 173.0 19.5 294 36-377 52-363 (406)
117 KOG0641 WD40 repeat protein [G 99.9 3.4E-22 7.5E-27 156.2 26.0 262 23-334 79-349 (350)
118 KOG0269 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 193.1 18.5 239 35-377 89-333 (839)
119 KOG2055 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 175.4 24.0 280 33-420 213-510 (514)
120 KOG4283 Transcription-coupled 99.9 4E-23 8.6E-28 167.5 21.0 308 31-420 41-363 (397)
121 KOG0310 Conserved WD40 repeat- 99.9 1.8E-23 3.9E-28 180.5 20.1 233 138-420 26-266 (487)
122 KOG1274 WD40 repeat protein [G 99.9 3.3E-22 7.2E-27 185.1 28.0 250 30-335 10-263 (933)
123 KOG0288 WD40 repeat protein Ti 99.9 7.3E-24 1.6E-28 179.2 14.3 252 113-420 196-459 (459)
124 KOG0321 WD40 repeat-containing 99.9 2E-22 4.3E-27 179.4 23.1 312 37-421 53-390 (720)
125 KOG2096 WD40 repeat protein [G 99.9 2.6E-22 5.6E-27 164.6 21.7 253 135-421 83-359 (420)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-21 8.3E-26 171.4 30.5 228 141-421 33-278 (300)
127 KOG2106 Uncharacterized conser 99.9 3.4E-21 7.3E-26 167.2 28.5 332 32-419 153-518 (626)
128 KOG0267 Microtubule severing p 99.9 3.2E-24 7E-29 193.3 10.0 233 135-417 25-262 (825)
129 KOG0267 Microtubule severing p 99.9 2.9E-24 6.3E-29 193.6 8.6 193 135-377 67-261 (825)
130 KOG2106 Uncharacterized conser 99.9 1.1E-20 2.5E-25 163.9 30.1 315 34-420 247-624 (626)
131 KOG1034 Transcriptional repres 99.9 7.1E-22 1.5E-26 162.6 21.2 327 23-420 26-381 (385)
132 KOG4283 Transcription-coupled 99.9 3.3E-22 7.2E-27 162.3 18.7 220 135-420 40-274 (397)
133 KOG0647 mRNA export protein (c 99.9 8.6E-22 1.9E-26 160.4 20.1 235 135-420 24-279 (347)
134 KOG0646 WD40 repeat protein [G 99.9 7E-22 1.5E-26 169.9 18.4 234 32-360 80-332 (476)
135 KOG1445 Tumor-specific antigen 99.9 3.2E-22 6.9E-27 178.1 16.8 142 249-413 629-784 (1012)
136 KOG0308 Conserved WD40 repeat- 99.9 9.1E-22 2E-26 175.6 18.8 235 26-356 65-306 (735)
137 KOG0294 WD40 repeat-containing 99.9 4E-21 8.8E-26 157.4 21.1 237 128-420 34-279 (362)
138 KOG1009 Chromatin assembly com 99.9 2.2E-21 4.9E-26 164.0 20.1 307 33-416 13-365 (434)
139 KOG1408 WD40 repeat protein [F 99.9 1.3E-21 2.9E-26 176.4 19.5 305 30-380 366-710 (1080)
140 KOG0299 U3 snoRNP-associated p 99.9 2.2E-21 4.7E-26 166.5 19.9 245 130-420 135-408 (479)
141 KOG0646 WD40 repeat protein [G 99.9 6.2E-21 1.3E-25 164.1 22.1 249 115-408 62-334 (476)
142 KOG0301 Phospholipase A2-activ 99.9 2.4E-21 5.2E-26 174.2 20.3 228 31-380 55-285 (745)
143 KOG1539 WD repeat protein [Gen 99.9 5.1E-20 1.1E-24 169.0 27.3 310 26-380 236-645 (910)
144 KOG1007 WD repeat protein TSSC 99.9 1.5E-20 3.3E-25 152.2 20.9 304 55-418 38-357 (370)
145 KOG4328 WD40 protein [Function 99.9 2.1E-20 4.6E-25 160.4 22.9 260 31-336 184-452 (498)
146 KOG0270 WD40 repeat-containing 99.9 3.2E-20 6.8E-25 158.8 23.5 231 100-380 190-446 (463)
147 KOG0321 WD40 repeat-containing 99.9 8.4E-21 1.8E-25 169.2 19.6 264 27-380 94-388 (720)
148 KOG1036 Mitotic spindle checkp 99.9 5.8E-20 1.3E-24 150.3 22.9 244 25-374 46-294 (323)
149 KOG0639 Transducin-like enhanc 99.9 1.9E-21 4.1E-26 168.7 14.6 237 136-420 417-661 (705)
150 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.6E-25 161.0 19.4 245 135-420 183-448 (498)
151 KOG0307 Vesicle coat complex C 99.9 2.1E-21 4.5E-26 184.1 14.8 256 27-380 58-324 (1049)
152 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-20 1.5E-24 158.9 22.4 264 35-359 36-305 (673)
153 KOG0303 Actin-binding protein 99.9 4.4E-20 9.5E-25 155.7 18.6 234 30-358 78-320 (472)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-18 3.8E-23 154.2 30.2 268 28-356 25-299 (300)
155 KOG1274 WD40 repeat protein [G 99.9 2.3E-19 4.9E-24 166.6 24.3 236 135-421 10-261 (933)
156 KOG0270 WD40 repeat-containing 99.9 9E-20 2E-24 156.1 19.4 234 149-421 191-448 (463)
157 KOG0290 Conserved WD40 repeat- 99.9 1.5E-19 3.3E-24 146.6 19.7 260 27-419 90-362 (364)
158 KOG4227 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 152.4 20.2 300 30-380 53-384 (609)
159 KOG2055 WD40 repeat protein [G 99.8 1.2E-19 2.5E-24 156.1 19.4 237 138-418 213-463 (514)
160 KOG0302 Ribosome Assembly prot 99.8 4.9E-20 1.1E-24 154.5 16.4 226 10-328 187-433 (440)
161 KOG1538 Uncharacterized conser 99.8 2.1E-19 4.5E-24 161.3 21.3 268 35-420 14-291 (1081)
162 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-19 4.5E-24 155.9 19.7 285 55-405 10-305 (673)
163 KOG1273 WD40 repeat protein [G 99.8 1.5E-19 3.3E-24 148.3 17.8 233 141-420 26-278 (405)
164 KOG2919 Guanine nucleotide-bin 99.8 6.3E-19 1.4E-23 145.2 21.1 242 138-418 104-365 (406)
165 KOG0307 Vesicle coat complex C 99.8 4.4E-20 9.5E-25 175.3 13.8 245 137-420 63-325 (1049)
166 KOG1524 WD40 repeat-containing 99.8 9.3E-19 2E-23 153.3 20.0 205 152-419 77-282 (737)
167 KOG1188 WD40 repeat protein [G 99.8 8.9E-19 1.9E-23 145.3 18.3 286 48-381 41-344 (376)
168 KOG2048 WD40 repeat protein [G 99.8 5E-18 1.1E-22 152.7 24.4 234 135-419 22-272 (691)
169 KOG0650 WD40 repeat nucleolar 99.8 9.2E-19 2E-23 155.2 18.1 258 128-420 391-678 (733)
170 KOG0642 Cell-cycle nuclear pro 99.8 7.3E-19 1.6E-23 155.0 16.6 235 30-336 291-563 (577)
171 PRK11028 6-phosphogluconolacto 99.8 1.6E-16 3.4E-21 143.3 29.6 238 139-420 35-302 (330)
172 KOG2445 Nuclear pore complex c 99.8 1.4E-17 3E-22 136.4 20.1 232 133-383 8-256 (361)
173 KOG1007 WD repeat protein TSSC 99.8 6.2E-18 1.3E-22 137.2 17.8 219 32-334 122-361 (370)
174 KOG1538 Uncharacterized conser 99.8 7.4E-18 1.6E-22 151.4 18.6 239 30-335 50-294 (1081)
175 COG2319 FOG: WD40 repeat [Gene 99.8 3.5E-15 7.6E-20 139.5 37.7 324 29-420 61-398 (466)
176 KOG1963 WD40 repeat protein [G 99.8 4.9E-16 1.1E-20 144.3 27.2 308 29-421 201-537 (792)
177 KOG1034 Transcriptional repres 99.8 4.6E-18 9.9E-23 140.4 11.9 221 30-334 132-383 (385)
178 KOG0303 Actin-binding protein 99.8 1.3E-16 2.8E-21 135.0 20.2 205 181-420 75-292 (472)
179 KOG0644 Uncharacterized conser 99.8 2.3E-18 5.1E-23 158.2 10.3 273 29-420 186-466 (1113)
180 KOG1517 Guanine nucleotide bin 99.8 1.2E-16 2.5E-21 150.8 20.6 265 33-336 1109-1383(1387)
181 KOG1188 WD40 repeat protein [G 99.7 9.6E-17 2.1E-21 133.4 16.4 266 31-335 68-347 (376)
182 KOG0649 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 120.2 22.5 292 35-419 12-313 (325)
183 KOG4227 WD40 repeat protein [G 99.7 2.7E-16 6E-21 133.0 18.8 288 91-420 57-385 (609)
184 KOG1445 Tumor-specific antigen 99.7 4.3E-17 9.3E-22 145.8 14.2 226 32-350 626-860 (1012)
185 PRK01742 tolB translocation pr 99.7 3E-16 6.6E-21 145.8 20.3 217 31-358 201-426 (429)
186 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 121.1 28.7 241 33-336 5-250 (391)
187 KOG1009 Chromatin assembly com 99.7 3.1E-16 6.8E-21 133.2 16.8 291 22-377 53-365 (434)
188 PRK01742 tolB translocation pr 99.7 7.1E-16 1.5E-20 143.3 20.9 214 135-405 200-427 (429)
189 KOG1587 Cytoplasmic dynein int 99.7 3.3E-15 7.2E-20 138.2 24.4 273 115-420 223-514 (555)
190 KOG1517 Guanine nucleotide bin 99.7 2.4E-15 5.1E-20 142.2 23.0 244 139-420 1110-1379(1387)
191 PRK11028 6-phosphogluconolacto 99.7 3.3E-14 7.2E-19 128.2 29.4 271 25-335 26-305 (330)
192 COG2319 FOG: WD40 repeat [Gene 99.7 2.7E-13 5.8E-18 126.7 36.5 318 34-420 110-440 (466)
193 KOG1523 Actin-related protein 99.7 1.5E-15 3.2E-20 125.3 17.5 214 137-418 9-232 (361)
194 KOG1272 WD40-repeat-containing 99.7 1.4E-16 3.1E-21 137.5 12.0 262 37-416 133-402 (545)
195 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-16 8.1E-21 138.1 14.8 251 135-420 291-559 (577)
196 KOG1240 Protein kinase contain 99.7 1.2E-14 2.5E-19 139.6 25.2 231 30-346 1045-1284(1431)
197 KOG0290 Conserved WD40 repeat- 99.7 1.4E-15 3E-20 123.9 16.3 215 135-383 93-318 (364)
198 KOG1310 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 134.4 17.1 237 30-343 47-312 (758)
199 KOG1524 WD40 repeat-containing 99.7 2.5E-15 5.4E-20 132.2 17.9 181 31-330 102-282 (737)
200 KOG1523 Actin-related protein 99.7 4.9E-15 1.1E-19 122.4 18.5 244 33-358 10-260 (361)
201 KOG1587 Cytoplasmic dynein int 99.7 7.2E-15 1.6E-19 136.0 21.8 267 30-383 239-516 (555)
202 KOG2111 Uncharacterized conser 99.7 3.2E-13 7E-18 111.7 28.5 180 115-336 76-258 (346)
203 KOG1334 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 132.8 14.8 304 31-382 140-465 (559)
204 KOG0322 G-protein beta subunit 99.7 1.2E-15 2.6E-20 122.6 13.6 289 31-381 12-321 (323)
205 KOG1310 WD40 repeat protein [G 99.7 2E-15 4.3E-20 133.2 16.2 183 131-334 44-231 (758)
206 KOG1963 WD40 repeat protein [G 99.7 6.5E-14 1.4E-18 130.4 26.5 266 31-336 55-324 (792)
207 KOG2139 WD40 repeat protein [G 99.7 2.6E-14 5.6E-19 120.0 21.2 259 34-336 99-385 (445)
208 KOG0771 Prolactin regulatory e 99.6 8.4E-15 1.8E-19 125.4 15.1 200 37-336 148-356 (398)
209 PRK03629 tolB translocation pr 99.6 1.6E-13 3.5E-18 127.4 25.0 170 141-358 245-428 (429)
210 KOG0771 Prolactin regulatory e 99.6 4.3E-15 9.4E-20 127.1 13.1 176 142-358 148-335 (398)
211 KOG4497 Uncharacterized conser 99.6 2.5E-14 5.5E-19 118.6 16.9 224 39-333 14-239 (447)
212 KOG1354 Serine/threonine prote 99.6 1.6E-14 3.6E-19 120.4 15.3 293 33-420 25-357 (433)
213 PRK03629 tolB translocation pr 99.6 1.1E-13 2.3E-18 128.5 22.6 230 115-404 180-428 (429)
214 KOG0649 WD40 repeat protein [G 99.6 1.4E-13 3E-18 109.6 18.8 215 29-334 58-274 (325)
215 KOG2110 Uncharacterized conser 99.6 1.3E-12 2.8E-17 110.3 24.9 190 141-420 49-246 (391)
216 PRK02889 tolB translocation pr 99.6 2.2E-13 4.8E-18 126.5 22.7 217 135-404 192-425 (427)
217 KOG0322 G-protein beta subunit 99.6 5.9E-14 1.3E-18 113.0 16.1 168 136-333 148-322 (323)
218 PRK04922 tolB translocation pr 99.6 2.2E-13 4.7E-18 127.0 22.4 229 115-403 185-432 (433)
219 PF08662 eIF2A: Eukaryotic tra 99.6 1E-13 2.2E-18 113.5 17.3 147 143-334 10-179 (194)
220 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 123.6 23.3 173 140-358 241-425 (427)
221 PRK05137 tolB translocation pr 99.6 1.5E-12 3.2E-17 121.6 24.5 215 135-404 198-433 (435)
222 PRK04922 tolB translocation pr 99.6 1E-12 2.2E-17 122.6 23.2 169 141-357 250-432 (433)
223 KOG4497 Uncharacterized conser 99.5 6.7E-13 1.5E-17 110.3 17.9 244 33-334 91-391 (447)
224 PF08662 eIF2A: Eukaryotic tra 99.5 1E-12 2.2E-17 107.6 18.6 116 137-285 58-186 (194)
225 KOG2111 Uncharacterized conser 99.5 6.8E-12 1.5E-16 104.0 23.1 138 115-277 114-257 (346)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 2.2E-13 4.8E-18 120.1 15.2 165 33-257 219-384 (636)
227 KOG2139 WD40 repeat protein [G 99.5 1E-12 2.3E-17 110.5 18.2 167 138-334 98-268 (445)
228 KOG3881 Uncharacterized conser 99.5 2.1E-12 4.5E-17 109.8 20.1 230 136-406 103-344 (412)
229 KOG0644 Uncharacterized conser 99.5 1.1E-14 2.3E-19 134.6 6.9 238 128-420 181-424 (1113)
230 KOG2321 WD40 repeat protein [G 99.5 7.4E-12 1.6E-16 111.6 24.0 289 25-415 43-335 (703)
231 PRK05137 tolB translocation pr 99.5 3.7E-12 8E-17 119.0 23.7 215 31-358 199-433 (435)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 1.4E-13 3E-18 121.4 12.6 191 147-358 182-385 (636)
233 PF10282 Lactonase: Lactonase, 99.5 7.1E-10 1.5E-14 100.2 35.9 251 50-335 2-276 (345)
234 COG2706 3-carboxymuconate cycl 99.5 1E-09 2.2E-14 93.3 31.1 233 17-336 23-276 (346)
235 KOG1334 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 114.0 13.1 296 89-420 141-464 (559)
236 TIGR02800 propeller_TolB tol-p 99.4 4E-11 8.7E-16 112.1 24.1 188 135-377 186-387 (417)
237 KOG2041 WD40 repeat protein [G 99.4 9.2E-12 2E-16 113.8 17.8 291 33-419 14-334 (1189)
238 PRK00178 tolB translocation pr 99.4 8.6E-11 1.9E-15 110.0 24.5 170 141-358 245-428 (430)
239 KOG3881 Uncharacterized conser 99.4 1.8E-11 3.9E-16 104.2 17.5 164 140-336 150-322 (412)
240 KOG2315 Predicted translation 99.4 2.9E-10 6.3E-15 101.4 25.5 252 34-336 35-346 (566)
241 TIGR02800 propeller_TolB tol-p 99.4 8.7E-11 1.9E-15 109.8 23.9 151 138-334 233-397 (417)
242 PRK04792 tolB translocation pr 99.4 6.1E-11 1.3E-15 110.6 22.4 215 135-404 214-447 (448)
243 KOG1272 WD40-repeat-containing 99.4 4.5E-13 9.7E-18 116.2 7.1 188 189-421 131-322 (545)
244 PRK04792 tolB translocation pr 99.4 8.2E-11 1.8E-15 109.8 22.7 168 142-358 265-447 (448)
245 COG5170 CDC55 Serine/threonine 99.4 3.6E-12 7.8E-17 105.3 11.9 254 30-347 23-322 (460)
246 PRK00178 tolB translocation pr 99.4 1.2E-10 2.5E-15 109.1 23.7 215 135-404 195-428 (430)
247 PF02239 Cytochrom_D1: Cytochr 99.4 7.4E-10 1.6E-14 100.0 26.0 299 26-421 28-346 (369)
248 KOG2321 WD40 repeat protein [G 99.4 2E-10 4.3E-15 102.6 20.9 274 4-336 58-345 (703)
249 PRK01029 tolB translocation pr 99.4 4E-10 8.7E-15 104.4 23.7 222 136-405 182-426 (428)
250 PF10282 Lactonase: Lactonase, 99.3 1.4E-08 3E-13 91.9 31.7 272 21-335 24-323 (345)
251 COG2706 3-carboxymuconate cycl 99.3 6E-09 1.3E-13 88.7 26.9 204 113-344 15-231 (346)
252 KOG0974 WD-repeat protein WDR6 99.3 9.2E-11 2E-15 111.7 16.0 191 191-420 91-286 (967)
253 PRK01029 tolB translocation pr 99.3 1.8E-09 4E-14 100.0 24.0 178 138-358 230-425 (428)
254 PF02239 Cytochrom_D1: Cytochr 99.3 1.7E-08 3.7E-13 91.3 28.7 262 113-420 15-300 (369)
255 KOG1240 Protein kinase contain 99.3 2.3E-10 5.1E-15 110.8 17.5 204 127-360 1038-1251(1431)
256 KOG0974 WD-repeat protein WDR6 99.2 5.3E-10 1.1E-14 106.7 18.3 149 145-336 140-290 (967)
257 KOG2041 WD40 repeat protein [G 99.2 2.9E-10 6.3E-15 104.2 15.2 242 138-413 14-278 (1189)
258 KOG4547 WD40 repeat-containing 99.2 6.9E-10 1.5E-14 99.7 17.1 146 149-335 69-221 (541)
259 KOG4714 Nucleoporin [Nuclear s 99.2 6.1E-10 1.3E-14 90.0 13.8 159 137-335 88-255 (319)
260 KOG4190 Uncharacterized conser 99.2 7.7E-11 1.7E-15 104.9 9.3 287 30-418 732-1032(1034)
261 KOG4547 WD40 repeat-containing 99.2 5.7E-09 1.2E-13 94.0 21.1 193 148-380 3-217 (541)
262 KOG0280 Uncharacterized conser 99.1 1.2E-08 2.7E-13 84.1 18.9 243 138-419 69-330 (339)
263 KOG0280 Uncharacterized conser 99.1 1E-08 2.2E-13 84.6 17.3 159 140-336 123-286 (339)
264 KOG2315 Predicted translation 99.1 2E-08 4.2E-13 90.0 19.3 130 158-335 250-391 (566)
265 KOG2314 Translation initiation 99.1 2E-07 4.4E-12 83.6 25.5 323 36-420 213-571 (698)
266 KOG1409 Uncharacterized conser 99.1 8.4E-09 1.8E-13 86.9 15.7 242 30-380 21-267 (404)
267 KOG4532 WD40-like repeat conta 99.1 9.2E-08 2E-12 78.1 20.6 202 47-286 84-291 (344)
268 PLN02919 haloacid dehalogenase 99.1 5.5E-07 1.2E-11 92.3 31.3 240 139-421 624-887 (1057)
269 KOG2314 Translation initiation 99.0 1.6E-07 3.6E-12 84.2 23.1 284 6-334 219-573 (698)
270 PRK04043 tolB translocation pr 99.0 1.4E-07 3E-12 87.1 23.8 167 115-334 214-400 (419)
271 KOG0309 Conserved WD40 repeat- 99.0 2.7E-09 5.8E-14 98.4 11.9 242 141-419 70-336 (1081)
272 KOG1064 RAVE (regulator of V-A 99.0 3.4E-09 7.3E-14 106.6 13.4 193 35-286 2210-2407(2439)
273 COG4946 Uncharacterized protei 99.0 1.1E-06 2.4E-11 77.6 27.1 149 25-264 351-505 (668)
274 PF04762 IKI3: IKI3 family; I 99.0 7.3E-07 1.6E-11 89.8 29.6 312 33-420 120-454 (928)
275 KOG1064 RAVE (regulator of V-A 99.0 3E-09 6.5E-14 107.0 12.4 189 135-384 2205-2399(2439)
276 COG4946 Uncharacterized protei 99.0 4.7E-07 1E-11 79.8 22.9 163 149-358 331-499 (668)
277 TIGR02658 TTQ_MADH_Hv methylam 99.0 5.2E-06 1.1E-10 73.7 29.5 258 114-421 27-329 (352)
278 PRK04043 tolB translocation pr 98.9 4.2E-07 9.2E-12 83.9 22.5 170 140-358 189-378 (419)
279 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.3E-13 94.6 11.2 268 22-386 54-342 (1081)
280 KOG3914 WD repeat protein WDR4 98.9 2E-08 4.4E-13 86.4 11.9 154 44-223 71-228 (390)
281 COG5354 Uncharacterized protei 98.9 2.3E-06 5E-11 76.2 24.6 235 35-336 73-350 (561)
282 COG5354 Uncharacterized protei 98.9 2.7E-06 5.8E-11 75.9 23.3 233 140-420 73-346 (561)
283 KOG4532 WD40-like repeat conta 98.9 5.1E-07 1.1E-11 73.8 17.4 172 149-358 83-261 (344)
284 PF04762 IKI3: IKI3 family; I 98.8 3.6E-06 7.8E-11 84.9 27.1 246 137-419 74-376 (928)
285 PF15492 Nbas_N: Neuroblastoma 98.8 1.5E-06 3.2E-11 72.2 20.1 180 141-336 46-261 (282)
286 PF15492 Nbas_N: Neuroblastoma 98.8 7.3E-06 1.6E-10 68.2 23.7 229 144-420 3-257 (282)
287 KOG4190 Uncharacterized conser 98.8 1.8E-08 3.9E-13 90.2 8.9 176 130-336 728-908 (1034)
288 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.8E-05 6E-10 69.2 28.4 252 44-336 54-332 (352)
289 PLN02919 haloacid dehalogenase 98.8 3.8E-06 8.2E-11 86.3 26.4 186 141-337 685-891 (1057)
290 KOG1409 Uncharacterized conser 98.8 4E-07 8.7E-12 77.0 14.6 247 128-420 15-268 (404)
291 KOG3914 WD repeat protein WDR4 98.8 2E-07 4.3E-12 80.4 13.0 158 141-339 65-228 (390)
292 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 96.0 5.7 199 24-336 1091-1293(1516)
293 PF08450 SGL: SMP-30/Gluconola 98.7 7.9E-05 1.7E-09 64.2 27.5 176 141-356 42-233 (246)
294 KOG2695 WD40 repeat protein [G 98.7 9.8E-08 2.1E-12 80.7 8.9 154 153-345 228-386 (425)
295 PF00400 WD40: WD domain, G-be 98.7 7E-08 1.5E-12 56.4 5.9 37 128-165 2-39 (39)
296 KOG0882 Cyclophilin-related pe 98.7 9.3E-07 2E-11 77.5 14.7 228 26-343 2-239 (558)
297 KOG4714 Nucleoporin [Nuclear s 98.7 2.1E-07 4.7E-12 75.6 9.5 74 139-219 180-255 (319)
298 TIGR03300 assembly_YfgL outer 98.6 4.5E-05 9.7E-10 70.3 26.2 308 46-419 64-376 (377)
299 PF00930 DPPIV_N: Dipeptidyl p 98.6 3.6E-05 7.8E-10 70.0 25.1 253 138-412 42-346 (353)
300 PF00400 WD40: WD domain, G-be 98.5 3.7E-07 8.1E-12 53.2 6.3 33 183-216 7-39 (39)
301 KOG1008 Uncharacterized conser 98.5 3.5E-08 7.5E-13 90.0 2.1 166 135-335 99-276 (783)
302 PF08450 SGL: SMP-30/Gluconola 98.5 0.00026 5.5E-09 61.0 24.4 219 143-412 4-244 (246)
303 KOG2066 Vacuolar assembly/sort 98.5 6.9E-06 1.5E-10 77.4 15.1 142 139-336 40-189 (846)
304 TIGR03300 assembly_YfgL outer 98.4 0.00023 4.9E-09 65.6 23.8 235 46-348 104-351 (377)
305 KOG0882 Cyclophilin-related pe 98.4 3.9E-05 8.4E-10 67.7 17.1 282 31-331 51-369 (558)
306 KOG1912 WD40 repeat protein [G 98.4 6.3E-05 1.4E-09 70.9 18.9 264 36-335 18-305 (1062)
307 COG0823 TolB Periplasmic compo 98.4 2.7E-05 5.8E-10 71.7 16.7 161 135-337 189-361 (425)
308 KOG2114 Vacuolar assembly/sort 98.3 0.00018 4E-09 68.7 20.9 167 136-336 62-245 (933)
309 PF11768 DUF3312: Protein of u 98.3 8.5E-05 1.8E-09 68.2 18.2 116 189-336 207-331 (545)
310 PF07433 DUF1513: Protein of u 98.3 0.00063 1.4E-08 58.6 21.8 230 140-417 6-280 (305)
311 PRK02888 nitrous-oxide reducta 98.3 0.00045 9.7E-09 65.2 22.2 72 248-335 321-405 (635)
312 KOG2695 WD40 repeat protein [G 98.3 5.7E-06 1.2E-10 70.3 8.9 147 194-380 218-373 (425)
313 PF08596 Lgl_C: Lethal giant l 98.2 0.00065 1.4E-08 62.0 22.4 251 35-336 3-292 (395)
314 KOG2066 Vacuolar assembly/sort 98.2 0.00015 3.2E-09 68.8 17.8 148 147-334 80-233 (846)
315 PF06977 SdiA-regulated: SdiA- 98.2 0.0004 8.7E-09 58.8 18.9 220 135-419 18-247 (248)
316 PF11768 DUF3312: Protein of u 98.2 5.3E-05 1.2E-09 69.5 14.2 76 135-221 256-332 (545)
317 KOG1645 RING-finger-containing 98.2 0.00026 5.6E-09 61.8 17.1 84 128-221 184-269 (463)
318 PF07433 DUF1513: Protein of u 98.1 0.0042 9.2E-08 53.6 26.8 216 37-289 8-259 (305)
319 KOG1275 PAB-dependent poly(A) 98.1 0.00013 2.9E-09 70.0 15.6 149 140-332 179-340 (1118)
320 COG0823 TolB Periplasmic compo 98.1 0.0002 4.3E-09 66.0 16.5 182 93-324 195-389 (425)
321 KOG1275 PAB-dependent poly(A) 98.1 7.1E-05 1.5E-09 71.8 12.8 175 201-420 148-340 (1118)
322 KOG1920 IkappaB kinase complex 98.0 0.0009 2E-08 66.6 19.5 234 138-420 68-320 (1265)
323 KOG3621 WD40 repeat-containing 98.0 0.00013 2.9E-09 68.1 13.1 120 35-219 35-155 (726)
324 KOG1008 Uncharacterized conser 98.0 3.4E-06 7.3E-11 77.4 2.6 199 139-380 57-272 (783)
325 PF13360 PQQ_2: PQQ-like domai 98.0 0.0085 1.8E-07 51.2 25.4 186 113-336 45-232 (238)
326 KOG3621 WD40 repeat-containing 98.0 0.00024 5.1E-09 66.5 13.8 123 186-335 32-155 (726)
327 KOG1832 HIV-1 Vpr-binding prot 97.9 9.5E-06 2.1E-10 77.3 4.8 162 128-336 1092-1257(1516)
328 KOG1645 RING-finger-containing 97.9 0.00041 8.9E-09 60.6 14.1 87 242-345 188-277 (463)
329 PF04053 Coatomer_WDAD: Coatom 97.9 0.0047 1E-07 57.3 22.0 216 138-418 32-258 (443)
330 KOG1920 IkappaB kinase complex 97.9 0.0056 1.2E-07 61.3 22.8 215 34-277 69-323 (1265)
331 PF13360 PQQ_2: PQQ-like domai 97.9 0.003 6.6E-08 53.9 19.4 149 157-345 1-150 (238)
332 KOG1912 WD40 repeat protein [G 97.9 0.00039 8.5E-09 65.8 14.2 154 139-334 16-186 (1062)
333 KOG4640 Anaphase-promoting com 97.8 0.00016 3.5E-09 66.7 9.7 113 11-198 2-116 (665)
334 PF06977 SdiA-regulated: SdiA- 97.8 0.018 3.9E-07 48.9 22.7 171 139-331 65-247 (248)
335 KOG3617 WD40 and TPR repeat-co 97.7 0.0024 5.2E-08 61.3 16.8 71 140-219 61-132 (1416)
336 KOG2114 Vacuolar assembly/sort 97.7 0.013 2.7E-07 56.7 20.2 202 145-380 30-240 (933)
337 PRK11138 outer membrane biogen 97.6 0.027 5.9E-07 52.2 21.7 99 201-337 257-356 (394)
338 PF04053 Coatomer_WDAD: Coatom 97.6 0.0032 6.9E-08 58.4 15.1 139 187-420 32-171 (443)
339 PRK11138 outer membrane biogen 97.6 0.066 1.4E-06 49.7 29.5 149 151-337 161-315 (394)
340 PF08553 VID27: VID27 cytoplas 97.5 0.026 5.7E-07 55.7 20.2 143 201-420 494-645 (794)
341 KOG4640 Anaphase-promoting com 97.4 0.001 2.2E-08 61.7 9.2 76 138-223 20-97 (665)
342 smart00320 WD40 WD40 repeats. 97.4 0.0005 1.1E-08 39.0 4.9 37 128-165 3-40 (40)
343 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.056 1.2E-06 49.3 20.4 238 147-412 1-299 (353)
344 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.026 5.6E-07 40.7 13.8 64 138-213 42-109 (111)
345 PRK13616 lipoprotein LpqB; Pro 97.3 0.022 4.7E-07 55.2 17.7 188 139-357 350-550 (591)
346 PF08553 VID27: VID27 cytoplas 97.3 0.0077 1.7E-07 59.3 14.5 133 117-275 507-646 (794)
347 PRK02888 nitrous-oxide reducta 97.3 0.06 1.3E-06 51.4 19.6 29 308-336 324-353 (635)
348 COG3490 Uncharacterized protei 97.3 0.095 2.1E-06 44.4 18.5 105 139-266 68-180 (366)
349 PF03178 CPSF_A: CPSF A subuni 97.2 0.078 1.7E-06 47.6 19.5 116 136-276 86-202 (321)
350 PF00780 CNH: CNH domain; Int 97.2 0.13 2.8E-06 45.0 23.8 231 149-421 6-254 (275)
351 PF14583 Pectate_lyase22: Olig 97.2 0.16 3.4E-06 45.7 25.5 106 186-323 186-301 (386)
352 KOG2395 Protein involved in va 97.2 0.033 7.2E-07 51.1 16.0 140 202-418 348-496 (644)
353 smart00320 WD40 WD40 repeats. 97.1 0.0019 4.1E-08 36.4 5.3 25 308-332 16-40 (40)
354 PF04841 Vps16_N: Vps16, N-ter 97.1 0.26 5.6E-06 45.8 29.4 50 308-358 220-270 (410)
355 PF03178 CPSF_A: CPSF A subuni 97.0 0.096 2.1E-06 47.1 18.2 137 159-335 62-203 (321)
356 COG3204 Uncharacterized protei 97.0 0.18 3.9E-06 43.1 19.6 176 136-335 83-264 (316)
357 PF06433 Me-amine-dh_H: Methyl 97.0 0.23 5E-06 43.8 24.6 265 115-421 18-319 (342)
358 PF04841 Vps16_N: Vps16, N-ter 97.0 0.31 6.8E-06 45.3 21.2 41 247-288 216-257 (410)
359 KOG3617 WD40 and TPR repeat-co 96.9 0.0022 4.7E-08 61.6 6.7 108 192-335 20-132 (1416)
360 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.2 4.4E-06 41.8 17.0 107 195-336 18-125 (354)
361 PF07995 GSDH: Glucose / Sorbo 96.9 0.32 6.9E-06 43.8 21.5 57 140-198 3-59 (331)
362 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0046 1E-07 37.0 5.4 40 24-65 2-41 (47)
363 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.12 2.6E-06 37.4 12.7 100 190-329 2-109 (111)
364 PF06433 Me-amine-dh_H: Methyl 96.6 0.44 9.5E-06 42.1 24.8 261 44-344 44-329 (342)
365 COG3391 Uncharacterized conser 96.6 0.56 1.2E-05 43.2 22.4 151 141-336 76-241 (381)
366 PF15390 DUF4613: Domain of un 96.5 0.12 2.6E-06 48.4 14.4 116 248-420 57-184 (671)
367 COG3386 Gluconolactonase [Carb 96.5 0.55 1.2E-05 41.5 21.6 148 139-323 111-274 (307)
368 COG3391 Uncharacterized conser 96.5 0.73 1.6E-05 42.5 24.4 157 140-336 117-285 (381)
369 KOG2395 Protein involved in va 96.4 0.062 1.3E-06 49.4 11.6 131 119-276 361-500 (644)
370 COG3490 Uncharacterized protei 96.3 0.57 1.2E-05 39.9 15.9 104 190-323 70-180 (366)
371 PRK13616 lipoprotein LpqB; Pro 96.3 1.1 2.4E-05 43.8 20.2 126 141-281 399-530 (591)
372 PF15390 DUF4613: Domain of un 96.2 1.1 2.4E-05 42.3 23.2 145 17-220 40-188 (671)
373 PF10647 Gmad1: Lipoprotein Lp 96.2 0.37 8E-06 41.5 15.0 155 140-326 25-187 (253)
374 COG3204 Uncharacterized protei 96.2 0.73 1.6E-05 39.5 21.1 188 30-290 82-275 (316)
375 PF12894 Apc4_WD40: Anaphase-p 96.0 0.029 6.4E-07 33.6 5.3 32 186-218 10-41 (47)
376 PF02897 Peptidase_S9_N: Proly 96.0 1.4 3.1E-05 41.2 24.5 225 140-409 125-386 (414)
377 PF05694 SBP56: 56kDa selenium 95.9 1.3 2.9E-05 40.5 21.3 176 143-342 134-350 (461)
378 PF08596 Lgl_C: Lethal giant l 95.8 1.5 3.2E-05 40.5 18.3 33 33-68 86-118 (395)
379 KOG2079 Vacuolar assembly/sort 95.8 0.039 8.5E-07 55.0 8.0 99 258-376 98-197 (1206)
380 KOG2079 Vacuolar assembly/sort 95.8 0.065 1.4E-06 53.5 9.3 98 201-327 100-198 (1206)
381 PF14870 PSII_BNR: Photosynthe 95.7 1.4 3E-05 38.9 18.6 158 136-331 142-301 (302)
382 TIGR03606 non_repeat_PQQ dehyd 95.4 2.4 5.1E-05 39.7 18.8 60 138-198 29-89 (454)
383 COG3386 Gluconolactonase [Carb 95.3 1.9 4.1E-05 38.2 22.1 152 143-334 29-193 (307)
384 PF12234 Rav1p_C: RAVE protein 95.3 0.87 1.9E-05 44.2 14.9 113 144-276 35-156 (631)
385 KOG2444 WD40 repeat protein [G 95.2 0.076 1.6E-06 43.4 6.6 105 201-336 71-179 (238)
386 PF10647 Gmad1: Lipoprotein Lp 95.2 0.87 1.9E-05 39.2 13.5 138 249-412 25-184 (253)
387 PF10168 Nup88: Nuclear pore c 95.1 0.93 2E-05 45.1 14.8 94 301-421 81-178 (717)
388 PF14583 Pectate_lyase22: Olig 95.0 2.6 5.6E-05 38.2 22.3 165 137-332 186-379 (386)
389 TIGR02604 Piru_Ver_Nterm putat 95.0 1 2.3E-05 41.3 14.4 110 139-264 14-140 (367)
390 PF00780 CNH: CNH domain; Int 94.9 2.3 5E-05 37.1 24.8 125 141-283 38-171 (275)
391 PF05694 SBP56: 56kDa selenium 94.9 0.89 1.9E-05 41.6 12.9 133 141-282 183-348 (461)
392 PF10313 DUF2415: Uncharacteri 94.8 0.12 2.7E-06 30.0 4.9 32 188-219 1-34 (43)
393 KOG3630 Nuclear pore complex, 94.8 0.7 1.5E-05 46.9 13.0 152 140-321 102-260 (1405)
394 KOG4499 Ca2+-binding protein R 94.8 1.9 4.1E-05 35.8 13.3 143 138-314 108-263 (310)
395 KOG2444 WD40 repeat protein [G 94.6 0.16 3.5E-06 41.6 7.0 141 202-383 32-177 (238)
396 KOG4649 PQQ (pyrrolo-quinoline 94.3 2.8 6.1E-05 35.4 19.8 107 151-287 24-133 (354)
397 PF10313 DUF2415: Uncharacteri 94.3 0.16 3.5E-06 29.5 4.6 29 249-277 2-34 (43)
398 PF07569 Hira: TUP1-like enhan 94.2 0.41 8.9E-06 40.1 9.0 79 195-277 18-96 (219)
399 KOG1897 Damage-specific DNA bi 94.1 7.3 0.00016 39.4 28.1 102 301-412 771-887 (1096)
400 PF10168 Nup88: Nuclear pore c 94.1 7.2 0.00016 39.1 24.6 84 138-221 84-182 (717)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 93.5 0.8 1.7E-05 42.2 10.0 48 243-291 303-351 (415)
402 PF12234 Rav1p_C: RAVE protein 93.5 1.9 4.2E-05 41.9 12.8 69 249-333 31-103 (631)
403 PF02897 Peptidase_S9_N: Proly 93.4 6.9 0.00015 36.6 27.2 248 40-336 128-406 (414)
404 PF08728 CRT10: CRT10; InterP 93.3 5.9 0.00013 39.2 15.8 166 150-333 49-245 (717)
405 PF07569 Hira: TUP1-like enhan 93.2 0.71 1.5E-05 38.7 8.6 78 310-420 16-93 (219)
406 TIGR02604 Piru_Ver_Nterm putat 93.0 5.4 0.00012 36.6 14.9 73 188-276 14-99 (367)
407 cd00216 PQQ_DH Dehydrogenases 92.8 9.5 0.00021 36.6 26.6 25 315-339 405-429 (488)
408 KOG4460 Nuclear pore complex, 92.8 2.6 5.7E-05 39.3 11.9 91 303-420 102-196 (741)
409 KOG2377 Uncharacterized conser 92.5 5.2 0.00011 36.7 13.2 129 142-290 26-154 (657)
410 KOG1897 Damage-specific DNA bi 92.4 14 0.00031 37.6 28.9 196 189-419 489-698 (1096)
411 PRK13684 Ycf48-like protein; P 92.1 8.9 0.00019 34.6 18.2 158 138-332 172-329 (334)
412 KOG2280 Vacuolar assembly/sort 91.8 13 0.00029 36.5 15.7 79 128-215 74-152 (829)
413 KOG1916 Nuclear protein, conta 91.4 0.2 4.3E-06 49.3 3.5 130 139-282 181-328 (1283)
414 COG4590 ABC-type uncharacteriz 91.0 2.3 5.1E-05 38.9 9.5 172 128-336 211-388 (733)
415 PF05096 Glu_cyclase_2: Glutam 90.9 9.6 0.00021 32.7 13.9 113 188-336 45-159 (264)
416 KOG2377 Uncharacterized conser 90.7 6.6 0.00014 36.1 11.9 106 136-264 64-170 (657)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 90.5 5.7 0.00012 36.8 11.8 79 135-221 304-401 (415)
418 PF13449 Phytase-like: Esteras 89.5 15 0.00033 33.0 18.7 130 188-324 20-166 (326)
419 PF13449 Phytase-like: Esteras 89.2 16 0.00035 32.8 17.7 65 140-207 86-165 (326)
420 TIGR02276 beta_rpt_yvtn 40-res 88.8 2.6 5.6E-05 24.1 5.8 34 257-291 1-36 (42)
421 PF14761 HPS3_N: Hermansky-Pud 88.5 13 0.00028 30.7 12.2 118 151-277 29-164 (215)
422 COG5167 VID27 Protein involved 88.4 17 0.00037 34.1 12.9 139 258-419 478-629 (776)
423 PLN00033 photosystem II stabil 88.4 21 0.00046 33.1 18.7 155 141-331 241-396 (398)
424 PF02333 Phytase: Phytase; In 88.0 21 0.00046 32.6 21.1 152 159-336 127-292 (381)
425 KOG2247 WD40 repeat-containing 88.0 0.071 1.5E-06 48.6 -2.1 132 190-358 37-170 (615)
426 KOG1900 Nuclear pore complex, 87.7 8.1 0.00017 40.5 11.5 80 138-220 178-274 (1311)
427 KOG3630 Nuclear pore complex, 87.3 4.7 0.0001 41.4 9.5 102 140-264 157-260 (1405)
428 PF12657 TFIIIC_delta: Transcr 87.1 8.8 0.00019 30.8 9.7 29 307-335 88-122 (173)
429 PF07676 PD40: WD40-like Beta 86.5 2.4 5.1E-05 24.0 4.5 19 394-412 9-27 (39)
430 PF14761 HPS3_N: Hermansky-Pud 86.5 17 0.00037 30.0 12.4 128 251-420 21-161 (215)
431 COG5167 VID27 Protein involved 86.2 18 0.00038 34.0 11.7 101 154-276 531-632 (776)
432 PF12657 TFIIIC_delta: Transcr 86.1 5.8 0.00013 31.8 8.1 31 189-219 87-122 (173)
433 KOG1916 Nuclear protein, conta 85.9 1.4 2.9E-05 43.9 5.0 151 157-334 109-265 (1283)
434 PF14870 PSII_BNR: Photosynthe 85.8 25 0.00053 31.2 28.2 189 148-419 113-301 (302)
435 PF08728 CRT10: CRT10; InterP 85.7 14 0.00031 36.6 11.7 112 149-275 113-245 (717)
436 KOG1900 Nuclear pore complex, 85.1 16 0.00034 38.5 12.0 85 247-336 178-274 (1311)
437 PRK13684 Ycf48-like protein; P 84.2 32 0.00069 31.1 16.0 149 247-420 172-329 (334)
438 KOG4460 Nuclear pore complex, 83.6 32 0.00069 32.6 12.2 83 139-221 104-201 (741)
439 COG4590 ABC-type uncharacteriz 83.2 11 0.00023 34.8 9.0 160 246-420 219-384 (733)
440 KOG2247 WD40 repeat-containing 82.6 0.28 6.1E-06 44.9 -0.9 149 137-329 33-183 (615)
441 PF07676 PD40: WD40-like Beta 82.6 6.6 0.00014 22.1 5.3 28 137-164 7-38 (39)
442 cd00216 PQQ_DH Dehydrogenases 81.6 52 0.0011 31.7 30.7 23 47-69 61-83 (488)
443 TIGR03606 non_repeat_PQQ dehyd 81.5 41 0.0009 31.8 12.5 30 248-277 30-60 (454)
444 PRK10115 protease 2; Provision 81.0 66 0.0014 32.5 25.9 112 139-276 127-255 (686)
445 KOG1983 Tomosyn and related SN 79.8 52 0.0011 34.8 13.8 43 24-68 24-68 (993)
446 PHA02713 hypothetical protein; 78.0 73 0.0016 31.3 16.5 22 315-336 512-535 (557)
447 KOG4441 Proteins containing BT 77.2 78 0.0017 31.2 18.7 22 315-336 475-501 (571)
448 PF11715 Nup160: Nucleoporin N 77.0 11 0.00025 36.7 8.1 74 148-222 156-252 (547)
449 PF14781 BBS2_N: Ciliary BBSom 76.6 31 0.00066 26.2 12.2 63 149-220 63-127 (136)
450 KOG2280 Vacuolar assembly/sort 75.9 90 0.0019 31.2 15.0 40 247-287 216-256 (829)
451 KOG4499 Ca2+-binding protein R 75.4 49 0.0011 27.9 9.7 99 248-358 158-264 (310)
452 PF14727 PHTB1_N: PTHB1 N-term 73.4 81 0.0017 29.5 14.7 113 197-335 34-164 (418)
453 PLN00033 photosystem II stabil 71.8 86 0.0019 29.2 18.1 112 138-273 280-396 (398)
454 PF11635 Med16: Mediator compl 71.1 1.3E+02 0.0028 30.9 18.5 78 188-271 260-345 (753)
455 KOG4659 Uncharacterized conser 69.7 1.7E+02 0.0036 31.7 20.6 72 250-322 595-679 (1899)
456 PF07250 Glyoxal_oxid_N: Glyox 69.7 71 0.0015 27.3 11.2 125 191-336 70-199 (243)
457 PF14269 Arylsulfotran_2: Aryl 69.3 25 0.00054 31.2 7.5 75 249-334 145-220 (299)
458 PF03088 Str_synth: Strictosid 69.0 16 0.00035 25.4 5.0 43 206-266 33-75 (89)
459 PF03022 MRJP: Major royal jel 68.8 83 0.0018 27.8 18.4 153 160-335 35-216 (287)
460 COG5276 Uncharacterized conser 67.7 86 0.0019 27.5 18.1 118 138-282 86-205 (370)
461 PF10214 Rrn6: RNA polymerase 66.9 1.6E+02 0.0035 30.3 18.8 224 120-371 19-266 (765)
462 COG3823 Glutamine cyclotransfe 66.0 76 0.0016 26.3 10.4 187 46-265 55-247 (262)
463 KOG3522 Predicted guanine nucl 65.1 91 0.002 31.6 10.7 74 186-277 625-698 (925)
464 COG4257 Vgb Streptogramin lyas 64.9 95 0.0021 27.0 13.9 158 139-336 62-220 (353)
465 PHA03098 kelch-like protein; P 64.6 1.4E+02 0.0031 29.0 16.0 22 315-336 487-513 (534)
466 PF01731 Arylesterase: Arylest 64.6 28 0.0006 24.1 5.4 29 248-276 54-84 (86)
467 PRK10115 protease 2; Provision 64.5 1.7E+02 0.0036 29.7 22.5 113 188-334 127-255 (686)
468 COG5290 IkappaB kinase complex 64.2 1.7E+02 0.0037 29.7 13.9 71 191-277 250-325 (1243)
469 PF14781 BBS2_N: Ciliary BBSom 63.5 64 0.0014 24.5 12.7 105 145-276 5-125 (136)
470 TIGR02171 Fb_sc_TIGR02171 Fibr 63.0 50 0.0011 33.8 8.8 48 247-294 349-403 (912)
471 TIGR03118 PEPCTERM_chp_1 conse 60.9 1.2E+02 0.0026 26.9 23.9 59 264-337 217-282 (336)
472 PF01436 NHL: NHL repeat; Int 60.5 22 0.00048 18.3 3.9 24 308-331 5-28 (28)
473 PF05096 Glu_cyclase_2: Glutam 60.3 1.1E+02 0.0025 26.4 19.1 166 128-336 34-205 (264)
474 PF11715 Nup160: Nucleoporin N 59.8 16 0.00034 35.8 4.9 24 46-69 229-252 (547)
475 PF07995 GSDH: Glucose / Sorbo 59.3 1.4E+02 0.003 27.0 24.4 70 248-329 253-330 (331)
476 PHA02713 hypothetical protein; 59.2 1.5E+02 0.0033 29.1 11.5 65 149-221 463-536 (557)
477 PF01731 Arylesterase: Arylest 57.8 61 0.0013 22.5 6.8 28 308-335 57-85 (86)
478 PF03088 Str_synth: Strictosid 56.1 49 0.0011 23.1 5.5 39 268-323 37-75 (89)
479 KOG3616 Selective LIM binding 55.9 33 0.00071 34.0 6.0 29 308-336 18-46 (1636)
480 TIGR03075 PQQ_enz_alc_DH PQQ-d 55.0 2.1E+02 0.0046 27.9 21.8 25 314-338 310-337 (527)
481 COG5276 Uncharacterized conser 53.2 1.6E+02 0.0035 26.0 15.3 140 248-414 87-234 (370)
482 PF13570 PQQ_3: PQQ-like domai 53.2 29 0.00063 19.6 3.5 21 315-335 20-40 (40)
483 KOG1898 Splicing factor 3b, su 52.5 3.1E+02 0.0067 29.0 18.5 137 159-335 912-1049(1205)
484 PF14727 PHTB1_N: PTHB1 N-term 49.7 2.3E+02 0.0049 26.7 24.6 57 201-275 146-203 (418)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 49.4 1.2E+02 0.0025 31.4 8.8 48 308-355 353-406 (912)
486 smart00564 PQQ beta-propeller 49.1 36 0.00078 17.9 3.3 22 48-69 7-28 (33)
487 KOG3616 Selective LIM binding 46.8 82 0.0018 31.5 7.1 34 187-221 14-47 (1636)
488 PF12341 DUF3639: Protein of u 45.8 44 0.00095 17.3 3.7 26 34-63 2-27 (27)
489 KOG4659 Uncharacterized conser 45.1 4.5E+02 0.0098 28.8 22.4 22 391-412 659-680 (1899)
490 PF02333 Phytase: Phytase; In 44.1 2.6E+02 0.0057 25.8 20.8 152 149-336 67-239 (381)
491 TIGR03075 PQQ_enz_alc_DH PQQ-d 43.2 3.3E+02 0.0071 26.6 21.9 31 258-289 471-502 (527)
492 PF12768 Rax2: Cortical protei 43.1 2.3E+02 0.005 24.9 9.6 54 159-221 16-75 (281)
493 KOG0918 Selenium-binding prote 40.9 3E+02 0.0064 25.5 10.4 114 158-280 228-346 (476)
494 TIGR02608 delta_60_rpt delta-6 40.9 90 0.0019 19.5 4.5 29 308-336 4-37 (55)
495 PF08801 Nucleoporin_N: Nup133 40.4 3.2E+02 0.0069 25.7 15.2 30 307-336 192-221 (422)
496 PF11635 Med16: Mediator compl 37.5 4.8E+02 0.01 26.9 21.3 82 247-329 259-345 (753)
497 PF07250 Glyoxal_oxid_N: Glyox 37.3 1.4E+02 0.003 25.6 6.5 73 249-332 68-146 (243)
498 COG4447 Uncharacterized protei 37.1 2.9E+02 0.0062 24.2 9.4 25 396-420 306-330 (339)
499 KOG2727 Rab3 GTPase-activating 37.0 39 0.00084 34.4 3.5 70 249-336 323-408 (1244)
500 KOG4441 Proteins containing BT 36.5 4.4E+02 0.0094 26.1 17.2 63 149-221 380-455 (571)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-50 Score=334.62 Aligned_cols=326 Identities=16% Similarity=0.248 Sum_probs=274.1
Q ss_pred cccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 25 DYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 25 ~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
.+..++ ||.++|.++.| +|++..|++|+.|.++|+||+.+... ......|... ++|++++|++.
T Consensus 106 rCssS~~GH~e~Vl~~~f--sp~g~~l~tGsGD~TvR~WD~~TeTp-~~t~KgH~~W------------VlcvawsPDgk 170 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQF--SPTGSRLVTGSGDTTVRLWDLDTETP-LFTCKGHKNW------------VLCVAWSPDGK 170 (480)
T ss_pred eeccccCCCCCcEEEEEe--cCCCceEEecCCCceEEeeccCCCCc-ceeecCCccE------------EEEEEECCCcc
Confidence 333343 89999999999 78999999999999999999998662 2223345554 55566667888
Q ss_pred eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-----CCCEEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVD 177 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~ 177 (421)
.+++|+. ++.+++|+..++. +..+.+ .+|...|++|+|.| ..++||++ .||+|+|||+. .+.++.++
T Consensus 171 ~iASG~~--dg~I~lwdpktg~--~~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~l- 243 (480)
T KOG0271|consen 171 KIASGSK--DGSIRLWDPKTGQ--QIGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTL- 243 (480)
T ss_pred hhhcccc--CCeEEEecCCCCC--cccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEe-
Confidence 8888887 7789999988871 334555 99999999999966 67899998 99999999998 66676654
Q ss_pred cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc-
Q 014644 178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA- 256 (421)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s- 256 (421)
.+|+.+|+|++|--+| +|++++.|++|++|+...|..+ +.+.+| ...|+.++.+
T Consensus 244 ------sgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkGH-------------ahwvN~lalsT 298 (480)
T KOG0271|consen 244 ------SGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKGH-------------AHWVNHLALST 298 (480)
T ss_pred ------ccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhccc-------------chheeeeeccc
Confidence 8999999999998765 9999999999999999988766 666664 6677777666
Q ss_pred ----------CCC-------------------------CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccC
Q 014644 257 ----------NDG-------------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 300 (421)
Q Consensus 257 ----------~~~-------------------------~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
|.+ +.+++|+| .++.+|+.....+++.++.+|+..+
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV-------- 370 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV-------- 370 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe--------
Confidence 223 34999988 9999999877678999999999976
Q ss_pred CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-cc
Q 014644 301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HE 379 (421)
Q Consensus 301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~i 379 (421)
..+.||||+++||++|.|..|++|+.+++ +....+++|-++|..++|+.+ .+ +|++|+.|.+ ++
T Consensus 371 -------n~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaD--sR-----LlVS~SkDsTLKv 435 (480)
T KOG0271|consen 371 -------NHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSAD--SR-----LLVSGSKDSTLKV 435 (480)
T ss_pred -------eeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccC--cc-----EEEEcCCCceEEE
Confidence 89999999999999999999999999998 778999999999999999998 44 9999999999 99
Q ss_pred C--CCCCccccccccccCeEEEEEccCCCeEEEecCCc-eEEEe
Q 014644 380 N--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 420 (421)
Q Consensus 380 w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~i~~ 420 (421)
| ........+-+|...|..+.|+|||..+++|+.|. +++|.
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9 55566777889999999999999999999999665 77774
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-47 Score=309.81 Aligned_cols=373 Identities=52% Similarity=0.826 Sum_probs=314.8
Q ss_pred CceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccc
Q 014644 9 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 88 (421)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~ 88 (421)
+||++..+||+|+|+|+|+++++.+++|+.++|++..+...++.+..|++|++|.+.....+. ...+.+.
T Consensus 60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~--------- 129 (433)
T KOG1354|consen 60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE--------- 129 (433)
T ss_pred cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc---------
Confidence 599999999999999999999999999999999977778899999999999999998755322 1111111
Q ss_pred cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCC
Q 014644 89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI 168 (421)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~ 168 (421)
.. +.+...+...+.+-..+......|.+++..+|+-.|+++.++.|++.+++++|-.|.+|+++.
T Consensus 130 --~~-------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei 194 (433)
T KOG1354|consen 130 --EG-------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI 194 (433)
T ss_pred --cC-------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence 00 111111222455555666667789999989999999999999999999999999999999998
Q ss_pred CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc
Q 014644 169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 248 (421)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 248 (421)
..+.+.++++||.++..-+.-|++..|+|..++.++..+..|+|++.|+|+..+++.+.+.++. .+.|..+.++.+.-.
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIs 273 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIIS 273 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhh
Confidence 9999999999999999999999999999998899999999999999999999999999999998 899999999999999
Q ss_pred ceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644 249 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 328 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i 328 (421)
.|..+.|+++|+|+++.+.-+|++||+....+++.++..|......+|.+|++|+||+-+.++|+.++.++++|+..+.+
T Consensus 274 SISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 274 SISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred hhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 99999999999999999889999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCe
Q 014644 329 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL 407 (421)
Q Consensus 329 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~ 407 (421)
+++++..+.....++.+...+...-.... ...+.+++.+.. .+| ....++...+...+|||..+.
T Consensus 354 rvf~~~~gsk~d~tl~asr~~~~~~~~~k--------~~~V~~~g~r~~~~~~------vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 354 RVFNLARGSKEDFTLEASRKNMKPRKVLK--------LRLVSSSGKRKRDEIS------VDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred EEecCCCCcceeecccccccCCccccccc--------ceeeecCCCccccccc------cchhhhhhHHHhhccCCccce
Confidence 99998888776667666555421111110 123455554444 444 445567788899999999999
Q ss_pred EEEecCCceEEEeC
Q 014644 408 IACANGNSLFFHYA 421 (421)
Q Consensus 408 la~~~~~~~~i~~~ 421 (421)
+|++..+++|||++
T Consensus 420 ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 420 IAVAATNNLYIFQD 433 (433)
T ss_pred eeeeecCceEEecC
Confidence 99999999999974
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9e-45 Score=305.51 Aligned_cols=280 Identities=16% Similarity=0.212 Sum_probs=246.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
++-+.+|..+.| +.++..|+|||.+|.++||+..+..
T Consensus 172 ~gd~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~----------------------------------------- 208 (459)
T KOG0272|consen 172 VGDTRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCN----------------------------------------- 208 (459)
T ss_pred ccCCCcceeeEe--ecCCCeEEEeecCCceeEeecCCcc-----------------------------------------
Confidence 455789999999 7999999999999999999987743
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
.+.++ .+|...|.++.|+|. +..+|+| .||++++|++. +..++. .+.+|
T Consensus 209 -------------------~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH 260 (459)
T KOG0272|consen 209 -------------------LLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGH 260 (459)
T ss_pred -------------------eeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcc
Confidence 23445 899999999999996 6689999 99999999998 445553 45899
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
...|..++|+|+| ++|++++.|.+-++||++++... ...++ |...|.+++|.|||.++++|+
T Consensus 261 ~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~QEG-------------Hs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 261 LARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQEG-------------HSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred hhhheeeeecCCC-ceeeecccccchhhcccccchhh----Hhhcc-------------cccccceeEecCCCceeeccC
Confidence 9999999999999 99999999999999999997643 33444 588999999999999999987
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
. ..-+|||+++ +.++..+.+|...+ .+++|+|+|..||||+.|++++|||++.. ....++.+
T Consensus 323 lD~~~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipA 385 (459)
T KOG0272|consen 323 LDSLGRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPA 385 (459)
T ss_pred ccchhheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccc-ccceeccc
Confidence 5 8889999998 99999999998876 89999999999999999999999999987 66899999
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
|.+.|..+.|.|. .|. +|++++.|++ +|| .....+..+.||...|.++..+||+..+++++ +..+.+|..
T Consensus 386 H~nlVS~Vk~~p~-~g~-----fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQ-EGY-----FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred ccchhhheEeccc-CCe-----EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 9999999999983 244 9999999999 999 44567778889999999999999999999999 667999974
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-41 Score=277.91 Aligned_cols=294 Identities=15% Similarity=0.174 Sum_probs=245.3
Q ss_pred cccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEE
Q 014644 85 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 163 (421)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~l 163 (421)
++....+.+++..++|++..+++|+- +.++|+||..+. .+..+. ++|.+.|.|++|+|||+.||+| .||+|++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsG--D~TvR~WD~~Te---Tp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSG--DTTVRLWDLDTE---TPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCC--CceEEeeccCCC---Ccceee-cCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 34445678899999999999999986 668999999998 888888 9999999999999999999999 9999999
Q ss_pred EeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC
Q 014644 164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 239 (421)
Q Consensus 164 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~ 239 (421)
||.+++++..+ .+.+|...|++++|.|-. +.+|++++.||.|+|||+..+... ..+.+
T Consensus 184 wdpktg~~~g~-------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~----~~lsg------- 245 (480)
T KOG0271|consen 184 WDPKTGQQIGR-------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV----RTLSG------- 245 (480)
T ss_pred ecCCCCCcccc-------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE----EEecc-------
Confidence 99996666554 459999999999998632 378999999999999999987654 45555
Q ss_pred cccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-
Q 014644 240 KSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL- 317 (421)
Q Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~- 317 (421)
|..+|+++.|--+| +|++|+. ++|++|+... +.....+++|...+..++=. .|.. ...-+|.|.++
T Consensus 246 ------HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lals--Tdy~--LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 246 ------HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALS--TDYV--LRTGAFDHTGRK 313 (480)
T ss_pred ------CccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHHhhcccchheeeeecc--chhh--hhcccccccccc
Confidence 48999999998655 8888876 9999999985 99999999999887543200 0000 01123444444
Q ss_pred ------------------------EEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644 318 ------------------------HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 373 (421)
Q Consensus 318 ------------------------~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 373 (421)
.|++|++|.++.+|+-....+.+..+.+|...|+.+.|+|+ ++ ++|+++
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--~r-----~IASaS 386 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--GR-----YIASAS 386 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--cc-----EEEEee
Confidence 49999999999999988776778899999999999999999 44 999999
Q ss_pred ccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 374 YRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 374 ~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
.|.. ++| ..+..+....+|-..|..++|+.|.++|++++ +..|.+|+.
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 9999 999 67788889999999999999999999999999 556999963
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=255.43 Aligned_cols=280 Identities=15% Similarity=0.159 Sum_probs=236.8
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+|..+|.++.| ++|+++++++|.||.+.|||.-+.. ...
T Consensus 52 kGH~~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~ha------------------------------------- 92 (343)
T KOG0286|consen 52 KGHLNKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHA------------------------------------- 92 (343)
T ss_pred cccccceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeE-------------------------------------
Confidence 489999999999 7999999999999999999976643 111
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCc
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDD 185 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~ 185 (421)
+ .-....|..++|+|.|+++|+| -|+...||++... +..++.. ..+.+
T Consensus 93 ------------------------i-pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~----r~l~g 143 (343)
T KOG0286|consen 93 ------------------------I-PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS----RELAG 143 (343)
T ss_pred ------------------------E-ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceee----eeecC
Confidence 1 2334579999999999999999 9999999999843 2122211 35689
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEE
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 264 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 264 (421)
|++.+.|+.|.+| ..|+++|.|.+..+||+++++.. ..|.+ |.+.|.+++++| +++.+++
T Consensus 144 HtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f~G-------------H~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 144 HTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVFHG-------------HTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEecC-------------CcccEEEEecCCCCCCeEEe
Confidence 9999999999996 58999999999999999998755 55555 599999999999 9999999
Q ss_pred ec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644 265 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 265 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 343 (421)
|+ |+..+|||++. +..++.|.+|+..+ .+++|.|+|.-+++|++|++.++||++.. +.+..+
T Consensus 205 g~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~y 267 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVY 267 (343)
T ss_pred cccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCCCceeEEEeecCC-cEEeee
Confidence 85 59999999996 89999999999855 89999999999999999999999999987 445555
Q ss_pred ec--CCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644 344 EA--GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF 417 (421)
Q Consensus 344 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~ 417 (421)
+. -..++.+++|+.+ |+ +|.+|..|.. .+| -.++....+.+|+.+|.++..+|||..|++|+ +..++
T Consensus 268 s~~~~~~gitSv~FS~S--GR-----lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKS--GR-----LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred ccCcccCCceeEEEccc--cc-----EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 43 3457899999988 66 8999999999 999 45677888889999999999999999999999 56699
Q ss_pred EEe
Q 014644 418 FHY 420 (421)
Q Consensus 418 i~~ 420 (421)
||+
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5e-40 Score=276.98 Aligned_cols=241 Identities=18% Similarity=0.263 Sum_probs=213.2
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|.+.|.++.|.|-.++..+|||+.||++++|++++.
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------------------------------------ 251 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------------------------------------ 251 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------------------------------------
Confidence 48999999999953323678999999999999998874
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.++..+ .+|..+|..++|+|+|++|+++ .|.+-++||+++..+.+. .++|..
T Consensus 252 ------------------~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGHs~ 304 (459)
T KOG0272|consen 252 ------------------TPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGHSK 304 (459)
T ss_pred ------------------cchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccccc
Confidence 333445 8999999999999999999999 999999999995555443 289999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.|.+++|+||| .++++|+.|..-+|||+++++.+ ..+.+ |..+|.+++|+|+|..||+|+.
T Consensus 305 ~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEecCCC-ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecCCC
Confidence 99999999999 99999999999999999999865 55555 4889999999999999999975
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 346 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 346 (421)
++++|||++. ...+.++.+|...+ ..++|+| .|.+|++++.|++++||.-.+. .+.+.+.||
T Consensus 367 nt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGH 429 (459)
T KOG0272|consen 367 NTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGH 429 (459)
T ss_pred CcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCC
Confidence 9999999997 77789999999877 7999999 6899999999999999999988 889999999
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
.+.|-++..+++ ...+++++.|++ ++|.
T Consensus 430 e~kV~s~Dis~d-------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPD-------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccC-------CceEEEeccCceeeecc
Confidence 999999999999 448999999999 9993
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=249.50 Aligned_cols=285 Identities=15% Similarity=0.163 Sum_probs=228.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|++.|+.++..+ .+.+.+++++.|.++.+|++.....
T Consensus 12 ~gh~d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~dd~---------------------------------------- 50 (315)
T KOG0279|consen 12 EGHTDWVTALAIKI-KNSDILVSASRDKTIIVWKLTSDDI---------------------------------------- 50 (315)
T ss_pred cCCCceEEEEEeec-CCCceEEEcccceEEEEEEeccCcc----------------------------------------
Confidence 47999999999953 3578999999999999999876420
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
. -+.+++.+ .||+..|..+..++||++.+++ .|+++++||+. .++..+.+ .+|..
T Consensus 51 ------------~---~G~~~r~~-~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~~t~~f-------~GH~~ 106 (315)
T KOG0279|consen 51 ------------K---YGVPVRRL-TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGESTRRF-------VGHTK 106 (315)
T ss_pred ------------c---cCceeeee-eccceEecceEEccCCceEEeccccceEEEEEec-CCcEEEEE-------EecCC
Confidence 0 01566777 8999999999999999999999 99999999999 45655544 89999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD 266 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~ 266 (421)
.|.+++|+||. ..|++|+.|.+|++|++...... .+.. ..+.+.|+++.|+|+ ..+|++++
T Consensus 107 dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-----t~~~-----------~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-----TIHE-----------DSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCCC-ceeecCCCcceeeeeeecccEEE-----EEec-----------CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 99999999998 99999999999999999875422 1111 112578999999998 67888887
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
. +++++||+++ .+....+.+|.+.+ +.+++||||..+++|+.||.+.+||++.++. .....
T Consensus 170 ~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~ 231 (315)
T KOG0279|consen 170 WDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLE 231 (315)
T ss_pred CCceEEEEccCC-cchhhccccccccE---------------EEEEECCCCCEEecCCCCceEEEEEccCCce--eEecc
Confidence 5 9999999996 88888898998866 7899999999999999999999999997733 55567
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCcccCCCC--C----cccccccc-----ccCeEEEEEccCCCeEEEec-C
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS--G----HHELSYNL-----SSKLLHLAWHPTTNLIACAN-G 413 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~--~----~~~~~~~~-----~~~v~~~~~spd~~~la~~~-~ 413 (421)
|...|++++|+|.+. .|+.+.....+||+.. . ......+. .-...+++|++||..|.+|- +
T Consensus 232 a~~~v~sl~fspnry-------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRY-------WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred CCCeEeeEEecCCce-------eEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 889999999999842 5666665556999332 1 12222222 22356899999999999998 6
Q ss_pred CceEEEeC
Q 014644 414 NSLFFHYA 421 (421)
Q Consensus 414 ~~~~i~~~ 421 (421)
+.|++|+.
T Consensus 305 ~~irv~qv 312 (315)
T KOG0279|consen 305 NVIRVWQV 312 (315)
T ss_pred CcEEEEEe
Confidence 67999963
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-36 Score=261.46 Aligned_cols=372 Identities=13% Similarity=0.185 Sum_probs=267.7
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
-+|...++-.+| +|.|.++|+|...|+|||||....+ +.+-.-....++|.+++|.....+|.+....+.. +...-
T Consensus 56 tEH~~~vtVAky--SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F 132 (603)
T KOG0318|consen 56 TEHAHQVTVAKY--SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVF 132 (603)
T ss_pred ccccceeEEEEe--CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEE
Confidence 478999999999 6889999999999999999977644 4444444577899999999998888887765443 22211
Q ss_pred cccccc---------------------ceeEEeec--------ccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC
Q 014644 109 EWTENM---------------------ATKIANVG--------NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD 158 (421)
Q Consensus 109 ~~~~~~---------------------~~~~~~~~--------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d 158 (421)
.++++. -.|+-... .+...+-...+ +.|..-|+|+.|+|||.++++. .|
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCC
Confidence 111111 11111110 01112233345 6789999999999999999998 99
Q ss_pred CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccc------------
Q 014644 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS------------ 226 (421)
Q Consensus 159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~------------ 226 (421)
|++.+||=. .++.+..++ .-.+|++.|++++|+||+ ..+++++.|.+++|||+.+..+..+.
T Consensus 212 gki~iyDGk-tge~vg~l~----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 212 GKIYIYDGK-TGEKVGELE----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred ccEEEEcCC-CccEEEEec----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 999999998 455555542 236899999999999999 99999999999999999886542110
Q ss_pred ----------------hhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc--------
Q 014644 227 ----------------ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP-------- 281 (421)
Q Consensus 227 ----------------~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~-------- 281 (421)
+..++. ..+.....+.+|...|+++..+||+++|++|+. |.|.-|+..+ +..
T Consensus 286 ~lWqkd~lItVSl~G~in~ln~--~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~g~~h 362 (603)
T KOG0318|consen 286 CLWQKDHLITVSLSGTINYLNP--SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLAGKGH 362 (603)
T ss_pred EEEeCCeEEEEEcCcEEEEecc--cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccccccc
Confidence 011111 122244557899999999999999999999987 9999999864 221
Q ss_pred ---eeEEeecc---------------------------------Cccc--c-----------------c---ccccCCCc
Q 014644 282 ---VATFKIHE---------------------------------HLRP--K-----------------L---CDLYNNDS 303 (421)
Q Consensus 282 ---~~~~~~~~---------------------------------~~~~--~-----------------~---~~~~~~~~ 303 (421)
+..+..++ ++.. . + ..+...+.
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~ 442 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI 442 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence 11111111 0000 0 0 00111223
Q ss_pred ceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 304 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 304 ~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
.|...+++++|++..++.|++||.|+||.+..+. .....+..|.+++..++++|+ +.+||+|...++ -+|+
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd-------~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD-------GAYLAAGDASRKVVLYD 515 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC-------CcEEEEeccCCcEEEEE
Confidence 3335678999999999999999999999999764 335578899999999999999 559999999999 9994
Q ss_pred CCC--c-cccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 382 SSG--H-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 382 ~~~--~-~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
... . .....-|...|.+++|+|+..++|+|+ +.+++||+.
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 332 2 222234889999999999999999999 677999963
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-37 Score=241.41 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=231.7
Q ss_pred CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644 47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 126 (421)
Q Consensus 47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 126 (421)
.-+|++++.|.+||+|...+|.. .....+++ ..+.++...++...++.+.. ..+|++|+.+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C--~rTiqh~d-----------sqVNrLeiTpdk~~LAaa~~---qhvRlyD~~S~np 73 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC--SRTIQHPD-----------SQVNRLEITPDKKDLAAAGN---QHVRLYDLNSNNP 73 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE--EEEEecCc-----------cceeeEEEcCCcchhhhccC---CeeEEEEccCCCC
Confidence 45899999999999999999872 22223333 46667777777777776553 4689999987643
Q ss_pred eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644 127 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 205 (421)
Q Consensus 127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 205 (421)
.++.++ .+|++.|.++.|..+|+.+++| +||+++|||++ ...+.+. ..|..+|.++..+|+. ..|++
T Consensus 74 -~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-~~~~qR~--------~~~~spVn~vvlhpnQ-teLis 141 (311)
T KOG0315|consen 74 -NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-SLSCQRN--------YQHNSPVNTVVLHPNQ-TELIS 141 (311)
T ss_pred -CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEecc-Ccccchh--------ccCCCCcceEEecCCc-ceEEe
Confidence 378888 9999999999999999999999 99999999999 4444333 4577999999999998 89999
Q ss_pred EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC-----C
Q 014644 206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----S 279 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~-----~ 279 (421)
+..+|.|++||+....... .+ .++....|.++...|||.+++++.. |..++|++-.. -
T Consensus 142 ~dqsg~irvWDl~~~~c~~----~l------------iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTH----EL------------IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred ecCCCcEEEEEccCCcccc----cc------------CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence 9999999999999864321 11 1112468999999999999999987 99999998641 2
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCC
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 359 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
+++.+++.|..-+ ..+-+|||+++|+++|.|.+++||+.++.-.....+++|...+...+|+.+
T Consensus 206 ~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d- 269 (311)
T KOG0315|consen 206 EPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD- 269 (311)
T ss_pred eEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC-
Confidence 4566677777654 789999999999999999999999999875667889999999999999999
Q ss_pred cccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEc
Q 014644 360 RARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH 402 (421)
Q Consensus 360 ~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~s 402 (421)
+ .+|++|+.|.. ++| ..++......+|.....+++.+
T Consensus 270 -g-----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 270 -G-----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -c-----cEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4 49999999999 999 4445555556676666565543
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=267.29 Aligned_cols=277 Identities=19% Similarity=0.269 Sum_probs=233.9
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
-+-.|+.|.| .|+|+.|++|+..|.+.||+......+
T Consensus 95 vkc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFE----------------------------------------- 131 (464)
T KOG0284|consen 95 VKCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFE----------------------------------------- 131 (464)
T ss_pred cccceeeEEE--cCCCceeEeecccccEEEecCceeeHH-----------------------------------------
Confidence 3558999999 799999999999999999997442211
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
++.+.|...|+++.|++++.++++| .+|.|++|+.+ ..-++.+ ...|...|
T Consensus 132 --------------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk~~------~ahh~eaI 183 (464)
T KOG0284|consen 132 --------------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVKII------QAHHAEAI 183 (464)
T ss_pred --------------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhHHh------hHhhhhhh
Confidence 1127899999999999999999999 99999999987 3333332 13355899
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
++++|+|+. ..+++++.||+|+|||....+.. +.+.+ |.-.|.+++|+|...+|++++. ..
T Consensus 184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred heeccCCCC-ceeEEecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCce
Confidence 999999988 99999999999999999876533 44455 4788999999999999999986 99
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 349 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 349 (421)
|++||.++ +.++.++.+|...+ ..+.|+|++.+|+++|.|..++++|+++- ....++++|...
T Consensus 246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkd 308 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKD 308 (464)
T ss_pred eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhh
Confidence 99999997 99999999999866 89999999999999999999999999965 678899999999
Q ss_pred ccceeeecCCcccccccceeeeecccCc-ccCCC--C-CccccccccccCeEEEEEccCCCeEEEecC-CceEEEe
Q 014644 350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--S-GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 420 (421)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~-~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~i~~ 420 (421)
+.++.|+|-.. ++|.+|+.||. ..|.. . ........|...|++++|||-|.+||+|+. ..+++|.
T Consensus 309 v~~~~WhP~~~------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 309 VTSLTWHPLNE------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred heeeccccccc------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999843 47999999999 88832 2 333344578999999999999999999994 5588885
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-36 Score=273.37 Aligned_cols=266 Identities=16% Similarity=0.232 Sum_probs=217.8
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
...++|..| ++++.+||.|-.|-.|++|.+...+++++.....-.. +-.++.
T Consensus 378 ~~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~------------------------~d~~sa-- 429 (707)
T KOG0263|consen 378 YQGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSN------------------------IDTESA-- 429 (707)
T ss_pred CCcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhcc------------------------cccccc--
Confidence 457899999 7889999999999999999998765444432111000 000000
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
+....+.|.... ...+.+ .||.++|..+.|+|+.++|+++ .|+++|+|.+.+ ..++-.. .+|..+|+
T Consensus 430 d~~~~~~D~~~~---~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y-------~GH~~PVw 497 (707)
T KOG0263|consen 430 DVDVDMLDDDSS---GTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIY-------KGHLAPVW 497 (707)
T ss_pred chhhhhccccCC---ceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEe-------cCCCccee
Confidence 001222222222 344445 7999999999999999999999 999999999994 4444333 79999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i 270 (421)
.+.|+|.| .++|+++.|++.++|....... .+++.+| .+.|.++.|+|+..|+++|+. .++
T Consensus 498 dV~F~P~G-yYFatas~D~tArLWs~d~~~P----lRifagh-------------lsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 498 DVQFAPRG-YYFATASHDQTARLWSTDHNKP----LRIFAGH-------------LSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred eEEecCCc-eEEEecCCCceeeeeecccCCc----hhhhccc-------------ccccceEEECCcccccccCCCCceE
Confidence 99999999 9999999999999999887443 3777665 889999999999999999976 999
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 350 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 350 (421)
++||..+ +..++.|.+|..++ .+++|||+|++|++|++||.|.+||+.++ .+...+.+|++.+
T Consensus 560 RlWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 560 RLWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTI 622 (707)
T ss_pred EEEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCce
Confidence 9999997 99999999999976 89999999999999999999999999987 7888999999999
Q ss_pred cceeeecCCcccccccceeeeecccCc-ccC
Q 014644 351 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.++.|+.+ +..|++|+.|.. ++|
T Consensus 623 ~SlsFS~d-------g~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 623 YSLSFSRD-------GNVLASGGADNSVRLW 646 (707)
T ss_pred eEEEEecC-------CCEEEecCCCCeEEEE
Confidence 99999988 449999999999 999
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=230.84 Aligned_cols=283 Identities=16% Similarity=0.231 Sum_probs=223.1
Q ss_pred ccccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 28 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 28 ~~~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
+..+|+++|..++| +|. |..||+++.|+.||+|+...+..
T Consensus 9 ~~~gh~~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~~~s------------------------------------- 49 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAW--HPGKGVILASCGTDKAVRIWSTSSGDS------------------------------------- 49 (312)
T ss_pred eecCCCCcEEEEEe--ccCCceEEEeecCCceEEEEecCCCCc-------------------------------------
Confidence 34589999999999 676 88999999999999999875320
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCC
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMD 184 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~ 184 (421)
| .|...+..+|+..|++++|+|.|++|+++ .|.++.||.-.... +++. +++
T Consensus 50 ------------~--------~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~-------~lE 102 (312)
T KOG0645|consen 50 ------------W--------TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA-------TLE 102 (312)
T ss_pred ------------E--------EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe-------eee
Confidence 0 34444447899999999999999999999 99999999876221 3333 459
Q ss_pred ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
+|...|.|++|+++| ++||+++.|+.|-||.+..+... ....++ ..|...|..+.|+|...+|++
T Consensus 103 GHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-ec~aVL-------------~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 103 GHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-ECIAVL-------------QEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred ccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-EEEeee-------------ccccccccEEEEcCCcceeEE
Confidence 999999999999999 99999999999999998854321 112333 445889999999999999999
Q ss_pred ecC-CeEEEEECCC--CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 265 RDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 265 ~~~-~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
++. .+|++|+-.. +-.+++++.+|...+ ++++|+|.|..|+++++|++++||...+.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----- 227 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDGTVSIWRLYTD----- 227 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCcceEeeeeccC-----
Confidence 987 9999998652 246788898888755 89999999999999999999999986533
Q ss_pred EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC----CCccc-----cccccccCeEEEEEccC-CCeEEE
Q 014644 342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS----SGHHE-----LSYNLSSKLLHLAWHPT-TNLIAC 410 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~----~~~~~-----~~~~~~~~v~~~~~spd-~~~la~ 410 (421)
.-..|..++..+.+... .||+++.|+. +++.. .+... .-..|...|++++|.|. .++|++
T Consensus 228 ~~~~~sr~~Y~v~W~~~---------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWDNG---------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred cchhcccceEeeeeccc---------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceee
Confidence 22345667777777732 7999999999 99921 22222 22367889999999995 778888
Q ss_pred ecCCc-eEEEe
Q 014644 411 ANGNS-LFFHY 420 (421)
Q Consensus 411 ~~~~~-~~i~~ 420 (421)
+++|+ +.+|.
T Consensus 299 ~~DDG~v~~W~ 309 (312)
T KOG0645|consen 299 GGDDGIVNFWE 309 (312)
T ss_pred cCCCceEEEEE
Confidence 88655 88885
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=236.72 Aligned_cols=279 Identities=16% Similarity=0.225 Sum_probs=232.3
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
..+|++.|+.++| +|+|.+||+|+.|..|.||++...+
T Consensus 43 l~gh~geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 43 LPGHKGEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred cCCCcceEEEEEE--CCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3589999999999 7899999999999999999976643
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
+...++ ++|++.|..+.|.+|+..|+++ .|.+|+.||++ .++..+ ++.+|.
T Consensus 81 -------------------eN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~r-------k~k~h~ 132 (338)
T KOG0265|consen 81 -------------------ENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIR-------KHKGHT 132 (338)
T ss_pred -------------------cceeee-ccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeee-------hhcccc
Confidence 222334 7999999999999999999998 99999999999 455443 348899
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
.-|.++.-+.-|+.++.+++.|+++++||+|+.... +++.. ...++++.|..++..+.+|.-
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------ceeEEEEEecccccceeeccc
Confidence 999999866667778889999999999999986654 55544 567899999999999998865
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC---CCceeEE
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGITV 343 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~ 343 (421)
+.|++||++. +.....+.+|...+ +.+..+|+|.++.+-+.|.++++||++.. ++.+..+
T Consensus 195 dn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 195 DNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence 9999999996 89999999999876 89999999999999999999999999864 3446777
Q ss_pred ecCCCCc----cceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEecC-Cc
Q 014644 344 EAGKNEN----RKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANG-NS 415 (421)
Q Consensus 344 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~ 415 (421)
++|.... -...|+|+ ...+..|+.|+. .+|+. -..+..+-+|...|.+++|+|..++|.+++. ..
T Consensus 259 ~g~~hnfeknlL~cswsp~-------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPN-------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred ecchhhhhhhcceeeccCC-------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 7775432 34456666 347889999999 99943 3567788899999999999999999998884 45
Q ss_pred eEE
Q 014644 416 LFF 418 (421)
Q Consensus 416 ~~i 418 (421)
||+
T Consensus 332 i~l 334 (338)
T KOG0265|consen 332 IYL 334 (338)
T ss_pred eEe
Confidence 664
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-35 Score=248.84 Aligned_cols=332 Identities=16% Similarity=0.203 Sum_probs=263.7
Q ss_pred ccccccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 28 KSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 28 ~~~~h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
+-+.|+.+|.+.+| +|-.. ++++++.|-+.++|++.... .......+|.- -.+..-.+.++.+.+++++.++.+
T Consensus 173 kvl~~~~~V~~~~W--nP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~-~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 173 KVLRHESEVFICAW--NPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI-REGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred eeccCCCceEEEec--CchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh-hhhcccCCccCCcceEEecCCCCe
Confidence 34569999999999 56544 89999999999999987522 11111111110 011223345678999999999999
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
+++|.. ++.+++|+... ..+.++ ..|.++|.+|.|+.+|++|+++ .|+++.+||.. .+...+.+
T Consensus 250 LatG~~--~G~~riw~~~G----~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~f------- 314 (524)
T KOG0273|consen 250 LATGSE--DGEARIWNKDG----NLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQF------- 314 (524)
T ss_pred EEEeec--CcEEEEEecCc----hhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEee-------
Confidence 999998 78899998765 556677 8999999999999999999999 99999999998 45555443
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
.-|..+-..+.|-.+ ..+++++.|+.|+++.+...++. ..+.+ |.++|.++.|.|.|.+|+
T Consensus 315 ~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t~~G-------------H~g~V~alk~n~tg~LLa 375 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KTFIG-------------HHGEVNALKWNPTGSLLA 375 (524)
T ss_pred eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc----eeeec-------------ccCceEEEEECCCCceEE
Confidence 557777678888876 57999999999999998875543 55555 489999999999999999
Q ss_pred EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC---------CEEEEeeCCCeEEEEec
Q 014644 264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSH 333 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---------~~l~~~s~dg~i~iwd~ 333 (421)
++++ ++++||.+.. ......+.+|...+ ..+.|+|+| ..+++++.|++|++||+
T Consensus 376 S~SdD~TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred EecCCCeeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 9987 9999999975 77788888888765 678888854 57899999999999999
Q ss_pred CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEe
Q 014644 334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACA 411 (421)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~ 411 (421)
..+ .....+..|..+|.+++|+|+ ++ ++|+|+.||. .||. ....+.....-...|..++|+.+|+.|.++
T Consensus 440 ~~g-v~i~~f~kH~~pVysvafS~~--g~-----ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 440 ESG-VPIHTLMKHQEPVYSVAFSPN--GR-----YLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred cCC-ceeEeeccCCCceEEEEecCC--Cc-----EEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence 988 778899999999999999999 44 9999999999 9993 334444444556679999999999887755
Q ss_pred c-CCceEEEe
Q 014644 412 N-GNSLFFHY 420 (421)
Q Consensus 412 ~-~~~~~i~~ 420 (421)
. ++.+++.+
T Consensus 512 ~sd~~vcvld 521 (524)
T KOG0273|consen 512 ASDGSVCVLD 521 (524)
T ss_pred ecCCCceEEE
Confidence 5 55565543
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=264.31 Aligned_cols=343 Identities=15% Similarity=0.149 Sum_probs=267.1
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.|+.+|..++| +|.+.+|++|+.|+.|+|||+..+. ...+.. +++.|+++.|++.... ..+..|.
T Consensus 103 ~He~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG--~gGvVssl~F~~~~~~----------~lL~sg~ 168 (775)
T KOG0319|consen 103 IHEAPVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG--HGGVVSSLLFHPHWNR----------WLLASGA 168 (775)
T ss_pred ccCCCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC--CCceEEEEEeCCccch----------hheeecC
Confidence 49999999999 7889999999999999999999877 333333 5666665555543222 1233332
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCC--------
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-------- 180 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~-------- 180 (421)
.+..+++|+..... .|+.++ ..|...|++++|++|+..++++ .|..+.+||+.. .+..+++++.+
T Consensus 169 --~D~~v~vwnl~~~~--tcl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~vv~l 242 (775)
T KOG0319|consen 169 --TDGTVRVWNLNDKR--TCLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESVVRL 242 (775)
T ss_pred --CCceEEEEEcccCc--hHHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhh-hhhhheechhhheeeEEEe
Confidence 36789999998653 367777 8999999999999999999987 999999999852 11111110000
Q ss_pred --------------------------------------------------------------------------------
Q 014644 181 -------------------------------------------------------------------------------- 180 (421)
Q Consensus 181 -------------------------------------------------------------------------------- 180 (421)
T Consensus 243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ 322 (775)
T KOG0319|consen 243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY 322 (775)
T ss_pred chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence
Q ss_pred ------------------------------------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc-
Q 014644 181 ------------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC- 223 (421)
Q Consensus 181 ------------------------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~- 223 (421)
.-+.+|++.|.++....+| -+|++++.|.++++|.+.++...
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh
Confidence 2246888899999866666 79999999999999988543221
Q ss_pred -------------------------------ccchhhhccccccCC--------CcccccccccceeEEEEcCCCCEEEE
Q 014644 224 -------------------------------DHSARILRDAAESHG--------SKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 224 -------------------------------~~~~~~~~~h~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
+..++.|.. ..... .+.....|...|++++++|+.++||+
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 111222322 11000 01123568889999999999999999
Q ss_pred ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644 265 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 343 (421)
|+. .+.+||++.. ......+.+|...+ +++.|+|..+.++|+|.|++|+||.+.+. ...+++
T Consensus 481 ~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~ 543 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTF 543 (775)
T ss_pred cccccceeeecccC-ceEEEEeeCCccce---------------EEEEeccccceeEeccCCceEEEEEeccc-eeeeee
Confidence 987 9999999984 88999999999865 89999999999999999999999999998 789999
Q ss_pred ecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEE
Q 014644 344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH 419 (421)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~ 419 (421)
.||...|....|-.+ +. .|++++.||. ++| +..+....+-.|...|+.++-+|...++++|+.| .+.+|
T Consensus 544 eGH~~aVlra~F~~~--~~-----qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 544 EGHTSAVLRASFIRN--GK-----QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred cCccceeEeeeeeeC--Cc-----EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999877 44 8999999999 999 6777888888999999999999999999999855 57666
No 16
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-36 Score=245.81 Aligned_cols=393 Identities=43% Similarity=0.675 Sum_probs=289.4
Q ss_pred CCCCceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccc
Q 014644 6 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 85 (421)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~ 85 (421)
..+-||.|.++||+|+++|+|+++++.+++|+.|+|+...+...++.++.|++|++|.+....++.....+..+.+
T Consensus 58 s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~---- 133 (460)
T COG5170 58 SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF---- 133 (460)
T ss_pred ccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc----
Confidence 4567899999999999999999999999999999998655567899999999999999988765554443333211
Q ss_pred ccccccc-eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEE
Q 014644 86 TLLAEKN-FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 164 (421)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lw 164 (421)
+.+.++ +.+. .....+++-.-.......+.+.+...|.-.|+++.|+.|.+.+++++|-.|.+|
T Consensus 134 -~~~~~g~~~s~--------------~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLW 198 (460)
T COG5170 134 -HSPMGGPLTST--------------KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLW 198 (460)
T ss_pred -ccccCCCcCCH--------------HHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeec
Confidence 111110 0000 000122222222222225556666889999999999999999999999999999
Q ss_pred eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccc
Q 014644 165 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244 (421)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 244 (421)
+++.....+.++++||..+..-+.-|++..|+|..++.+...+..|+|++-|+|+..+++...++++. ...+....++.
T Consensus 199 nl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~ 277 (460)
T COG5170 199 NLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFE 277 (460)
T ss_pred cccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHH
Confidence 99988999999999999998888999999999998888999999999999999999988888888887 67777888888
Q ss_pred ccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 324 (421)
Q Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~ 324 (421)
+....|..+.|+++|++|++.+.-+++|||.+....+++++..|......++..|++|+||+-+.+.|+.|.+.+++|+.
T Consensus 278 eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 278 EIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 88899999999999999999988999999999989999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCc----eeEEecCCCCccc---eeeecCCccccc-ccceeeeecccCcccCCCCCccccccccccCe
Q 014644 325 SNLLRIFSHGVGSAG----GITVEAGKNENRK---PILQAAPRARRS-SLSNLTRGLYRQAHENSSSGHHELSYNLSSKL 396 (421)
Q Consensus 325 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v 396 (421)
.+..-|+-..+.+.. +..+..|..+-.. ..-...+..... +--...+.+.+|.-.- ..-...+++...|
T Consensus 358 ~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~i 434 (460)
T COG5170 358 SNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKI 434 (460)
T ss_pred ccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHH
Confidence 998888875543211 1222222211111 000000000000 0000000011110000 0001122345667
Q ss_pred EEEEEccCCCeEEEecCCceEEEeC
Q 014644 397 LHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 397 ~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
...+|||-...+|++..+++++|.+
T Consensus 435 lh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 435 LHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred HhhccCCcccceeeeecCceEEEec
Confidence 8889999999999999999999974
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-34 Score=227.86 Aligned_cols=250 Identities=16% Similarity=0.215 Sum_probs=196.1
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||+-.|+.+.. ++++++.++++.|+++|+||+.+++..+.... |.. .+++.+++++.+.+.+|+
T Consensus 60 ~GHsH~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~------------dVlsva~s~dn~qivSGS 124 (315)
T KOG0279|consen 60 TGHSHFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTK------------DVLSVAFSTDNRQIVSGS 124 (315)
T ss_pred eccceEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEe-cCC------------ceEEEEecCCCceeecCC
Confidence 379999999999 79999999999999999999999874433332 333 456666667777777776
Q ss_pred cccccceeEEeecccceeeeeeeecC-CCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
- +.++++|+.-.. |..+... .|.+.|.|+.|+|+ ..+|+++ .|++|++||++ +-+... .+.+
T Consensus 125 r--DkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~g 190 (315)
T KOG0279|consen 125 R--DKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIG 190 (315)
T ss_pred C--cceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------cccc
Confidence 6 668999998764 4444412 23889999999997 7788988 99999999998 555443 3488
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
|++.++.++++||| .++++|+.||.+.+||++.++.+ ..++. ...|.+++|+|+...|+.+
T Consensus 191 h~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred ccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeec
Confidence 99999999999999 99999999999999999998754 44444 7899999999999888888
Q ss_pred cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
.+..|+|||+.+ +.++..++....... ....+.+. .+++|++||+.|++|-.|+.|++|.+.
T Consensus 252 t~~sIkIwdl~~-~~~v~~l~~d~~g~s----~~~~~~~c--lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATSIKIWDLES-KAVVEELKLDGIGPS----SKAGDPIC--LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceEEEeccc-hhhhhhccccccccc----cccCCcEE--EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877799999986 777666654322210 00011111 689999999999999999999999875
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=251.22 Aligned_cols=318 Identities=14% Similarity=0.162 Sum_probs=255.9
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
.+|++.+| ++...+|++|-..|...|+++.+.. ++.+... +..|....++..+.+++-|+..
T Consensus 266 ~kvtaa~f--H~~t~~lvvgFssG~f~LyelP~f~lih~LSis--------------~~~I~t~~~N~tGDWiA~g~~k- 328 (893)
T KOG0291|consen 266 SKVTAAAF--HKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS--------------DQKILTVSFNSTGDWIAFGCSK- 328 (893)
T ss_pred cceeeeec--cCCceEEEEEecCCeeEEEecCCceEEEEeecc--------------cceeeEEEecccCCEEEEcCCc-
Confidence 78999999 7889999999999999999998877 3333221 2467778888888888888764
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
.+.+-+|+.... .-+... ++|...+.+++++|||+++|+| +||.|+|||.. .+-|+-++ ..|+..|+
T Consensus 329 lgQLlVweWqsE---sYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTF-------teHts~Vt 396 (893)
T KOG0291|consen 329 LGQLLVWEWQSE---SYVLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTF-------TEHTSGVT 396 (893)
T ss_pred cceEEEEEeecc---ceeeec-cccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEe-------ccCCCceE
Confidence 456778877654 445555 8999999999999999999999 99999999998 67777655 88999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN 269 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~ 269 (421)
.+.|+..+ +.+++++.||+|+.||+...+.. +.+.. |. .-...+++..|.|.++.+|+. =.
T Consensus 397 ~v~f~~~g-~~llssSLDGtVRAwDlkRYrNf----RTft~----P~--------p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 397 AVQFTARG-NVLLSSSLDGTVRAWDLKRYRNF----RTFTS----PE--------PIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEEEEecC-CEEEEeecCCeEEeeeeccccee----eeecC----CC--------ceeeeEEEEcCCCCEEEeeccceEE
Confidence 99999999 99999999999999999876543 44443 11 234678899999999998864 68
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 349 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 349 (421)
|.+|++++ |+.+..+.+|++++ .+++|+|.+..|+++|.|.+|++||+-.......++ .+...
T Consensus 460 IfvWS~qT-GqllDiLsGHEgPV---------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sd 522 (893)
T KOG0291|consen 460 IFVWSVQT-GQLLDILSGHEGPV---------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSD 522 (893)
T ss_pred EEEEEeec-CeeeehhcCCCCcc---------------eeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccc
Confidence 99999998 99999999999987 789999999999999999999999997653333333 45677
Q ss_pred ccceeeecCCcccccccceeeeecccCc-ccCCCCCccc----------------------cccccccCeEEEEEccCCC
Q 014644 350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE----------------------LSYNLSSKLLHLAWHPTTN 406 (421)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~----------------------~~~~~~~~v~~~~~spd~~ 406 (421)
+..+.|.|+ |+ -||...-||. .+|+..+... ....-....+.+++++||.
T Consensus 523 vl~vsfrPd--G~-----elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 523 VLAVSFRPD--GK-----ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred eeEEEEcCC--CC-----eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 889999999 44 8999999999 9993321110 0001235788999999999
Q ss_pred eEEEec-CCceEEEeC
Q 014644 407 LIACAN-GNSLFFHYA 421 (421)
Q Consensus 407 ~la~~~-~~~~~i~~~ 421 (421)
.|++|+ .+.+.||++
T Consensus 596 ~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 596 CILAGGESNSICIYDV 611 (893)
T ss_pred EEEecCCcccEEEEEC
Confidence 998888 677999874
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=263.40 Aligned_cols=284 Identities=21% Similarity=0.306 Sum_probs=232.4
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
|...|.++.| +++|+.+++++.|+.+++|+....+.
T Consensus 158 ~~~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------------ 193 (456)
T KOG0266|consen 158 ECPSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------------------------------------------ 193 (456)
T ss_pred ccCceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------------------------------------------
Confidence 3788999999 79999999999999999999855331
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
..++.+ .+|...|++++|+|++++++++ .|++|++||+......++++ .+|...|
T Consensus 194 ----------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-------~gH~~~v 249 (456)
T KOG0266|consen 194 ----------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-------KGHSTYV 249 (456)
T ss_pred ----------------hhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-------cCCCCce
Confidence 012223 6899999999999999999999 99999999996455777765 8999999
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
++++|+|++ +++++|+.|++|++||+++++.. +.+.. |...|++++|++++.+|++++. +.
T Consensus 250 ~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~~-------------hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 250 TSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLKG-------------HSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred EEEEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeeec-------------cCCceEEEEECCCCCEEEEcCCCcc
Confidence 999999999 99999999999999999996654 55555 4889999999999999999975 99
Q ss_pred EEEEECCCCCc--ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 270 LKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 270 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
|++||+.+ +. ++..+..+.... . +..++|+|+++++++++.|+.+++||+..+ .....+.+|.
T Consensus 312 i~vwd~~~-~~~~~~~~~~~~~~~~-~------------~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~ 376 (456)
T KOG0266|consen 312 IRVWDLET-GSKLCLKLLSGAENSA-P------------VTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHS 376 (456)
T ss_pred EEEEECCC-CceeeeecccCCCCCC-c------------eeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccC
Confidence 99999987 66 456666665541 1 278999999999999999999999999987 6677788887
Q ss_pred CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccccc-ccCeEEEEEccCCCeEEEec---CCceEEEe
Q 014644 348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY 420 (421)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~-~~~v~~~~~spd~~~la~~~---~~~~~i~~ 420 (421)
..+.+. +++.. ......+.+|+.|+. ++| ..++.+....+| ...+..++|+|..+++++++ +..+.+|.
T Consensus 377 ~~~~~~-~~~~~---~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 377 NLVRCI-FSPTL---STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CcceeE-ecccc---cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 764222 22211 111448999999999 999 345666777788 88999999999999999998 55688885
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-34 Score=251.04 Aligned_cols=321 Identities=15% Similarity=0.163 Sum_probs=250.8
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.|+++|.+|.| +|....++++-..|.|.||+.++..+. .+... +..++++.+-....|+..|+
T Consensus 11 ~rSdRVKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------------~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 11 SRSDRVKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------------EVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred ccCCceeeeec--CCCCceEEEeeecCeeEEEecccceeeeeeeec--------------ccchhhheeeeccceEEEec
Confidence 47899999999 899999999999999999999987632 22221 23566666767777888887
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
- +..+++++..+. +.++.| .+|.+-|++++.+|...+++++ +|-+|++||.+..-.+.+++ ++|..
T Consensus 75 D--D~~IrVfnynt~---ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-------eGH~H 141 (794)
T KOG0276|consen 75 D--DMQIRVFNYNTG---EKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-------EGHEH 141 (794)
T ss_pred C--CceEEEEecccc---eeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-------cCcce
Confidence 5 568999999998 999999 9999999999999999999999 99999999999555555554 99999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEec
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD 266 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~ 266 (421)
.|.+++|+|..++.+++++.|++|++|.+.+.... .+++ +|...|+++.+-+-| .+|++|+
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~-------------gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLE-------------GHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeee-------------ccccCcceEEeccCCCcceEEecC
Confidence 99999999998899999999999999999875432 3444 458899999998844 5999998
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
| .+++|||..+ ..+++++.+|...+ ..++|+|.-..+++|++||+++||+..+- .+..++..
T Consensus 205 DD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~ 267 (794)
T KOG0276|consen 205 DDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY 267 (794)
T ss_pred CCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc
Confidence 7 9999999998 99999999999976 78899999999999999999999998876 55555655
Q ss_pred CCCCccceeeecCCcccccccceeeeecccC-------------------cccCCC-CCccc---cccc-----------
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQ-------------------AHENSS-SGHHE---LSYN----------- 391 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~-------------------~~iw~~-~~~~~---~~~~----------- 391 (421)
.-..+.+++..+. ...++.|.+.| +.+|.. ++... ...+
T Consensus 268 gleRvW~I~~~k~-------~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL 340 (794)
T KOG0276|consen 268 GLERVWCIAAHKG-------DGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERL 340 (794)
T ss_pred CCceEEEEeecCC-------CCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccc
Confidence 5566666655443 11344444443 244511 11000 0000
Q ss_pred ---------cccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644 392 ---------LSSKLLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 392 ---------~~~~v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
..--...++.+|+|+.+++++++...||.+
T Consensus 341 ~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa 379 (794)
T KOG0276|consen 341 PLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA 379 (794)
T ss_pred cchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence 011123578999999999999999888854
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-33 Score=249.75 Aligned_cols=335 Identities=14% Similarity=0.186 Sum_probs=246.7
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
.++|-+.|.++.| +.|.++|++||.|-++|||.++..+ +.......|.+.|... -+..+...+.+
T Consensus 141 ~~g~fddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvac------------fF~~~~~~l~t 206 (893)
T KOG0291|consen 141 YLGHFDDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVAC------------FFGANSLDLYT 206 (893)
T ss_pred ecCCccceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEE------------EeccCcceEEE
Confidence 3589999999999 7899999999999999999998766 3344444455544422 22222222222
Q ss_pred cccccccceeEEeeccc-----------------------c-------eeeeeeeecCCCCcceEEEeecCCCCEEEEE-
Q 014644 108 LEWTENMATKIANVGNS-----------------------V-------HARCQKVYPHAHDFNINSISNNSDCETFVSA- 156 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~-----------------------~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~- 156 (421)
.+. ++.+.+|..... . -....+.+.......|++.+|++..+.|++|
T Consensus 207 vsk--dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 207 VSK--DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred Eec--CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 211 333444443300 0 0011122223344667777777777777777
Q ss_pred cCCcEEEEeCCCCceeeeeeecCC------------------------------------CCCCccCCCeeEEEEecCCC
Q 014644 157 DDLRINLWNLEISDQCFNIVDMKP------------------------------------SNMDDLTEVITSAEFHPIYC 200 (421)
Q Consensus 157 ~d~~i~lwd~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~v~~~~~~p~~~ 200 (421)
..|...+|.+. .-.++..+.+.. .+..+|...+.+++++|||
T Consensus 285 ssG~f~LyelP-~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg- 362 (893)
T KOG0291|consen 285 SSGEFGLYELP-DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG- 362 (893)
T ss_pred cCCeeEEEecC-CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-
Confidence 77776677664 222222221110 2347899999999999999
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 279 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~ 279 (421)
+++++|+.||.|++||...+-+. .+|.. |.+.|+.+.|+..|+.+++.+- |+|+.||+.. .
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~----vTFte-------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y 424 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCF----VTFTE-------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y 424 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEE----EEecc-------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecc-c
Confidence 99999999999999999987654 45555 4899999999999999999875 9999999986 7
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC-eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
...+++..+.... ..+++..|.|..+++|+.|. .|++|++++| ++.-.+.||.+||..+.|+|.
T Consensus 425 rNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccc
Confidence 8888887665432 15789999999999999887 6999999998 889999999999999999999
Q ss_pred CcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 359 PRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 359 ~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
+..|++|+-|.+ ++|+.- ....+.+.+...++.++|+|||+.||++. ++.|.||++
T Consensus 490 -------~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 490 -------GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred -------cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 459999999999 999332 22445566778899999999999999999 667999974
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-34 Score=222.00 Aligned_cols=277 Identities=20% Similarity=0.254 Sum_probs=229.8
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|+++|++++| +.+|++.+++++|++||+|+...+
T Consensus 15 ~~qgaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg------------------------------------------- 49 (307)
T KOG0316|consen 15 CAQGAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRG------------------------------------------- 49 (307)
T ss_pred ccccceEEEEE--ccCCCEEEEcCCCceEEeeccccc-------------------------------------------
Confidence 57899999999 899999999999999999997664
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
.+++++ .+|..+|..++.+.|...++++ .|+.+.+||++ .++..+. +.+|.+.
T Consensus 50 -----------------~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv~Rr-------~rgH~aq 103 (307)
T KOG0316|consen 50 -----------------ALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKVDRR-------FRGHLAQ 103 (307)
T ss_pred -----------------ceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCeeeee-------cccccce
Confidence 566777 8999999999999999999998 99999999999 5665553 4899999
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 268 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~ 268 (421)
|..+.|+.+. ..+++|+.|.++++||.++... ++++++.. ....|.++... +..|++|+- |
T Consensus 104 VNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 104 VNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeEEEec--ccEEEeeccCC
Confidence 9999999998 9999999999999999998642 23344443 36788888887 667888764 9
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
+++.||++. ++...-+.+|.- ++++|++|++..+.++-|+++++.|-.++ ++...+.+|.+
T Consensus 166 tvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn 226 (307)
T KOG0316|consen 166 TVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKN 226 (307)
T ss_pred cEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecccchh-HHHHHhccccc
Confidence 999999996 777666655543 79999999999999999999999999988 88889999998
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccCC-CCCccc-cccccccC-eEEEEEccCCCeEEEecCCceEEEe
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHE-LSYNLSSK-LLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~-~~~~~~~~-v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
.-..+..+..+. ...+++|+.||. .+|+ .++.+. ....+... |.++++||.-..|.++...+.++|.
T Consensus 227 ~eykldc~l~qs-----dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 227 MEYKLDCCLNQS-----DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ceeeeeeeeccc-----ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 877776665533 348999999999 9993 333333 33344455 7999999999999999988888885
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=238.91 Aligned_cols=280 Identities=14% Similarity=0.204 Sum_probs=241.2
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
..+|..+|+.+.| +|+-..+++++.|.+|++||..++++
T Consensus 104 l~g~r~~vt~v~~--hp~~~~v~~as~d~tikv~D~~tg~~--------------------------------------- 142 (406)
T KOG0295|consen 104 LAGHRSSVTRVIF--HPSEALVVSASEDATIKVFDTETGEL--------------------------------------- 142 (406)
T ss_pred hhccccceeeeee--ccCceEEEEecCCceEEEEEccchhh---------------------------------------
Confidence 4579999999999 79999999999999999999998752
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.+.+ +||.+.|.+++|+..|++|+++ .|-.+++||..+..++.+. +.+|.
T Consensus 143 ---------------------e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-------~~gh~ 193 (406)
T KOG0295|consen 143 ---------------------ERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-------LIGHE 193 (406)
T ss_pred ---------------------hhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-------hcCcc
Confidence 2334 8999999999999999999999 8988999999844455543 47899
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
..|.+++|-|.| .+|++++.|.+|+.|++.++-.. +.+.+| ...|..++.+.||.++++++.
T Consensus 194 h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~h-------------~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 194 HGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPGH-------------SEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred cceeeEEEEecC-CeeeecccccceeEEecccceeE----EeccCc-------------hHhEEEEEecCCeeEEEecCC
Confidence 999999999999 99999999999999999998755 666664 789999999999999999976
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---------------CCCEEEEeeCCCeEEEE
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---------------DGLHFATGSYSNLLRIF 331 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---------------~~~~l~~~s~dg~i~iw 331 (421)
.++++|-+.+ +++...++.|+.++ -+++|.| .++++.+++.|++|++|
T Consensus 256 dqtl~vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 256 DQTLRVWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred CceEEEEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9999999987 87777888888876 3444443 13689999999999999
Q ss_pred ecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeE
Q 014644 332 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLI 408 (421)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~l 408 (421)
|+.++ ..+.++.+|.+.|+.++|+|. |+ +|++..+|+. ++| .....+...-.|..-|+++.|+.+.+++
T Consensus 320 dv~tg-~cL~tL~ghdnwVr~~af~p~--Gk-----yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 320 DVSTG-MCLFTLVGHDNWVRGVAFSPG--GK-----YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred eccCC-eEEEEEecccceeeeeEEcCC--Ce-----EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 99998 889999999999999999998 55 9999999999 999 4445566666889999999999999999
Q ss_pred EEec-CCceEEEe
Q 014644 409 ACAN-GNSLFFHY 420 (421)
Q Consensus 409 a~~~-~~~~~i~~ 420 (421)
++|+ +-...+|.
T Consensus 392 vTGsVdqt~KvwE 404 (406)
T KOG0295|consen 392 VTGSVDQTVKVWE 404 (406)
T ss_pred Eeccccceeeeee
Confidence 9999 55577773
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.7e-35 Score=264.10 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=213.1
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCcee--------eeee------------ecC----CCC
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--------FNIV------------DMK----PSN 182 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~--------~~~~------------~~~----~~~ 182 (421)
-|.-++ ..-...++|..|++|+..||.| .|..|++|.+.. .++ +..+ +.. ..+
T Consensus 369 ic~YT~-~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p-~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 369 ICMYTF-HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTP-KKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EEEEEE-EEcCCcceeEeecCCcchhhccccccEEEEEecch-hhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 445555 3445679999999999999999 999999999873 111 1111 000 034
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
+.+|.++|+++.|+|+. ++|+++|.|+++|+|.+++.... -.+.+ |..+|..+.|+|-|-|+
T Consensus 447 L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~----V~y~G-------------H~~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCL----VIYKG-------------HLAPVWDVQFAPRGYYF 508 (707)
T ss_pred eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeE----EEecC-------------CCcceeeEEecCCceEE
Confidence 67999999999999998 99999999999999999987644 34444 58999999999999999
Q ss_pred EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
|+++. ++.++|.... ..+++.+.+|-..+ .++.|+|++.|+++||.|.++|+||+.++ ..++
T Consensus 509 atas~D~tArLWs~d~-~~PlRifaghlsDV---------------~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VR 571 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDH-NKPLRIFAGHLSDV---------------DCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVR 571 (707)
T ss_pred EecCCCceeeeeeccc-CCchhhhccccccc---------------ceEEECCcccccccCCCCceEEEEEcCCC-cEEE
Confidence 99976 9999999986 88999999998754 78999999999999999999999999998 7799
Q ss_pred EEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644 342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF 417 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~ 417 (421)
.+.||.++|.+++|+|. |+ +|++|+.|+. ++| ..+.++....+|++.|.++.|+.||..||+|+ ++.++
T Consensus 572 iF~GH~~~V~al~~Sp~--Gr-----~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPC--GR-----YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred EecCCCCceEEEEEcCC--Cc-----eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence 99999999999999998 66 9999999999 999 45567888899999999999999999999999 66799
Q ss_pred EEeC
Q 014644 418 FHYA 421 (421)
Q Consensus 418 i~~~ 421 (421)
+|+.
T Consensus 645 lWD~ 648 (707)
T KOG0263|consen 645 LWDL 648 (707)
T ss_pred EEEc
Confidence 9974
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-33 Score=221.54 Aligned_cols=264 Identities=12% Similarity=0.136 Sum_probs=216.7
Q ss_pred eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCce-eeeeeecCCC
Q 014644 103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-CFNIVDMKPS 181 (421)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~-~~~~~~~~~~ 181 (421)
..+++.+. +.++|+|...++ .|.+++ +.....|+.|...|+++.||++..-.||+||++++.. .+..
T Consensus 11 viLvsA~Y--DhTIRfWqa~tG---~C~rTi-qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t------ 78 (311)
T KOG0315|consen 11 VILVSAGY--DHTIRFWQALTG---ICSRTI-QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT------ 78 (311)
T ss_pred eEEEeccC--cceeeeeehhcC---eEEEEE-ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE------
Confidence 34444444 568999999998 999999 6667889999999999999999778999999996554 4443
Q ss_pred CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
+.+|+..|+++.|..+| +.+++|++||+++|||+|..... +.++. ..+|+++..+|+...
T Consensus 79 -~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~q----R~~~~--------------~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 79 -FEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQ----RNYQH--------------NSPVNTVVLHPNQTE 138 (311)
T ss_pred -EeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccc----hhccC--------------CCCcceEEecCCcce
Confidence 48999999999999999 99999999999999999985433 44444 689999999999999
Q ss_pred EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC---
Q 014644 262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--- 337 (421)
Q Consensus 262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--- 337 (421)
|++++. |.|++||+.. ..+...+..... . .+.++...|||.+|+.+...|..++|++-+..
T Consensus 139 Lis~dqsg~irvWDl~~-~~c~~~liPe~~-~-------------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE-NSCTHELIPEDD-T-------------SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred EEeecCCCcEEEEEccC-CccccccCCCCC-c-------------ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 999987 9999999985 544444332222 1 23799999999999999999999999987642
Q ss_pred --CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc---cccccccccCeEEEEEccCCCeEEEe
Q 014644 338 --AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKLLHLAWHPTTNLIACA 411 (421)
Q Consensus 338 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~---~~~~~~~~~~v~~~~~spd~~~la~~ 411 (421)
..+..+++|...+....++|+ + .+|++.+.|.. +||+.+.. ...+.+|...+++++||.||.+|++|
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd--~-----k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPD--V-----KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred cceEhhheecccceEEEEEECCC--C-----cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 235568899999999999999 4 49999999999 99955543 33456888999999999999999999
Q ss_pred cC-CceEEEe
Q 014644 412 NG-NSLFFHY 420 (421)
Q Consensus 412 ~~-~~~~i~~ 420 (421)
+. +..++|+
T Consensus 277 ssd~~~rlW~ 286 (311)
T KOG0315|consen 277 SSDHTARLWD 286 (311)
T ss_pred CCCCceeecc
Confidence 94 5588886
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-32 Score=233.07 Aligned_cols=352 Identities=16% Similarity=0.170 Sum_probs=250.7
Q ss_pred CCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEee-ecCCCCCcccccccccccceeeccC
Q 014644 22 PEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIK-EMDHFPFVSSENTLLAEKNFMNEHN 98 (421)
Q Consensus 22 ~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 98 (421)
|.|.+-.+. .|..-|+|++| +|||+++++++.||+|.+||=.+++ +..+. ...|.+ .|+++++
T Consensus 178 PPFKFk~s~r~HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG------------sIfalsW 243 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG------------SIFALSW 243 (603)
T ss_pred CCeeeeecccccccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc------------cEEEEEE
Confidence 334444444 47778999999 7999999999999999999988887 33343 223444 5555555
Q ss_pred CCCceeeeecccccccceeEEeecccc----------------------------------------eeeeeeeecCCCC
Q 014644 99 PPSFAHGYHLEWTENMATKIANVGNSV----------------------------------------HARCQKVYPHAHD 138 (421)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~h~ 138 (421)
+|+.+.+++.+. +..+++|++.+.. ...+++.+ .||.
T Consensus 244 sPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-~GHn 320 (603)
T KOG0318|consen 244 SPDSTQFLTVSA--DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-SGHN 320 (603)
T ss_pred CCCCceEEEecC--CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-cccc
Confidence 555555555444 3345555544320 01233355 7999
Q ss_pred cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
..|++|..+|++++|.+| .||.|.-|+... +..-+.. -.+|...|.+++-+..+ .+++.+.|.++++.++
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~------g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLA------GKGHTNQIKGMAASESG--ELFTIGWDDTLRVISL 391 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccc------cccccceEEEEeecCCC--cEEEEecCCeEEEEec
Confidence 999999999999999999 999999999983 4333221 16799999999887754 5888999999999988
Q ss_pred Ccccccccchhhhcccc-----ccCC---------Cccccc--------ccccceeEEEEcCCCCEEEEecC-CeEEEEE
Q 014644 218 RQSALCDHSARILRDAA-----ESHG---------SKSFFT--------EIIASISDIKFANDGQHLLSRDY-MNLKLWD 274 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~-----~~~~---------~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d 274 (421)
..........-.+...+ ..+. ...++. ...-...+++++|++..++.|.+ +.|+||.
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence 65433211100000000 0000 000011 11234678999999999999876 9999999
Q ss_pred CCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccce
Q 014644 275 IRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 353 (421)
Q Consensus 275 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 353 (421)
+.... ........|...+ +.+++|||+.+||+|...+.+.+||+.+.........-|+..+.++
T Consensus 472 l~g~~l~ee~~~~~h~a~i---------------T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAI---------------TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred ecCCcccceeeeecccCCc---------------eEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 97422 2233444566654 7999999999999999999999999998866666777899999999
Q ss_pred eeecCCcccccccceeeeecccCc-ccCCCCC---ccccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644 354 ILQAAPRARRSSLSNLTRGLYRQA-HENSSSG---HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~---~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
+|+|+ ..++|+|+-|.. .+|.... .+...-.|...|+.+.|--+..++-+|.+-++++|+.
T Consensus 537 aWsP~-------n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 537 AWSPN-------NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EeCCC-------ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 99999 459999999999 9994443 3334447888899999998888777777889999974
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=241.80 Aligned_cols=281 Identities=21% Similarity=0.335 Sum_probs=230.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
-+|+..|+++.|+| ..+.+|++++.|+.|+||++....
T Consensus 211 ~gH~kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~----------------------------------------- 248 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR----------------------------------------- 248 (503)
T ss_pred cCCccccchhhhcc-ceeeEEEecCCCceEEEEEEecCc-----------------------------------------
Confidence 48999999999963 368999999999999999987633
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.|+++| .+|..+|.+++|+++|..++++ .|+.|++||++ .+++...+. ...
T Consensus 249 ------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~~~~~f~--------~~~ 300 (503)
T KOG0282|consen 249 ------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQVLSRFH--------LDK 300 (503)
T ss_pred ------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cceEEEEEe--------cCC
Confidence 788888 9999999999999999999998 99999999999 566655441 235
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.++|+.|+|++++.+++|+.|+.|+.||+|+++.. +.+..| -+.|..+.|-++|+++++.++
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~h-------------Lg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDRH-------------LGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHhh-------------hhheeeeEEccCCceEeeeccC
Confidence 68899999999899999999999999999998765 666664 789999999999999999987
Q ss_pred CeEEEEECCCCCcceeEEeec-cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC--CceeEEe
Q 014644 268 MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AGGITVE 344 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~ 344 (421)
+.++||+.+. ..+++....+ .... .++..+|++.+++.-+.|+.|.++.+...- .....+.
T Consensus 364 ks~riWe~~~-~v~ik~i~~~~~hsm---------------P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 364 KSVRIWENRI-PVPIKNIADPEMHTM---------------PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred ccEEEEEcCC-CccchhhcchhhccC---------------cceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence 9999999986 4444332211 1111 578999999999999999999999976542 3356788
Q ss_pred cCCCCc--cceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-eEEEec-CCceE
Q 014644 345 AGKNEN--RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLF 417 (421)
Q Consensus 345 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-~~~~~ 417 (421)
+|..+- -.+.|+|+ |+ +|++|+.+|. .+| ....++.....|...+..+.|||..+ .+|+++ ++.|.
T Consensus 428 Gh~vaGys~~v~fSpD--G~-----~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPD--GR-----TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred ceeccCceeeEEEcCC--CC-----eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 887654 45678888 44 9999999999 898 55567777888999999999999964 466666 67799
Q ss_pred EEe
Q 014644 418 FHY 420 (421)
Q Consensus 418 i~~ 420 (421)
+|+
T Consensus 501 iwd 503 (503)
T KOG0282|consen 501 IWD 503 (503)
T ss_pred ecC
Confidence 995
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=234.51 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=215.0
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
...|.|+.+ |...+++|..|++|+|||..+-
T Consensus 197 skgVYClQY----DD~kiVSGlrDnTikiWD~n~~--------------------------------------------- 227 (499)
T KOG0281|consen 197 SKGVYCLQY----DDEKIVSGLRDNTIKIWDKNSL--------------------------------------------- 227 (499)
T ss_pred CCceEEEEe----cchhhhcccccCceEEeccccH---------------------------------------------
Confidence 356888887 4567899999999999997763
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
.|++.+ .||++.|.|+.|. .+.|++| .|.+|++||++ ++++++++ -.|...|.
T Consensus 228 ---------------~c~~~L-~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~tl-------ihHceaVL 281 (499)
T KOG0281|consen 228 ---------------ECLKIL-TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNTL-------IHHCEAVL 281 (499)
T ss_pred ---------------HHHHhh-hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhHH-------hhhcceeE
Confidence 556666 8999999999995 6699999 99999999999 67777654 78999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i 270 (421)
.+.|+. .++++++.|.++++||+..... ....+++ .+|...|+.+.|+ .++|++++. .+|
T Consensus 282 hlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVL-------------vGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 282 HLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVL-------------VGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred EEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHH-------------hhhhhheeeeccc--cceEEEecCCceE
Confidence 999984 6899999999999999988652 1122333 4458999999997 569998865 999
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 350 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 350 (421)
++|++.+ .+.+.++.+|...+ .++ --.++++++||.|.+|++||+..| .....++||..-|
T Consensus 343 kvW~~st-~efvRtl~gHkRGI---------------ACl--QYr~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLv 403 (499)
T KOG0281|consen 343 KVWSTST-CEFVRTLNGHKRGI---------------ACL--QYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELV 403 (499)
T ss_pred EEEeccc-eeeehhhhcccccc---------------eeh--hccCeEEEecCCCceEEEEecccc-HHHHHHhchHHhh
Confidence 9999987 99999999998754 233 347999999999999999999998 8899999999999
Q ss_pred cceeeecCCcccccccceeeeecccCc-ccCCCC--C---------ccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644 351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~---------~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i 418 (421)
+++.|... .+++|+.||+ ++|+.. . .+.....|++.|..+.|..- +++++.-++.|.|
T Consensus 404 RciRFd~k---------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILi 473 (499)
T KOG0281|consen 404 RCIRFDNK---------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILI 473 (499)
T ss_pred hheeecCc---------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEE
Confidence 99999866 7999999999 999322 1 22344578889999998532 3444444899999
Q ss_pred Ee
Q 014644 419 HY 420 (421)
Q Consensus 419 ~~ 420 (421)
|+
T Consensus 474 Wd 475 (499)
T KOG0281|consen 474 WD 475 (499)
T ss_pred EE
Confidence 97
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-31 Score=236.85 Aligned_cols=277 Identities=20% Similarity=0.318 Sum_probs=226.7
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
+|.++|++++| ++++++|++++.||.|++|++.+++.
T Consensus 7 ~h~~~i~~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~----------------------------------------- 43 (289)
T cd00200 7 GHTGGVTCVAF--SPDGKLLATGSGDGTIKVWDLETGEL----------------------------------------- 43 (289)
T ss_pred ccCCCEEEEEE--cCCCCEEEEeecCcEEEEEEeeCCCc-----------------------------------------
Confidence 78999999999 68899999999999999999887531
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
...+ ..|...+..+.|+|++++|+++ .|+.|++|++. ..+....+ ..|...
T Consensus 44 -------------------~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~~~~-------~~~~~~ 95 (289)
T cd00200 44 -------------------LRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECVRTL-------TGHTSY 95 (289)
T ss_pred -------------------EEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccceEEE-------eccCCc
Confidence 1122 5677888999999999999998 89999999998 43344333 567789
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CC
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 268 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 268 (421)
+.++.|+|++ .++++++.|+.|++||+++++.. ..+.. |...+.+++|+|++.++++++ ++
T Consensus 96 i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 96 VSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLRG-------------HTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEecc-------------CCCcEEEEEEcCcCCEEEEEcCCC
Confidence 9999999997 88888888999999999865433 22223 367899999999999999988 59
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
.|++||++. ++.+..+..+...+ .+++|+|+++.+++++.+|.|++||+..+ .....+..|..
T Consensus 158 ~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~ 220 (289)
T cd00200 158 TIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHEN 220 (289)
T ss_pred cEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCC
Confidence 999999986 77777777766544 78999999999999999999999999876 56667778888
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.+..+.+.++ +. ++++++.++. ++|+. +........+...|.+++|+|+++.|++++ ++.+.+|+
T Consensus 221 ~i~~~~~~~~--~~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPD--GY-----LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCC--Cc-----EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999987 33 7888887888 99943 344455557788999999999999999988 45699985
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=226.50 Aligned_cols=244 Identities=17% Similarity=0.243 Sum_probs=204.5
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
-.+|.+.|.||++ .|...+|++|+.|++++|||+.+++++.... .|.+ .+..+.+++...|+..+
T Consensus 147 i~gHlgWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~------------~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 147 ISGHLGWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIE------------TVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhccceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEeec-chhh------------eeeeeeecccCceEEEe
Confidence 3589999999999 7889999999999999999999998654432 2333 34445556666666665
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.. +..++-||++.. +.++.| .||-..|.|++.+|.-..|++| .|.++++||++ ....+.+ +.+|.
T Consensus 212 ge--dk~VKCwDLe~n---kvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~-------l~GH~ 277 (460)
T KOG0285|consen 212 GE--DKQVKCWDLEYN---KVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHV-------LSGHT 277 (460)
T ss_pred cC--CCeeEEEechhh---hhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEE-------ecCCC
Confidence 54 678999999998 999999 9999999999999999999999 99999999999 4555544 38999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
.+|.++.+.|.. ..+++||.|++|++||++.++.. ..+ ..|...+.+++.+|....+|+++.
T Consensus 278 ~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 278 NPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred CcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccceeeEEecCCchhhhhccCC
Confidence 999999999988 78999999999999999998643 222 334789999999999989999887
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
..|+.|++.. +..+..+.+|...+ .+++...|+ ++++|+++|.|.+||.+++
T Consensus 340 dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 340 DNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 8999999975 88888888888765 677777665 6789999999999999987
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-31 Score=265.64 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=218.1
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|...|.+++| ++++++||+|+.|++|+||++........ . .+
T Consensus 481 ~~~~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~-~--~~-------------------------------- 523 (793)
T PLN00181 481 NSSNLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGR-D--IH-------------------------------- 523 (793)
T ss_pred CCCCcEEEEEE--CCCCCEEEEEeCCCEEEEEECCccccccc-c--cc--------------------------------
Confidence 48999999999 78999999999999999999764210000 0 00
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.+...+ .+...|.+++|++ ++.+|+++ .|++|++||+. .++.+..+ .+|..
T Consensus 524 -----------------~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~~~~~~-------~~H~~ 576 (793)
T PLN00181 524 -----------------YPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA-RSQLVTEM-------KEHEK 576 (793)
T ss_pred -----------------cceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-------cCCCC
Confidence 111112 2345789999987 47889998 99999999998 45555443 78999
Q ss_pred CeeEEEEec-CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc-CCCCEEEEec
Q 014644 189 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD 266 (421)
Q Consensus 189 ~v~~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 266 (421)
.|++++|+| ++ .+|++|+.|++|++||++++... ..+.. ...+.++.|+ ++|.+|++|+
T Consensus 577 ~V~~l~~~p~~~-~~L~Sgs~Dg~v~iWd~~~~~~~----~~~~~--------------~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 577 RVWSIDYSSADP-TLLASGSDDGSVKLWSINQGVSI----GTIKT--------------KANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred CEEEEEEcCCCC-CEEEEEcCCCEEEEEECCCCcEE----EEEec--------------CCCeEEEEEeCCCCCEEEEEe
Confidence 999999997 55 89999999999999999876533 22222 3468899995 5799999987
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-----CCce
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGG 340 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-----~~~~ 340 (421)
. +.|++||++....++..+.+|...+ ..+.|. ++.+|++++.|+.|++||+... ....
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V---------------~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTV---------------SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCE---------------EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 6 9999999986444667777787654 688897 6789999999999999999753 1346
Q ss_pred eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc--cc-------------cccccccCeEEEEEccC
Q 014644 341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HE-------------LSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~--~~-------------~~~~~~~~v~~~~~spd 404 (421)
..+.+|...+..+.++++ ..+|++|+.|+. .+|..... .. ....+...|.+++|+|+
T Consensus 702 ~~~~gh~~~i~~v~~s~~-------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVS-------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEEcCCCCCeeEEEEcCC-------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 788899999999999988 348999999999 99943211 10 01234557999999999
Q ss_pred CCeEEEec-CCceEEEe
Q 014644 405 TNLIACAN-GNSLFFHY 420 (421)
Q Consensus 405 ~~~la~~~-~~~~~i~~ 420 (421)
++.|++|+ ++.|.||+
T Consensus 775 ~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 775 SSTLVAANSTGNIKILE 791 (793)
T ss_pred CCeEEEecCCCcEEEEe
Confidence 99999998 56799996
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=232.16 Aligned_cols=285 Identities=14% Similarity=0.169 Sum_probs=225.8
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eE-EeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
..|+++|.-+.| +++|++||+++.|.+..+|++.... ++ ......|..+|.-+.|+|.+..++++..
T Consensus 221 ~~htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~--------- 289 (519)
T KOG0293|consen 221 QDHTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF--------- 289 (519)
T ss_pred hhCCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---------
Confidence 479999999999 7999999999999999999965443 22 2222345555555555555555544444
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc-
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD- 185 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~- 185 (421)
...+.+||+.++ .+...+..+|...+.+++|.|||..+++| .|+++..||++ +...... ++
T Consensus 290 -----~e~~~lwDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W-------~gv 352 (519)
T KOG0293|consen 290 -----DEVLSLWDVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNW-------EGV 352 (519)
T ss_pred -----hHheeeccCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhcc-------ccc
Confidence 334799999998 88888867778999999999999999999 99999999998 3333221 22
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
....|.+++.++|| +.+++...|..|++++..+.... ..... ..+++++..|.|++++++.
T Consensus 353 r~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 353 RDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVN 413 (519)
T ss_pred ccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEE
Confidence 22568999999999 99999999999999998764321 23344 5789999999999999987
Q ss_pred cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644 266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 343 (421)
-. ..+++||++ +...+..+.||...... ..-||.- +..++++||+|+.|+||+..++ .+..++
T Consensus 414 L~~qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~L 478 (519)
T KOG0293|consen 414 LQDQEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVL 478 (519)
T ss_pred cccCeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEee
Confidence 54 899999998 58888999998875422 2446654 5689999999999999999988 889999
Q ss_pred ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644 344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 382 (421)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~ 382 (421)
.||...|+.+++.|..+ .+||++++||+ +||..
T Consensus 479 sGHs~~vNcVswNP~~p------~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP------EMFASASDDGTIRIWGP 512 (519)
T ss_pred cCCcceeeEEecCCCCH------HHhhccCCCCeEEEecC
Confidence 99999999999999853 37999999999 99943
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.4e-32 Score=216.96 Aligned_cols=249 Identities=14% Similarity=0.163 Sum_probs=204.2
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
+..+++ ++|.+.|.++.|++|.+.|+++ .||.+.|||.-+. .....+ +-....|..++|+|.+ +++++|
T Consensus 46 ~~rr~L-kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~hai-------pl~s~WVMtCA~sPSg-~~VAcG 115 (343)
T KOG0286|consen 46 RTRRTL-KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAI-------PLPSSWVMTCAYSPSG-NFVACG 115 (343)
T ss_pred eeEEEe-cccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEE-------ecCceeEEEEEECCCC-CeEEec
Confidence 455777 9999999999999999999999 9999999999844 444444 3456889999999999 999999
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~ 286 (421)
+.|....||++...... . .......+.+|.+.+.++.|-+|+..|-+.+|.++-+||+++ ++.+..|.
T Consensus 116 GLdN~Csiy~ls~~d~~-g----------~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~-g~~~~~f~ 183 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAE-G----------NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET-GQQTQVFH 183 (343)
T ss_pred CcCceeEEEeccccccc-c----------cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc-ceEEEEec
Confidence 99999999999864211 0 001112256679999999999876544444569999999997 99999999
Q ss_pred eccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
+|...+ .+++++| +++.+++|+-|+..++||++.+ ...+.+.+|...|+++.|.|+
T Consensus 184 GH~gDV---------------~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~------- 240 (343)
T KOG0286|consen 184 GHTGDV---------------MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPS------- 240 (343)
T ss_pred CCcccE---------------EEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccC-------
Confidence 999854 8999999 8999999999999999999998 889999999999999999999
Q ss_pred cceeeeecccCc-ccC--CCCCccc--cccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 366 LSNLTRGLYRQA-HEN--SSSGHHE--LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 366 ~~~l~~g~~d~~-~iw--~~~~~~~--~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
+..+++|++|+. +++ ..+..+. ........|++++||..|++|.+|. +.++.+|++
T Consensus 241 G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 241 GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 448999999999 999 3322222 2223356899999999999999987 567999974
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=235.57 Aligned_cols=257 Identities=18% Similarity=0.268 Sum_probs=213.5
Q ss_pred CCceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccc
Q 014644 8 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 87 (421)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~ 87 (421)
.|||.++.... . .|+. ....|.++|.+++| ++++.++++|+.+|.||+|+..-..
T Consensus 117 SGEFtLWNg~~-f--nFEt-ilQaHDs~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnn------------------- 171 (464)
T KOG0284|consen 117 SGEFTLWNGTS-F--NFET-ILQAHDSPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNN------------------- 171 (464)
T ss_pred cccEEEecCce-e--eHHH-HhhhhcccceeEEE--ccCCCEEEEcCCCceEEecccchhh-------------------
Confidence 47777776622 1 1222 23589999999999 6899999999999999999975422
Q ss_pred ccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644 88 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 166 (421)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~ 166 (421)
++.+...|...|++++|+|+...++++ +||+|+|||.
T Consensus 172 ------------------------------------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 172 ------------------------------------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred ------------------------------------------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 122213455899999999998899998 9999999998
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 246 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 246 (421)
....+ -+ .+.+|.-.|.++.|+|.. .+|++++.|..|++||.++++.+ ..+.. |
T Consensus 210 ~~~ke-e~-------vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~tlh~-------------H 263 (464)
T KOG0284|consen 210 RMPKE-ER-------VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----ATLHG-------------H 263 (464)
T ss_pred cCCch-hh-------eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchh----hhhhh-------------c
Confidence 84333 22 348999999999999998 99999999999999999998765 44445 4
Q ss_pred ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeC
Q 014644 247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSY 324 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~ 324 (421)
...|..+.|+|++.+|++++. ..++++|+++ -+.+..+++|...+ +++.|+| ...++.+|+.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGS 327 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccC
Confidence 889999999999999999976 9999999996 78888999999865 8999999 4677889999
Q ss_pred CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 325 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 325 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
||.|..|.+.........-.+|...|.++++.|- +..|++|+.|.. +.|
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-------Ghil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-------GHILATGSNDRTVRFW 377 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeecccc-------ceeEeecCCCcceeee
Confidence 9999999998655666667899999999999998 449999999999 999
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.4e-31 Score=219.27 Aligned_cols=330 Identities=11% Similarity=0.027 Sum_probs=256.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
..|++.|.+++. +|+.++++||+.|..-.||++.+++. ......|++ .+.++.++.++.++++|.
T Consensus 61 ~~H~~svFavsl--~P~~~l~aTGGgDD~AflW~~~~ge~-~~eltgHKD------------SVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 61 DKHTDSVFAVSL--HPNNNLVATGGGDDLAFLWDISTGEF-AGELTGHKD------------SVTCCSFSHDGTLLATGD 125 (399)
T ss_pred hhcCCceEEEEe--CCCCceEEecCCCceEEEEEccCCcc-eeEecCCCC------------ceEEEEEccCceEEEecC
Confidence 369999999999 78999999999999999999999982 222233444 688889999999999998
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+ .+.+.+|...++ .....+ .+..+.+.-+.|+|.+..|++| .||.+.+|.+. .+...++ +.+|+.
T Consensus 126 m--sG~v~v~~~stg---~~~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv-------~~Gh~~ 191 (399)
T KOG0296|consen 126 M--SGKVLVFKVSTG---GEQWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKV-------MSGHNS 191 (399)
T ss_pred C--CccEEEEEcccC---ceEEEe-ecccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeE-------ecCCCC
Confidence 8 678999999887 555565 4566778889999999999999 99999999998 4344444 489999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
++++=.|.|+| +.++++..||+|++||+.+++.. ..+.. . ......++.++.++..++.|+.
T Consensus 192 ~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~-----------e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 192 PCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-A-----------EGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred CcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-c-----------ccCcCCccccccccceeEeccCC
Confidence 99999999999 99999999999999999998654 22221 0 0235677888888888888865
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
+.+++-...+ ++.+....+.. +.+. ..+.+.+..|-.+.++..-.+.|+|+-||+|.|||+... ..+..-.|.
T Consensus 255 ~~~~~~~~~s-gKVv~~~n~~~---~~l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he 327 (399)
T KOG0296|consen 255 GVACGVNNGS-GKVVNCNNGTV---PELK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHE 327 (399)
T ss_pred ccEEEEcccc-ceEEEecCCCC---cccc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCC
Confidence 8888887765 66655554200 0000 000111111134555556677899999999999999864 455666788
Q ss_pred CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644 348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 420 (421)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~ 420 (421)
.+|..+.|-+. .+|++++.+|. ++| ..+..+....+|...|.+++.+|+.+++++++++ ..++|.
T Consensus 328 ~~V~~l~w~~t--------~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 328 DGVTKLKWLNT--------DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred CceEEEEEcCc--------chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 88999999873 28999999999 999 7788899999999999999999999999999954 577775
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-32 Score=233.15 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=205.8
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
...|++|+|+.+|..||+| .||.+++|+.. +.+..+ +..|.++|.++.|+..| .+|++++.|+++.+||
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~t-------l~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLIST-------LGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC--chhhhh-------hhccCCceEEEEEcCCC-CEEEeccCCccEEEEe
Confidence 3579999999999999999 99999999997 555543 47899999999999999 9999999999999999
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 296 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
..++... +.+..| ..+...+.|-.+..+..++.++.|+++.+.. ..|+.++.+|...+
T Consensus 305 ~~~g~~~----q~f~~~-------------s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V---- 362 (524)
T KOG0273|consen 305 AHTGTVK----QQFEFH-------------SAPALDVDWQSNDEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEV---- 362 (524)
T ss_pred ccCceEE----Eeeeec-------------cCCccceEEecCceEeecCCCceEEEEEecC-CCcceeeecccCce----
Confidence 9887654 444443 5555778998777666666779999999985 89999999999876
Q ss_pred cccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccc--ccccceeeeecc
Q 014644 297 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR--RSSLSNLTRGLY 374 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~ 374 (421)
..+.|.|.|.+|+++|+|++++||.+... .....+++|...+..+.|+|..++. ...+..+++.+.
T Consensus 363 -----------~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 363 -----------NALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred -----------EEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence 79999999999999999999999998876 7788999999999999999986543 223567899999
Q ss_pred cCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 375 RQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 375 d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
|.. ++| ..+..+..+..|..+|.+++|+|+|++||+|+ ++++.||+.
T Consensus 431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 999 999 45667777789999999999999999999999 677999963
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=222.02 Aligned_cols=294 Identities=13% Similarity=0.154 Sum_probs=243.9
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
++.++-+.|..| +|||++|++|+.||.|.+|+..+|++++-..+...+ .|-.-+..++|++++.+...+++|+
T Consensus 210 Fg~KSh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 210 FGQKSHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----NFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred cccccchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-----ceeecccceEEEeecccHHHhhccC
Confidence 456778899999 799999999999999999999999865544443333 2333456889999999999999998
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
. ++.+++|.+.++ +|++.|.++|+..|+|+.|+.|+..++++ .|.++++.-++ .+++++ .+.+|+.
T Consensus 283 q--DGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsS 349 (508)
T KOG0275|consen 283 Q--DGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSS 349 (508)
T ss_pred c--CCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCccc
Confidence 7 788999999998 99999977999999999999999999998 99999999998 677765 3489999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 267 (421)
.|....|.++| +.+++++.||+|++|+..+.... ..+.. .+...+|+.+..-|. ...++.+..
T Consensus 350 yvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 350 YVNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred cccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcC
Confidence 99999999999 99999999999999999987754 34433 112557888888774 556777765
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 346 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 346 (421)
++++|-++. ++.++.+........ +..+++.+|.|.++++.++|+.++.+.+.++ .+..++..|
T Consensus 414 sntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~Vh 478 (508)
T KOG0275|consen 414 SNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVH 478 (508)
T ss_pred CCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecc
Confidence 899999985 888888865433221 1258899999999999999999999999998 788899999
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
...+-.++..|. -+.||+-+.||. ++|.
T Consensus 479 EkdvIGl~HHPH-------qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPH-------QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcc-------cchhhhhcccchhhhcC
Confidence 988888888888 338999999999 9993
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-32 Score=223.34 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=210.7
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
||++.|.+|+| +..|.++++++.|-.+++||.++..
T Consensus 148 GHt~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------ 183 (406)
T KOG0295|consen 148 GHTDSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------ 183 (406)
T ss_pred ccccceeEEEE--ecCccEEEecCCccchhheeHHHHH------------------------------------------
Confidence 89999999999 6789999999999999999987632
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
+|++.+ .+|...|.++.|-|.|.+|+++ .|.+|+.|++. ++.+++++ .+|...
T Consensus 184 -----------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~-------~~h~ew 237 (406)
T KOG0295|consen 184 -----------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTF-------PGHSEW 237 (406)
T ss_pred -----------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEec-------cCchHh
Confidence 566666 7999999999999999999999 99999999999 67777755 899999
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----------
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----------- 258 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~----------- 258 (421)
|..++.+.|| .++++++.|.+|++|-+.+++.. ..+.. |+.+|.+++|.|.
T Consensus 238 vr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~lR~-------------hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 238 VRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AELRE-------------HEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred EEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hhhhc-------------cccceEEEEecccccCcchhhccC
Confidence 9999999999 99999999999999999987543 44444 4778888888763
Q ss_pred ----CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644 259 ----GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 259 ----~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~ 333 (421)
++++++++. ++|++||+.+ +.++.++.+|..++ .+++|+|.|+||+++.+|+++++||+
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred CCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 257888875 9999999998 99999999999976 89999999999999999999999999
Q ss_pred CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
++. +...++..|..-+.++.|.... .++++|+-|.. ++|
T Consensus 364 ~~~-~cmk~~~ah~hfvt~lDfh~~~-------p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 364 KNL-QCMKTLEAHEHFVTSLDFHKTA-------PYVVTGSVDQTVKVW 403 (406)
T ss_pred ccc-eeeeccCCCcceeEEEecCCCC-------ceEEeccccceeeee
Confidence 998 7788899999999999998773 38999999998 888
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=245.01 Aligned_cols=247 Identities=23% Similarity=0.390 Sum_probs=206.2
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|...|++++| ++++.++++++.|++|+|||+....
T Consensus 200 ~~h~~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~----------------------------------------- 236 (456)
T KOG0266|consen 200 SGHTRGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDG----------------------------------------- 236 (456)
T ss_pred cccccceeeeEE--CCCCcEEEEecCCceEEEeeccCCC-----------------------------------------
Confidence 489999999999 7999999999999999999994432
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.+++++ .+|...|++++|+|+++++++| .|++|++||++ .+++.+.+ .+|..
T Consensus 237 ------------------~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l-------~~hs~ 289 (456)
T KOG0266|consen 237 ------------------RNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKL-------KGHSD 289 (456)
T ss_pred ------------------eEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEee-------eccCC
Confidence 555667 8999999999999999999999 99999999999 57777655 89999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.|.+++|++++ ++|++++.|+.|++||+.++... ..+.+..+ .... +++.+.|+|++++++++..
T Consensus 290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~----------~~~~-~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGA----------ENSA-PVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCC----------CCCC-ceeEEEECCCCcEEEEecCC
Confidence 99999999999 99999999999999999998621 11233331 1112 6899999999999999977
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG- 346 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~- 346 (421)
+.+++||++. +..+..+.+|..... ++ .+...++.++++++|+.|+.|++||+.++ .....+.+|
T Consensus 356 ~~~~~w~l~~-~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~ 421 (456)
T KOG0266|consen 356 RTLKLWDLRS-GKSVGTYTGHSNLVR---------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS 421 (456)
T ss_pred CeEEEEEccC-CcceeeecccCCcce---------eE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC
Confidence 8999999986 888888888876420 11 45666889999999999999999999986 778899999
Q ss_pred CCCccceeeecCCcccccccceeeeec--ccCc-ccCC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGL--YRQA-HENS 381 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~--~d~~-~iw~ 381 (421)
...+..+.+.+. ..++++++ .|+. ++|.
T Consensus 422 ~~~~~~~~~~~~-------~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 422 KAAVSDLSSHPT-------ENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCceeccccCCC-------cCeeeecCcCCCceEEEec
Confidence 888889999888 44777777 5666 8883
No 40
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-31 Score=242.28 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=181.3
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
+|.++|.+++| ++||+|||+||.|+.|+||.+...+...........-...++- +..+.................
T Consensus 265 ah~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~---~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA---NSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh---ccccCcccccccccccccccc
Confidence 79999999999 7999999999999999999987754322211111100000000 000111111110000000000
Q ss_pred cc---ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 111 TE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 111 ~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
.. ...+.+-........++++.| .||.+.|.+|.|+.++ +|+++ .|.+||||++. ...+++++ .|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~F--------~H 408 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKVF--------SH 408 (712)
T ss_pred ccccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeEE--------ec
Confidence 00 001122222222334788888 9999999999999765 77776 99999999999 77888876 59
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
.+.|+|++|+|...+++++|+.||.||||++...+.. ...+. ..-|++++|.|||++.+.|+
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl--------------~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----DWNDL--------------RDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----eehhh--------------hhhheeEEeccCCceEEEEE
Confidence 9999999999977799999999999999999986643 33333 46899999999999999999
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE 344 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 344 (421)
. |.+++|+... .+....+..+....... ... .|+++.|.|. ...|++.+.|..|||+|.++. .++..+.
T Consensus 471 ~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~----~~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfK 541 (712)
T KOG0283|consen 471 FNGYCRFYDTEG-LKLVSDFHIRLHNKKKK----QGK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFK 541 (712)
T ss_pred eccEEEEEEccC-CeEEEeeeEeeccCccc----cCc---eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhc
Confidence 8 9999999974 55544443322111000 000 2378988874 345778899999999999765 4444444
Q ss_pred cC
Q 014644 345 AG 346 (421)
Q Consensus 345 ~~ 346 (421)
|.
T Consensus 542 G~ 543 (712)
T KOG0283|consen 542 GF 543 (712)
T ss_pred cc
Confidence 43
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-29 Score=206.19 Aligned_cols=270 Identities=17% Similarity=0.226 Sum_probs=203.2
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
..+|+++.| +++|.+|++++.|.+++|||..++...+....+.- ++....+......+..++...
T Consensus 14 ~~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-------------G~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-------------GVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred CCceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-------------cccEEEEecCCceEEEccCCC
Confidence 678999999 79999999999999999999999884333322211 122222222222233333333
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
+..++..++.+. +.++.| .||...|.+|+.+|-+..++++ .|++|++||++ ..++.-.+ +...-.
T Consensus 79 d~tIryLsl~dN---kylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~~~p 144 (311)
T KOG1446|consen 79 DDTIRYLSLHDN---KYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLSGRP 144 (311)
T ss_pred CCceEEEEeecC---ceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecCCCc
Confidence 457888888888 999999 9999999999999999999998 99999999999 44444333 122334
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i 270 (421)
.++|.|.| -++|++.....|++||+|.-.. .+...+.. ...-....+.+.|||||++|+.++. +.+
T Consensus 145 i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~ 211 (311)
T KOG1446|consen 145 IAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSI----------TDNDEAEWTDLEFSPDGKSILLSTNASFI 211 (311)
T ss_pred ceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEcc----------CCCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence 57899999 8888888777999999997531 11122222 0122467899999999999998877 999
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-CCCC
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNE 349 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~ 349 (421)
++.|.-. |.....+..+....... .+.+|+||++++++|+.||+|.+|+++++ .....+++ +..+
T Consensus 212 ~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~~~~~ 277 (311)
T KOG1446|consen 212 YLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGPNGGP 277 (311)
T ss_pred EEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCCCCCC
Confidence 9999875 88888888776542111 47899999999999999999999999998 66666766 7899
Q ss_pred ccceeeecC
Q 014644 350 NRKPILQAA 358 (421)
Q Consensus 350 ~~~~~~~~~ 358 (421)
+..+.|.|.
T Consensus 278 ~~~~~fnP~ 286 (311)
T KOG1446|consen 278 VSCVRFNPR 286 (311)
T ss_pred ccccccCCc
Confidence 999999988
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=217.38 Aligned_cols=242 Identities=15% Similarity=0.173 Sum_probs=209.4
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
+..+++ .+|.+.|+|+++.|..+++++| .|++++|||+. .+++..+ +.+|...|..+++++-. .+++++
T Consensus 142 Kl~rVi-~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-tg~Lklt-------ltGhi~~vr~vavS~rH-pYlFs~ 211 (460)
T KOG0285|consen 142 KLYRVI-SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-TGQLKLT-------LTGHIETVRGVAVSKRH-PYLFSA 211 (460)
T ss_pred eehhhh-hhccceEEEEeeCCCceeEEecCCCceeEEEEcc-cCeEEEe-------ecchhheeeeeeecccC-ceEEEe
Confidence 445666 8999999999999999999999 99999999999 5666543 48999999999999998 899999
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~ 285 (421)
+.|+.|+.||+...+.+ +.+.+ |-+.|.+++.+|.-+.|++++. .++++||+++ ...+..+
T Consensus 212 gedk~VKCwDLe~nkvI----R~YhG-------------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l 273 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVI----RHYHG-------------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVL 273 (460)
T ss_pred cCCCeeEEEechhhhhH----HHhcc-------------ccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEe
Confidence 99999999999987654 55555 4789999999999999999865 9999999998 8889999
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.+|...+ .++.+.|-...+++||.|++|++||+..+ +...++..|...+++++..|.
T Consensus 274 ~GH~~~V---------------~~V~~~~~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~------- 330 (460)
T KOG0285|consen 274 SGHTNPV---------------ASVMCQPTDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPK------- 330 (460)
T ss_pred cCCCCcc---------------eeEEeecCCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCc-------
Confidence 9999876 78888886667899999999999999998 778899999999999999988
Q ss_pred cceeeeecccCcccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 366 LSNLTRGLYRQAHEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 366 ~~~l~~g~~d~~~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
...+|+++.|..+-| ..++.+..+.+|..-|+.++.+.|+-+++-+..+.+.+|+
T Consensus 331 e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 331 ENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred hhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence 568999999999888 4556677788999999999999998554444455677775
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.2e-30 Score=217.64 Aligned_cols=297 Identities=16% Similarity=0.204 Sum_probs=227.3
Q ss_pred cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
+..+-|.+-|.+|.- . +..+++|+.||++++||....
T Consensus 99 l~~~~hdDWVSsv~~--~--~~~IltgsYDg~~riWd~~Gk--------------------------------------- 135 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKG--A--SKWILTGSYDGTSRIWDLKGK--------------------------------------- 135 (423)
T ss_pred cccccchhhhhhhcc--c--CceEEEeecCCeeEEEecCCc---------------------------------------
Confidence 345578888888877 2 789999999999999998663
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC---CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
+...+ .||.++|.+++|.- ....++++ .|.++++|.++......+.+ ..
T Consensus 136 ----------------------~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~ 188 (423)
T KOG0313|consen 136 ----------------------SIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KV 188 (423)
T ss_pred ----------------------eEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hH
Confidence 33344 78999999888843 23357777 99999999998544433332 12
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccc---------hhhhccccccCCCcccccccccceeEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---------ARILRDAAESHGSKSFFTEIIASISDI 253 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---------~~~~~~h~~~~~~~~~~~~~~~~v~~~ 253 (421)
..||...|.++...+++ ..+++|+.|.+|.||+..+.. .+.. ....+.......+...+.+|..+|.++
T Consensus 189 ~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred hcccccceeEEEecCCC-CeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 25999999999999999 999999999999999933211 0000 000000011122334578999999999
Q ss_pred EEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644 254 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 332 (421)
Q Consensus 254 ~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd 332 (421)
.|++ ...+.+++. .+|+.||+.+ +.....+.+.... +++..+|..++|++|+.|..|++||
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecC
Confidence 9998 557777765 9999999998 7666666665543 6999999999999999999999999
Q ss_pred cCCCC--CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEEEEEccCCC
Q 014644 333 HGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN 406 (421)
Q Consensus 333 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~~ 406 (421)
-+++. ...+.+.+|.+.|.++.++|.. ...|++|+.|++ ++| .....+..+.+|...|.++.|+.. .
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~------~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~ 401 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTN------EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-G 401 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCC------ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-c
Confidence 98764 3467889999999999999984 347999999999 999 344588899999999999999865 4
Q ss_pred eEEEec-CCceEEEe
Q 014644 407 LIACAN-GNSLFFHY 420 (421)
Q Consensus 407 ~la~~~-~~~~~i~~ 420 (421)
.|++|+ ++.|+||.
T Consensus 402 ~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeccCcceEEEec
Confidence 667777 67799985
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=8.3e-30 Score=229.84 Aligned_cols=340 Identities=11% Similarity=0.041 Sum_probs=260.4
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
++.-..+|.++.|.|++....-+.--.++++.++.++... ... .....+..+.+......+++.+++.+...+.+|
T Consensus 316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~-~~~---p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG-KTS---PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC-CCC---ccccccceeeeccchhheeEEEeecCceeeeec
Confidence 3445678999999877665533333778899999877511 110 011111122222233456666666666666665
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
. +..+++|+..+. +|++++ . .+-+.+..|-|.+++++.| ..|.+.++|+. ....+..+ +.|.
T Consensus 392 a---~~SikiWn~~t~---kciRTi-~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Eti-------~AHd 454 (888)
T KOG0306|consen 392 A---GESIKIWNRDTL---KCIRTI-T--CGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVETI-------RAHD 454 (888)
T ss_pred C---CCcEEEEEccCc---ceeEEe-c--cccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhhh-------hccc
Confidence 4 346899999988 999998 2 3378999999999999999 99999999998 55566544 7899
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc-chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
+.|++++.+||+ ..+++||.|.+|++||+.--..... ..+.+..+ ....-.....|.++.+||||++|+.+-
T Consensus 455 gaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 455 GAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred cceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEeccccEEEEEEcCCCcEEEEEe
Confidence 999999999999 9999999999999999753211000 00111110 000011256899999999999999985
Q ss_pred -CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 267 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 267 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
+.++++|-+++ -+..-.+.||.-++ .++..+||++.++|||.|.+|+||-++-| .+.+.+-+
T Consensus 528 LdnTVkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fA 590 (888)
T KOG0306|consen 528 LDNTVKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFA 590 (888)
T ss_pred ccCeEEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhc
Confidence 49999999987 77777788998876 89999999999999999999999999987 78889999
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
|.+.|..+.|.|. ..++.+++.|+. +-|+. -+.+..+.+|...|++++.+|+|.++++++ +-+|++|.
T Consensus 591 HdDSvm~V~F~P~-------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 591 HDDSVMSVQFLPK-------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ccCceeEEEEccc-------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999997 558999999999 99943 456777889999999999999999999999 56799995
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=203.10 Aligned_cols=273 Identities=18% Similarity=0.278 Sum_probs=218.5
Q ss_pred ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
...+|..+|.+|+| +-+|..|++|+.|+++++|+++......-
T Consensus 15 ~~~~~~~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~----------------------------------- 57 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE----------------------------------- 57 (313)
T ss_pred HhhhhhhcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----------------------------------
Confidence 34578999999999 78999999999999999999987531100
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
..+ .+|.+.|-.++|+| ....++++ .|.+|++||++ .+++...+ ..
T Consensus 58 -----------------------~~~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~~~~i-------~~ 105 (313)
T KOG1407|consen 58 -----------------------LVY-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKCTARI-------ET 105 (313)
T ss_pred -----------------------hcc-cCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcEEEEe-------ec
Confidence 112 78999999999987 46678887 99999999999 45554443 11
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
. ..-.-+.|+|+| .+++.++.|..|.+.|.++.+... ..+- ...+..+.|+.++.+++..
T Consensus 106 ~-~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~----~~~~--------------~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 106 K-GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN----EEQF--------------KFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred c-CcceEEEEcCCC-CEEEEecCcccEEEEEecccceee----hhcc--------------cceeeeeeecCCCCEEEEe
Confidence 2 223457899999 999999999999999999865431 1111 3467888999877777766
Q ss_pred cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644 266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 344 (421)
Q Consensus 266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 344 (421)
+. |.|.|..... -+++..+++|.... .++.|+|+|+++|+|+.|..+.+||++.. ...+.+.
T Consensus 166 ~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is 228 (313)
T KOG1407|consen 166 NGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS 228 (313)
T ss_pred cCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeeccChhHh-hhheeec
Confidence 55 9999999874 88999999998754 68999999999999999999999999876 6688899
Q ss_pred cCCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEecC
Q 014644 345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 413 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~ 413 (421)
.+.-+|+.+.|+-+ |+ +||+|+.|-- .|= ...+.....+.+.++...++|||...+||.+++
T Consensus 229 RldwpVRTlSFS~d--g~-----~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHD--GR-----MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred cccCceEEEEeccC--cc-----eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEec
Confidence 99999999999988 55 9999999977 444 333444556678889999999999999998874
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-30 Score=235.30 Aligned_cols=294 Identities=16% Similarity=0.183 Sum_probs=231.6
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
+..|..++| +|...+++++--.|.|++||.+-+. +.++.. | ++.+..+.+.+...++.+|+-
T Consensus 9 SsRvKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFde--H------------dGpVRgv~FH~~qplFVSGGD- 71 (1202)
T KOG0292|consen 9 SSRVKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--H------------DGPVRGVDFHPTQPLFVSGGD- 71 (1202)
T ss_pred cccccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhhc--c------------CCccceeeecCCCCeEEecCC-
Confidence 567899999 8999999999999999999988765 222222 3 356777777888888888865
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
+..+++|+.... +|+-++ .||-+-|+.+.|++.-.+|+++ +|.+|+||+.. +..++.++ ++|...|
T Consensus 72 -DykIkVWnYk~r---rclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavl-------tGHnHYV 138 (1202)
T KOG0292|consen 72 -DYKIKVWNYKTR---RCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVL-------TGHNHYV 138 (1202)
T ss_pred -ccEEEEEecccc---eehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEE-------ecCceEE
Confidence 568999999988 999999 8999999999999999999999 99999999999 77888776 8999999
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch----hhhccc--------cccCCCcccccccccceeEEEEcCC
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----RILRDA--------AESHGSKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~h--------~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (421)
.|..|+|.. .+++++|.|.+||+||+..-+...... ..+.++ ...-..+..+.+|...|+-++|+|.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999998 899999999999999987532211000 011110 0122345668999999999999999
Q ss_pred CCEEEEecC-CeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 259 GQHLLSRDY-MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 259 ~~~l~~~~~-~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
-.+|++|+| +.|++|.+...+ -.+.+.++|...+ .++-|+|...+|++.++|++|++||+...
T Consensus 218 lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cceEEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccc
Confidence 999999987 999999996311 2356678888876 79999999999999999999999999875
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN 380 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw 380 (421)
...++++...+..+.++..|. +++++.|.+.|..++
T Consensus 283 -t~v~tfrrendRFW~laahP~-------lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 283 -TSVQTFRRENDRFWILAAHPE-------LNLFAAGHDSGMIVF 318 (1202)
T ss_pred -cceeeeeccCCeEEEEEecCC-------cceeeeecCCceEEE
Confidence 556666656666666666665 345555555554333
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=234.17 Aligned_cols=291 Identities=15% Similarity=0.190 Sum_probs=236.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.|-.+.|.+++|. .|+.++||.++..+.+|+++..+...+-+ ..|.+ .+++++...++-++++++
T Consensus 320 vG~ndEI~Dm~~l-G~e~~~laVATNs~~lr~y~~~~~~c~ii--~GH~e------------~vlSL~~~~~g~llat~s 384 (775)
T KOG0319|consen 320 VGYNDEILDMKFL-GPEESHLAVATNSPELRLYTLPTSYCQII--PGHTE------------AVLSLDVWSSGDLLATGS 384 (775)
T ss_pred cCCchhheeeeec-CCccceEEEEeCCCceEEEecCCCceEEE--eCchh------------heeeeeecccCcEEEEec
Confidence 3668899999997 68889999999999999998887664422 22434 455555555667788887
Q ss_pred cccccceeEEeecccc-eeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeec-CCCCCCc
Q 014644 110 WTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDM-KPSNMDD 185 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~-~~~~~~~ 185 (421)
. +..+++|.++... ...|+... .+|++.|.+++++..+ .+|+++ .|+++++|++....+.-..+.+ ...+...
T Consensus 385 K--D~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 385 K--DKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred C--CceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 7 6689999884432 23566677 8999999999997754 577777 9999999999842211111100 0113367
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
|...|.+++.+|+. ++|++||.|++.+||++.+.+.. .++.+ |...+.++.|+|..+.++++
T Consensus 462 HdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~----~vLsG-------------H~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 462 HDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLL----GVLSG-------------HTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred hcccccceEecCCC-ceEEecccccceeeecccCceEE----EEeeC-------------CccceEEEEeccccceeEec
Confidence 99999999999998 99999999999999999965543 44445 58999999999999999998
Q ss_pred cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644 266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 344 (421)
Q Consensus 266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 344 (421)
+. ++|+||.+.+ ..+++++.+|...+ ..+.|-.+|+.|++++.||-|++|++.+. .....+.
T Consensus 524 SgD~TvKIW~is~-fSClkT~eGH~~aV---------------lra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD 586 (775)
T KOG0319|consen 524 SGDKTVKIWSIST-FSCLKTFEGHTSAV---------------LRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLD 586 (775)
T ss_pred cCCceEEEEEecc-ceeeeeecCcccee---------------EeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhh
Confidence 65 9999999997 99999999999876 89999999999999999999999999998 8899999
Q ss_pred cCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
+|.+.|++++.++. ..++++|+.||. .+|
T Consensus 587 ~H~DrvWaL~~~~~-------~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 587 AHNDRVWALSVSPL-------LDMFVTGGGDGRIIFW 616 (775)
T ss_pred hccceeEEEeecCc-------cceeEecCCCeEEEEe
Confidence 99999999999988 558999999999 999
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=227.52 Aligned_cols=274 Identities=15% Similarity=0.143 Sum_probs=227.5
Q ss_pred ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc
Q 014644 92 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 170 (421)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~ 170 (421)
++.++.+.|...++..+-. .+.+.+|+.++. ..++.+ .-..-+|++..|-+.-+++++| +|..|++|+.+ +.
T Consensus 15 RVKsVd~HPtePw~la~Ly--nG~V~IWnyetq---tmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~ 87 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY--NGDVQIWNYETQ---TMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TG 87 (794)
T ss_pred ceeeeecCCCCceEEEeee--cCeeEEEecccc---eeeeee-eecccchhhheeeeccceEEEecCCceEEEEecc-cc
Confidence 4445555555555555554 567899999998 888888 6778899999999999999999 99999999999 56
Q ss_pred eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644 171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 250 (421)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v 250 (421)
+.++.+ +.|.+.|++++.+|.. .+++++|.|-+|++||-..+=.+ .+++++ |...|
T Consensus 88 ekV~~F-------eAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qtfeG-------------H~HyV 143 (794)
T KOG0276|consen 88 EKVKTF-------EAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQTFEG-------------HEHYV 143 (794)
T ss_pred eeeEEe-------eccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeEEcC-------------cceEE
Confidence 666655 8999999999999998 89999999999999998875333 245555 58999
Q ss_pred eEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEEeeCCC
Q 014644 251 SDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSN 326 (421)
Q Consensus 251 ~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg 326 (421)
.+++|.| |...+++++- ++|++|.+.. ..+..++++|+..+ .++++-+. ..+|++|++|.
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCc
Confidence 9999999 5668888875 9999999986 88899999999876 78998874 46999999999
Q ss_pred eEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccc-cccCeEEEEEcc
Q 014644 327 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN-LSSKLLHLAWHP 403 (421)
Q Consensus 327 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~-~~~~v~~~~~sp 403 (421)
+|+|||.++. .+++++.||...|..+.|.|. .+.+++|+.||+ +||.. .-.+..... .-.+|++++-.+
T Consensus 208 tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 208 TIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred eEEEeecchH-HHHHHhhcccccceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 9999999987 889999999999999999999 669999999999 99933 223333322 346899999999
Q ss_pred CCCeEEEecCCceEEEe
Q 014644 404 TTNLIACANGNSLFFHY 420 (421)
Q Consensus 404 d~~~la~~~~~~~~i~~ 420 (421)
.+..+++|.+.+..+.+
T Consensus 280 ~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 280 GDGKIAVGFDEGSVTVK 296 (794)
T ss_pred CCCeEEEeccCCcEEEE
Confidence 99999999987765543
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-29 Score=200.23 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=218.1
Q ss_pred cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
+.-.||+.+++.|+| +.+|.+|++++.|.++.||-..++
T Consensus 4 i~l~GHERplTqiKy--N~eGDLlFscaKD~~~~vw~s~nG--------------------------------------- 42 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNG--------------------------------------- 42 (327)
T ss_pred cccccCccccceEEe--cCCCcEEEEecCCCCceEEEecCC---------------------------------------
Confidence 445689999999999 899999999999999999986555
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
+.+.++ .||++.|+|+....+.+.+++| .|.+++|||++ .++.+..+ .
T Consensus 43 ---------------------erlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la~~--------k 91 (327)
T KOG0643|consen 43 ---------------------ERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLATW--------K 91 (327)
T ss_pred ---------------------ceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEEEe--------e
Confidence 334556 8999999999999999999999 99999999999 55555544 2
Q ss_pred cCCCeeEEEEecCCCCeEEEEE-----cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 186 LTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
...+|..+.|+++| ++++... ..+.|.++|++..... . ....+-..+..+...++.+-|.|-++
T Consensus 92 ~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~------~----~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSD------I----DSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhh------h----cccCceEEecCCccceeeeeecccCC
Confidence 45789999999999 7776665 3468999999854311 0 00011111233467899999999999
Q ss_pred EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
+|++|.+ |.|.+||+++..+.+..-+.|...+ ++++++||..+++++|.|.+-++||+.+. ..
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dttakl~D~~tl-~v 224 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTAKLVDVRTL-EV 224 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccceeeeccce-ee
Confidence 9999976 9999999998446666667777655 79999999999999999999999999976 33
Q ss_pred eeEEecCCCCccceeeecCCcccccccceeeee-cccCcccC----C------------CCCccccccccccCeEEEEEc
Q 014644 340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQAHEN----S------------SSGHHELSYNLSSKLLHLAWH 402 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~d~~~iw----~------------~~~~~~~~~~~~~~v~~~~~s 402 (421)
++++. -.-|+++.+++|.. ..++.| +.+...+- . ..|.+....+|-++|++++||
T Consensus 225 ~Kty~-te~PvN~aaisP~~-------d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 225 LKTYT-TERPVNTAAISPLL-------DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred EEEee-ecccccceeccccc-------ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 33333 34678888888872 244443 33333332 1 124455667899999999999
Q ss_pred cCCCeEEEecCCc-eEEE
Q 014644 403 PTTNLIACANGNS-LFFH 419 (421)
Q Consensus 403 pd~~~la~~~~~~-~~i~ 419 (421)
|||+..++|+.|+ +++.
T Consensus 297 PdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred CCCcccccCCCCceEEEE
Confidence 9999999999554 6553
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-30 Score=206.61 Aligned_cols=253 Identities=18% Similarity=0.205 Sum_probs=205.3
Q ss_pred CCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCC
Q 014644 22 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 101 (421)
Q Consensus 22 ~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 101 (421)
+.+....++.-++.+..|+|++ ...+.+++++.||+++|||....+
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~s--------------------------------- 94 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMPS--------------------------------- 94 (311)
T ss_pred CCeEEEEeeecccceeEeeecC-CCcceEEEEecCceEEEeccCCCC---------------------------------
Confidence 3455566677788999999953 336789999999999999954322
Q ss_pred ceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644 102 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK 179 (421)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~ 179 (421)
.+++.+ +.|..+|.++.|++ +.+.++++ .|++|++|+.. ..+.+.++
T Consensus 95 --------------------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf--- 143 (311)
T KOG0277|consen 95 --------------------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTF--- 143 (311)
T ss_pred --------------------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEee---
Confidence 455666 89999999999998 45566677 99999999998 55666554
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 258 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~- 258 (421)
.+|...|+...|+|..+++++++|.|+++++||++..... ..+.. |...+.++.|+.-
T Consensus 144 ----~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~ 202 (311)
T KOG0277|consen 144 ----NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYN 202 (311)
T ss_pred ----cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccC
Confidence 8999999999999998899999999999999999875322 33555 4779999999985
Q ss_pred CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCC
Q 014644 259 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 259 ~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~ 336 (421)
...+++|+. +.|++||+++-..++..+.+|+..+ +.+.|||- ...|++++.|-+++|||....
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred CcEEEecCCCceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccc
Confidence 455666654 9999999998788888898888765 89999995 567999999999999999877
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
...+.+...|+.-+..+.|++..++ .+|+.+-|.. .+|+
T Consensus 268 ds~~e~~~~HtEFv~g~Dws~~~~~------~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCGLDWSLFDPG------QVASTGWDELLYVWN 307 (311)
T ss_pred hhhhhhhhccceEEeccccccccCc------eeeecccccceeeec
Confidence 6677788889999999999887443 5788888887 8883
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6e-31 Score=207.78 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=228.3
Q ss_pred ccccccccccEEEEEEEEc-CCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 26 YLKSLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 26 ~~~~~~h~~~V~~v~~~~~-~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
.+..-+|+.+|-.++|+|- |+|-+|++++.|+.-.+-+=+++. +-.+.. |++.|++. ..+.+..
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg--hkgavw~~------------~l~~na~ 72 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG--HKGAVWSA------------TLNKNAT 72 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec--cCcceeee------------ecCchhh
Confidence 3456799999999999653 468889999999999888877776 444433 55555533 3333333
Q ss_pred eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
..++++ .+.+.++|+.-++ ..+..+ .|..-|.+++|+.|.++|++| .+.-+++||++..+...+ .
T Consensus 73 ~aasaa--adftakvw~a~tg---delhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-------E 138 (334)
T KOG0278|consen 73 RAASAA--ADFTAKVWDAVTG---DELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-------E 138 (334)
T ss_pred hhhhhc--ccchhhhhhhhhh---hhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------h
Confidence 222222 2557799998877 666666 799999999999999999999 999999999985444332 4
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
+.+|++.|..+.|.... +.|++++.|++||+||.+++... +.+.. +.+|+++.++++|++|
T Consensus 139 ~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRIL 199 (334)
T ss_pred hcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEE
Confidence 58999999999999887 88999999999999999998765 44444 5689999999999999
Q ss_pred EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644 263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 342 (421)
Q Consensus 263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 342 (421)
..+..+.|.+||..+ -.+++.++.+... .+.+.+|+...+++|++|+.++.||..++......
T Consensus 200 Tia~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred EEecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 888778999999986 6777777665543 68899999999999999999999999999555554
Q ss_pred EecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
..+|.++|-++.|+|+ +...++|+.||+ +||
T Consensus 263 nkgh~gpVhcVrFSPd-------GE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPD-------GELYASGSEDGTIRLW 294 (334)
T ss_pred ccCCCCceEEEEECCC-------CceeeccCCCceEEEE
Confidence 5999999999999999 448999999999 999
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=207.52 Aligned_cols=242 Identities=18% Similarity=0.189 Sum_probs=196.7
Q ss_pred eeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644 129 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 207 (421)
Q Consensus 129 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 207 (421)
++..+ .+|++.|+.+.|+|+|.+||+| .|..|.+|++....+-+. .+.+|.++|..+.|.+|+ +.|++++
T Consensus 39 p~m~l-~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~-------~lkgHsgAVM~l~~~~d~-s~i~S~g 109 (338)
T KOG0265|consen 39 PIMLL-PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW-------VLKGHSGAVMELHGMRDG-SHILSCG 109 (338)
T ss_pred hhhhc-CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee-------eeccccceeEeeeeccCC-CEEEEec
Confidence 33444 8999999999999999999999 999999999872323222 447999999999999999 9999999
Q ss_pred cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-EecC-CeEEEEECCCCCcceeEE
Q 014644 208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-~~i~i~d~~~~~~~~~~~ 285 (421)
.|.+|+.||+++++.. +.+.. |..-++.+.-+.-|..++ ++++ +++++||+++ ...++++
T Consensus 110 tDk~v~~wD~~tG~~~----rk~k~-------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~ 171 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRI----RKHKG-------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTF 171 (338)
T ss_pred CCceEEEEecccceee----ehhcc-------------ccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcc
Confidence 9999999999998765 44444 477888888555565554 6676 9999999996 7777777
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
...... +++.|..++..+.+|+-|+.|++||++.. ....++.||.++|..+..++.
T Consensus 172 ~~kyql----------------tAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~------- 227 (338)
T KOG0265|consen 172 ENKYQL----------------TAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRY------- 227 (338)
T ss_pred ccceeE----------------EEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccC-------
Confidence 544432 79999999999999999999999999876 778999999999999999988
Q ss_pred cceeeeecccCc-ccCCC-----CCc-ccc----ccccccCeEEEEEccCCCeEEEecCC-ceEEEeC
Q 014644 366 LSNLTRGLYRQA-HENSS-----SGH-HEL----SYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA 421 (421)
Q Consensus 366 ~~~l~~g~~d~~-~iw~~-----~~~-~~~----~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~~ 421 (421)
+.++.+-+.|.. ++|+. .+. +.. ...++.....++|+|+++.+.+|+.| .+|+|++
T Consensus 228 gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 228 GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 448999999999 99932 222 222 22445667789999999999999955 5999985
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.9e-30 Score=214.38 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=219.7
Q ss_pred eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce
Q 014644 93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 171 (421)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~ 171 (421)
+--+.++++++++++++. +.+..+|.+......+..+++ .+|..+|..+.||||.++|+++ .|..+.+||+. .+.
T Consensus 227 VWfl~FS~nGkyLAsaSk--D~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd 302 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASK--DSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGD 302 (519)
T ss_pred EEEEEEcCCCeeEeeccC--CceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCC-cch
Confidence 445667788999999887 456677877766556778888 8999999999999999999998 88889999999 555
Q ss_pred eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 251 (421)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 251 (421)
+..... .++...+.+++|.||| ..+++|+.|+++..||+..... ..|++ .. ...|.
T Consensus 303 ~~~~y~------~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~g-vr-----------~~~v~ 358 (519)
T KOG0293|consen 303 LRHLYP------SGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEG-VR-----------DPKVH 358 (519)
T ss_pred hhhhcc------cCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hcccc-cc-----------cceeE
Confidence 554431 3356889999999999 9999999999999999986531 34444 10 24689
Q ss_pred EEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644 252 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 330 (421)
Q Consensus 252 ~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i 330 (421)
++++++||+++++. .+..|++|+..+ .........+.. + ++++.|.|++++++.-.+..|++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~-i---------------ts~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP-I---------------TSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc-e---------------eEEEEcCCCcEEEEEcccCeeEE
Confidence 99999999998865 559999999875 444433433332 2 79999999999999999999999
Q ss_pred EecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-
Q 014644 331 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN- 406 (421)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~- 406 (421)
||++.. .....+.||+..-..+.-+.. |. +..++++|+.|++ +|| ..+.++..+.||...|++++|+|..+
T Consensus 422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFg--g~--~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 422 WDLEEN-KLVRKYFGHKQGHFIIRSCFG--GG--NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred eecchh-hHHHHhhcccccceEEEeccC--CC--CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 999954 677888898876555544433 11 1358999999999 999 66788889999999999999999875
Q ss_pred eEEEecC-CceEEEe
Q 014644 407 LIACANG-NSLFFHY 420 (421)
Q Consensus 407 ~la~~~~-~~~~i~~ 420 (421)
++|+|++ +.|+||.
T Consensus 497 m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 497 MFASASDDGTIRIWG 511 (519)
T ss_pred HhhccCCCCeEEEec
Confidence 5888885 5599995
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=196.89 Aligned_cols=244 Identities=15% Similarity=0.170 Sum_probs=194.4
Q ss_pred eeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCc--eeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644 128 RCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 203 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 203 (421)
..++.+ ++|.+++..++|+|. |..||++ .|+.|++|+..... .+..++ -.+|+..|++++|+|.| ++|
T Consensus 5 ~~~~~~-~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl------d~~hkrsVRsvAwsp~g-~~L 76 (312)
T KOG0645|consen 5 ILEQKL-SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL------DDGHKRSVRSVAWSPHG-RYL 76 (312)
T ss_pred eeEEee-cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec------cccchheeeeeeecCCC-cEE
Confidence 344556 899999999999998 8899999 99999999998311 233332 26899999999999999 999
Q ss_pred EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC--Cc
Q 014644 204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD--ST 280 (421)
Q Consensus 204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~--~~ 280 (421)
+++|.|.++.||.-..+.. +....+ .+|...|.+++|+++|.+||+++. ..|-||..... -+
T Consensus 77 a~aSFD~t~~Iw~k~~~ef--ecv~~l-------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEF--ECVATL-------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred EEeeccceEEEeecCCCce--eEEeee-------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 9999999999997665432 112333 456999999999999999999976 99999998732 34
Q ss_pred ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC--CceeEEecCCCCccceeeecC
Q 014644 281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 358 (421)
+...++.|.+-+ -.+.|+|...+|+++|+|++|++|+-..+. ...+++.+|...|.+++|.+.
T Consensus 142 c~aVL~~HtqDV---------------K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 142 CIAVLQEHTQDV---------------KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred EEeeeccccccc---------------cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC
Confidence 566778888754 789999999999999999999999877322 458899999999999999988
Q ss_pred CcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 359 PRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 359 ~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+..|+++++|+. +||..- -.....|+..+..++|. .-.||+++ ++.|++|.
T Consensus 207 -------G~rl~s~sdD~tv~Iw~~~--~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 207 -------GSRLVSCSDDGTVSIWRLY--TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred -------CceEEEecCCcceEeeeec--cCcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 348999999999 999321 11223467889999999 44667666 77798885
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-29 Score=200.01 Aligned_cols=259 Identities=15% Similarity=0.172 Sum_probs=201.2
Q ss_pred cceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
+.+.|.+.......+..+.+ .-.+.+..++|++. ...++++ .||+++|||......++.. +++|...|.
T Consensus 38 G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~-------~kEH~~EV~ 108 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSY--DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHK-------FKEHKREVY 108 (311)
T ss_pred ceEEEEecCCCCCeEEEEee--ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhH-------HHhhhhheE
Confidence 34555555433222333333 34678999999985 4455566 9999999997755555543 488999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-Ce
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MN 269 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~ 269 (421)
++.|++.....++++|.|++|++|+...+... .++.+ |...|...+|+|. +.++++++. +.
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv----~Tf~g-------------h~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV----QTFNG-------------HNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcce----EeecC-------------CccEEEEEecCCCCCCeEEEccCCce
Confidence 99999987678888999999999998765433 44444 5899999999995 667777754 99
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
+++||++..++.+. +..|...+ .++.|+. +...|+||+.|+.|++||++.-...+..+.+|.-
T Consensus 172 l~lwdvr~~gk~~~-i~ah~~Ei---------------l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~ 235 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMS-IEAHNSEI---------------LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL 235 (311)
T ss_pred EEEEEecCCCceeE-EEecccee---------------EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce
Confidence 99999998777665 77887543 7999998 6778999999999999999998888999999999
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccCCCC---CccccccccccCeEEEEEccC-CCeEEEec-CCceEEEe
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPT-TNLIACAN-GNSLFFHY 420 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~---~~~~~~~~~~~~v~~~~~spd-~~~la~~~-~~~~~i~~ 420 (421)
.|+.+.|+|.+ -..|++++.|-+ +||+.. ..+....-|+.-|..+.||+- ..++|+.+ +..++||+
T Consensus 236 AVRkvk~Sph~------~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 236 AVRKVKFSPHH------ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EEEEEecCcch------hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999999984 247999999999 999433 334444567888999999987 45677766 77899998
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=219.68 Aligned_cols=296 Identities=17% Similarity=0.255 Sum_probs=211.8
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecC--CCCCcccccccccccceeeccCCCCceee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMD--HFPFVSSENTLLAEKNFMNEHNPPSFAHG 105 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (421)
.+|+..|.++++ .|.|..|++||.|-+|++||+.... ++.+.... ...++.++.|+.....++++..+.
T Consensus 164 ~hgtk~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a----- 236 (641)
T KOG0772|consen 164 KHGTKIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA----- 236 (641)
T ss_pred cCCceEEEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-----
Confidence 467889999999 8999999999999999999987644 22221111 122344555555444444444322
Q ss_pred eecccccccceeEEeecccceeeeee---------eecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeee
Q 014644 106 YHLEWTENMATKIANVGNSVHARCQK---------VYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN 174 (421)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~ 174 (421)
.+++.|-+.....++.+ .. +||...++|.+|+|+. ..++++ .||++++||++......+
T Consensus 237 ---------qakl~DRdG~~~~e~~KGDQYI~Dm~nT-KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 237 ---------QAKLLDRDGFEIVEFSKGDQYIRDMYNT-KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ---------ceeEEccCCceeeeeeccchhhhhhhcc-CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 23333332221112221 22 7999999999999964 355566 999999999986666666
Q ss_pred eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc--ceeE
Q 014644 175 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISD 252 (421)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~ 252 (421)
++..+ ...+..-++++++|+|++ +.||+|..||.|.+|+.+..... ....+-.. |.. .|++
T Consensus 307 Vik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~A-------------H~~g~~Its 369 (641)
T KOG0772|consen 307 VIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDA-------------HLPGQDITS 369 (641)
T ss_pred EEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc-cceEeeec-------------cCCCCceeE
Confidence 65333 334556788999999999 89999999999999998654321 11122222 344 8999
Q ss_pred EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------C
Q 014644 253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------S 325 (421)
Q Consensus 253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------d 325 (421)
|.||+||++|++.+. +++++||++...+++....+-... |.-+.++|||+.++|++|+. .
T Consensus 370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~ 436 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTA 436 (641)
T ss_pred EEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCC
Confidence 999999999999765 999999999877777665543221 12268999999999999864 5
Q ss_pred CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 326 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 326 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
|.+.+||..+. ..+..+......|-.+.|+|. ++.+..|+.||. +++
T Consensus 437 g~L~f~d~~t~-d~v~ki~i~~aSvv~~~Whpk-------LNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 437 GTLFFFDRMTL-DTVYKIDISTASVVRCLWHPK-------LNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEEeccce-eeEEEecCCCceEEEEeecch-------hhheeeecCCCceEEE
Confidence 78999998876 667777777888999999998 678899999999 766
No 57
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.4e-29 Score=233.87 Aligned_cols=305 Identities=15% Similarity=0.171 Sum_probs=224.0
Q ss_pred cc-cccEEEEEEEEcCCCCeEEEEe--CCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 31 EI-EEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 31 ~h-~~~V~~v~~~~~~~~~~l~t~s--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
+| +..|.+|.. +|++..++||+ .|+.++||+.+.-- .....
T Consensus 10 ~H~~~~IfSIdv--~pdg~~~aTgGq~~d~~~~iW~~~~vl-~~~~~--------------------------------- 53 (942)
T KOG0973|consen 10 NHNEKSIFSIDV--HPDGVKFATGGQVLDGGIVIWSQDPVL-DEKEE--------------------------------- 53 (942)
T ss_pred ccCCeeEEEEEe--cCCceeEecCCccccccceeecccccc-chhhh---------------------------------
Confidence 44 446889999 89999999999 99999999965421 00000
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC--c------------ee
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--D------------QC 172 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~--~------------~~ 172 (421)
++... .+.+-.. ..|.+.|+|+.|+|||++||+| +|+.|.+|..... + +.
T Consensus 54 -----------~~~~l---~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~ 118 (942)
T KOG0973|consen 54 -----------KNENL---PKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVES 118 (942)
T ss_pred -----------hhccc---chhheee-ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccce
Confidence 00000 0233333 7899999999999999999999 9999999998720 0 01
Q ss_pred eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644 173 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 252 (421)
Q Consensus 173 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~ 252 (421)
++.+ ..+.+|...|..++|+|++ .+|++++.|++|.+||.++.... +.+.+| .+.|-.
T Consensus 119 wk~~----~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~----~vl~~H-------------~s~VKG 176 (942)
T KOG0973|consen 119 WKVV----SILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELL----KVLRGH-------------QSLVKG 176 (942)
T ss_pred eeEE----EEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceee----eeeecc-------------cccccc
Confidence 1111 2357899999999999999 99999999999999999986433 565554 899999
Q ss_pred EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC----CCe
Q 014644 253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNL 327 (421)
Q Consensus 253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~----dg~ 327 (421)
+.|.|-|+|||+-++ ++|++|++.. -...+.+..+-...+.. .. ++.+.|||||++|++... -..
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~-------T~--f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLT-------TF--FLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCc-------ce--eeecccCCCcCeecchhhccCCcce
Confidence 999999999999876 9999999764 55555555543321100 11 178999999999997643 346
Q ss_pred EEEEecCCCCCceeEEecCCCCccceeeecCCc------cccc----ccceeeeecccCc-ccCCC--CCcccccc-ccc
Q 014644 328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPR------ARRS----SLSNLTRGLYRQA-HENSS--SGHHELSY-NLS 393 (421)
Q Consensus 328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~l~~g~~d~~-~iw~~--~~~~~~~~-~~~ 393 (421)
+.|.+-.+. .....+-||..++..+.|.|.-- |... .+..+|+|+.|+. .+|.. ..++.... -+.
T Consensus 247 ~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 247 IAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred eEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 888887665 56788999999999999998611 1110 1136899999999 99943 23333333 457
Q ss_pred cCeEEEEEccCCCeEEEec-CCceEEE
Q 014644 394 SKLLHLAWHPTTNLIACAN-GNSLFFH 419 (421)
Q Consensus 394 ~~v~~~~~spd~~~la~~~-~~~~~i~ 419 (421)
.+|.+++|+|||-.|.+++ ++.+.++
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 8899999999998887777 6777765
No 58
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.6e-28 Score=224.23 Aligned_cols=232 Identities=17% Similarity=0.243 Sum_probs=173.9
Q ss_pred ccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+|.+.|++++| +| ++++|++|+.|++|++||+.++......
T Consensus 72 ~GH~~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~----------------------------------- 114 (493)
T PTZ00421 72 LGQEGPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNI----------------------------------- 114 (493)
T ss_pred eCCCCCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCcccccc-----------------------------------
Confidence 589999999999 56 7889999999999999999764311000
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
..++..+ .+|...|.+++|+|++ .+|+++ .|++|+|||++ .++....+ .+|
T Consensus 115 ------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~l-------~~h 167 (493)
T PTZ00421 115 ------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVI-------KCH 167 (493)
T ss_pred ------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEEE-------cCC
Confidence 0344556 7999999999999985 688998 99999999998 45555443 679
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc-ceeEEEEcCCCCEEEEe
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR 265 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~ 265 (421)
...|.+++|+|++ .+|++++.|++|++||+++++.. ..+..| .+ ....+.|.+++..++++
T Consensus 168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H-------------~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEAH-------------ASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEecC-------------CCCcceEEEEcCCCCeEEEE
Confidence 9999999999999 99999999999999999987643 333332 33 34567889988777753
Q ss_pred c-----CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCc
Q 014644 266 D-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG 339 (421)
Q Consensus 266 ~-----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~ 339 (421)
+ ++.|++||+++...++.....+.... +....|++++++|++++ .|+.|++||+.++. .
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~ 294 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-L 294 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-e
Confidence 2 38999999986455555444333221 13567899999998887 59999999999873 3
Q ss_pred eeEEe-cCCCCccceeeecC
Q 014644 340 GITVE-AGKNENRKPILQAA 358 (421)
Q Consensus 340 ~~~~~-~~~~~~~~~~~~~~ 358 (421)
...+. .+..+.+.+++.|.
T Consensus 295 ~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 295 TFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeccCCCCCcceEeccc
Confidence 33333 34556777777776
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=200.86 Aligned_cols=307 Identities=13% Similarity=0.180 Sum_probs=218.5
Q ss_pred CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644 23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 102 (421)
Q Consensus 23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 102 (421)
+++-.--..|+.++.+.+| ++||.++|||+.|-.|+|.|++..-.+. .+.+
T Consensus 102 ~yEt~ylt~HK~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks----~~~e----------------------- 152 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKS----KPKE----------------------- 152 (430)
T ss_pred ccceEEEeecccceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhc----chhh-----------------------
Confidence 4444444579999999999 8999999999999999999987421000 0000
Q ss_pred eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc--eeeeeeecC
Q 014644 103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMK 179 (421)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~ 179 (421)
+..-++...-..++++ -.|.++|+++.|+|....|++| .|++|+++|..... +..++
T Consensus 153 ---------------m~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~---- 212 (430)
T KOG0640|consen 153 ---------------MISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV---- 212 (430)
T ss_pred ---------------hccCCcccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH----
Confidence 0000001111456777 8999999999999999999999 99999999997432 12222
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
-....+|.++.|+|.| .+|+.|..-.++++||+.+-+..... . .-..|.+.|+++.+++.|
T Consensus 213 ----~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvsa---------n-----Pd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 213 ----FQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSA---------N-----PDDQHTGAITQVRYSSTG 273 (430)
T ss_pred ----hhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeec---------C-----cccccccceeEEEecCCc
Confidence 2345789999999999 99999999999999999986543110 0 124568899999999999
Q ss_pred CEEEEecC-CeEEEEECCCCCcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644 260 QHLLSRDY-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 337 (421)
Q Consensus 260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~ 337 (421)
++.++++. |.|+|||--+ ++++.++.. |.+. .|.+..|+.+|+||++.+.|..+++|.+.++
T Consensus 274 ~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~- 337 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG- 337 (430)
T ss_pred cEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeecCC-
Confidence 99999986 9999999875 778777653 4432 2368899999999999999999999999998
Q ss_pred CceeEEecCCC-----CccceeeecCCcccccccceeeeecccCc--ccC---CCCCccccccccccCeEEEEEccCCCe
Q 014644 338 AGGITVEAGKN-----ENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN---SSSGHHELSYNLSSKLLHLAWHPTTNL 407 (421)
Q Consensus 338 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw---~~~~~~~~~~~~~~~v~~~~~spd~~~ 407 (421)
+.+..+.|-.. .-....|... ..++..-..... --| +.........+|.+.++.+.-||.++.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNht-------EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHT-------EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCc-------cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 44444443211 0111122221 123333222222 445 122333456789999999999999999
Q ss_pred EEEecCC-ceEEEe
Q 014644 408 IACANGN-SLFFHY 420 (421)
Q Consensus 408 la~~~~~-~~~i~~ 420 (421)
++++++| +.++|+
T Consensus 411 FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 411 FMTCSDDFRARFWY 424 (430)
T ss_pred eeeecccceeeeee
Confidence 9999965 599996
No 60
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7e-28 Score=200.31 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=222.9
Q ss_pred ccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644 88 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 166 (421)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~ 166 (421)
.....+++++.+|+.++.++|+- +....+|+..++ .....+ .+|...|+++.|+.+|.+||+| .+|.|+||..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGg--DD~AflW~~~~g---e~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGG--DDLAFLWDISTG---EFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCC--CceEEEEEccCC---cceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 33457888888888888888876 457789999988 566666 8999999999999999999999 9999999999
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 246 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 246 (421)
.++.....+ ....+.+.-+.|+|.+ ..|++|+.||.+.+|.+.++..+ +++.+|
T Consensus 136 stg~~~~~~--------~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~----kv~~Gh------------- 189 (399)
T KOG0296|consen 136 STGGEQWKL--------DQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALC----KVMSGH------------- 189 (399)
T ss_pred ccCceEEEe--------ecccCceEEEEecccc-cEEEeecCCCcEEEEECCCccee----eEecCC-------------
Confidence 955544433 2344668889999998 99999999999999999986544 666664
Q ss_pred ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644 247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 325 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d 325 (421)
..++++=.|.|+|+.++++.+ |+|++|++.+ ++++..+....+.. ..++.++..+..++.|+.+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~--------------~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLE--------------LPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCc--------------CCccccccccceeEeccCC
Confidence 889999999999999999976 9999999997 88888887544321 1467888889999999999
Q ss_pred CeEEEEecCCCCCceeEEe--------cCCCCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccC
Q 014644 326 NLLRIFSHGVGSAGGITVE--------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSK 395 (421)
Q Consensus 326 g~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~ 395 (421)
+.+++-+..++ +.+.... .+...+.++.+.|. . ...++.|+|+-||. .||+ ....+.....|...
T Consensus 255 ~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~~~~--s--s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 255 GVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVESIPS--S--SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred ccEEEEccccc-eEEEecCCCCccccccchhhhhhhhhccc--c--cccchhhcccccceEEEEecccchhheeccCCCc
Confidence 99988887776 3333333 45555666666554 1 11568899999999 9994 44566777889999
Q ss_pred eEEEEEccCCCeEEEecCCceEEEeC
Q 014644 396 LLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 396 v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
|+.+.|-++..+++++.++.++.|++
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeec
Confidence 99999999554555555888999986
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=225.62 Aligned_cols=238 Identities=11% Similarity=0.173 Sum_probs=206.4
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
...+.+|..++|+|...+++++ ..|.|++||.+ .+.++. .+.+|.++|+.++|+|++ .++++|+.|..|+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~-------rFdeHdGpVRgv~FH~~q-plFVSGGDDykIk 76 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLID-------RFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIK 76 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHh-------hhhccCCccceeeecCCC-CeEEecCCccEEE
Confidence 4567789999999999999999 99999999999 455554 348899999999999999 8999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
+|+..+.++. ..+- +|-..|..+.|++.-.+|++++| .+|+||++.+ .+++..+.+|.+-+
T Consensus 77 VWnYk~rrcl----ftL~-------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~iavltGHnHYV 138 (1202)
T KOG0292|consen 77 VWNYKTRRCL----FTLL-------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIAVLTGHNHYV 138 (1202)
T ss_pred EEecccceeh----hhhc-------------cccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceEEEEecCceEE
Confidence 9999987654 3333 45889999999999999999988 9999999997 99999999999876
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC----------------------------CCceeEEe
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----------------------------SAGGITVE 344 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~----------------------------~~~~~~~~ 344 (421)
.+..|+|....++++|-|.+||+||+..- .....++.
T Consensus 139 ---------------McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 139 ---------------MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred ---------------EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 78999999999999999999999997631 01245788
Q ss_pred cCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC----ccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644 345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 418 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~----~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i 418 (421)
||.-.|+-.+|.|. .+++++|++|+. ++|...+ ......+|...|.++-|||..+++.+.+ +..|++
T Consensus 204 GHDRGVNwaAfhpT-------lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPT-------LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred ccccccceEEecCC-------cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 99999999999998 569999999999 9995444 3456779999999999999999999999 566999
Q ss_pred EeC
Q 014644 419 HYA 421 (421)
Q Consensus 419 ~~~ 421 (421)
|+.
T Consensus 277 wDm 279 (1202)
T KOG0292|consen 277 WDM 279 (1202)
T ss_pred Eec
Confidence 974
No 62
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.8e-28 Score=207.57 Aligned_cols=286 Identities=17% Similarity=0.250 Sum_probs=207.6
Q ss_pred ccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccC
Q 014644 19 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 98 (421)
Q Consensus 19 ~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 98 (421)
.+...++....+.|.+.|+.+++.| .+...+|+.+..+.|.|||..+..-.......+
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~--------------------- 167 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC--------------------- 167 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccC---------------------
Confidence 4555677777889999999999974 457888999999999999987644111100000
Q ss_pred CCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeee
Q 014644 99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIV 176 (421)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~ 176 (421)
.+-..+ .+|...-++|+|++.. -.|+++ .|++|.+||+......-+++
T Consensus 168 -----------------------------~Pdl~L-~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~ 217 (422)
T KOG0264|consen 168 -----------------------------RPDLRL-KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV 217 (422)
T ss_pred -----------------------------CCceEE-EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence 222234 6888888899999853 356666 99999999998443321111
Q ss_pred ecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644 177 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 256 (421)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 256 (421)
. ....+.+|...|..++|+|....++++++.|+.+.|||+|++ ..+..+.. .+|...+++++|+
T Consensus 218 ~-p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~-------------~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 218 D-PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSV-------------KAHSAEVNCVAFN 281 (422)
T ss_pred c-ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccc-------------cccCCceeEEEeC
Confidence 0 112358899999999999987689999999999999999973 22222333 3458999999999
Q ss_pred CCCC-EEEEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEec
Q 014644 257 NDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 257 ~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~ 333 (421)
|-+. .||+|+ |++|.+||+|+-.+++..+.+|...+ +.+.|+|. ...||+++.|+.+.+||+
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEec
Confidence 9655 556776 49999999998788999999999865 89999996 567889999999999999
Q ss_pred CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEe-c
Q 014644 334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA-N 412 (421)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~-~ 412 (421)
..-+.....-.+..++ .|++....||...|.+++|+|..+++++. +
T Consensus 347 s~ig~eq~~eda~dgp---------------------------------pEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGP---------------------------------PELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred cccccccChhhhccCC---------------------------------cceeEEecCcccccccccCCCCCCeEEEEec
Confidence 8653322111111110 13445555889999999999999886544 4
Q ss_pred -CCceEEEe
Q 014644 413 -GNSLFFHY 420 (421)
Q Consensus 413 -~~~~~i~~ 420 (421)
++.+.||+
T Consensus 394 eDN~LqIW~ 402 (422)
T KOG0264|consen 394 EDNILQIWQ 402 (422)
T ss_pred CCceEEEee
Confidence 55688986
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=180.84 Aligned_cols=315 Identities=15% Similarity=0.114 Sum_probs=228.5
Q ss_pred cCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEee-ecCCCCCcccccccccccceeecc
Q 014644 20 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIK-EMDHFPFVSSENTLLAEKNFMNEH 97 (421)
Q Consensus 20 ~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 97 (421)
-++.|+.+..++-+..|.+++| +|.|.+.++|+..++.||.....-. ++.-. ....+..|.+-.---..+.|+|.+
T Consensus 19 ~k~~f~~i~~l~dsqairav~f--hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAF--HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred cccceEEEEEecchhheeeEEe--cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 3567999999999999999999 8999999999999999998643211 00000 000111122222222245788999
Q ss_pred CCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC----CCCEEEEE--cCCcEEEEeCCCCce
Q 014644 98 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQ 171 (421)
Q Consensus 98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~--~d~~i~lwd~~~~~~ 171 (421)
+++++..+++|+.+..-.+.-++.++....-.-..+ .-|.+.|+.++|.. .+.+|+++ .|..|++-|.. .++
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~ 174 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQ 174 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCC
Confidence 999999999999844332222344433222233345 67999999999954 36677775 78888888987 555
Q ss_pred eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 251 (421)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~ 251 (421)
.+..+ .+|++.|.++ ++-++ ..+++|+.|.+|++||++-.......-..+.. . .-..+.|.
T Consensus 175 ~~~a~-------sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~----~------glessava 235 (350)
T KOG0641|consen 175 GFHAL-------SGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD----G------GLESSAVA 235 (350)
T ss_pred cceee-------cCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccceeeeccCcccC----C------CcccceeE
Confidence 55543 8899999987 45556 89999999999999999986544221111111 0 00136799
Q ss_pred EEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644 252 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 330 (421)
Q Consensus 252 ~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i 330 (421)
+++..|.|++|++|.. ....+||++- +..++.+..|...+ .++.|+|...|+++++.|..|++
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEE
Confidence 9999999999999965 8899999995 99999999888754 89999999999999999999999
Q ss_pred EecCCC---CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 331 FSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 331 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
-|++.. +....+...|.+.+-...|.|. ...+++.+.|.+ .+|
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~-------d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-------DFSFISSSADKTATLW 346 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCc-------cceeeeccCcceEEEe
Confidence 998853 2235566788888888889887 336677788887 888
No 64
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=215.76 Aligned_cols=254 Identities=15% Similarity=0.187 Sum_probs=174.2
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 192 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (421)
.+++|+.... .++..+ .+|.+.|.+++|+|+ +.+|++| .|++|+|||+...+.....+......+.+|...|.+
T Consensus 55 vI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 55 AIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred EEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 3566665544 556667 899999999999996 7899998 999999999974332111100000134789999999
Q ss_pred EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644 193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 271 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~ 271 (421)
++|+|++..+|++++.|++|++||+++++.. ..+.. ...|.+++|+|+|.+|++++. +.|+
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~~--------------~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEec--------------CCcEEEEEECCCCCEEEEEecCCEEE
Confidence 9999998445689999999999999987532 11221 457999999999999998864 9999
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC----eEEEEecCCCCCceeEEecCC
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg----~i~iwd~~~~~~~~~~~~~~~ 347 (421)
|||+++ ++.+..+.+|...+... .+....|++++.+|++++.|+ .|+|||++.....+..+..+.
T Consensus 193 IwD~Rs-g~~i~tl~gH~g~~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 193 IIDPRK-QEIASSFHIHDGGKNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred EEECCC-CcEEEEEecccCCceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 999997 88888888887643110 012335678999999887764 799999996544444443332
Q ss_pred CCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccc--cccccCeEEEEEccCCC
Q 014644 348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELS--YNLSSKLLHLAWHPTTN 406 (421)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~--~~~~~~v~~~~~spd~~ 406 (421)
....+....+.+. +.++++|..|+. ++|.. .+.+..+ ..+..++..++|.|+..
T Consensus 262 -~~~~L~p~~D~~t----g~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 262 -ASAPLIPHYDEST----GLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred -CccceEEeeeCCC----CCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 2222221111110 237889999999 99932 2222211 23456788899999853
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.7e-29 Score=207.49 Aligned_cols=230 Identities=11% Similarity=0.198 Sum_probs=189.2
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||++.|.|+.|+ .+.+++||+|.+|++||+++++
T Consensus 234 ~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge----------------------------------------- 268 (499)
T KOG0281|consen 234 TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGE----------------------------------------- 268 (499)
T ss_pred hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCc-----------------------------------------
Confidence 4899999999994 4599999999999999999864
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+++++ -+|.+.|..+.|+ ..+++++ .|.++.+||+..... ...- ..+.+|.+
T Consensus 269 -------------------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~-it~r----rVLvGHrA 321 (499)
T KOG0281|consen 269 -------------------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD-ITLR----RVLVGHRA 321 (499)
T ss_pred -------------------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH-HHHH----HHHhhhhh
Confidence 44555 7899999999997 4588888 999999999984432 1110 23489999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.|..+.|+. +++++++.|.+|++|++.+.... +++.+| ...|.++.+. |+++++|+.
T Consensus 322 aVNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl~gH-------------kRGIAClQYr--~rlvVSGSSD 379 (499)
T KOG0281|consen 322 AVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNGH-------------KRGIACLQYR--DRLVVSGSSD 379 (499)
T ss_pred heeeecccc---ceEEEecCCceEEEEeccceeee----hhhhcc-------------cccceehhcc--CeEEEecCCC
Confidence 999999984 79999999999999999997765 777765 7788888775 899999965
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC--------c
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------G 339 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~--------~ 339 (421)
.+|++||+.. |.++..+++|+..+ .++.| |.+.|++|.+||+|++||+..+.. .
T Consensus 380 ntIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 380 NTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred ceEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccccCCcccccchH
Confidence 9999999996 99999999999987 78888 678899999999999999987632 2
Q ss_pred eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
...+..|.+.|..+.|..- .+++.+.|.. -+|
T Consensus 442 l~~lv~hsgRVFrLQFD~f---------qIvsssHddtILiW 474 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFDEF---------QIISSSHDDTILIW 474 (499)
T ss_pred HHhhhhccceeEEEeecce---------EEEeccCCCeEEEE
Confidence 4456678888888877654 6777777777 899
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=205.67 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=207.5
Q ss_pred cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.+.|.+++|+ |... -+|+++ .-.+.||+..+.. .+.+.. +. ..+.+.++-.+++.++.|..
T Consensus 26 ~~~vssl~fs--p~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr--Fk------------~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 26 HNSVSSLCFS--PKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR--FK------------DVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred cCcceeEecC--CCCCCceEEec-ccEEEEEecchhhhhhhHHh--hc------------cceeEEEeecCCeEEEccCC
Confidence 4689999995 4422 344433 3479999977755 222322 22 24556667778888888765
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.+.++++|+.+. ..++.+ .+|+.+|....|+|++. .+++| +|+.+++||+.+.. + .+ .+.+|++
T Consensus 89 --sG~V~vfD~k~r---~iLR~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v-~~-----~l~~htD 154 (487)
T KOG0310|consen 89 --SGHVKVFDMKSR---VILRQL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--V-QA-----ELSGHTD 154 (487)
T ss_pred --cCcEEEeccccH---HHHHHH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--E-EE-----EecCCcc
Confidence 678999996554 567777 89999999999999655 55557 89999999998333 3 22 3589999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 268 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 268 (421)
.|+|.+|+|..+.++++|+.||.|++||++..... ...+ .|..+|..+.+-|.|..|++++..
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~el--------------nhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVEL--------------NHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEe--------------cCCCceeeEEEcCCCCEEEEcCCC
Confidence 99999999987689999999999999999985311 1222 237899999999999999999888
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
.+++||+-+.++.+..+..|...+ +|+++..++..|++|+-|+.+++||+.+.
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~------------ 270 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNY------------ 270 (487)
T ss_pred eEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccce------------
Confidence 999999987566666666577755 89999999999999999999999996654
Q ss_pred CccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i 418 (421)
.+.++- .+.++|.+++.+||++.+++|-.|++..
T Consensus 271 ---Kvv~s~---------------------------------~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 271 ---KVVHSW---------------------------------KYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ---EEEEee---------------------------------ecccceeeEEecCCCceEEEecccceee
Confidence 122211 2357788899999988888888776543
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=213.47 Aligned_cols=287 Identities=13% Similarity=0.142 Sum_probs=229.2
Q ss_pred cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644 27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 105 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (421)
+.-.||...|.++++ +.+...++ ++..+.+++|+..+.+ ++++.. ..+++..+-|...++
T Consensus 367 i~~~GHR~dVRsl~v--S~d~~~~~-Sga~~SikiWn~~t~kciRTi~~----------------~y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCV--SSDSILLA-SGAGESIKIWNRDTLKCIRTITC----------------GYILASKFVPGDRYI 427 (888)
T ss_pred eeeccchhheeEEEe--ecCceeee-ecCCCcEEEEEccCcceeEEecc----------------ccEEEEEecCCCceE
Confidence 334689999999999 34444444 4456799999999876 344322 356666777777777
Q ss_pred eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC----CceeeeeeecCC
Q 014644 106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI----SDQCFNIVDMKP 180 (421)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~----~~~~~~~~~~~~ 180 (421)
..|.. .+.+.++++... ..+.+. ++|.+.|.+++.+||++.+++| .|.+|++||..- ++...+.+.++.
T Consensus 428 v~G~k--~Gel~vfdlaS~---~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 428 VLGTK--NGELQVFDLASA---SLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred EEecc--CCceEEEEeehh---hhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 77765 456677777766 666666 7999999999999999999999 999999999641 111222222222
Q ss_pred CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
.+.-.-.+.|.|+++|||+ ++|+.+-.|.+|++|-+.+-+.. -. +.+|.-+|.++.++||++
T Consensus 502 ~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFf----ls-------------LYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFF----LS-------------LYGHKLPVLSMDISPDSK 563 (888)
T ss_pred ceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeee----ee-------------ecccccceeEEeccCCcC
Confidence 2222345789999999999 99999999999999999885432 12 345689999999999999
Q ss_pred EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
++++|+. .+|++|-++- |.+.+.+-+|+..+ .++.|-|....+.+++.|+.|+-||-..- ..
T Consensus 564 livTgSADKnVKiWGLdF-GDCHKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~ 626 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EE 626 (888)
T ss_pred eEEeccCCCceEEecccc-chhhhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhh-hh
Confidence 9999976 9999999985 99999999999865 79999999999999999999999998876 77
Q ss_pred eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.+.+.+|...+++++..|+ +.++++++.|.. ++|
T Consensus 627 iq~L~~H~~ev~cLav~~~-------G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPN-------GSFVVSSSHDKSIRLW 661 (888)
T ss_pred heeeccchheeeeeEEcCC-------CCeEEeccCCceeEee
Confidence 8999999999999999999 449999999999 999
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=207.83 Aligned_cols=280 Identities=20% Similarity=0.206 Sum_probs=210.4
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecC-CCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.|..+|+.+.| -++...|++|+.|..|++|++..++........ ..+.+..+.+..++..+++...
T Consensus 173 ~h~gev~~v~~--l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~----------- 239 (459)
T KOG0288|consen 173 AHEGEVHDVEF--LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN----------- 239 (459)
T ss_pred ccccccceeEE--ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC-----------
Confidence 58899999999 477789999999999999998876632222211 2233444444444444333332
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+...++|+++.. +...++ .+|++.|+++.|......+++| .|.+|++||+. ...+.+.+ + ...
T Consensus 240 ---d~~~r~Wnvd~~---r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l--~~S 303 (459)
T KOG0288|consen 240 ---DKNLRLWNVDSL---RLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------L--PGS 303 (459)
T ss_pred ---CCceeeeeccch---hhhhhh-cccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------c--ccc
Confidence 557899999987 788888 8999999999998877678898 99999999998 45555442 1 224
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.+..++.+ . ..++++-.|+.|++||.+..... ..... .+.|+++..+++|..+++++-
T Consensus 304 ~cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 304 QCNDIVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred cccceEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCC
Confidence 45556655 3 67889999999999999987654 44444 468999999999999988764
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
.++.+.|+++ .+....+....... --+.+.+.|||++.|+++||.||.|+||++.++ ++...+....
T Consensus 363 dtl~viDlRt-~eI~~~~sA~g~k~-----------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~ 429 (459)
T KOG0288|consen 363 DTLKVIDLRT-KEIRQTFSAEGFKC-----------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLST 429 (459)
T ss_pred Cceeeeeccc-ccEEEEeecccccc-----------ccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCC
Confidence 9999999997 66666665543221 012378999999999999999999999999998 6666666555
Q ss_pred CC--ccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 348 NE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 348 ~~--~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.+ +.++.|.|. +..|++.+.++. .+|
T Consensus 430 s~~aI~s~~W~~s-------G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 SNAAITSLSWNPS-------GSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcceEEEEEcCC-------CchhhcccCCcceEec
Confidence 54 999999998 347888888887 887
No 69
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.9e-26 Score=213.48 Aligned_cols=231 Identities=16% Similarity=0.141 Sum_probs=166.4
Q ss_pred CCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 135 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 135 ~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
.+|.+.|++++|+| ++++|++| .|++|++||+...+. ..........+.+|...|.+++|+|++.++|++++.|++|
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 79999999999999 88999999 999999999974321 0000000013478999999999999864799999999999
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 291 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~ 291 (421)
++||+.++... ..+.. |...|.+++|+|+|.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus 151 rIWDl~tg~~~----~~l~~-------------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 151 NVWDVERGKAV----EVIKC-------------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEECCCCeEE----EEEcC-------------CCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 99999986533 33333 4778999999999999999876 9999999997 7788888887653
Q ss_pred ccccccccCCCcceeeeEEEEcCCCCEEEEee----CCCeEEEEecCCCCCceeEEecCCC-CccceeeecCCccccccc
Q 014644 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGS----YSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRARRSSL 366 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s----~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 366 (421)
.. ..+.|.+++..+++++ .|+.|++||+++..........+.. .+....|.++ .
T Consensus 213 ~~--------------~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d-------~ 271 (493)
T PTZ00421 213 KS--------------QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED-------T 271 (493)
T ss_pred cc--------------eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC-------C
Confidence 21 3678899877777654 4799999999876544444443433 3334456665 3
Q ss_pred ceeeeec-ccCc-ccCCC--CCccccc-cccccCeEEEEEccCC
Q 014644 367 SNLTRGL-YRQA-HENSS--SGHHELS-YNLSSKLLHLAWHPTT 405 (421)
Q Consensus 367 ~~l~~g~-~d~~-~iw~~--~~~~~~~-~~~~~~v~~~~~spd~ 405 (421)
..|++++ .|+. ++|+. +...... ..+...+..++|.|..
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3677766 4888 99932 2222221 2334567778888763
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.3e-26 Score=204.52 Aligned_cols=239 Identities=17% Similarity=0.226 Sum_probs=196.8
Q ss_pred eecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC
Q 014644 132 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 210 (421)
Q Consensus 132 ~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~ 210 (421)
.+ .+|.+.|.+++|+|++++|+++ .|+.+++|++. ..+....+ ..|...+..+.|+|++ +.+++++.|+
T Consensus 4 ~~-~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~~l~~~~~~~ 73 (289)
T cd00200 4 TL-KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTL-------KGHTGPVRDVAASADG-TYLASGSSDK 73 (289)
T ss_pred Hh-cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEE-------ecCCcceeEEEECCCC-CEEEEEcCCC
Confidence 44 6899999999999999999999 89999999998 34333332 5688889999999998 8999999999
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcceeEEeecc
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
.|++||+..++.. ..+.. |...+.++.|+|+++++++++ ++.+++||+++ ++....+..|.
T Consensus 74 ~i~i~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~ 135 (289)
T cd00200 74 TIRLWDLETGECV----RTLTG-------------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRGHT 135 (289)
T ss_pred eEEEEEcCcccce----EEEec-------------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEeccCC
Confidence 9999999875432 22333 366899999999999999887 59999999985 77777777666
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccccee
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 369 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (421)
..+ .+++|+|+++++++++.||.|++||++++ .....+..|...+..+.+.++ + ..+
T Consensus 136 ~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~--~-----~~l 192 (289)
T cd00200 136 DWV---------------NSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPD--G-----EKL 192 (289)
T ss_pred CcE---------------EEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCC--c-----CEE
Confidence 543 78999999999999988999999999876 566777889899999999988 3 378
Q ss_pred eeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 370 TRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 370 ~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
++++.++. ++|+. +........+...+.+++|+|++.++++++ ++.+++|+.
T Consensus 193 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred EEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 88888888 99943 344444447788999999999999999998 888999973
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=212.19 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=194.5
Q ss_pred eeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 205 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 205 (421)
+.+..+ .+|+..|.++.|.| .+.+|+++ .|+.|+||++...+.+++++ .+|..+|..++|+++| ..+++
T Consensus 205 k~~~~~-~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-------~gH~k~Vrd~~~s~~g-~~fLS 275 (503)
T KOG0282|consen 205 KLSHNL-SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-------KGHRKPVRDASFNNCG-TSFLS 275 (503)
T ss_pred hheeec-cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-------hcchhhhhhhhccccC-Ceeee
Confidence 345567 89999999999999 89999998 99999999998667788755 8999999999999999 99999
Q ss_pred EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEec-CCeEEEEECCCCCccee
Q 014644 206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVA 283 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~i~d~~~~~~~~~ 283 (421)
++.|+.|++||+.+|+.. ..+.. ...++++.|.||+ +.+++|. ++.|+.||+++ ++.++
T Consensus 276 ~sfD~~lKlwDtETG~~~----~~f~~--------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvq 336 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVL----SRFHL--------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQ 336 (503)
T ss_pred eecceeeeeeccccceEE----EEEec--------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHH
Confidence 999999999999999865 44444 5678999999998 5666664 59999999997 99998
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 363 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (421)
.+..|-+.+ ..+.|-++|+.+++.++|++++||+.+..-........+.....++...|.
T Consensus 337 eYd~hLg~i---------------~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~----- 396 (503)
T KOG0282|consen 337 EYDRHLGAI---------------LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN----- 396 (503)
T ss_pred HHHhhhhhe---------------eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-----
Confidence 888877755 789999999999999999999999998774444455555556667777776
Q ss_pred cccceeeeecccCc-ccCCCCC-----ccccccccc--cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 364 SSLSNLTRGLYRQA-HENSSSG-----HHELSYNLS--SKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 364 ~~~~~l~~g~~d~~-~iw~~~~-----~~~~~~~~~--~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
...++.-+.|.. .++.... ......+|. +--..+.|||||.+|++|. ++.+++|+
T Consensus 397 --~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 397 --GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred --CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 337777777776 6652211 112223443 3345789999999999999 66699996
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.8e-27 Score=189.50 Aligned_cols=276 Identities=13% Similarity=0.135 Sum_probs=204.5
Q ss_pred ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCc-eeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
+...-.-++.|.+++|+| ....+++++|.|++||+|+++.. .+.
T Consensus 20 ~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~---------------------------------- 64 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLV---------------------------------- 64 (347)
T ss_pred eecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecCCccc----------------------------------
Confidence 333334468899999953 25678889999999999999873 211
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
+ +.. ..|.++|.+++|+.||..+++| .|+.+++||+. .++...+
T Consensus 65 ------------------------~-ka~-~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~~~v-------- 109 (347)
T KOG0647|consen 65 ------------------------P-KAQ-QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQVSQV-------- 109 (347)
T ss_pred ------------------------c-hhh-hccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCeeee--------
Confidence 0 111 6789999999999999999999 99999999999 4554433
Q ss_pred CccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 184 DDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
..|.++|..+.|-+.. ...|++||.|++|++||+|+.... ..+.. .+.+.++..- ..++
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~ 169 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMA 169 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--Ccee
Confidence 6799999999998765 138999999999999999986543 34444 3456555543 3455
Q ss_pred EEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-Cce
Q 014644 263 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGG 340 (421)
Q Consensus 263 ~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~ 340 (421)
+.+. ++.|.+|+++......+....+-.. -+++++..+|....+.|+-+|.+-|..++.+. ...
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 5554 4899999997644433333222111 12688888887777999999999999998742 334
Q ss_pred eEEecCCC---------CccceeeecCCcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeE
Q 014644 341 ITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLI 408 (421)
Q Consensus 341 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~l 408 (421)
..++.|+. .|++++|.|- ...|++.+.||. ..|+.+ ..+.....+..+|++.+|+.+|.++
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~-------hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPV-------HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecc-------cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 56677763 4788999997 448999999999 999544 3445556788999999999999999
Q ss_pred EEec
Q 014644 409 ACAN 412 (421)
Q Consensus 409 a~~~ 412 (421)
|.+.
T Consensus 309 aYA~ 312 (347)
T KOG0647|consen 309 AYAL 312 (347)
T ss_pred EEEe
Confidence 9765
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.7e-27 Score=200.08 Aligned_cols=273 Identities=18% Similarity=0.200 Sum_probs=211.0
Q ss_pred CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE-Eeeec----C-CCCCcccccccccccceeec
Q 014644 23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM----D-HFPFVSSENTLLAEKNFMNE 96 (421)
Q Consensus 23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~----~-~~~~v~~~~~~~~~~~~~~~ 96 (421)
..++..-..|.-+|.++.+ +++..+.++++.|++|.=|++.++... .+... . +..+.. ...-.+.+.++++
T Consensus 132 s~~~~~~~~H~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k-~~r~~h~keil~~ 208 (479)
T KOG0299|consen 132 SSDFRVIGKHQLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLK-ESRKGHVKEILTL 208 (479)
T ss_pred cccceeeccccCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCC-cccccccceeEEE
Confidence 3444555679999999999 789999999999999999999988722 11111 0 111000 0001335678999
Q ss_pred cCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeee
Q 014644 97 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 175 (421)
Q Consensus 97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~ 175 (421)
+.++++.++++|.. +..+.+|+..+. +.++.+ .+|.+.|.+++|-.....|.++ .|++|++|+++ ....+.
T Consensus 209 avS~Dgkylatgg~--d~~v~Iw~~~t~---ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve- 280 (479)
T KOG0299|consen 209 AVSSDGKYLATGGR--DRHVQIWDCDTL---EHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE- 280 (479)
T ss_pred EEcCCCcEEEecCC--CceEEEecCccc---chhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-
Confidence 99999999999987 567899999998 888888 9999999999998877778887 99999999998 444444
Q ss_pred eecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644 176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 255 (421)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 255 (421)
++.+|++.|.++.-..-+ +.+-.|+.|+++++|++..... .++.+ +.+.+.+++|
T Consensus 281 ------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lifrg-------------~~~sidcv~~ 335 (479)
T KOG0299|consen 281 ------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIFRG-------------GEGSIDCVAF 335 (479)
T ss_pred ------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----eeeeC-------------CCCCeeeEEE
Confidence 458999999999887776 6666667999999999965331 34444 3678999999
Q ss_pred cCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 256 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 256 s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
-. ...+++|++ |.|.+|++.+ .+++.+.....+..+.+.....+ +++++++..|...++++|+.+|.|++|.+.
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEec
Confidence 85 557888877 9999999986 88888777655554443222333 577999999999999999999999999999
Q ss_pred CC
Q 014644 335 VG 336 (421)
Q Consensus 335 ~~ 336 (421)
.+
T Consensus 411 ~g 412 (479)
T KOG0299|consen 411 DG 412 (479)
T ss_pred CC
Confidence 87
No 74
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=188.41 Aligned_cols=248 Identities=14% Similarity=0.119 Sum_probs=193.7
Q ss_pred cCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEEEEEcCC
Q 014644 134 PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRG 210 (421)
Q Consensus 134 ~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~d~ 210 (421)
..+|.+.|.++...--|+.||++ .|++|+|+.++.+++.... .++.+|.++|+.++|.. .| .+|++++.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 37899999999888889999999 9999999999966642322 25699999999999965 56 9999999999
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec-CCeEEEEECCCCCc--ceeEE
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIRMDST--PVATF 285 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~~~i~i~d~~~~~~--~~~~~ 285 (421)
.|.||.-.+++-. ....+ ..|...|++++|.|. |-.|++++ ||.|.|.+.+..+. ..+..
T Consensus 81 kVIiWke~~g~w~--k~~e~-------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 81 KVIIWKEENGRWT--KAYEH-------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred eEEEEecCCCchh--hhhhh-------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 9999998887432 12223 445899999999996 55666664 59999999986522 23334
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCC---C-----------CEEEEeeCCCeEEEEecCCCC-CceeEEecCCCCc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNEN 350 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~-----------~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 350 (421)
..|...+ .+++|.|. | +.|++|+.|..|+||+...+. .+..+|++|.+.|
T Consensus 146 ~aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 146 FAHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred hcccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 5566544 78999985 4 569999999999999998764 2356699999999
Q ss_pred cceeeecCCcccccccceeeeecccCc-ccCCCCCc-----cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-----~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+.++++|...- +...||+++.||. -||+.++. ...+..+...+..++||+.|++||+++ ++++.+|.
T Consensus 211 RDVAwaP~~gl---~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 211 RDVAWAPSVGL---PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhhccccCC---CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999998421 2468999999999 99933322 122345778899999999999999887 66799984
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=186.06 Aligned_cols=222 Identities=18% Similarity=0.296 Sum_probs=186.0
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|..+|..++- +.|...|++|+.|+.|.+||+++++
T Consensus 56 sghG~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGk----------------------------------------- 92 (307)
T KOG0316|consen 56 SGHGHEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGK----------------------------------------- 92 (307)
T ss_pred cCCCceeeeccc--cccccccccCCCCceEEEEEcccCe-----------------------------------------
Confidence 378999999998 6788899999999999999999975
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~ 187 (421)
..+.+ .+|.+.|+.++|+.+...+++| .|.++++||.+... ++++++ ....
T Consensus 93 -------------------v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-------dea~ 145 (307)
T KOG0316|consen 93 -------------------VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-------DEAK 145 (307)
T ss_pred -------------------eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-------hhhc
Confidence 33445 8999999999999999999999 99999999998432 344443 5667
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
+.|.++..+. ..|++|+.||++|.||++.|+.. ..+-+ .+|+++.|++|++..++++.
T Consensus 146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred CceeEEEecc---cEEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeec
Confidence 8899998774 66999999999999999998754 23333 48999999999999888875
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 346 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 346 (421)
+++++.|-.+ ++.++.+++|....+++ .+++......+++||+||.|++||+... .....+..+
T Consensus 204 ~stlrLlDk~t-GklL~sYkGhkn~eykl-------------dc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~ 268 (307)
T KOG0316|consen 204 DSTLRLLDKET-GKLLKSYKGHKNMEYKL-------------DCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVV 268 (307)
T ss_pred cceeeecccch-hHHHHHhcccccceeee-------------eeeecccceeEEeccCCceEEEEEeccc-eeeeeeccC
Confidence 9999999987 99999999998765443 6788888889999999999999999987 666677777
Q ss_pred CCC-ccceeeecC
Q 014644 347 KNE-NRKPILQAA 358 (421)
Q Consensus 347 ~~~-~~~~~~~~~ 358 (421)
... +..+.+.|.
T Consensus 269 ~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 269 STVIVTDLSCHPT 281 (307)
T ss_pred CceeEEeeecccC
Confidence 666 788888887
No 76
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.4e-26 Score=231.21 Aligned_cols=243 Identities=15% Similarity=0.110 Sum_probs=188.6
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
..|.+.|.+++|+|++++|++| .|++|+||+.................+. +...+.+++|+|....+|++++.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4589999999999999999999 9999999998621100000000000112 3467899999986448999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 291 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~ 291 (421)
+||+.+++.. ..+.. |...|.+++|+| ++.+|++++. +.|++||+++ +..+..+..+..
T Consensus 559 lWd~~~~~~~----~~~~~-------------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~~~~- 619 (793)
T PLN00181 559 VWDVARSQLV----TEMKE-------------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKTKAN- 619 (793)
T ss_pred EEECCCCeEE----EEecC-------------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEecCCC-
Confidence 9999876533 33334 488999999997 7889999876 9999999986 777777664432
Q ss_pred ccccccccCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceee
Q 014644 292 RPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT 370 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (421)
+ .++.|+ +++.+|++|+.||.|++||+++.......+.+|...+..+.|... ..|+
T Consensus 620 v---------------~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~--------~~lv 676 (793)
T PLN00181 620 I---------------CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS--------STLV 676 (793)
T ss_pred e---------------EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC--------CEEE
Confidence 2 688885 579999999999999999998765456788899999999999632 2799
Q ss_pred eecccCc-ccCCCC--------CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 371 RGLYRQA-HENSSS--------GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 371 ~g~~d~~-~iw~~~--------~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+++.|+. ++|+.. ..+....+|...+..++|+|++++||+|+ ++.+++|+
T Consensus 677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999 999432 23445668888999999999999999999 56699996
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.2e-27 Score=196.65 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=199.1
Q ss_pred cccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 29 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
..||.++|.++.|....+ ...|++++.|.++++|.++.++...
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~------------------------------------ 183 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV------------------------------------ 183 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh------------------------------------
Confidence 468999999999963222 4579999999999999998765110
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeec-------
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM------- 178 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~------- 178 (421)
++++.- .||...|.+++..++|..+++| .|.+|++|+..... ..+.-...
T Consensus 184 --------------------~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 184 --------------------KALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred --------------------hHHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 222222 6999999999999999999999 99999999933110 00100000
Q ss_pred ---------CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccc
Q 014644 179 ---------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 249 (421)
Q Consensus 179 ---------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 249 (421)
...++.+|.++|.++.|++. ..+++++.|.+|+.||+.+++.. ..+.. ...
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~~--------------~ks 302 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK----STLTT--------------NKS 302 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce----eeeec--------------Ccc
Confidence 01346899999999999994 68999999999999999998755 22222 457
Q ss_pred eeEEEEcCCCCEEEEecC-CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCC
Q 014644 250 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYS 325 (421)
Q Consensus 250 v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~d 325 (421)
..++..+|..++|++|+. ..|++||.++.. -+...+.+|..++ .++.|+|.. ..|++|+.|
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecC
Confidence 899999999999999865 999999998743 3456788999876 799999964 458899999
Q ss_pred CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 326 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 326 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
+++++||+++.......+.+|.+.|.++.|... ..+++|+.|.+ +|+
T Consensus 368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~--------~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG--------GLIVSGGADNKLRIF 415 (423)
T ss_pred CeEEEEEeccCCCcceeeccCCceEEEEeccCC--------ceEEeccCcceEEEe
Confidence 999999999987789999999999999988754 27999999998 887
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-26 Score=205.90 Aligned_cols=234 Identities=17% Similarity=0.179 Sum_probs=186.9
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
.+.|+++.|+++|.+|+.| .+|.|.|||.. ..+..+ ++.+ |...|.+++|+. ..+.+|+.|+.|..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~-------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTR-------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNH 285 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccc-------cccCCcCceeEEEeccC---ceEEEecCCCcEEEE
Confidence 7789999999999999999 99999999998 333333 3356 999999999993 679999999999999
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK 294 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 294 (421)
|++..+... ..+. +|...|..++|++|+.++|+|+. +.+.|||... .++...+..|...+
T Consensus 286 dvR~~~~~~---~~~~-------------~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAV-- 346 (484)
T KOG0305|consen 286 DVRISQHVV---STLQ-------------GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAV-- 346 (484)
T ss_pred EEecchhhh---hhhh-------------cccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceee--
Confidence 999875431 2233 45899999999999999999865 9999999965 78888898998865
Q ss_pred cccccCCCcceeeeEEEEcC-CCCEEEEee--CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644 295 LCDLYNNDSIFDKFECSVSG-DGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
..++|+| ....||+|+ .|+.|++||..++... ..+ --...|..+.|++.. + .-....
T Consensus 347 -------------KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-~~v-dtgsQVcsL~Wsk~~--k---Ei~sth 406 (484)
T KOG0305|consen 347 -------------KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-DSV-DTGSQVCSLIWSKKY--K---ELLSTH 406 (484)
T ss_pred -------------eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-ccc-ccCCceeeEEEcCCC--C---EEEEec
Confidence 7899999 567788765 5999999999987332 222 234678899999872 2 112233
Q ss_pred ecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 372 GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 372 g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
|..+.. .|| .....+....+|..+|..++++|||..+++|+ +.+|++|+.
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 444555 899 44567778889999999999999999999998 677999973
No 79
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.4e-26 Score=209.86 Aligned_cols=234 Identities=17% Similarity=0.230 Sum_probs=167.4
Q ss_pred ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+|.+.|.+++| +|+ +.+|++|+.|++|+|||+.++..... . .
T Consensus 71 ~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~--i------------------------------- 114 (568)
T PTZ00420 71 KGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVK-E--I------------------------------- 114 (568)
T ss_pred cCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-c--c-------------------------------
Confidence 479999999999 565 78999999999999999976421000 0 0
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
..++..+ .+|...|.+++|+|++..+ +++ .|++|++||+++ ++....+ . |
T Consensus 115 ------------------~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i-------~-~ 166 (568)
T PTZ00420 115 ------------------KDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQI-------N-M 166 (568)
T ss_pred ------------------ccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEE-------e-c
Confidence 0223345 7899999999999998765 577 899999999984 4433332 2 4
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce-----eEEEEcCCCCE
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDGQH 261 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~ 261 (421)
...|.+++|+|+| .+|++++.|+.|++||++++... ..+..| .+.+ ....|++++.+
T Consensus 167 ~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~gH-------------~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 167 PKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHIH-------------DGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred CCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEecc-------------cCCceeEEEEeeeEcCCCCE
Confidence 5779999999999 99999999999999999987644 334443 3332 33456689888
Q ss_pred EEEec-C----CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE-cCCCCEEEEeeCCCeEEEEecCC
Q 014644 262 LLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 262 l~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
|++++ + ++|+|||++..+.++..+..+.... . ....| .++|.++++|+.|+.|++|++..
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-P-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-c-------------eEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 88753 3 3799999986567776665444321 0 11233 44689999999999999999987
Q ss_pred CCCceeEEecCCCCccceeeecCC
Q 014644 336 GSAGGITVEAGKNENRKPILQAAP 359 (421)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
+......-..+..+.+.++|.|.+
T Consensus 295 ~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 295 GSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CcEEeecccccCCCccceEEcccc
Confidence 622222222355778888988874
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=8.2e-27 Score=185.62 Aligned_cols=235 Identities=16% Similarity=0.122 Sum_probs=193.2
Q ss_pred eeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 131 KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 131 ~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
+.+ ++|...|.+++|+.+|..|++| .|+++.+|+++. ..... .....+|.+.|-.++|+|..+.++++++.|
T Consensus 14 r~~-~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~-~r~~~-----~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 14 REL-QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER-DRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred HHh-hhhhhcceEEEEcccCceeeecccCCceEEEEecc-hhhhh-----hhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 444 7899999999999999999999 999999999983 33222 135588999999999999988999999999
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~ 288 (421)
.+|++||++.++.+ ..... ...-.-+.|+|+|++++.++. ..|.+.|.++ .+.+...+-.
T Consensus 87 k~ir~wd~r~~k~~----~~i~~--------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~~~~~~~ 147 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCT----ARIET--------------KGENINITWSPDGEYIAVGNKDDRITFIDART-YKIVNEEQFK 147 (313)
T ss_pred ceEEEEEeccCcEE----EEeec--------------cCcceEEEEcCCCCEEEEecCcccEEEEEecc-cceeehhccc
Confidence 99999999998765 22222 344567899999999999876 8999999986 5554444322
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccce
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 368 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (421)
.. +..++|+.++.+++.....|.|.|...... +.+..+++|....-++.|.|+ |+ +
T Consensus 148 ~e----------------~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~--Gr-----y 203 (313)
T KOG1407|consen 148 FE----------------VNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPD--GR-----Y 203 (313)
T ss_pred ce----------------eeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCC--Cc-----e
Confidence 22 257889877888777777899999998865 678999999999999999998 55 9
Q ss_pred eeeecccCc-ccCCCCCcccc--ccccccCeEEEEEccCCCeEEEecCCc
Q 014644 369 LTRGLYRQA-HENSSSGHHEL--SYNLSSKLLHLAWHPTTNLIACANGNS 415 (421)
Q Consensus 369 l~~g~~d~~-~iw~~~~~~~~--~~~~~~~v~~~~~spd~~~la~~~~~~ 415 (421)
||+|+.|.. .+|+.++++.. ...+.-+|+.++||-||++||+|+.|.
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 999999999 99988887664 346778999999999999999999764
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=212.82 Aligned_cols=269 Identities=14% Similarity=0.199 Sum_probs=222.0
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
+...+.+..| . ...+++++.|++|++||..++.
T Consensus 207 ~~~~~~~~q~--~--~~~~~~~s~~~tl~~~~~~~~~------------------------------------------- 239 (537)
T KOG0274|consen 207 DDHVVLCLQL--H--DGFFKSGSDDSTLHLWDLNNGY------------------------------------------- 239 (537)
T ss_pred Ccchhhhhee--e--cCeEEecCCCceeEEeecccce-------------------------------------------
Confidence 4567778887 3 6789999999999999988764
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+...+ .||.+.|.++++..-+.+|++| .|.++++||.. .+++..++ .+|.+.|
T Consensus 240 ----------------~i~~~l-~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l-------~gh~stv 294 (537)
T KOG0274|consen 240 ----------------LILTRL-VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSL-------QGHTSSV 294 (537)
T ss_pred ----------------EEEeec-cCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEe-------cCCCceE
Confidence 222224 7999999999998878899999 89999999988 78888876 7999999
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
.++...+ ..+++|+.|.+|++|++.++... +++.+ |..+|.++..+ +.++++|+. ++
T Consensus 295 ~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l----~l~~~-------------h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 295 RCLTIDP---FLLVSGSRDNTVKVWDVTNGACL----NLLRG-------------HTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred EEEEccC---ceEeeccCCceEEEEeccCcceE----EEecc-------------ccccEEEEEec--CCEEEEEecCce
Confidence 9988665 56888999999999999987654 55554 48899999998 788998876 99
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 349 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 349 (421)
|++||+.+ +++++.+.+|...+ .++.+.+. ..+++|+.|+.|++||+.+......++++|..-
T Consensus 353 v~VW~~~~-~~cl~sl~gH~~~V---------------~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 353 VKVWDPRT-GKCLKSLSGHTGRV---------------YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred EEEEEhhh-ceeeeeecCCcceE---------------EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 99999996 99999999999876 67777554 889999999999999999876788999999999
Q ss_pred ccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccc-cccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644 350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~-~~~~v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
+..+.+... .|.+++.|+. ++| ..++......+ +...|..+++. +..+|+++.++.+.+|+.
T Consensus 416 v~~l~~~~~---------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 416 VSSLLLRDN---------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccccccccc---------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEec
Confidence 987777655 8999999999 999 45555555555 56888888887 444555555778999973
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=198.58 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=204.4
Q ss_pred ccccccEEEEEEEEcCCC-CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~-~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
-||.+.|.+++= +|.. ..+++|+.||.|+|||+.+.+...... .|.+.|..+++. . ..++..|
T Consensus 63 ~gHrdGV~~lak--hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~------------~-~~~~tvg 126 (433)
T KOG0268|consen 63 DGHRDGVSCLAK--HPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVT------------Q-TSFFTVG 126 (433)
T ss_pred cccccccchhhc--CcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEec------------c-cceEEec
Confidence 389999999998 6765 789999999999999998866222211 133344333222 2 1122221
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.+.+++.|.++. .+++++ .-...+..+.-+..+..++|+ . .|-|||.. ...+++.+ .-..
T Consensus 127 ---dDKtvK~wk~~~----~p~~ti--lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-R~~Pv~sm-------swG~ 187 (433)
T KOG0268|consen 127 ---DDKTVKQWKIDG----PPLHTI--LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-RDNPVSSM-------SWGA 187 (433)
T ss_pred ---CCcceeeeeccC----Ccceee--eccccccccccccccccccccCc--eeeecccc-cCCcccee-------ecCC
Confidence 245788887765 366666 234557777777667777776 4 48899987 44444432 4456
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
+.|.++.|+|.....|+++..|+.|.+||++++....+... .-..+.|+|+|.+-.++++++
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL------------------TMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee------------------eccccceecCccccceeeccc
Confidence 77999999999877888888999999999999876633222 235589999997766777765
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 346 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 346 (421)
..++.||++.-..++..+.+|...+ .++.|+|.|+-+++||.|.+|+||.++.+..........
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred cccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence 9999999998778888888888765 899999999999999999999999998774333333444
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
-..|.++.|+.+ ..++.+|++|+. ++|
T Consensus 315 Mq~V~~Vk~S~D-------skyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 315 MQHVFCVKYSMD-------SKYIISGSDDGNVRLW 342 (433)
T ss_pred hheeeEEEEecc-------ccEEEecCCCcceeee
Confidence 567889999988 449999999999 999
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=188.11 Aligned_cols=302 Identities=13% Similarity=0.189 Sum_probs=228.1
Q ss_pred eccccccCCCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccc
Q 014644 14 KTEFQSHEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 92 (421)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 92 (421)
+..|..-...|...+.+ ||.+.|..++- ......+.+++.|.+.+||.++++
T Consensus 128 vssFk~~t~~~~lvre~~GHkDGiW~Vaa--~~tqpi~gtASADhTA~iWs~Esg------------------------- 180 (481)
T KOG0300|consen 128 VSSFKDGTVKFRLVRELEGHKDGIWHVAA--DSTQPICGTASADHTARIWSLESG------------------------- 180 (481)
T ss_pred eeeecCCceeEeehhhhcccccceeeehh--hcCCcceeecccccceeEEeeccc-------------------------
Confidence 33444444455555544 68888888877 455668888888888888888775
Q ss_pred eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC-----
Q 014644 93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL----- 166 (421)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~----- 166 (421)
.|+..| .||.+.|+++.|++.+.+++++ .|++..||..
T Consensus 181 -----------------------------------~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 181 -----------------------------------ACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred -----------------------------------cceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 666777 8999999999999999999999 9999999972
Q ss_pred -CCC--------ceee------------------eeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644 167 -EIS--------DQCF------------------NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 167 -~~~--------~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~ 219 (421)
..+ ++.. ..+.+....+.+|.+.|.+..|...| +.+++++.|.+..+||+.+
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET 303 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc
Confidence 110 0000 01222224568899999999999998 9999999999999999999
Q ss_pred ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccc
Q 014644 220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 298 (421)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 298 (421)
+... ..+.+ |....+-++-+|..+++++.+. .+.++||++..-..+..|++|...+
T Consensus 304 ge~v----~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV------ 360 (481)
T KOG0300|consen 304 GEVV----NILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV------ 360 (481)
T ss_pred Ccee----ccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce------
Confidence 8765 55555 4888999999999999998875 9999999986556788899999876
Q ss_pred cCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-
Q 014644 299 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA- 377 (421)
Q Consensus 299 ~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~- 377 (421)
+++.|.-+.+ +++|++|.+|++||+++-...+.++. -.++++.++.+.. ...++...++..
T Consensus 361 ---------TS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g-------~~iIAiPhDNRqv 422 (481)
T KOG0300|consen 361 ---------TSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG-------HPIIAIPHDNRQV 422 (481)
T ss_pred ---------eEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC-------CceEEeccCCceE
Confidence 8899987755 78999999999999998755555554 3466777777766 226788888888
Q ss_pred ccCCCC-Cccc-----cccccccCeEEEEEccC---CCeEEEecCCceEEEe
Q 014644 378 HENSSS-GHHE-----LSYNLSSKLLHLAWHPT---TNLIACANGNSLFFHY 420 (421)
Q Consensus 378 ~iw~~~-~~~~-----~~~~~~~~v~~~~~spd---~~~la~~~~~~~~i~~ 420 (421)
++++.. ..+. ...+|..-|.+++|..+ .+++.+|-+..+.-|+
T Consensus 423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred EEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 999443 2222 23478889999999544 5666666676677775
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.5e-27 Score=207.39 Aligned_cols=241 Identities=18% Similarity=0.238 Sum_probs=194.5
Q ss_pred cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644 44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 123 (421)
Q Consensus 44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 123 (421)
.+++++|+||+.||.|++|++...... .+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~-------~s-------------------------------------------- 62 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNE-------PS-------------------------------------------- 62 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCC-------cc--------------------------------------------
Confidence 366889999999999999998764310 00
Q ss_pred cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEE-ecCCC
Q 014644 124 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYC 200 (421)
Q Consensus 124 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~ 200 (421)
..++..+ +.|.+.|+.++...+++.|+++ .|-+|++|+..... .+.++ +..|.+.|.|+++ .++.
T Consensus 63 ---~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st-------ir~H~DYVkcla~~ak~~- 130 (735)
T KOG0308|consen 63 ---TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST-------IRTHKDYVKCLAYIAKNN- 130 (735)
T ss_pred ---cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh-------hhcccchheeeeecccCc-
Confidence 0123334 7899999999999999999998 99999999998443 34444 4889999999999 6676
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 279 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~ 279 (421)
.++|+|+.|+.|.+||+..+... ....++. ........++...|.+++..+.|..|++|+- +.+++||.++ .
T Consensus 131 ~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~ 203 (735)
T KOG0308|consen 131 ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-C 203 (735)
T ss_pred eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-c
Confidence 89999999999999999987420 0111111 1111112267889999999999988888865 9999999998 8
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCC
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 359 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (421)
+.+..+++|...+ ..+-.++||..++++|.||+|++||+... ....++..|...|.++..+++
T Consensus 204 ~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~s- 266 (735)
T KOG0308|consen 204 KKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPS- 266 (735)
T ss_pred cceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCC-
Confidence 8888899999876 78899999999999999999999999876 778889999999999999887
Q ss_pred cccccccceeeeecccCc
Q 014644 360 RARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 360 ~~~~~~~~~l~~g~~d~~ 377 (421)
...+.+|+.||.
T Consensus 267 ------f~~vYsG~rd~~ 278 (735)
T KOG0308|consen 267 ------FTHVYSGGRDGN 278 (735)
T ss_pred ------cceEEecCCCCc
Confidence 669999999997
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1e-25 Score=191.40 Aligned_cols=276 Identities=17% Similarity=0.147 Sum_probs=218.0
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 113 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 113 (421)
..++++..+ +..+.+++|+.|.++.++|...++
T Consensus 220 pgi~ald~~--~s~~~ilTGG~d~~av~~d~~s~q--------------------------------------------- 252 (506)
T KOG0289|consen 220 PGITALDII--PSSSKILTGGEDKTAVLFDKPSNQ--------------------------------------------- 252 (506)
T ss_pred CCeeEEeec--CCCCcceecCCCCceEEEecchhh---------------------------------------------
Confidence 457777774 447889999999999999987753
Q ss_pred cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644 114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 192 (421)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (421)
.+.++ .||...|..+.++|+...++++ .|..|++|.... ...... ...|.++|+.
T Consensus 253 ---------------~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~-------~~~h~~~V~~ 308 (506)
T KOG0289|consen 253 ---------------ILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTS-------SRPHEEPVTG 308 (506)
T ss_pred ---------------hhhhc-cCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCccc-------ccccccccee
Confidence 34445 8999999999999999999998 999999999873 333322 3779999999
Q ss_pred EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644 193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 271 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~ 271 (421)
+..+|.| .+|++++.|++..+.|++++......... ...-.+++.+|+|||..+.+|.. +.++
T Consensus 309 ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 309 LSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDE---------------TSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred eeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeec---------------cccceeEEeeEcCCceEEeccCCCceEE
Confidence 9999999 99999999999999999998654211110 01346899999999999999976 9999
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcc
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 351 (421)
|||+.. +..+..|.+|.+.+ ..++|+.+|-||+++++|+.|++||++..............++.
T Consensus 373 iwdlks-~~~~a~Fpght~~v---------------k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 373 IWDLKS-QTNVAKFPGHTGPV---------------KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred EEEcCC-ccccccCCCCCCce---------------eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 999986 77889999999876 89999999999999999999999999987433333333445788
Q ss_pred ceeeecCCcccccccceeeeecccCc-ccCC----CCCccccccccccCeEEEEEccCCCeEEEecCCc-eEEE
Q 014644 352 KPILQAAPRARRSSLSNLTRGLYRQA-HENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFH 419 (421)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~i~ 419 (421)
++.|... |. +|+.++.+-. .+.. ....+.....|.+..+.+.|....+++++++-|. ++++
T Consensus 437 s~~fD~S--Gt-----~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 437 SLSFDQS--GT-----YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEcCC--CC-----eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 8888877 44 8888866655 4442 2234455556777888999999999999999655 5554
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-25 Score=201.31 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=188.3
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
++.|+++.| +++|.+|++|..+|.|.|||..+.+..+.....|...|-+++|. ...+..|+.
T Consensus 217 ~~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--------------~~~lssGsr-- 278 (484)
T KOG0305|consen 217 EELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--------------SSVLSSGSR-- 278 (484)
T ss_pred CCceEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--------------CceEEEecC--
Confidence 789999999 79999999999999999999887663333232244434444433 223333333
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
++.+..+|+.... ....++ .+|...|-.+.|++|+.++|+| .|+.+.|||.......++ +..|.++|.
T Consensus 279 ~~~I~~~dvR~~~--~~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aAVK 347 (484)
T KOG0305|consen 279 DGKILNHDVRISQ--HVVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAAVK 347 (484)
T ss_pred CCcEEEEEEecch--hhhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eeccceeee
Confidence 4456666666542 222235 8999999999999999999999 999999999963333333 278999999
Q ss_pred EEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c--
Q 014644 192 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-- 266 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-- 266 (421)
.++|+|-...+||+|+ .|+.|++||..++... ..... ...|..+.|++..+-|+++ +
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCC
Confidence 9999998778999876 8999999999988755 33443 5789999999998777765 2
Q ss_pred CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
++.|.||++.+ .+.+..+.+|...+ ..++++|||..+++|+.|.++++|++-..
T Consensus 410 ~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 38999999987 78888899999865 79999999999999999999999998764
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=182.20 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=195.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|.+.|++++| +.||..|+|++.|++|+||++.+.+.+.-
T Consensus 83 KgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH------------------------------------- 123 (420)
T KOG2096|consen 83 KGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH------------------------------------- 123 (420)
T ss_pred hccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh-------------------------------------
Confidence 489999999999 79999999999999999999987441110
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCce---eeeeeecCCCCC-
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ---CFNIVDMKPSNM- 183 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~---~~~~~~~~~~~~- 183 (421)
++++.- -.-+..+.++|+||.+-++.+ ...++++|.+..... ....+......+
T Consensus 124 ------------------r~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~ 183 (420)
T KOG2096|consen 124 ------------------RCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFE 183 (420)
T ss_pred ------------------hHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccc
Confidence 111111 111245778999998877664 777899998752211 111110000011
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
+.|+..+..+-..-++ .+|++++.|..|.+|+++ |+.. ..++. ........+.||+|++++
T Consensus 184 ~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~~n~~aavSP~GRFia 244 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQSSNYDAAVSPDGRFIA 244 (420)
T ss_pred hhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccccccceeeCCCCcEEE
Confidence 3466677777777776 999999999999999998 5443 22222 133456788999999999
Q ss_pred EecC-CeEEEEECCC--CC-----cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 264 SRDY-MNLKLWDIRM--DS-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
++.- ..+++|..-- .+ ..+..+++|...+ ..++|+|+++.+++.|.||+++|||.+-
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 9876 8899998731 12 2345678888865 8999999999999999999999999764
Q ss_pred CC------Ccee----EEecCCCCccceeeecCCcccccccceeeeecccCcccC--CCCCcccc-ccccccCeEEEEEc
Q 014644 336 GS------AGGI----TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHEL-SYNLSSKLLHLAWH 402 (421)
Q Consensus 336 ~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~~~~~~~~-~~~~~~~v~~~~~s 402 (421)
.. ..+. .+..-.+.--.+..+|. +. .||.......+++ ..++.... -.-|...|.+++|+
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~--g~-----~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS--GD-----SLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYS 382 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCC--Cc-----EEEeecCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence 21 1111 11111222225566666 33 5655554444555 22322222 23578899999999
Q ss_pred cCCCeEEEecCCceEEE
Q 014644 403 PTTNLIACANGNSLFFH 419 (421)
Q Consensus 403 pd~~~la~~~~~~~~i~ 419 (421)
|+|+++|++++..++++
T Consensus 383 ~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 383 SDGKYIATCGDRYVRVI 399 (420)
T ss_pred CCCcEEeeecceeeeee
Confidence 99999999998777765
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8.4e-26 Score=195.94 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=210.3
Q ss_pred cccceeeccCCCCceeeeecccccccceeEEeecccc-eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644 89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 166 (421)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~ 166 (421)
..+.|.++.+.+.+..+++|+. +..+++||..... ..+.-+.+.......|++++|++.|..|++. .....+|+|-
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~--Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSL--DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred CceEEEEeeecCCCceeeeccc--cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 3456788999999999999998 6689999987532 2233444445667789999999999888886 8888999998
Q ss_pred CCCceeeeeeecCC-----CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcc
Q 014644 167 EISDQCFNIVDMKP-----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 241 (421)
Q Consensus 167 ~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 241 (421)
+ +.+..+.....+ .+-.+|...++|.+|+|.....+++++.||++|+||+...... .+++.....
T Consensus 244 d-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~------ 313 (641)
T KOG0772|consen 244 D-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA------ 313 (641)
T ss_pred C-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeeccC------
Confidence 7 544444332111 2337899999999999998789999999999999999875422 222222000
Q ss_pred cccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC-cc-eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644 242 FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS-TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 318 (421)
Q Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 318 (421)
.+..-+++.++|+|||++||+|.. |.|.+|+..... .+ ...-.+|.... ++++++||+||++
T Consensus 314 --~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~-------------~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 314 --GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ-------------DITSISFSYDGNY 378 (641)
T ss_pred --CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC-------------ceeEEEeccccch
Confidence 122457899999999999999865 999999986421 12 22233454422 3489999999999
Q ss_pred EEEeeCCCeEEEEecCCCCCceeEEecCC--CCccceeeecCCcccccccceeeeecccC----c-ccC--CCC--Cccc
Q 014644 319 FATGSYSNLLRIFSHGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYRQ----A-HEN--SSS--GHHE 387 (421)
Q Consensus 319 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~d~----~-~iw--~~~--~~~~ 387 (421)
|++-+.|+++++||++...+.+.+..+-. .+-..++|+|+ ..+|++|..-- . .|+ +.. +...
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd-------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD-------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC-------ceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 99999999999999998766655555443 34567889998 23677764221 1 233 211 2222
Q ss_pred cccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 388 LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 388 ~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.+.-....|..+.|||.-+.|.+|+ ++++++|+
T Consensus 452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 2222366788999999977766666 67788875
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8e-25 Score=178.49 Aligned_cols=264 Identities=13% Similarity=0.155 Sum_probs=199.1
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
++.|.+|+| ++.++.|++++.||++++||+...+++
T Consensus 13 ~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------------ 48 (323)
T KOG1036|consen 13 EDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------------ 48 (323)
T ss_pred hhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhh------------------------------------------
Confidence 567899999 577888999999999999999875311
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
.. -.|..++.+++|.++ ..+++| -||.|+++|+.+ +.... +..|..+|.
T Consensus 49 ------------------~~--~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~-~~~~~--------igth~~~i~ 98 (323)
T KOG1036|consen 49 ------------------LK--FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT-GNEDQ--------IGTHDEGIR 98 (323)
T ss_pred ------------------hh--eecCCceeeeeccCC-ceEEEeccCceEEEEEecC-Cccee--------eccCCCceE
Confidence 11 367889999999974 466666 999999999994 33332 267999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i 270 (421)
|+.+++.. ..+++|+.|++|++||.+..... ..++. ...|.++..+ |..|+.| .+..+
T Consensus 99 ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~----~~~d~--------------~kkVy~~~v~--g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 99 CIEYSYEV-GCVISGSWDKTIKFWDPRNKVVV----GTFDQ--------------GKKVYCMDVS--GNRLVVGTSDRKV 157 (323)
T ss_pred EEEeeccC-CeEEEcccCccEEEEeccccccc----ccccc--------------CceEEEEecc--CCEEEEeecCceE
Confidence 99999887 89999999999999999974322 22222 3467777766 6667665 45999
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC---CCceeEEecCC
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGITVEAGK 347 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~ 347 (421)
.+||+++-..+.+.- .....+ -++++++-|++.-.+++|-||.|.+=.++.. +.....+..|.
T Consensus 158 ~iyDLRn~~~~~q~r--eS~lky------------qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRR--ESSLKY------------QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred EEEEcccccchhhhc--ccccee------------EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 999998744443221 111111 1278999998888899999999988666554 13355666664
Q ss_pred ---------CCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec
Q 014644 348 ---------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 348 ---------~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~ 412 (421)
.||++++|+|- ...|++|+.||. .+|+. ...+..+..+...|..++|+-||..||+++
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~-------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPI-------HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cccCCceEEEEeceeEeccc-------cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 47899999988 348999999999 99944 345666667788899999999999999997
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=181.94 Aligned_cols=205 Identities=16% Similarity=0.246 Sum_probs=171.3
Q ss_pred cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
+.+.+++|+--|.+++| +.|.++|+||+.++.+||+|++..+
T Consensus 92 delhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~------------------------------------ 133 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPK------------------------------------ 133 (334)
T ss_pred hhhhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCC------------------------------------
Confidence 56778899999999999 7899999999999999999998754
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
.+.+.+ .+|.+.|+.+-|....+.|+++ +|++||+||.+ .+..++.+.
T Consensus 134 -----------------------App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~------ 182 (334)
T KOG0278|consen 134 -----------------------APPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE------ 182 (334)
T ss_pred -----------------------CCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe------
Confidence 222334 7999999999999988899997 99999999999 566666552
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
...+|.++..+++| .+ ++....+.|.+||..+-.++ +.+.. ...|.+...+|+...++
T Consensus 183 --~~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 183 --FNSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFV 240 (334)
T ss_pred --cCCCCcceeeccCC-CE-EEEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEE
Confidence 34679999999998 54 45566788999999986654 44444 56789999999988888
Q ss_pred EecC-CeEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 264 SRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+|+. ..++.||..+ ++.+..+ ++|.+++ .++.|+|+|..-++||+||+|+||.+..+
T Consensus 241 aGged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ecCcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCC
Confidence 8866 9999999998 7777665 7887766 89999999999999999999999998876
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-24 Score=176.02 Aligned_cols=275 Identities=13% Similarity=0.127 Sum_probs=214.4
Q ss_pred ccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E--cCCcEEEEeC
Q 014644 90 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A--DDLRINLWNL 166 (421)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~--~d~~i~lwd~ 166 (421)
...+.++.++.++..+...+. +..+++++...+ ..++++ ..+...|..+.|......++. + .|.+|+..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~--dDsl~LYd~~~g---~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSE--DDSLRLYDSLSG---KQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecC--CCeEEEEEcCCC---ceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 456777788788877777433 557899999888 888888 777778988999665555444 3 5999999999
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 246 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 246 (421)
. ..+.++.+ .||...|.+++.+|-+ ..+++++.|++|++||++..+.. ..+..
T Consensus 88 ~-dNkylRYF-------~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~-------------- 140 (311)
T KOG1446|consen 88 H-DNKYLRYF-------PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL-------------- 140 (311)
T ss_pred e-cCceEEEc-------CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------
Confidence 8 67778766 8999999999999998 99999999999999999965432 22221
Q ss_pred ccceeEEEEcCCCCEEEEecC-CeEEEEECCCC-CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644 247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 324 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~ 324 (421)
..-..++|+|.|-++|++.. ..|++||++.- +.+..++........ +...+.|||||++|+.++.
T Consensus 141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeC
Confidence 23467899999999999977 69999999874 566666655422111 1278999999999999999
Q ss_pred CCeEEEEecCCCCCceeEEecCCCCc---cceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccc-cccCeE
Q 014644 325 SNLLRIFSHGVGSAGGITVEAGKNEN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLL 397 (421)
Q Consensus 325 dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~-~~~~v~ 397 (421)
.+.+++.|.-+| .....+.++...- -...|+|+ ..++.+|+.||. .+| ..+.......+ +..++.
T Consensus 208 ~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPd-------s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 208 ASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPD-------SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred CCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCC-------CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 999999999888 5677777776554 45677888 449999999999 999 55556666666 578899
Q ss_pred EEEEccCCCeEEEecCCceEEE
Q 014644 398 HLAWHPTTNLIACANGNSLFFH 419 (421)
Q Consensus 398 ~~~~spd~~~la~~~~~~~~i~ 419 (421)
++.|+|...++|+++. .+.+|
T Consensus 280 ~~~fnP~~~mf~sa~s-~l~fw 300 (311)
T KOG1446|consen 280 CVRFNPRYAMFVSASS-NLVFW 300 (311)
T ss_pred ccccCCceeeeeecCc-eEEEE
Confidence 9999999988888775 45555
No 92
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=184.41 Aligned_cols=230 Identities=19% Similarity=0.216 Sum_probs=176.1
Q ss_pred cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
.+.+.|.+.|+.++-.+-.+..++++-+..|.|+||++...- +.+.......
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~~~~~~~--------------------------- 196 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALSEPGLEV--------------------------- 196 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhcCccccc---------------------------
Confidence 346788888888888544567788888999999999986531 1111100000
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 184 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 184 (421)
-+ ...+++.++ .+|...=+.|+|||- .-.|++| .-+.|++|...++.-.+. +..+.
T Consensus 197 ------------~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~ 254 (440)
T KOG0302|consen 197 ------------KD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----QRPFT 254 (440)
T ss_pred ------------cc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceeec-----Ccccc
Confidence 00 112677777 899999999999993 2357888 788999999985433332 23457
Q ss_pred ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
+|+..|..++|+|.....|++||.||+|+|||+|.+.... ... .+.|.+.|+.|.|+.+..+||+
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~-------------~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVS-------------TKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeE-------------eeccCCceeeEEccCCcceeee
Confidence 7999999999999988899999999999999999873210 111 1445889999999998889999
Q ss_pred ecC-CeEEEEECCC--CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCC
Q 014644 265 RDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 265 ~~~-~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~ 336 (421)
|+| |+++|||++. .++++..|+.|..++ +++.|+|. ...|++++.|..|.|||+...
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 988 9999999985 367899999999877 89999995 567888999999999999864
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=196.01 Aligned_cols=336 Identities=13% Similarity=0.171 Sum_probs=230.4
Q ss_pred EEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc---c
Q 014644 37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---T 111 (421)
Q Consensus 37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~ 111 (421)
-++.| ++....|...-.|+.++|||+++-. .+......|...|+++.-.+ +--..+..+.++-+.+ .
T Consensus 328 IA~~F--det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 328 IACQF--DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------CNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred eEEEe--cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc------ccccCcccccCCccceeEec
Confidence 34556 6778889899999999999998754 23333334555555443221 1112234455555555 3
Q ss_pred cccceeEEeecccceeeeee-------------------e--------e------cCCCCcceEEEeecCCCCEEEEE-c
Q 014644 112 ENMATKIANVGNSVHARCQK-------------------V--------Y------PHAHDFNINSISNNSDCETFVSA-D 157 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-------------------~--------~------~~~h~~~v~~l~~~~~~~~l~s~-~ 157 (421)
+++++|+|+++.....+..+ . + .-+....+++++.+|+|++||+| .
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR 479 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence 45699999988632222211 0 0 01123468999999999999999 9
Q ss_pred CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeEEEEEcCCeEEEEECCcccccccchhhhccccc
Q 014644 158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 235 (421)
Q Consensus 158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~ 235 (421)
-|++++|++. .-+... .++.|...|.|+.|+-- +.++|++++.|..|.+||+...-.. ...+..
T Consensus 480 ~GnlrVy~Lq-~l~~~~-------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld~--- 545 (1080)
T KOG1408|consen 480 GGNLRVYDLQ-ELEYTC-------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---VQTLDG--- 545 (1080)
T ss_pred cCceEEEEeh-hhhhhh-------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---hhhhcc---
Confidence 9999999998 333332 34889999999999842 2478999999999999998764322 244444
Q ss_pred cCCCcccccccccceeEEEEcCCC--CEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE
Q 014644 236 SHGSKSFFTEIIASISDIKFANDG--QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 312 (421)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
|...|+++.|..+| ..++++ .|..| .|+..........+..|..... ...+ ++++.
T Consensus 546 ----------HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~-------ktTl---YDm~V 604 (1080)
T KOG1408|consen 546 ----------HSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLS-------KTTL---YDMAV 604 (1080)
T ss_pred ----------cccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccc-------cceE---EEeee
Confidence 58999999999877 455554 44443 4444321222223333333221 1122 68999
Q ss_pred cCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC-ccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccc
Q 014644 313 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL 388 (421)
Q Consensus 313 sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~ 388 (421)
.|..+++++++.|..|+||+++.+ +..+.+.+..+. -.-+....+..|. +|++.+.|.. .++ ..+|.+..
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgi-----Y~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGI-----YLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred CCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCcc-----EEEEeecCCceEEEEeccchhhhh
Confidence 999999999999999999999998 556666554433 3334444443244 9999999999 776 67899999
Q ss_pred ccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 389 SYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 389 ~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
..+|...|+.+.|.+|.+.|++++ ++.|++|..
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 999999999999999999988777 677999963
No 94
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=8.2e-25 Score=196.18 Aligned_cols=378 Identities=12% Similarity=0.119 Sum_probs=236.5
Q ss_pred ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCC-CCCccccc-----------------ccccc
Q 014644 30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSEN-----------------TLLAE 90 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~-~~~v~~~~-----------------~~~~~ 90 (421)
-||..+|+|+.|+|..+ ...+++|+.|++|++|.++.....++....+ ..++.|+. |....
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~ 130 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQ 130 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCC
Confidence 48999999999975433 3389999999999999999655555555444 22222211 11101
Q ss_pred ccee---------------eccCCC-Ccee-eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC---
Q 014644 91 KNFM---------------NEHNPP-SFAH-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--- 150 (421)
Q Consensus 91 ~~~~---------------~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 150 (421)
..+. |++..+ ...+ ++.|+. ...+.+..-. ....+.+..+ .||.+.|++++|...+
T Consensus 131 ~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--~~~v~~~s~~-~d~f~~v~el-~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 131 DEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--KFVVDLYSSS-ADSFARVAEL-EGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc--ceEEEEeccC-CcceeEEEEe-eccchhhhhhhhhccCCCc
Confidence 1111 111111 1111 111111 1133333333 2234556677 8999999999997643
Q ss_pred CEEEEE-cCCcEEEEeCCCCce--------------------eeeeee--cC-CCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 151 ETFVSA-DDLRINLWNLEISDQ--------------------CFNIVD--MK-PSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 151 ~~l~s~-~d~~i~lwd~~~~~~--------------------~~~~~~--~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
-+|+++ .|..||||.+...+. ....+. +. ...+.+|.+.|+++.|+|.+ ..|+++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSA 285 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSA 285 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheec
Confidence 367777 999999998763330 000000 00 02345999999999999998 899999
Q ss_pred EcCCeEEEEECCccccc----------c------------c------------chhhhccc-cccCCCccccccccccee
Q 014644 207 SSRGFVRLVDMRQSALC----------D------------H------------SARILRDA-AESHGSKSFFTEIIASIS 251 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~----------~------------~------------~~~~~~~h-~~~~~~~~~~~~~~~~v~ 251 (421)
+.|.++.+|......-+ . . -.+.|... ...........+|...|.
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 99999999976653110 0 0 00011100 000011233578899999
Q ss_pred EEEEcCCCCEEEEec-CCeEEEEECCCCC----------------------------------cceeEEeeccC------
Q 014644 252 DIKFANDGQHLLSRD-YMNLKLWDIRMDS----------------------------------TPVATFKIHEH------ 290 (421)
Q Consensus 252 ~~~~s~~~~~l~~~~-~~~i~i~d~~~~~----------------------------------~~~~~~~~~~~------ 290 (421)
.++|+|.|++|++.+ |.+-|+|-.-..+ +.++.|+.+..
T Consensus 366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence 999999999998764 4666665432000 01111110000
Q ss_pred -----------------cccc------------------------------ccccc---------------C----CCcc
Q 014644 291 -----------------LRPK------------------------------LCDLY---------------N----NDSI 304 (421)
Q Consensus 291 -----------------~~~~------------------------------~~~~~---------------~----~~~~ 304 (421)
.++. .+.+. + ...-
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 0000 00000 0 2223
Q ss_pred eeeeEEEEcCCCCEEEEeeCC-----CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-c
Q 014644 305 FDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H 378 (421)
Q Consensus 305 ~~~~~~~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~ 378 (421)
|+|++++.+|+++++|+++.. ..|++|+..+. ...+.+++|.-.|+.++|+|+ ++ +|++.++|+. .
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpd--g~-----~LLsvsRDRt~s 597 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPD--GR-----YLLSVSRDRTVS 597 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCC--Cc-----EEEEeecCceEE
Confidence 347999999999999998754 46999999887 556689999999999999999 55 9999999999 9
Q ss_pred cCCCCCc------cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 379 ENSSSGH------HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 379 iw~~~~~------~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+|...+. ......|+.-|++++|+||..++|++| +..+.+|.
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9933321 223567889999999999999999999 55688884
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-24 Score=173.95 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=192.2
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
+||..+++.+.++.+|.+|+++ .|.+..+|--. +++.+-+ ..+|++.|+|+..+-+. ..+++|+.|.+++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGt-------y~GHtGavW~~Did~~s-~~liTGSAD~t~k 77 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGT-------YDGHTGAVWCCDIDWDS-KHLITGSADQTAK 77 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeee-------ecCCCceEEEEEecCCc-ceeeeccccceeE
Confidence 7999999999999999999999 99999999875 4555544 38999999999999998 9999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC------CeEEEEECCCC------Ccc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------MNLKLWDIRMD------STP 281 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~i~i~d~~~~------~~~ 281 (421)
+||+.+|+.. ..+.. ..+|..+.|+++|.+++...+ +.|.++|++.. .++
T Consensus 78 LWDv~tGk~l----a~~k~--------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 78 LWDVETGKQL----ATWKT--------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred EEEcCCCcEE----EEeec--------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 9999999865 45555 678999999999998886532 67999999832 345
Q ss_pred eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc
Q 014644 282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 361 (421)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (421)
+..+..+...+ +.+-|+|-+++|++|.+||.|.+||++++...+...+.|...++.+.++++
T Consensus 140 ~~kI~t~~ski---------------t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d--- 201 (327)
T KOG0643|consen 140 YLKIPTPDSKI---------------TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD--- 201 (327)
T ss_pred eEEecCCccce---------------eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC---
Confidence 55665555443 789999999999999999999999999997778888899999999999999
Q ss_pred cccccceeeeecccCc-ccCCCCCcc-ccccccccCeEEEEEccCCCeEEEec
Q 014644 362 RRSSLSNLTRGLYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 362 ~~~~~~~l~~g~~d~~-~iw~~~~~~-~~~~~~~~~v~~~~~spd~~~la~~~ 412 (421)
..++++++.|.. ++|+...+. ........+|++.+++|-...++.|+
T Consensus 202 ----~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 202 ----RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred ----cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence 349999999999 999554332 23334578999999999988888776
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=181.32 Aligned_cols=249 Identities=17% Similarity=0.208 Sum_probs=196.8
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
..|.++|+++.| +|....|++|+.|++|+++|+.....+
T Consensus 169 YDH~devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saK--------------------------------------- 207 (430)
T KOG0640|consen 169 YDHVDEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAK--------------------------------------- 207 (430)
T ss_pred hhccCcccceee--cchhheEEeccCCCeEEEEecccHHHH---------------------------------------
Confidence 479999999999 788999999999999999998764311
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+..+.+ ....+|+++.|+|.|.+|+.| +--++++||++ .-+++-... .-.+|++
T Consensus 208 ------------------rA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsan----Pd~qht~ 262 (430)
T KOG0640|consen 208 ------------------RAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSAN----PDDQHTG 262 (430)
T ss_pred ------------------HHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecC----ccccccc
Confidence 111222 445689999999999999999 88899999999 556554321 2367999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc-ccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
.|+++.+++.+ ++.++++.||.|++||=-+++.+ ..+.. | ....|.+..|..+|+|+++.+.
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH------------~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAH------------GGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHhhc------------CCceeeeEEEccCCeEEeecCC
Confidence 99999999999 99999999999999998777655 33332 1 1358999999999999998765
Q ss_pred -CeEEEEECCCCCcceeEEeeccCccc-ccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCceeEEe
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRP-KLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVE 344 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~ 344 (421)
..+++|.+.+ +.++..+.+...... ... +...|.....|++.-.+ .+.+.-||.++..+....-.
T Consensus 326 DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~r-----------tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 326 DSTVKLWEIST-GRMLKEYTGAGTTGRQKHR-----------TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred cceeeeeeecC-CceEEEEecCCcccchhhh-----------hhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 9999999997 999988877532110 000 34567766777666554 57789999999866667778
Q ss_pred cCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
+|.+.++.+..+|. .+.+.+++.|.. +.|
T Consensus 394 gHn~a~R~i~HSP~-------~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPV-------EPAFMTCSDDFRARFW 423 (430)
T ss_pred CCCCCceEEEeCCC-------CCceeeecccceeeee
Confidence 99999999999998 447899999988 999
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=176.73 Aligned_cols=234 Identities=13% Similarity=0.181 Sum_probs=186.7
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|..+|++++. ++.++|+||.|.+|+|||+....
T Consensus 41 aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~------------------------------------------ 74 (362)
T KOG0294|consen 41 AHAGSITALAV----SGPYVASGSSDETIHIYDMRKRK------------------------------------------ 74 (362)
T ss_pred ccccceeEEEe----cceeEeccCCCCcEEEEeccchh------------------------------------------
Confidence 68999999998 37899999999999999998743
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC--EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.+..+ -.|.+.|+++.|.+.-. .|++| +||.|.+|+.. .-.++..+ .+|.
T Consensus 75 ------------------qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~sl-------K~H~ 127 (362)
T KOG0294|consen 75 ------------------QLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSL-------KAHK 127 (362)
T ss_pred ------------------hhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeee-------cccc
Confidence 11122 47899999999988764 78888 99999999998 56666654 8999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
+.|+.++.+|.+ ++.++.+.|+.+++||+-.++.. ..... ....+.+.|+|.|.+++....
T Consensus 128 ~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 128 GQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred cccceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEec
Confidence 999999999999 99999999999999999887643 22222 234556999999998888777
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
..|-+|.+.+ ......+...... .++.|- ++..|++|.+|+.|.+||-+.. .....+.+|.
T Consensus 189 ~~i~i~q~d~-A~v~~~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~ 249 (362)
T KOG0294|consen 189 NKIDIYQLDN-ASVFREIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHE 249 (362)
T ss_pred cEEEEEeccc-HhHhhhhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecch
Confidence 7899999986 4444443332211 344443 5778999999999999998875 7788999999
Q ss_pred CCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
..|..+.+-....+. +|++.+.||. ++|
T Consensus 250 ~RVK~i~~~~~~~~~-----~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHE-----YLVTASSDGFIKVW 278 (362)
T ss_pred hheeeeEEEecCCce-----EEEEeccCceEEEE
Confidence 999999976553333 9999999999 999
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=202.89 Aligned_cols=208 Identities=21% Similarity=0.366 Sum_probs=165.0
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||.+.|.++.| ...++|+++|+|+|||||++...
T Consensus 366 ~GHt~DILDlSW---SKn~fLLSSSMDKTVRLWh~~~~------------------------------------------ 400 (712)
T KOG0283|consen 366 KGHTADILDLSW---SKNNFLLSSSMDKTVRLWHPGRK------------------------------------------ 400 (712)
T ss_pred hccchhheeccc---ccCCeeEeccccccEEeecCCCc------------------------------------------
Confidence 589999999999 34589999999999999998763
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.|++.| .|.+-|+|++|+| |.+++++| -|+.|+||++. ..+.+.- ..-.
T Consensus 401 ------------------~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~-d~~Vv~W--------~Dl~ 451 (712)
T KOG0283|consen 401 ------------------ECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS-DKKVVDW--------NDLR 451 (712)
T ss_pred ------------------ceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecC-cCeeEee--------hhhh
Confidence 667777 8999999999999 78899999 99999999998 4443322 3344
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEe
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR 265 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~ 265 (421)
.-|++++|.|+| +..+.|+.+|.+++|++...++. ..+..+..... -..|. .|+++.|.|.. +.|++.
T Consensus 452 ~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~----~~~~I~~~~~K----k~~~~-rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 452 DLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLV----SDFHIRLHNKK----KKQGK-RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred hhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEE----EeeeEeeccCc----cccCc-eeeeeEecCCCCCeEEEec
Confidence 789999999999 99999999999999999886543 22222100000 01123 79999999853 377777
Q ss_pred cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
.|..|||||.+. ..++..|++....... ....|+.||++|+++++|..|+||++..
T Consensus 522 nDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 522 NDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 789999999985 8888889887665422 3789999999999999999999999743
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.1e-25 Score=195.95 Aligned_cols=270 Identities=12% Similarity=0.099 Sum_probs=212.9
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
+|.+.|..++. .++..++++|.||++++|+-..++....
T Consensus 12 gH~~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~~~~l~~-------------------------------------- 50 (745)
T KOG0301|consen 12 GHKSDVRAVAV---TDGVCIISGSRDGTVKVWAKKGKQYLET-------------------------------------- 50 (745)
T ss_pred cCccchheeEe---cCCeEEeecCCCCceeeeeccCcccccc--------------------------------------
Confidence 46666777777 5567899999999999999755441111
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEE-EeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
..+ .+|.+-|.. +++-+ ++-.|++| .|.+|.+|... +...+. ++.+|.
T Consensus 51 --------------------~~~-~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-~~~P~~-------~LkgH~ 101 (745)
T KOG0301|consen 51 --------------------HAF-EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-QAEPLY-------TLKGHK 101 (745)
T ss_pred --------------------eec-ccCcceeeccceeccccCcceEeecccceEEEEecC-CCCchh-------hhhccc
Confidence 112 456666655 66664 44457777 99999999998 455554 458999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 266 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~ 266 (421)
..|.|+....++ . +++||.|.++++|....-. ..+.+ |...|.+++.-|++ .+++| .
T Consensus 102 snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~l~g-------------H~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 102 SNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YSLQG-------------HTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred cceeeeecCCcC-c-eEecccccceEEecchhhh------cccCC-------------cchheeeeeecCCC-cEEeccC
Confidence 999999988776 4 9999999999999865421 33444 58999999999988 55565 4
Q ss_pred CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644 267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 346 (421)
Q Consensus 267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 346 (421)
|.+|++|.- ++.++++.+|...+ +++++-+++. +++++.||.|++|++. +..+..+.+|
T Consensus 160 DKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~~-flScsNDg~Ir~w~~~--ge~l~~~~gh 218 (745)
T KOG0301|consen 160 DKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDSH-FLSCSNDGSIRLWDLD--GEVLLEMHGH 218 (745)
T ss_pred cceeeeccC---Cchhhhhccchhhe---------------eeeEEecCCC-eEeecCCceEEEEecc--Cceeeeeecc
Confidence 599999984 78899999999876 7889887754 6799999999999994 3788999999
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
++-+.++...++ ...+++.+.|++ +||..++....+.-....|+++.+-++|.+++.+|++.++||.
T Consensus 219 tn~vYsis~~~~-------~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 219 TNFVYSISMALS-------DGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred ceEEEEEEecCC-------CCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 999999996555 348999999999 9997776666665556799999999999999888999999995
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.5e-25 Score=189.21 Aligned_cols=289 Identities=15% Similarity=0.120 Sum_probs=221.1
Q ss_pred cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
..++.+.|.+-|.++.. +...+++.||+. |-|+|||+.... ...+|..+.....+..++++...++++.
T Consensus 411 rq~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg--------~k~PvsqLdcl~rdnyiRSckL~pdgrt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPG--------NKSPVSQLDCLNRDNYIRSCKLLPDGRT 479 (705)
T ss_pred HhhhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCC--------CCCccccccccCcccceeeeEecCCCce
Confidence 45567899999999999 566778888875 789999997643 2223333334445667888999999998
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
+..|.. ..++.|||+..... .....+ ..-.-...+|+.+||.+..+++ .||.|.|||+. +...++. +
T Consensus 480 LivGGe--astlsiWDLAapTp-rikael-tssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------f 547 (705)
T KOG0639|consen 480 LIVGGE--ASTLSIWDLAAPTP-RIKAEL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------F 547 (705)
T ss_pred EEeccc--cceeeeeeccCCCc-chhhhc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------c
Confidence 888877 56889999986511 111122 3333457889999999999999 99999999999 6667765 4
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
.+|++.+.|+..+++| ..|-+|+.|.+||.||++.++.. ...+- .+.|.++..+|++.+++
T Consensus 548 qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrql----qqhdF--------------~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL----QQHDF--------------SSQIFSLGYCPTGDWLA 608 (705)
T ss_pred cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh----hhhhh--------------hhhheecccCCCcccee
Confidence 9999999999999999 99999999999999999998643 11111 45799999999999999
Q ss_pred EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644 264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 342 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 342 (421)
.|-. +.+.+-... +.....+..|+..+ .++.|++-|+++++.+.|+.+-.|...-+
T Consensus 609 vGMens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG------ 665 (705)
T KOG0639|consen 609 VGMENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG------ 665 (705)
T ss_pred eecccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc------
Confidence 9976 778777764 44445566666654 79999999999999999999999987766
Q ss_pred EecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644 343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 420 (421)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~ 420 (421)
.-.|... -..+|+++..|.|.++|++|+.+ .-.+|.
T Consensus 666 ---------asiFqsk---------------------------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 666 ---------ASIFQSK---------------------------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ---------cceeecc---------------------------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 1122111 14678999999999999999966 455553
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=9.5e-25 Score=205.55 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=200.0
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
..|...|+|++| ++||.+||+||.|+.|.||+........... . .
T Consensus 66 ~~h~~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fg--s-----------------------------~-- 110 (942)
T KOG0973|consen 66 DDHDGSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFG--S-----------------------------T-- 110 (942)
T ss_pred ccccCceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccccc--c-----------------------------c--
Confidence 368999999999 8999999999999999999976411000000 0 0
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+ ..-+.+.. ++...+ .+|...|..++|+|++.+|+++ .|++|.+||..+ .+..+++ .+|..
T Consensus 111 ---g---~~~~vE~w---k~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl-------~~H~s 172 (942)
T KOG0973|consen 111 ---G---GAKNVESW---KVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVL-------RGHQS 172 (942)
T ss_pred ---c---ccccccee---eEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeee-------ecccc
Confidence 0 01111112 677777 8999999999999999999998 999999999984 4666654 89999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 266 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 266 (421)
.|..+.|.|-| ++|++-+.|++|++|++.+-... +.+..+ ... .........+.|||||++|++..
T Consensus 173 ~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~p-f~~------~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 173 LVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKP-FEE------SPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred cccceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccc-hhh------CCCcceeeecccCCCcCeecchhhc
Confidence 99999999999 99999999999999997764432 222221 000 00134678999999999999852
Q ss_pred --C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-----CC------------EEEEeeCCC
Q 014644 267 --Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFATGSYSN 326 (421)
Q Consensus 267 --~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~------------~l~~~s~dg 326 (421)
. ..+.|.+-.+ .+.-..+-+|..++ ..+.|+|. .+ .+|+|+.|+
T Consensus 241 n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 241 NGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 2 6788988765 66677888999876 67788771 12 678999999
Q ss_pred eEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 327 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 327 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
+|-||......++....+-....|..+.|+|+ |. .|...+.||. .+.
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd--G~-----~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD--GF-----SLFACSLDGTVALI 352 (942)
T ss_pred cEEEEecCCCCchhhhhhhhcCceeeeeEcCC--CC-----eEEEEecCCeEEEE
Confidence 99999987665555566666788999999999 44 8888999998 555
No 102
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.4e-23 Score=184.82 Aligned_cols=325 Identities=12% Similarity=0.073 Sum_probs=232.1
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
..+|.+++| +...+.||.+-.||.|.||++..+- +++...... ++.+.++++...++.+..|.
T Consensus 25 Ps~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~------------drsIE~L~W~e~~RLFS~g~-- 88 (691)
T KOG2048|consen 25 PSEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE------------DRSIESLAWAEGGRLFSSGL-- 88 (691)
T ss_pred ccceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeEEEecCC------------CCceeeEEEccCCeEEeecC--
Confidence 678999999 5778889999999999999998865 333333333 34455555544444443332
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+.+.-||+.+. +.+..+ ....+.|.+++.+|.++.++.| +||.+...+..+..-..+. .+...+++|
T Consensus 89 -sg~i~EwDl~~l---k~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRv 157 (691)
T KOG2048|consen 89 -SGSITEWDLHTL---KQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRV 157 (691)
T ss_pred -CceEEEEecccC---ceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceE
Confidence 456888999988 777777 7788999999999999999999 9998888887733323322 234456899
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
.+++|+|++ ..|+.|+.||.|++||...+....-....+.. -. +....-|.++.|-.++ .|++|+. |+
T Consensus 158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----l~-----k~~~~iVWSv~~Lrd~-tI~sgDS~G~ 226 (691)
T KOG2048|consen 158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR----LS-----KREPTIVWSVLFLRDS-TIASGDSAGT 226 (691)
T ss_pred EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccc----cc-----cCCceEEEEEEEeecC-cEEEecCCce
Confidence 999999999 89999999999999999987644200011111 00 1124467888888665 7788866 99
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC---ceeEEecC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAG 346 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~ 346 (421)
|.+||... +..++.+..|...+ .+++.++++.++++++.|+.|..+...+... ....-..|
T Consensus 227 V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h 290 (691)
T KOG2048|consen 227 VTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH 290 (691)
T ss_pred EEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence 99999986 99999998888854 8999999999999999999999998877644 23334567
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-c------------------------------------------cCCCC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-H------------------------------------------ENSSS 383 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~------------------------------------------iw~~~ 383 (421)
...+++++..+. .|.+|+.|.. . +|..+
T Consensus 291 ~hdvrs~av~~~---------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 291 AHDVRSMAVIEN---------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred cccceeeeeecc---------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc
Confidence 777778777665 4555555543 2 22111
Q ss_pred Cc----------ccc-ccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 384 GH----------HEL-SYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 384 ~~----------~~~-~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
.. +.. ...-...|.+.+.||||++||.+.-..++||.
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 00 000 01223467889999999999999977777764
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=200.66 Aligned_cols=230 Identities=16% Similarity=0.251 Sum_probs=191.7
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
..||.+.|.++++. ..+.+|++|+.|.++++||+.++
T Consensus 245 l~GH~g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg----------------------------------------- 281 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTG----------------------------------------- 281 (537)
T ss_pred ccCCCCCceeEEEe--cCCCEEEEEecCCcEEeEecCCC-----------------------------------------
Confidence 56999999999993 46889999999999999998875
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
+|..++ .+|.+.|.++... ...+++| .|.+|++|++. ++.++.++ .+|.
T Consensus 282 -------------------~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l~-------~~h~ 331 (537)
T KOG0274|consen 282 -------------------ECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNLL-------RGHT 331 (537)
T ss_pred -------------------cEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEEe-------cccc
Confidence 566667 7999999998774 5567777 99999999999 77888775 6699
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
++|.++..+ + .++++|+.|++|++||+.+++.. +.+.+ |...|.++.+.+. ..+++|+.
T Consensus 332 ~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 332 GPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred ccEEEEEec--C-CEEEEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeee
Confidence 999999988 5 79999999999999999987654 55555 4899999988865 78888865
Q ss_pred -CeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 268 -MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 268 -~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
+.|++||+++ . +++..+.+|...+ .++ ...+++|++++.|++|++||..++ ....++.+
T Consensus 391 D~~IkvWdl~~-~~~c~~tl~~h~~~v---------------~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~ 451 (537)
T KOG0274|consen 391 DTTIKVWDLRT-KRKCIHTLQGHTSLV---------------SSL--LLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEG 451 (537)
T ss_pred ccceEeecCCc-hhhhhhhhcCCcccc---------------ccc--ccccceeEeccccccEEEeecccC-ceeeeecc
Confidence 9999999997 6 8999999998764 233 336789999999999999999988 67777877
Q ss_pred -CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 346 -GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
|...+..+.+... .+++++.++. ++|
T Consensus 452 ~~~~~v~~l~~~~~---------~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 452 RHVGGVSALALGKE---------EILCSSDDGSVKLW 479 (537)
T ss_pred CCcccEEEeecCcc---------eEEEEecCCeeEEE
Confidence 6677777776522 6888899999 999
No 104
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-24 Score=172.40 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=183.9
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|.+-|+++.| +.-|+.+|||+.|++|+|||..+.. +.+
T Consensus 10 s~h~DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s---------------------------------~~W----- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDS---------------------------------GTW----- 49 (361)
T ss_pred cCCcceeeeeee--cccCceeeeccCCCcEEEEeccCCC---------------------------------Cce-----
Confidence 468899999999 7889999999999999999975532 111
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCC-----c-eeeeeeecCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS-----D-QCFNIVDMKP 180 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~-----~-~~~~~~~~~~ 180 (421)
.+-... +.|.+.|..+.|.+ -|+.+|++ .|+++.||.-... + +-++.
T Consensus 50 ------------------~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~----- 105 (361)
T KOG2445|consen 50 ------------------SCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR----- 105 (361)
T ss_pred ------------------EEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE-----
Confidence 222334 78999999999954 48999998 9999999975311 1 11111
Q ss_pred CCCCccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-
Q 014644 181 SNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND- 258 (421)
Q Consensus 181 ~~~~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~- 258 (421)
.++......|+.++|.|.. .-.+++++.||.||||+....-.. ..|....+-.........+..+..++.|+|.
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr 181 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR 181 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeecccc
Confidence 2446667889999999963 167899999999999987764221 2222201111111122344678889999984
Q ss_pred --CCEEEEecCC------eEEEEECCCCC---cceeEEeeccCcccccccccCCCcceeeeEEEEcCC----CCEEEEee
Q 014644 259 --GQHLLSRDYM------NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGS 323 (421)
Q Consensus 259 --~~~l~~~~~~------~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~l~~~s 323 (421)
..+||.|++. .++||.....+ ..+..+..|..++ ++++|.|+ -..||+++
T Consensus 182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEee
Confidence 5688888554 89999876433 2234455666655 89999996 34689999
Q ss_pred CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEcc
Q 014644 324 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP 403 (421)
Q Consensus 324 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~sp 403 (421)
.|| |+||.+......+ .-.+-. .|+.... + . -+.+...-+|...|+.+.|+-
T Consensus 247 kDg-v~I~~v~~~~s~i-~~ee~~--------~~~~~~~---l-----------~----v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAI-EEEEVL--------APDLMTD---L-----------P----VEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred cCc-EEEEEEeeccchh-hhhccc--------CCCCccc---c-----------c----eEEeeeccCCCCceEEEEEee
Confidence 999 9999998531110 000000 0000000 0 0 012233446777888888888
Q ss_pred CCCeEEEec-CCceEEEeC
Q 014644 404 TTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 404 d~~~la~~~-~~~~~i~~~ 421 (421)
.|.+|++.+ ++.+++|.+
T Consensus 299 tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 299 TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEeecCCCceeeehhh
Confidence 888888777 445777753
No 105
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.5e-23 Score=188.06 Aligned_cols=349 Identities=12% Similarity=0.100 Sum_probs=242.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
.||++-|+++.| +|.+..|+++|.|+++.+|...+.. ..........+ ..+++..+.++++...+.
T Consensus 264 ~GHeDWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg---------~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 264 MGHEDWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG---------SAGGFWGGLWSPNSNVII 332 (764)
T ss_pred cCcccceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccc---------cccceeeEEEcCCCCEEE
Confidence 499999999999 7888899999999999999977653 12222111111 123455555555553333
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
.-+. .+-.++|.......-...... .||.+.|.+++|.|.|++|++. .|.+-|++-.-..++...-+ . .-.-
T Consensus 333 ~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--a--RPQi 405 (764)
T KOG1063|consen 333 AHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--A--RPQI 405 (764)
T ss_pred Eecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--c--cccc
Confidence 3222 334678873332222333344 8999999999999999999998 99999998765222223222 1 1244
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccc------cc-----c--------------chh-hhc------cc
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL------CD-----H--------------SAR-ILR------DA 233 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~------~~-----~--------------~~~-~~~------~h 233 (421)
|...+.|++|-+.. ..+++|.....+|+|+....-. +. . ..+ .+. .+
T Consensus 406 HGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 406 HGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred ccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 77889999998864 7899999999999999864210 00 0 000 000 00
Q ss_pred ----cc------------cCC-----------CcccccccccceeEEEEcCCCCEEEEec-----C-CeEEEEECCCCCc
Q 014644 234 ----AE------------SHG-----------SKSFFTEIIASISDIKFANDGQHLLSRD-----Y-MNLKLWDIRMDST 280 (421)
Q Consensus 234 ----~~------------~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~-~~i~i~d~~~~~~ 280 (421)
.+ +|. ..+.+.+|...|.+++.+|+|+++|++. . ..|++|+..+ -.
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~ 563 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WL 563 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hh
Confidence 00 000 0122578899999999999999999862 1 5799999986 66
Q ss_pred ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce---eEEecCCCCccceeeec
Q 014644 281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQA 357 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~ 357 (421)
.++.+.+|.-.+ +.++|||||++|++.|.|.++.+|......... ..+..|+-.|....|+|
T Consensus 564 ~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 564 QVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred hhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence 666888888765 899999999999999999999999987553332 33778999999999999
Q ss_pred CCcccccccceeeeecccCc-ccCCCCCc----cc--cccccccCeEEEEEccCCC-----eEEEec-CCceEEEe
Q 014644 358 APRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTTN-----LIACAN-GNSLFFHY 420 (421)
Q Consensus 358 ~~~~~~~~~~~l~~g~~d~~-~iw~~~~~----~~--~~~~~~~~v~~~~~spd~~-----~la~~~-~~~~~i~~ 420 (421)
+ ..+++++++|.+ ++|...+. +. ....+..+|+.++|.|--. .+|+|- .+.|++|.
T Consensus 629 d-------e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 629 D-------EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred c-------cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 9 447999999999 99933222 11 4557889999999987632 455555 66799986
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.5e-25 Score=182.57 Aligned_cols=279 Identities=18% Similarity=0.158 Sum_probs=218.6
Q ss_pred cceeeccCCCCceeeeecccccccceeEEeecccce-----eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEE
Q 014644 91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-----ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 164 (421)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lw 164 (421)
..+.|..++|++.++.+|+. ++.+.+|+..++.. .+....+ .-+...|.|+.|+.|...||+| .||.|++|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSv--DGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSV--DGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred cchhheeeCCCCceEeeccc--cceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 35667888999999999998 77899999887621 1122233 4477899999999999999999 99999999
Q ss_pred eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccc
Q 014644 165 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244 (421)
Q Consensus 165 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 244 (421)
.+. .+++++.++ ..|+..|+|+.|+.|+ ..+++++.|.++++--+.+|+.. +.+.+|
T Consensus 291 ri~-tG~ClRrFd------rAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KEfrGH----------- 347 (508)
T KOG0275|consen 291 RIE-TGQCLRRFD------RAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KEFRGH----------- 347 (508)
T ss_pred EEe-cchHHHHhh------hhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HHhcCc-----------
Confidence 999 778877653 5799999999999999 89999999999999999998765 666664
Q ss_pred ccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEe
Q 014644 245 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG 322 (421)
Q Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~ 322 (421)
.+.|+...|.+||.++++++. |+|++|+.++ .+++.+++...... .|.++-.-| +...++++
T Consensus 348 --sSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 348 --SSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVC 411 (508)
T ss_pred --cccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEE
Confidence 899999999999999999865 9999999997 88888887654322 125665555 56788899
Q ss_pred eCCCeEEEEecCCCCCceeEEecCCCC---ccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCe
Q 014644 323 SYSNLLRIFSHGVGSAGGITVEAGKNE---NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKL 396 (421)
Q Consensus 323 s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v 396 (421)
...++|+|-+++ ++....+....-. .-..+.+|. +..+.+.+.|+. .-+ ..+.+.....-|+..|
T Consensus 412 Nrsntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpk-------GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 412 NRSNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPK-------GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred cCCCeEEEEecc--ceEEeeeccCCccCCceEEEEecCC-------CcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 999999999987 3455555433222 122233444 348888899998 666 5566666777889999
Q ss_pred EEEEEccCCCeEEEecCC-ceEEEe
Q 014644 397 LHLAWHPTTNLIACANGN-SLFFHY 420 (421)
Q Consensus 397 ~~~~~spd~~~la~~~~~-~~~i~~ 420 (421)
..++-||..+.||+=+.| -+.+|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 999999999999998855 477774
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=171.35 Aligned_cols=283 Identities=16% Similarity=0.219 Sum_probs=204.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
+.|.. -+|+.| ++-|.+||+|+.||.|.|||+.+..
T Consensus 21 ld~~~-a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------- 56 (405)
T KOG1273|consen 21 LDNPL-AECCQF--SRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------- 56 (405)
T ss_pred ccCCc-cceEEe--ccCcceeeeeccCCcEEEEEccccc-----------------------------------------
Confidence 34444 689999 7899999999999999999998843
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
..+++ .+|..+|.+++||+||+.|+++ .|..|.+||+.. +.+++.+. ...
T Consensus 57 -------------------iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir--------f~s 107 (405)
T KOG1273|consen 57 -------------------IARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR--------FDS 107 (405)
T ss_pred -------------------hhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE--------ccC
Confidence 12334 7899999999999999999999 999999999984 44555442 458
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
+|+.+.|+|...+.++..-.+..-.+-++..+.. ..+.. ...... +.......|.+.|++|++|+.
T Consensus 108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~--d~d~dl------n~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK--DDDGDL------NSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred ccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eeccC--CCcccc------ccccccccccCCCCEEEEecCc
Confidence 8999999998756666655565556666554221 11111 011100 122233468999999999987
Q ss_pred CeEEEEECCCCCcceeEEeecc-CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-----e-
Q 014644 268 MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-----G- 340 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-----~- 340 (421)
|.+.++|..+ .+++..++... .. +..+-++..|+.++..+.|..||.|+++.-... .
T Consensus 175 Gkllv~~a~t-~e~vas~rits~~~---------------IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 175 GKLLVYDAET-LECVASFRITSVQA---------------IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred ceEEEEecch-heeeeeeeechhee---------------eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 9999999987 77777776544 22 267889999999999999999999998732110 0
Q ss_pred --eEEe--cCCCCccceeeecCCcccccccceeeeecccCc--ccC--CCCCccccccccc-cCeEEEEEccCCCeEEEe
Q 014644 341 --ITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLS-SKLLHLAWHPTTNLIACA 411 (421)
Q Consensus 341 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~~~~~~~~~~~~~-~~v~~~~~spd~~~la~~ 411 (421)
..++ -.+..-+.+.|+.+ +.+++.|+...- +|| ..|.++..+.|.+ ....++.|+|-...+++-
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~d-------geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGD-------GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCC-------ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 1111 11233456677766 347877776655 899 5566666666776 567899999999999999
Q ss_pred cCCceEEEeC
Q 014644 412 NGNSLFFHYA 421 (421)
Q Consensus 412 ~~~~~~i~~~ 421 (421)
..|.++||..
T Consensus 312 ~sg~v~iw~~ 321 (405)
T KOG1273|consen 312 ASGVVYIWAV 321 (405)
T ss_pred cCCceEEEEe
Confidence 9999999963
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9e-25 Score=172.45 Aligned_cols=249 Identities=16% Similarity=0.139 Sum_probs=190.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
-+|++.|..+.. +--|.+|||+++|++|||+.++.... .
T Consensus 8 t~H~D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~---------s------------------------------ 46 (299)
T KOG1332|consen 8 TQHEDMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ---------S------------------------------ 46 (299)
T ss_pred hhhhhhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC---------c------------------------------
Confidence 367888888776 55689999999999999999877431 0
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
.++.++ .||.++|..++|.. -|.+||++ .||.|.||.-. +++--+. .....|
T Consensus 47 ------------------~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-~g~w~k~-----~e~~~h 101 (299)
T KOG1332|consen 47 ------------------KLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-NGRWTKA-----YEHAAH 101 (299)
T ss_pred ------------------eeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-CCchhhh-----hhhhhh
Confidence 344456 89999999999965 79999999 99999999987 4432211 234679
Q ss_pred CCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---C---
Q 014644 187 TEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---G--- 259 (421)
Q Consensus 187 ~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~--- 259 (421)
...|.+++|.|.+ .-.|++++.||.|.+.+.+..... ...++. ..|.-.|++++|.|. |
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-~t~ki~-------------~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-TTSKIV-------------FAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-cchhhh-------------hccccccceeeecCcCCCcccc
Confidence 9999999999975 257889999999999998875211 111333 345788999999985 4
Q ss_pred --------CEEEEec-CCeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCC----CCEEEEeeCC
Q 014644 260 --------QHLLSRD-YMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYS 325 (421)
Q Consensus 260 --------~~l~~~~-~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~l~~~s~d 325 (421)
+.|++|+ |..|+||+..... ...+++.+|...+ +.++|.|. -.+|+++|+|
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV---------------RDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV---------------RDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh---------------hhhhhccccCCCceeeEEecCC
Confidence 5688875 5999999997521 3344588899876 89999995 3579999999
Q ss_pred CeEEEEecCCCC--CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 326 NLLRIFSHGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 326 g~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
|++.||-.+... .....+......+..+.|++. ++.|+.++.|.. .+|
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s-------Gn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS-------GNILAVSGGDNKVTLW 283 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEecc-------ccEEEEecCCcEEEEE
Confidence 999999877432 224455666788999999988 448988888888 999
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.9e-25 Score=198.60 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=178.7
Q ss_pred ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644 140 NINSISNNS-DCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
.+..+.|+. +.++||++ ..|.|.+||+... .+++. .+..|...+.++.|++..+++|++|+.||+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCW 161 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------HhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence 455677764 57899999 9999999999842 22222 3478999999999999999999999999999999
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP 293 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~ 293 (421)
|++..... ..+.. ....|..++|+|. +.+++++.+ |.+++||++...++...+.+|.+++
T Consensus 162 DlR~~~S~----~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV- 223 (839)
T KOG0269|consen 162 DLRSKKSK----STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV- 223 (839)
T ss_pred eeeccccc----ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce-
Confidence 99986533 23322 2578999999994 667788888 9999999998888999999999987
Q ss_pred ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644 294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 373 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 373 (421)
.++.|+|++.+||+|+.|+.|+|||+.+........-.-..++..+.|.|.++. .||+.+
T Consensus 224 --------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~------hLAtcs 283 (839)
T KOG0269|consen 224 --------------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY------HLATCS 283 (839)
T ss_pred --------------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc------hhhhhh
Confidence 899999999999999999999999998764433333445688999999999653 466654
Q ss_pred --ccCc-ccCCCCC---ccccccccccCeEEEEEcc-CCCeEEEecCCc
Q 014644 374 --YRQA-HENSSSG---HHELSYNLSSKLLHLAWHP-TTNLIACANGNS 415 (421)
Q Consensus 374 --~d~~-~iw~~~~---~~~~~~~~~~~v~~~~~sp-d~~~la~~~~~~ 415 (421)
.|.. ++|+... +......|...++.++|-. |...|.+++.|+
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 3334 9994432 2234557888999999965 444566666554
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.5e-24 Score=184.35 Aligned_cols=215 Identities=16% Similarity=0.244 Sum_probs=159.5
Q ss_pred ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
+-.+|+..-..+.|. ......|++++.|++|.+||+...... ..+.
T Consensus 172 ~L~gH~~eg~glsWn-~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~------------------------- 217 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWN-RQQEGTLLSGSDDHTICLWDINAESKE--------DKVV------------------------- 217 (422)
T ss_pred EEEeecccccccccc-cccceeEeeccCCCcEEEEeccccccC--------Cccc-------------------------
Confidence 445777777889994 233668999999999999999874411 0000
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCC
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD 184 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~ 184 (421)
.+...+ .+|...|..++|++-.. ++++. +|+.+.|||++.. .+.. ....
T Consensus 218 --------------------~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~~ 269 (422)
T KOG0264|consen 218 --------------------DPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSVK 269 (422)
T ss_pred --------------------cceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------cccc
Confidence 334455 89999999999999544 55555 9999999999952 1222 2347
Q ss_pred ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-E
Q 014644 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-L 263 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~ 263 (421)
+|.+.|.|++|+|-+..+||+||.|++|++||+|+... ....+.. |...|..+.|+|+...+ |
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~-------------H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEG-------------HEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccC-------------CCcceEEEEeCCCCCceeE
Confidence 89999999999998778999999999999999998543 2344444 58999999999986654 4
Q ss_pred Ee-cCCeEEEEECCCCCcc-------------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeE
Q 014644 264 SR-DYMNLKLWDIRMDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLL 328 (421)
Q Consensus 264 ~~-~~~~i~i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i 328 (421)
++ .|+.+.+||+..-++. +..-.||...+ ..+.|+|+.. .|++.++|+.+
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence 44 4599999999653332 23334455443 7899999755 47788999999
Q ss_pred EEEecCC
Q 014644 329 RIFSHGV 335 (421)
Q Consensus 329 ~iwd~~~ 335 (421)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999874
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.5e-24 Score=188.49 Aligned_cols=308 Identities=13% Similarity=0.149 Sum_probs=219.2
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccc-cceeeccCCCCceeeee
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE-KNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (421)
-.+|++.|.+|.. ++.|.+|++|+.||+||||.+.++. ++......+.|.|++|++.. ..+++++..
T Consensus 396 yrGHtg~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-------- 463 (733)
T KOG0650|consen 396 YRGHTGLVRSISV--DPSGEWLASGSDDGTVRIWEIATGR--CVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-------- 463 (733)
T ss_pred EeccCCeEEEEEe--cCCcceeeecCCCCcEEEEEeecce--EEEEEeecceeEEEEecCCCCceeEEEEec--------
Confidence 3589999999999 7899999999999999999999986 33333455566666666532 233333331
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----cCCcEEEEeCCCCcee---eeeeecC
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQC---FNIVDMK 179 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~d~~i~lwd~~~~~~~---~~~~~~~ 179 (421)
.++-.+...-.. .+.--+....|+++ .++.+..|.-....+. +++.
T Consensus 464 --------------------~~~~ivnp~~G~---~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~--- 517 (733)
T KOG0650|consen 464 --------------------ECVLIVNPIFGD---RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV--- 517 (733)
T ss_pred --------------------CceEEeCccccc---hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE---
Confidence 111111000000 01111122333332 3667778865421111 1221
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcC---CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 256 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s 256 (421)
-.|...|..+.|+..| .+|++...+ ..|.|.++...... .-| ....+.+.++.|+
T Consensus 518 ----I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF-------------~kskG~vq~v~FH 575 (733)
T KOG0650|consen 518 ----IKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPF-------------RKSKGLVQRVKFH 575 (733)
T ss_pred ----EecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cch-------------hhcCCceeEEEec
Confidence 3477899999999999 999887654 57888888765432 112 2225689999999
Q ss_pred CCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 257 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 257 ~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
|...+|+.++...|+|||+.. +..++.+.....++ .+++.+|.|.-|+.|+.|+.+..+|+.-.
T Consensus 576 Ps~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 576 PSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred CCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 999999999989999999975 77776665544443 68999999999999999999999999988
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--------CC---ccccccccccC----eEEEE
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--------SG---HHELSYNLSSK----LLHLA 400 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--------~~---~~~~~~~~~~~----v~~~~ 400 (421)
....+++..|...+++++|++. +.+|++|+.||. .++.. +. .+..+.+|... |.++.
T Consensus 640 skPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 8889999999999999999988 669999999999 77611 11 22345577655 99999
Q ss_pred EccCCCeEEEecC-CceEEE
Q 014644 401 WHPTTNLIACANG-NSLFFH 419 (421)
Q Consensus 401 ~spd~~~la~~~~-~~~~i~ 419 (421)
|||...+|.+++. +.|++|
T Consensus 713 wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCCCceEEecCCCceEEee
Confidence 9999999998885 479888
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-22 Score=185.36 Aligned_cols=333 Identities=13% Similarity=0.141 Sum_probs=244.7
Q ss_pred EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
|+++.- |+.--+.++.|+.+|.++||++.+++. ..+.. +. ..|.++...|..-.++-|.. ++
T Consensus 162 Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~--~~------------s~IT~ieqsPaLDVVaiG~~--~G 224 (910)
T KOG1539|consen 162 ITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE--FF------------SRITAIEQSPALDVVAIGLE--NG 224 (910)
T ss_pred eeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecc--cc------------cceeEeccCCcceEEEEecc--Cc
Confidence 777754 222356799999999999999999883 33322 11 35666666677666777665 67
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 192 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (421)
.+.+.++... +.+..+ +...+.|++++|..||+.+++ | ..|.+-+||++ ..++..++ ...|.+.|..
T Consensus 225 ~ViifNlK~d---kil~sF-k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe-~kkl~~v~------~nah~~sv~~ 293 (910)
T KOG1539|consen 225 TVIIFNLKFD---KILMSF-KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE-KKKLINVT------RNAHYGSVTG 293 (910)
T ss_pred eEEEEEcccC---cEEEEE-EccccceeEEEeccCCCeeEEeccCCceEEEEEcC-CCeeeeee------eccccCCccc
Confidence 8889998887 888888 444699999999999986665 5 67999999999 55554443 2578889999
Q ss_pred EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC---------------------------------
Q 014644 193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS--------------------------------- 239 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~--------------------------------- 239 (421)
..|.|.. ..+++++.|..+++|=..++......++.-.+|..+|..
T Consensus 294 ~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 9999998 899999999999988554221100000000000000000
Q ss_pred ---------------c-----------------------------------------------------cccccccccee
Q 014644 240 ---------------K-----------------------------------------------------SFFTEIIASIS 251 (421)
Q Consensus 240 ---------------~-----------------------------------------------------~~~~~~~~~v~ 251 (421)
. ..++.-...+.
T Consensus 373 l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~ 452 (910)
T KOG1539|consen 373 LGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINAT 452 (910)
T ss_pred hcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceE
Confidence 0 00111235688
Q ss_pred EEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE---eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644 252 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 327 (421)
Q Consensus 252 ~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~ 327 (421)
+++.++.|++.+.|.. |.|.+|++.+ +-....+ ..|...+ ++++...-++.+++++.+|.
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V---------------~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEV---------------TGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCce---------------eEEEecCCCceEEEccCcce
Confidence 9999999999999976 9999999986 7777777 3566654 78898888899999999999
Q ss_pred EEEEecCCCC----------------------------------------CceeEEecCCCCccceeeecCCcccccccc
Q 014644 328 LRIFSHGVGS----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLS 367 (421)
Q Consensus 328 i~iwd~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
+.+||..... ...+.+.+|.+.++.+.|+|+ |+
T Consensus 517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D--gr----- 589 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD--GR----- 589 (910)
T ss_pred EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC--Cc-----
Confidence 9999987641 234455689999999999999 55
Q ss_pred eeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644 368 NLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 420 (421)
Q Consensus 368 ~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~ 420 (421)
.|++++.|+. ++|+ ....+........+.+++.|+|+|.+||++. .++||+|.
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999 9994 3345556666788899999999999999998 36899995
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.9e-25 Score=181.50 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=194.2
Q ss_pred eeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644 131 KVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 208 (421)
Q Consensus 131 ~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 208 (421)
..+ .||.+.|.+++=+|.. ..+++| .||.|+|||+. ...+...+ ..|.+.|..+++.. ..+++++.
T Consensus 60 ~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f-------~AH~G~V~Gi~v~~---~~~~tvgd 127 (433)
T KOG0268|consen 60 GSL-DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTF-------KAHEGLVRGICVTQ---TSFFTVGD 127 (433)
T ss_pred hhc-cccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhhee-------ecccCceeeEEecc---cceEEecC
Confidence 344 8999999999999976 788898 99999999998 55666544 88999999999987 45889999
Q ss_pred CCeEEEEECCcccc-----------------------cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-E
Q 014644 209 RGFVRLVDMRQSAL-----------------------CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S 264 (421)
Q Consensus 209 d~~v~iwd~~~~~~-----------------------~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~ 264 (421)
|.+|+.|-+...-. +.+.+.+|+. ....+.+.+.-....+.++.|+|....|+ +
T Consensus 128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~--~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 128 DKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDE--QRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred CcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccc--ccCCccceeecCCCceeEEecCCCcchheee
Confidence 99999998543210 1111223322 11112223444456788999999776554 4
Q ss_pred e-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644 265 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 265 ~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 343 (421)
+ +|+.|.|||++. ..+++.....-.. ..++|+|.+--+++|++|..++.+|++.......+.
T Consensus 206 ~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred eccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccceehhhhhhcccchhh
Confidence 4 569999999997 7777766544332 589999988778999999999999999988889999
Q ss_pred ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccc---cCeEEEEEccCCCeEEEec-CCceEE
Q 014644 344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTTNLIACAN-GNSLFF 418 (421)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~---~~v~~~~~spd~~~la~~~-~~~~~i 418 (421)
.+|.+.|..+.|+|. |. -+++|+.|.. +|+...+.-..-+-|+ ..|.++.||-|.+++++|| ++++++
T Consensus 269 ~dhvsAV~dVdfspt--G~-----EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPT--GQ-----EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred cccceeEEEeccCCC--cc-----hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 999999999999999 44 8999999999 9995544333333333 4689999999999999999 567999
Q ss_pred EeC
Q 014644 419 HYA 421 (421)
Q Consensus 419 ~~~ 421 (421)
|.+
T Consensus 342 Wka 344 (433)
T KOG0268|consen 342 WKA 344 (433)
T ss_pred eec
Confidence 964
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=176.84 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=189.9
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||.-+|+.+.| +++...+++++.|..|+||......
T Consensus 258 ~Gh~kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s----------------------------------------- 294 (506)
T KOG0289|consen 258 KGHTKKITSVKF--HKDLDTVITASADEIIRVWSVPLSS----------------------------------------- 294 (506)
T ss_pred cCcceEEEEEEe--ccchhheeecCCcceEEeecccccc-----------------------------------------
Confidence 389999999999 7889999999999999999976533
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+.... ..|.++|+.+..+|.|+||+++ .|++....|++.+.......+ +...-
T Consensus 295 -------------------~~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------~~s~v 348 (506)
T KOG0289|consen 295 -------------------EPTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------ETSDV 348 (506)
T ss_pred -------------------Ccccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------ccccc
Confidence 11112 6899999999999999999999 999999999994444333221 11224
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.+++.+|+||| .+|.+|..|+.|+|||+.++... ..| ++|.++|..++|+.+|-+|+++.+
T Consensus 349 ~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~F-------------pght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 349 EYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AKF-------------PGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred eeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----ccC-------------CCCCCceeEEEeccCceEEEEEecC
Confidence 58899999999 99999999999999999986532 334 446999999999999999999876
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-CceeEEecC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAG 346 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~ 346 (421)
+.|++||+|. -+.++++...+.. ++.+++|.+.|++|+.++.|=.|++++-.+.+ .+...+.-|
T Consensus 411 ~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 411 GSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred CeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 8899999996 6667777655532 23689999999999999888788887744432 345667778
Q ss_pred CCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.+....+.|... . .++++++.|.. +++
T Consensus 476 sg~st~v~Fg~~--a-----q~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 476 SGLSTGVRFGEH--A-----QYLASTSMDAILRLY 503 (506)
T ss_pred ccccceeeeccc--c-----eEEeeccchhheEEe
Confidence 888888888766 2 37888888876 543
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.9e-24 Score=175.12 Aligned_cols=260 Identities=16% Similarity=0.169 Sum_probs=208.3
Q ss_pred eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644 127 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 205 (421)
Q Consensus 127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 205 (421)
.+.++.+ .||.+.|..++.......+.++ .|.+.+||.++ .+.++..+ .+|.+.|.++.|++.+ .++++
T Consensus 138 ~~lvre~-~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-sg~CL~~Y-------~GH~GSVNsikfh~s~-~L~lT 207 (481)
T KOG0300|consen 138 FRLVREL-EGHKDGIWHVAADSTQPICGTASADHTARIWSLE-SGACLATY-------TGHTGSVNSIKFHNSG-LLLLT 207 (481)
T ss_pred Eeehhhh-cccccceeeehhhcCCcceeecccccceeEEeec-cccceeee-------cccccceeeEEecccc-ceEEE
Confidence 3667778 8999999999988777788888 99999999999 66666544 8999999999999999 99999
Q ss_pred EEcCCeEEEEEC------Cccccc-cc----chhhhcccccc------------CCCcccccccccceeEEEEcCCCCEE
Q 014644 206 SSSRGFVRLVDM------RQSALC-DH----SARILRDAAES------------HGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 206 ~~~d~~v~iwd~------~~~~~~-~~----~~~~~~~h~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
++.|++-.||.. ...... +. ...--+.|... ..+...+++|...|.+..|-..|+.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 999999999972 221000 00 00000010000 00112368899999999999999999
Q ss_pred EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
++++. .+..+||+++ ++++..+.+|.... +.++-+|..+++++.+.|.+.++||++..-....
T Consensus 288 vTaSWDRTAnlwDVEt-ge~v~~LtGHd~EL---------------tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~ 351 (481)
T KOG0300|consen 288 VTASWDRTANLWDVET-GEVVNILTGHDSEL---------------THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA 351 (481)
T ss_pred eeeeccccceeeeecc-CceeccccCcchhc---------------cccccCCcceEEEEeccCceeEeccchhhcceee
Confidence 99986 9999999998 99999999998864 7889999999999999999999999997656688
Q ss_pred EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEecCCc-eE
Q 014644 342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LF 417 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~ 417 (421)
+++||.+.|.+..|..+. .+++|++|.+ ++|+. .......+....+++.++.+..+++||.--+++ ++
T Consensus 352 VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred eecccccceeEEEEecCC--------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 999999999999998772 5899999999 99933 333334455678899999999999999998776 88
Q ss_pred EEe
Q 014644 418 FHY 420 (421)
Q Consensus 418 i~~ 420 (421)
+|+
T Consensus 424 lfD 426 (481)
T KOG0300|consen 424 LFD 426 (481)
T ss_pred EEe
Confidence 886
No 116
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1e-23 Score=173.02 Aligned_cols=294 Identities=14% Similarity=0.160 Sum_probs=203.2
Q ss_pred EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee------------EEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV------------KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
...++| +|||..|++-+.|..+++|++...-. .........+.|.+-+|-+.- -+..|+..
T Consensus 52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M-----~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM-----KSDQPSTN 124 (406)
T ss_pred hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecc-----ccCCCccc
Confidence 457899 79999999999999999999754221 011111112222222211100 00111222
Q ss_pred eeeecccccccceeEEeecccceeeeeeeec-CCCCcc---eEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecC
Q 014644 104 HGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFN---INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMK 179 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~---v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~ 179 (421)
+.+..+- ..-|.+||.-++ +....+. -.|.++ ..+|+|+|||.+|++|..++|+++|+...+.........
T Consensus 125 l~a~ssr--~~PIh~wdaftG---~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 125 LFAVSSR--DQPIHLWDAFTG---KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred eeeeccc--cCceeeeecccc---ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 2222111 337899999887 4444440 134444 468999999999999999999999995455433322111
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
...-.+..+.|.+++|+|..+..++.++....+-||.-..++.+ .++.+ |.+.|+-+.|.++|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llgg-------------h~gGvThL~~~edG 262 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLGG-------------HGGGVTHLQWCEDG 262 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeecc-------------cCCCeeeEEeccCc
Confidence 11113346788999999988679999999999888877665543 44444 48999999999999
Q ss_pred CEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644 260 QHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 337 (421)
Q Consensus 260 ~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~ 337 (421)
+.|.+|.. ..|..||++..+.++..+..|.... |..| -+...|++++|++|+.||.|++||++...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99999854 8899999998788888887776522 1122 35667899999999999999999999866
Q ss_pred CceeEEecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644 338 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 377 (421)
.....+..+...++.+.+.|. ...+|+.+....
T Consensus 331 n~~sv~~~~sd~vNgvslnP~-------mpilatssGqr~ 363 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPI-------MPILATSSGQRI 363 (406)
T ss_pred CcccccccccccccceecCcc-------cceeeeccCcee
Confidence 788999999999999999998 346777765544
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-22 Score=156.22 Aligned_cols=262 Identities=19% Similarity=0.257 Sum_probs=186.2
Q ss_pred CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE----EeeecCCCCCcccccccccccceeeccC
Q 014644 23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK----KIKEMDHFPFVSSENTLLAEKNFMNEHN 98 (421)
Q Consensus 23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 98 (421)
...+-+...|.+.|.|.+| +|.|+++++|+.|++|++..++..... .+.-.-|.+.|.+++|....
T Consensus 79 ~v~~kr~khhkgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~-------- 148 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP-------- 148 (350)
T ss_pred eEEeeeccccCccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC--------
Confidence 4556677789999999999 799999999999999999876653311 11111123333333332211
Q ss_pred CCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644 99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 177 (421)
Q Consensus 99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~ 177 (421)
...++.++++.. .+..+.+-|...+ +..+.+ .+|++.|.++- +-++-.+++| .|.+|+.||++ -..++++++
T Consensus 149 ~s~~~il~s~ga-gdc~iy~tdc~~g---~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlr-v~~~v~~l~ 221 (350)
T KOG0641|consen 149 ESGGAILASAGA-GDCKIYITDCGRG---QGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLR-VNSCVNTLD 221 (350)
T ss_pred CcCceEEEecCC-CcceEEEeecCCC---Ccceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeee-ccceeeecc
Confidence 112333443332 1235566676666 778888 89999998873 3358899999 99999999998 556776653
Q ss_pred cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644 178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 257 (421)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 257 (421)
..-..-.-....|.+++..|.| ++|++|-.|....+||++.++.+ +.+..| ...|.++.|+|
T Consensus 222 ~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~ph-------------sadir~vrfsp 283 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHPH-------------SADIRCVRFSP 283 (350)
T ss_pred CcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCCC-------------ccceeEEEeCC
Confidence 2110001123679999999999 99999999999999999998765 555554 78999999999
Q ss_pred CCCEEEEecC-CeEEEEECCCC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644 258 DGQHLLSRDY-MNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 258 ~~~~l~~~~~-~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~ 333 (421)
...|+++++. ..|++-|+.-+ ..++.....|.... ..+.|+|..--+++.+.|.++.+|-+
T Consensus 284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEecccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEecc
Confidence 9999999987 99999999631 11223333444432 57899999888899999999999976
Q ss_pred C
Q 014644 334 G 334 (421)
Q Consensus 334 ~ 334 (421)
.
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 4
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.7e-24 Score=193.09 Aligned_cols=239 Identities=16% Similarity=0.227 Sum_probs=185.5
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.+..|+|. ..+.++|||++..|.|.+||+.... .
T Consensus 89 S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~----r----------------------------------------- 122 (839)
T KOG0269|consen 89 SAADVKWG-QLYSNLIATCSTNGVISVWDLNKSI----R----------------------------------------- 122 (839)
T ss_pred ehhhcccc-cchhhhheeecCCCcEEEEecCccc----c-----------------------------------------
Confidence 46788895 5668899999999999999987621 0
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 192 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (421)
.+.+..| ..|+..++++.|++. ..+|++| .||+|++||++. .....+ +.+....|+.
T Consensus 123 ------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t-------~~~nSESiRD 181 (839)
T KOG0269|consen 123 ------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKST-------FRSNSESIRD 181 (839)
T ss_pred ------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeec-cccccc-------ccccchhhhc
Confidence 0333445 899999999999985 5577788 999999999993 443433 3567788999
Q ss_pred EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644 193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 271 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~ 271 (421)
+.|+|..+..++++...|.+++||+|....+ ...+.. |.++|.++.|+|++.+||+|+. +.|+
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k~~A-------------H~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKKLTA-------------HNGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhH---HHHhhc-------------ccCceEEEeecCCCceeeecCCCccEE
Confidence 9999987789999999999999999987544 344444 5999999999999999999975 9999
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE-EEEee--CCCeEEEEecCCCCCceeEEecCCC
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
|||+.. .+.......+... .+.++.|-|..++ |++++ .|-.|+|||++.......++..|++
T Consensus 246 iWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 246 IWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred EEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 999974 4333333222221 2378999997655 66665 4789999999987777899999999
Q ss_pred CccceeeecCCcccccccceeeeecccCc
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 377 (421)
.+..++|.... ...|.++++|+.
T Consensus 311 ~vt~i~W~~~d------~~~l~s~sKD~t 333 (839)
T KOG0269|consen 311 SVTGIAWDSGD------RINLWSCSKDGT 333 (839)
T ss_pred cccceeccCCC------ceeeEeecCccH
Confidence 99999997631 237888999987
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.7e-23 Score=175.43 Aligned_cols=280 Identities=16% Similarity=0.241 Sum_probs=206.6
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
.+.|++|.| +|...+|++++.|++++||.++...-..++.
T Consensus 213 ~~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N~~lqS-------------------------------------- 252 (514)
T KOG2055|consen 213 HGGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-------------------------------------- 252 (514)
T ss_pred cCCceEEEe--cCCCceEEEecCCCcEEEEEecCccChhhee--------------------------------------
Confidence 468999999 8999999999999999999998643111111
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC-CC
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV 189 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~ 189 (421)
+ .-...+|.++.|.|+|+ .++++ ....++.||+. ..+..++- .+.++. ..
T Consensus 253 --------------------~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~-----~~~g~e~~~ 305 (514)
T KOG2055|consen 253 --------------------I-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLK-----PPYGVEEKS 305 (514)
T ss_pred --------------------e-eeccCccceeeecCCCceEEEecccceEEEEeecc-cccccccc-----CCCCcccch
Confidence 1 12345789999999999 77777 88899999998 34333221 223333 35
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CC
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 268 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~ 268 (421)
+.....+|++ ++|+..+..|.|.+.-..++..+ ..+.. .+.|..++|+.|++.|++.+ +|
T Consensus 306 ~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 306 MERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred hheeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCc
Confidence 6778889999 99999999999999998887654 45554 67899999999999887664 49
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-----CCceeEE
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITV 343 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~ 343 (421)
.|.+||++. ..++.++......-. +++|.++++.|+|+||..|.|-|||.++. .+.+..+
T Consensus 367 eV~v~nl~~-~~~~~rf~D~G~v~g--------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 367 EVYVWNLRQ-NSCLHRFVDDGSVHG--------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred eEEEEecCC-cceEEEEeecCccce--------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 999999997 788888765443311 57899999999999999999999996642 2445666
Q ss_pred ecCCCCccceeeecCCcccccccceeeeecccCc---ccCCCCC-----ccccccccccCeEEEEEccCCCeEEEec-CC
Q 014644 344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENSSSG-----HHELSYNLSSKLLHLAWHPTTNLIACAN-GN 414 (421)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~---~iw~~~~-----~~~~~~~~~~~v~~~~~spd~~~la~~~-~~ 414 (421)
..-...|..+.|+++ . ..||.++.-.. ++-.... .....-.--..|++++|||.+-+||+|. .+
T Consensus 432 dNLtt~Itsl~Fn~d--~-----qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHD--A-----QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred hhhheeeeeeeeCcc--h-----hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 666778899999998 3 36666655443 3331110 0011112235789999999999999999 56
Q ss_pred ceEEEe
Q 014644 415 SLFFHY 420 (421)
Q Consensus 415 ~~~i~~ 420 (421)
.+.+|.
T Consensus 505 rv~l~k 510 (514)
T KOG2055|consen 505 RVHLFK 510 (514)
T ss_pred ceeeEe
Confidence 788885
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4e-23 Score=167.54 Aligned_cols=308 Identities=14% Similarity=0.189 Sum_probs=203.4
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
-|.+.|+++..- ...|+++++|+.||.|.+||++...-..... +.+-
T Consensus 41 ~HgGsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~------------------li~k-------------- 87 (397)
T KOG4283|consen 41 PHGGSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASG------------------LIAK-------------- 87 (397)
T ss_pred cCCCccceeeec-cccceEEeecCCCccEEEEEeccccchhhcc------------------ceeh--------------
Confidence 588999999993 2459999999999999999998643111100 0000
Q ss_pred ccccceeEEeecccceeee--eeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 111 TENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
..| .+.-..+|...|.++.|-| |.-.+.++ .|.++++||.+ .-+..-.+ + .
T Consensus 88 ----------------~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-TlQ~a~~F-----~---m 142 (397)
T KOG4283|consen 88 ----------------HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-TLQEAVDF-----K---M 142 (397)
T ss_pred ----------------eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecc-cceeeEEe-----e---c
Confidence 011 1111268999999999999 44455566 99999999999 44444443 1 3
Q ss_pred CCCeeEEEEecCCC--CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-
Q 014644 187 TEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL- 263 (421)
Q Consensus 187 ~~~v~~~~~~p~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 263 (421)
.+.|++-+++|-.. .++++|..|-.|++.|+.+|... +.+.+ |.+.|.++.|+|..++++
T Consensus 143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~LsG-------------Hr~~vlaV~Wsp~~e~vLa 205 (397)
T KOG4283|consen 143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTLSG-------------HRDGVLAVEWSPSSEWVLA 205 (397)
T ss_pred CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eeecc-------------ccCceEEEEeccCceeEEE
Confidence 36688888888531 47788889999999999998754 56555 489999999999988876
Q ss_pred EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcce-eeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF-DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
+|+. |.|++||++....++..+..|....+.+ +..+.+.+ .+.+++|+.++.++++.+.|..+++|+...+.....
T Consensus 206 tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~--~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 206 TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI--LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred ecCCCceEEEEEeecccceeEEeecccCccCcc--ccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence 4554 9999999997667777787776422211 11122222 247999999999999999999999999998854333
Q ss_pred EEe--cCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644 342 TVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNS 415 (421)
Q Consensus 342 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~ 415 (421)
.+- .|... ...++... .+. ...+.---.++. .+. -.++.+.....|-..|.+.++-|+-+.+.+|. +++
T Consensus 284 ~~g~~~~n~~-~~~~~~~~-~~~---s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 284 EFGPIIHNQT-TSFAVHIQ-SMD---SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGN 358 (397)
T ss_pred cccccccccc-ccceEEEe-ecc---cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCc
Confidence 221 11110 11111100 000 001111111122 333 23445555567778899999999988888888 677
Q ss_pred eEEEe
Q 014644 416 LFFHY 420 (421)
Q Consensus 416 ~~i~~ 420 (421)
++.|.
T Consensus 359 i~~w~ 363 (397)
T KOG4283|consen 359 IYMWS 363 (397)
T ss_pred ccccc
Confidence 88884
No 121
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=180.51 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=184.8
Q ss_pred CcceEEEeecCCCCE-EEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCET-FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~-l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
.+.|.+++|+|...+ +|+...-.+.||+.. .....+.+ ......+++++|..|| .++++|...|.|++||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~-------srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD 96 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTF-------SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFD 96 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhH-------HhhccceeEEEeecCC-eEEEccCCcCcEEEec
Confidence 467999999996543 444566789999987 44444322 4566889999999999 9999999999999999
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK 294 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 294 (421)
+.+... ++.+.. |..++..+.|+|++. .+++|+| +.+++||+.+ ......+.+|+..+
T Consensus 97 ~k~r~i----LR~~~a-------------h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYV-- 156 (487)
T KOG0310|consen 97 MKSRVI----LRQLYA-------------HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYV-- 156 (487)
T ss_pred cccHHH----HHHHhh-------------ccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEEEEecCCccee--
Confidence 665322 255555 489999999999655 5566777 9999999986 55555788888866
Q ss_pred cccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644 295 LCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 373 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 373 (421)
.+.+|+|. +.++++|++||.|++||++... ....--.|..+|..+.+-|+ +..+++++
T Consensus 157 -------------R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lps-------gs~iasAg 215 (487)
T KOG0310|consen 157 -------------RCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPS-------GSLIASAG 215 (487)
T ss_pred -------------EeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCC-------CCEEEEcC
Confidence 78999995 5688999999999999999874 44444568899999999988 44899999
Q ss_pred ccCcccC--CCCC-ccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 374 YRQAHEN--SSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 374 ~d~~~iw--~~~~-~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
....++| ..++ .+.....|...|+|+++..++..|.+|+ ++.+.+|+
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 8888999 3344 4444455999999999999999999999 77799987
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=185.07 Aligned_cols=250 Identities=13% Similarity=0.122 Sum_probs=176.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
..|+..-+.|+| .++|+.+.+++.||.|++|+....+ ...+.. +.+ .+.+++.. ...+..
T Consensus 10 yaht~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~------------~v~~ia~~--s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGE------------LVSSIACY--SNHFLT 71 (933)
T ss_pred hhccCceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCc------------eeEEEeec--ccceEE
Confidence 467777899999 8999999999999999999976542 111110 222 22222222 224444
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 186 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 186 (421)
++. ..++..+....+.....+ ..-+-++++++|+.+|+++|.| +|-.|++-++....+.. .+.+|
T Consensus 72 ~s~--~~tv~~y~fps~~~~~iL----~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------~lrgh 137 (933)
T KOG1274|consen 72 GSE--QNTVLRYKFPSGEEDTIL----ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------VLRGH 137 (933)
T ss_pred eec--cceEEEeeCCCCCcccee----eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--------eeccc
Confidence 444 335566655554222222 2335689999999999999999 99999999998444333 23899
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEe
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR 265 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~ 265 (421)
.++|.++.|+|++ ++||+.+.||.|++||+.++.+. +.+.. ...... ......+..++|+|+ |++++.+
T Consensus 138 ~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~-v~k~n~----~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 138 DAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTG-VDKDNE----FILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred CCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhccc-CCcccc----ccccceeeeeeecCCCCeEEeec
Confidence 9999999999999 99999999999999999987654 33322 000000 001456788999999 5555566
Q ss_pred cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
.++.|++|+... .+....+....... .+..+.|+|+|+|||+++.||.|.|||+++
T Consensus 208 ~d~~Vkvy~r~~-we~~f~Lr~~~~ss-------------~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKG-WELQFKLRDKLSSS-------------KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCC-ceeheeeccccccc-------------ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 779999999975 66666665433221 016899999999999999999999999986
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=7.3e-24 Score=179.18 Aligned_cols=252 Identities=17% Similarity=0.220 Sum_probs=194.6
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
+..+.+|++.... .....++ .|-.+.|+++.|.++++.++++ .|+.+++|++. ..+... ++.+|++.|+
T Consensus 196 Dr~Ik~W~v~~~k-~~~~~tL-aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~-------TLsGHtdkVt 265 (459)
T KOG0288|consen 196 DRIIKLWNVLGEK-SELISTL-AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRH-------TLSGHTDKVT 265 (459)
T ss_pred hhhhhhhhcccch-hhhhhhh-hccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhh-------hhccccccee
Confidence 4589999886652 3456666 7888899999999999988887 99999999998 566665 4589999999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i 270 (421)
++.|.... ..+++|+.|.+|++||+...... +.+-. .+.+..|..+ +..+++|. +++|
T Consensus 266 ~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~----kt~l~--------------~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 266 AAKFKLSH-SRVVSGSADRTIKLWDLQKAYCS----KTVLP--------------GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred eehhhccc-cceeeccccchhhhhhhhhhhee----ccccc--------------cccccceEec--ceeeeecccccce
Confidence 99999887 66999999999999999986543 22222 2455666665 45666774 4899
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC---
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK--- 347 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--- 347 (421)
++||.+. ..+......+... +++..+++|..|.+.+.|.++.+.|+++. ....++.+..
T Consensus 325 RfwD~Rs-~~~~~sv~~gg~v----------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 325 RFWDIRS-ADKTRSVPLGGRV----------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKC 386 (459)
T ss_pred EEEeccC-CceeeEeecCcce----------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccc
Confidence 9999986 7777777766632 79999999999999999999999999987 5555554332
Q ss_pred -CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccc--cCeEEEEEccCCCeEEEecC-CceEEEe
Q 014644 348 -NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLS--SKLLHLAWHPTTNLIACANG-NSLFFHY 420 (421)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~--~~v~~~~~spd~~~la~~~~-~~~~i~~ 420 (421)
...+.+.|+|+ ..++++|+.||. +|| ..+.......... ..|++++|+|.|..|++++. ..+.+|.
T Consensus 387 asDwtrvvfSpd-------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 387 ASDWTRVVFSPD-------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccceeEECCC-------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 33788999999 449999999999 999 3333333333222 26999999999999999984 4577773
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=2e-22 Score=179.44 Aligned_cols=312 Identities=16% Similarity=0.148 Sum_probs=206.2
Q ss_pred EEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644 37 NRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 115 (421)
Q Consensus 37 ~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 115 (421)
.+..|++.++ ...|+.+-.||.|.++|......+ ..+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr------~ee------------------------------------ 90 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR------LEE------------------------------------ 90 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc------hhh------------------------------------
Confidence 3478876666 457888999999999998764421 000
Q ss_pred eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644 116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 194 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (421)
..++.. ..|.+.|..+.|-|....|+++ .|.++++||++ ...+...- .+.+|...|.+++
T Consensus 91 ------------~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~~-----~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 91 ------------RQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGGR-----LNLGHTGSVKSEC 151 (720)
T ss_pred ------------hhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecce-----eecccccccchhh
Confidence 223334 6899999999999966678887 99999999999 44444321 2378999999999
Q ss_pred EecCCCCeEEEEEcCCeEEEEECCccccc--cc-chhhhccccccCCCcc-------cccccccceeE---EEEcCCCCE
Q 014644 195 FHPIYCNLLAYSSSRGFVRLVDMRQSALC--DH-SARILRDAAESHGSKS-------FFTEIIASISD---IKFANDGQH 261 (421)
Q Consensus 195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~-~~~~~~~h~~~~~~~~-------~~~~~~~~v~~---~~~s~~~~~ 261 (421)
|.|..+..|++|+.||.|.|||++-.... .. .......|...+.+.+ .-..+...|.+ +.+..|...
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 99999889999999999999999865410 00 0122333333221111 12333444444 555568888
Q ss_pred EEEec--CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 262 LLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 262 l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
||+++ |+.|++||+++ ....... .........+.+..-.++.++.....|.+|++.+.|+.|+.|++......
T Consensus 232 laSaga~D~~iKVWDLRk-~~~~~r~----ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRK-NYTAYRQ----EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eeeccCCCcceEEEeecc-ccccccc----CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 88764 49999999986 3221111 11111111223333445578888888899988888999999999875332
Q ss_pred -eeEEecCCCCccce--eeecCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEEEEEccC--CCeEEE
Q 014644 340 -GITVEAGKNENRKP--ILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPT--TNLIAC 410 (421)
Q Consensus 340 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd--~~~la~ 410 (421)
...+.++...-.-+ ..+|+ ..+|++|+.|.. .+| ..........+|...|+.++|.|. .+.+.+
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd-------~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPD-------DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred chhhccCcccceeeeeeecCCC-------CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence 22233332221111 23344 348999999999 999 444566677899999999999776 556666
Q ss_pred ecCCceEEEeC
Q 014644 411 ANGNSLFFHYA 421 (421)
Q Consensus 411 ~~~~~~~i~~~ 421 (421)
..+.++.||+.
T Consensus 380 SdD~~~kiW~l 390 (720)
T KOG0321|consen 380 SDDFRVKIWRL 390 (720)
T ss_pred ccCcceEEEec
Confidence 33667999973
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=164.57 Aligned_cols=253 Identities=12% Similarity=0.178 Sum_probs=183.6
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
++|.+.|++++|+.||++|+++ .|++|++|+++.-. +..+.+. .+++ -+..+.+.|.||-...+++.-...++
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---~nve--~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR---QNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh---cccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence 8999999999999999999998 99999999997211 1111110 1111 13568899999985566666677889
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 291 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~ 291 (421)
++|-+...+-- ....|.......++-..|.-.+-.+-...++++|++++. ..|.+|+++ ++.+..+...+..
T Consensus 158 ~vyk~~K~~dG-----~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 158 CVYKLVKKTDG-----SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEeeecccC-----CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecccccc
Confidence 99987654311 011111111222334556777888888888999999976 899999997 8888877665543
Q ss_pred ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-------CceeEEecCCCCccceeeecCCccccc
Q 014644 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-------AGGITVEAGKNENRKPILQAAPRARRS 364 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
. +.++.||+|++|++++..-.|++|.+--+. .....|.||.+.|...+|+++
T Consensus 231 n---------------~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------ 289 (420)
T KOG2096|consen 231 N---------------YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------ 289 (420)
T ss_pred c---------------cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------
Confidence 3 578999999999999999999999864321 235678999999999999998
Q ss_pred ccceeeeecccCc-ccCCCC------Ccccc-------ccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644 365 SLSNLTRGLYRQA-HENSSS------GHHEL-------SYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 365 ~~~~l~~g~~d~~-~iw~~~------~~~~~-------~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
...+++.+.||. ++|+.+ +.... +..-......|+.+|.|+.||.+....|.+|++
T Consensus 290 -S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 290 -STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred -cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 348999999999 999332 11111 112233445899999999999999888888864
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.8e-21 Score=171.43 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=150.6
Q ss_pred eEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE-EEcCCeEEEEEC
Q 014644 141 INSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDM 217 (421)
Q Consensus 141 v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d~~v~iwd~ 217 (421)
+.+++|+|+++.+ +++ .++.|++||.. .++....+ ..+. .+..++|+|++ +.+++ ++.++.|++||+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~~-~~~~~~~~~~g-~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTL-------PSGP-DPELFALHPNG-KILYIANEDDNLVTVIDI 102 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEec-------cCCC-CccEEEECCCC-CEEEEEcCCCCeEEEEEC
Confidence 5679999999877 456 88999999998 44444332 2222 34678999999 66654 456899999999
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeeccCccccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL 295 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 295 (421)
++.+.. ..+.. ...+..++|+|+|++++++.. ..+.+||.++ ++...........
T Consensus 103 ~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~---- 159 (300)
T TIGR03866 103 ETRKVL----AEIPV--------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVLVDQRP---- 159 (300)
T ss_pred CCCeEE----eEeeC--------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEEcCCCc----
Confidence 875432 22221 234678999999999988754 4577889875 5554443322222
Q ss_pred ccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEecCC-----CC--ccceeeecCCcccccccc
Q 014644 296 CDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK-----NE--NRKPILQAAPRARRSSLS 367 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~ 367 (421)
..++|+|++++|+++ ..++.|++||+.++ .....+..+. .. ...+.++++ ++
T Consensus 160 ------------~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~d--g~----- 219 (300)
T TIGR03866 160 ------------RFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKD--GK----- 219 (300)
T ss_pred ------------cEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCC--CC-----
Confidence 478999999988654 46999999999987 3333333221 11 234667766 33
Q ss_pred ee-eeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEec--CCceEEEeC
Q 014644 368 NL-TRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHYA 421 (421)
Q Consensus 368 ~l-~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~~ 421 (421)
.+ ++...++. .+|+.. ........+...+.+++|+|++++|++++ ++.|.+|+.
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 33 33333444 888432 22222223455788999999999998864 677999974
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.4e-21 Score=167.19 Aligned_cols=332 Identities=11% Similarity=0.123 Sum_probs=225.8
Q ss_pred ccccEEEEEEEEcCCCCeEEEE--eCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 32 IEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~--s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+..|.+++|++...|.+|+.- +.+..+.+||.+.+. ...... .++.|....|+|.+..+.....
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~--sne~v~~a~FHPtd~nliit~G---------- 220 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT--SNEVVFLATFHPTDPNLIITCG---------- 220 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee--ccceEEEEEeccCCCcEEEEeC----------
Confidence 4678999999876667777665 567789999998765 222211 2333333444444333322221
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.+.+.+|..+.+.-.+....+.+.....|.|++|.++|+ +++| .+|.|.||+.. ..+..+.. ..|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~~-------~aH~ 287 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQV-------HAHD 287 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeEe-------eecC
Confidence 346788887776555555566334457799999999986 4678 99999999997 44444433 4799
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc-------chh-hhccc---------------cccCCCccccc
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDA---------------AESHGSKSFFT 244 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------~~~-~~~~h---------------~~~~~~~~~~~ 244 (421)
+.|.+++...+| .|++|+.|+.|..||-.-.+.... ..+ +.+.+ ...........
T Consensus 288 ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 288 GGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred CceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 999999999998 456699999999998322111000 000 00000 00000111235
Q ss_pred ccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644 245 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 323 (421)
Q Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s 323 (421)
+|......++.+|+...+++++. +.+++|+ . .++.......... .++.|+|.| .+|.|+
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~~~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------ECADFHPSG-VVAVGT 425 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------eEeeccCcc-eEEEee
Confidence 67788899999999988888766 9999999 2 4444433332222 589999999 999999
Q ss_pred CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccc--cccccCeEE
Q 014644 324 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS--YNLSSKLLH 398 (421)
Q Consensus 324 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~--~~~~~~v~~ 398 (421)
..|...+.|.++. ....+.....++..+.|+|+ +.+||.|+.|+. .|+ +.++..... +-+...|+.
T Consensus 426 ~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~-------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 426 ATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPD-------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITH 496 (626)
T ss_pred ccceEEEEecccc--eeEEEEecCCceEEEEEcCC-------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence 9999999999874 33344444889999999999 459999999999 888 333333322 122388999
Q ss_pred EEEccCCCeEEEecCCc-eEEE
Q 014644 399 LAWHPTTNLIACANGNS-LFFH 419 (421)
Q Consensus 399 ~~~spd~~~la~~~~~~-~~i~ 419 (421)
+.||+|+++|.+.+.|- |..|
T Consensus 497 LDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceEEeccCceEEEEE
Confidence 99999999999999654 7666
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.2e-24 Score=193.28 Aligned_cols=233 Identities=20% Similarity=0.284 Sum_probs=197.1
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
..|...|.++..-..++.+++| .|..+.||.+....... .+.+|..+|.++.|++.. .+|++|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5788889888887778899998 99999999987333322 248899999999999998 9999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
+||+...... +.+.+ |...+.++.|+|-+.|.++|+. ..+++||.+. ..+...+.+|...+
T Consensus 96 ~wDleeAk~v----rtLtg-------------h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 96 VWDLEEAKIV----RTLTG-------------HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVV 157 (825)
T ss_pred eeehhhhhhh----hhhhc-------------cccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCccee
Confidence 9999976543 44444 5889999999999999998865 9999999986 78888898877755
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG 372 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 372 (421)
..+.|+|+|++++.|++|..++|||+..+ .....+..|...+..+.|.|. ..++++|
T Consensus 158 ---------------~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~-------e~Lla~G 214 (825)
T KOG0267|consen 158 ---------------DVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPL-------EVLLAPG 214 (825)
T ss_pred ---------------EEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCch-------hhhhccC
Confidence 67899999999999999999999999887 778889999999999999888 4589999
Q ss_pred cccCc-ccCCCC--CccccccccccCeEEEEEccCCCeEEEecCCceE
Q 014644 373 LYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417 (421)
Q Consensus 373 ~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~ 417 (421)
+.|+. ++|+.. +.+.........|.+++|+|++..+++|...++.
T Consensus 215 s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred CCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999 999554 3444444557789999999999999999866554
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.9e-24 Score=193.57 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=164.6
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
.+|..+|.++.|+++..+|++| .+|+|++||++ ....++ ++.+|...+.++.|+|-+ .+.++++.|+.++
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITSVDFHPYG-EFFASGSTDTDLK 137 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcceeeeccce-EEeccccccccce
Confidence 7999999999999999999999 99999999999 555565 458999999999999999 8999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
+||.+...+. +.+.. |...+..+.|+|+|++++.+++ ..++|||+.. ++....|..|+..+
T Consensus 138 iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 138 IWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKV 199 (825)
T ss_pred ehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccc
Confidence 9999965433 44444 4788999999999999999977 9999999985 99999999888765
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG 372 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 372 (421)
..+.|+|..-++++|+.|+++++||+++. ..+.........|.+.+|.++ ++ .+++|
T Consensus 200 ---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~--~~-----~~~~G 256 (825)
T KOG0267|consen 200 ---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPD--GK-----IVLSG 256 (825)
T ss_pred ---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCC--ce-----eeecC
Confidence 67889999889999999999999999976 445555566788999999998 44 56666
Q ss_pred cccCc
Q 014644 373 LYRQA 377 (421)
Q Consensus 373 ~~d~~ 377 (421)
.....
T Consensus 257 ~q~sl 261 (825)
T KOG0267|consen 257 EQISL 261 (825)
T ss_pred chhhh
Confidence 65544
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.1e-20 Score=163.92 Aligned_cols=315 Identities=12% Similarity=0.095 Sum_probs=217.7
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 113 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 113 (421)
.-|.|+.| .++| -++||.++|.|.||+..+..+.+... .|.+ .++++..-.+++.+. |.. +
T Consensus 247 k~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~g------------gv~~L~~lr~GtllS-GgK--D 307 (626)
T KOG2106|consen 247 KFVLCVTF--LENG-DVITGDSGGNILIWSKGTNRISKQVH-AHDG------------GVFSLCMLRDGTLLS-GGK--D 307 (626)
T ss_pred eEEEEEEE--cCCC-CEEeecCCceEEEEeCCCceEEeEee-ecCC------------ceEEEEEecCccEee-cCc--c
Confidence 45899999 4554 46899999999999997766433333 4444 555555555555555 433 3
Q ss_pred cceeEEeeccc--------cee-----------------------------eeeeeecCCCCcceEEEeecCCCCEEEEE
Q 014644 114 MATKIANVGNS--------VHA-----------------------------RCQKVYPHAHDFNINSISNNSDCETFVSA 156 (421)
Q Consensus 114 ~~~~~~~~~~~--------~~~-----------------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 156 (421)
..+..||-.-. .+. ....+. .+|......++.+|+..+++++
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV-QGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE-EecccceeeEEcCCChhheeec
Confidence 34445541110 000 000122 5788889999999999999998
Q ss_pred -cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccc
Q 014644 157 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 235 (421)
Q Consensus 157 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~ 235 (421)
.|+.+++|+ + ....+..+ -..++.|+.|+|.| .++.|...|...+.|..+... +..|
T Consensus 387 gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l-------v~~~-- 444 (626)
T KOG2106|consen 387 GQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL-------VTIH-- 444 (626)
T ss_pred cCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEEEeeccceEEEEeccccee-------EEEE--
Confidence 999999999 3 33333322 34778999999997 888999999999999988533 2222
Q ss_pred cCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644 236 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 314 (421)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 314 (421)
.. ..+++.++|+|+|.+||.|+. +.|+||.+...+....+...+... .++.+.||+
T Consensus 445 --------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~ 501 (626)
T KOG2106|consen 445 --------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSS 501 (626)
T ss_pred --------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecC
Confidence 11 568999999999999999987 999999998767666665544431 127999999
Q ss_pred CCCEEEEeeCCCeEEEEecCCCCCcee-----------E------EecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644 315 DGLHFATGSYSNLLRIFSHGVGSAGGI-----------T------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 377 (421)
|++++.+.+.|-.|-.|.-....+... + ...+...++.++-+.. ...+|+|...|+
T Consensus 502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~-------~~~lA~gdd~g~ 574 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHC-------EKLLASGDDFGK 574 (626)
T ss_pred CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhh-------hhhhhccccCce
Confidence 999999999999999994332111000 0 0123333444443333 338899999999
Q ss_pred -ccCC-----CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 378 -HENS-----SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 378 -~iw~-----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+++. .........+|++-|++++|.-+...|++.+ +.++..|.
T Consensus 575 v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 575 VHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred EEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 8882 2234456678999999999998888877766 66788885
No 131
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=7.1e-22 Score=162.63 Aligned_cols=327 Identities=13% Similarity=0.172 Sum_probs=210.3
Q ss_pred Cccccccc--cccccEEEEEEEEcC--C-CCeEEEEeCCCcEEEeecCCce-eE---EeeecCCCCCcccccccccccce
Q 014644 23 EFDYLKSL--EIEEKINRVRWCAAP--N-GSMFILSTNDKTIKLWKVRDQK-VK---KIKEMDHFPFVSSENTLLAEKNF 93 (421)
Q Consensus 23 ~~~~~~~~--~h~~~V~~v~~~~~~--~-~~~l~t~s~d~~v~lwd~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~ 93 (421)
.|.+...+ +|+.+|..++|-+-. + ...+||++. +.+.+|.....- .. ......+.+ ..
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~E------------sf 92 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDE------------SF 92 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCc------------ce
Confidence 34444433 578889999993211 2 334555554 588899865433 22 222222222 33
Q ss_pred eeccCC----CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCC
Q 014644 94 MNEHNP----PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLE 167 (421)
Q Consensus 94 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~ 167 (421)
+.+++. ....+++.++. .+.+++.|+.+. ++.+.+ .+|...|+.+.+.|+. ++++++ .|.+|++|+++
T Consensus 93 ytcsw~yd~~~~~p~la~~G~--~GvIrVid~~~~---~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGY--LGVIRVIDVVSG---QCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred EEEEEEecCCCCCeeEEeecc--eeEEEEEecchh---hhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 333322 23455665553 678999999888 888888 9999999999999965 677778 99999999999
Q ss_pred CCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC------c-
Q 014644 168 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS------K- 240 (421)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~------~- 240 (421)
+..++.++. -+.+|.+.|.++.|+++| .+|++++.|.+|++|++...+...+....+.- ...+.. .
T Consensus 167 -~~~Cv~VfG----G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~-~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 167 -TDVCVAVFG----GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITY-SPNKTTRPFPTPKT 239 (385)
T ss_pred -CCeEEEEec----ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhccc-CCCCccCcCCcccc
Confidence 788888884 558999999999999999 89999999999999999965433211111110 000000 0
Q ss_pred -----ccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644 241 -----SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 314 (421)
Q Consensus 241 -----~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 314 (421)
.....|...|.++.|- |.++++-+- +.|..|....-++.+...+..+.....+....-..+-.+....+|.|
T Consensus 240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 0124577888888887 788888654 89999987221222222222222222221111111111225678888
Q ss_pred CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcccccccccc
Q 014644 315 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS 394 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~ 394 (421)
-+++||.|.+.|.|++||++........ .+.-+ ....
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~t---------tl~~s----------------------------------~~~~ 354 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCT---------TLTHS----------------------------------KSGS 354 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCc---------eEEec----------------------------------cccc
Confidence 8999999999999999999977332111 01111 0146
Q ss_pred CeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644 395 KLLHLAWHPTTNLIACANGN-SLFFHY 420 (421)
Q Consensus 395 ~v~~~~~spd~~~la~~~~~-~~~i~~ 420 (421)
.|...+|+.|+.+|+..+++ .+.=|+
T Consensus 355 tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 355 TVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 78899999999998887754 466554
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=3.3e-22 Score=162.25 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=169.7
Q ss_pred CCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCce------eeeee-ecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644 135 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ------CFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAY 205 (421)
Q Consensus 135 ~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~------~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 205 (421)
.-|.+.|+++...+ .|+++++| .||.|.+||++...+ ..+.. .+....-.+|...|.++.|-|-....+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 67999999999987 68999999 999999999974321 00000 01112336788999999999976578889
Q ss_pred EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---CCEEEEecC-CeEEEEECCCCCcc
Q 014644 206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP 281 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-~~i~i~d~~~~~~~ 281 (421)
++.|.++++||..+-+.. ..|.. ++.|.+-+|+|- ..++|+|.+ -+|++.|+.+ +..
T Consensus 120 sSFDhtlKVWDtnTlQ~a----~~F~m--------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~ 180 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA----VDFKM--------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSF 180 (397)
T ss_pred ccccceEEEeecccceee----EEeec--------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccc
Confidence 999999999999986543 34444 567888888884 447778876 8999999996 999
Q ss_pred eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE-EEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
...+.+|.+.+ .++.|+|...+ |++|+.||.|++||++.......++..|... + .|
T Consensus 181 sH~LsGHr~~v---------------laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-~----~p--- 237 (397)
T KOG4283|consen 181 SHTLSGHRDGV---------------LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-R----PP--- 237 (397)
T ss_pred eeeeccccCce---------------EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-c----Cc---
Confidence 99999999866 89999998776 6899999999999999775666777766541 0 00
Q ss_pred ccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 361 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 361 ~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.+.....|.+.|..++|+.|+.++++.+ ++++++||
T Consensus 238 ------------------------~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 238 ------------------------ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ------------------------cccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 1112345678899999999999988666 78899997
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=8.6e-22 Score=160.35 Aligned_cols=235 Identities=12% Similarity=0.139 Sum_probs=172.3
Q ss_pred CCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 135 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
..-.+.|.+|+|||... +++++ .|++||+|+++..+.... ..+..|.++|.+++|+.+| ..+++|+.|+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------hhhhccCCCeEEEEEccCC-ceEEeeccCCce
Confidence 44567899999999544 45466 999999999985444332 2346799999999999999 999999999999
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--EEEEecC-CeEEEEECCCCCcceeEEeecc
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
++||+.+++. ..+.. |..+|..+.|-+... .|++|+. .+|+.||++. ..++.++..++
T Consensus 97 k~wDL~S~Q~-----~~v~~-------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPe 157 (347)
T KOG0647|consen 97 KLWDLASGQV-----SQVAA-------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPE 157 (347)
T ss_pred EEEEccCCCe-----eeeee-------------cccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccc
Confidence 9999999863 34445 488999999988655 7889986 9999999996 88888887766
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecCCcccccccce
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAAPRARRSSLSN 368 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (421)
.. ++ .+--..+++++..+..|.+|+++++..+..... .-.-.+++++...++. .
T Consensus 158 Rv----------------Ya--~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-------~ 212 (347)
T KOG0647|consen 158 RV----------------YA--ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-------G 212 (347)
T ss_pred ee----------------ee--hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-------c
Confidence 42 22 222355788888999999999987644333322 2334567888877743 4
Q ss_pred eeeecccCc-ccC--CCC--Cccccccccc---------cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 369 LTRGLYRQA-HEN--SSS--GHHELSYNLS---------SKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 369 l~~g~~d~~-~iw--~~~--~~~~~~~~~~---------~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.+.|+..|. .+. +.. .......-|+ ..|.+++|||....|++++ ++.+.+|+
T Consensus 213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 588888888 555 221 1222222222 3688999999988888776 66688886
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7e-22 Score=169.86 Aligned_cols=234 Identities=16% Similarity=0.115 Sum_probs=179.3
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
..++|+++.- +|.|.+|+.|+-.|.|.+|.+.+|.+
T Consensus 80 ~Pg~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~L------------------------------------------ 115 (476)
T KOG0646|consen 80 LPGPVHALAS--SNLGYFLLAGTISGNLYLWELSSGIL------------------------------------------ 115 (476)
T ss_pred cccceeeeec--CCCceEEEeecccCcEEEEEeccccH------------------------------------------
Confidence 4678999988 78899999998999999999999752
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCC-CCCCccCCC
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEV 189 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (421)
+.++ .+|-..|+++.|+.||.+|++| .||.|.+|.+..--........++ ..+..|+-+
T Consensus 116 ------------------L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 116 ------------------LNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred ------------------HHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 2223 6899999999999999999999 999999998642111111001111 345889999
Q ss_pred eeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 190 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 190 v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
|+.+...+.+ ..+|+++|.|.++++||+..+.+. ..+.. ...+.+++++|.++.+..|+.
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCc
Confidence 9999888764 368999999999999999998655 22222 468999999999999999976
Q ss_pred CeEEEEECCCCC---------------cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644 268 MNLKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 332 (421)
Q Consensus 268 ~~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd 332 (421)
|.|.+.++.... ..+..+.+|.... .|++++.+-||..|++|+.||.++|||
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~-------------~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES-------------AITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCc-------------ceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 999988875311 1233344554411 237999999999999999999999999
Q ss_pred cCCCCCceeEEecCCCCccceeeecCCc
Q 014644 333 HGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
+... +.++++....++|+.+.+.|-.+
T Consensus 306 i~S~-Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 306 IYSK-QCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred cchH-HHHHHHhhhccccceeEeecccc
Confidence 9976 66777777888898888866533
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3.2e-22 Score=178.10 Aligned_cols=142 Identities=11% Similarity=0.103 Sum_probs=111.7
Q ss_pred ceeEEEEcC-CCCEEEEecC-CeEEEEECCCCC------cceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEE
Q 014644 249 SISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDS------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHF 319 (421)
Q Consensus 249 ~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l 319 (421)
.|+.+.|.| |.+.|+.+++ |.|++|.+...+ ++...+.+|...+ +++.|+|- ...|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI---------------~slRfHPLAadvL 693 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI---------------TSLRFHPLAADVL 693 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE---------------EEEEecchhhhHh
Confidence 467888888 6677887766 999999996532 3456677777654 79999994 6689
Q ss_pred EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC---CCCCcccccccc-cc
Q 014644 320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNL-SS 394 (421)
Q Consensus 320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~-~~ 394 (421)
+++++|.+|++||+.+. .....+.+|++.+..++|+|+ |+ .+|+-++||. +++ ...+.+....+- ..
T Consensus 694 a~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpd--Gr-----~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt 765 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPD--GR-----RIATVCKDGTLRVYEPRSREQPVYEGKGPVGT 765 (1012)
T ss_pred hhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCC--Cc-----ceeeeecCceEEEeCCCCCCCccccCCCCccC
Confidence 99999999999999998 778999999999999999999 55 8999999999 999 233333333222 23
Q ss_pred CeEEEEEccCCCeEEEecC
Q 014644 395 KLLHLAWHPTTNLIACANG 413 (421)
Q Consensus 395 ~v~~~~~spd~~~la~~~~ 413 (421)
+-..+.|.-||+++++.+-
T Consensus 766 RgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 766 RGARILWACDGRIVIVVGF 784 (1012)
T ss_pred cceeEEEEecCcEEEEecc
Confidence 3456889999999988773
No 136
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.1e-22 Score=175.62 Aligned_cols=235 Identities=18% Similarity=0.269 Sum_probs=183.8
Q ss_pred ccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 26 YLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 26 ~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
|+.++ .|.+.|+.+..+ .+++.|+++|.|-+|++|+...+..
T Consensus 65 ~~asme~HsDWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~----------------------------------- 107 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT----------------------------------- 107 (735)
T ss_pred hhhhhhhhHhHHhhHHhh--cCCCceEEecCCceEEEeecccCcc-----------------------------------
Confidence 45555 478999999995 6688999999999999999876420
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEee-cCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeec-CC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM-KP 180 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~-~~ 180 (421)
-|..++ ..|.+-|.|++. .++...+|+| -|+.|.+||++.... ++..++. ..
T Consensus 108 -----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 108 -----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred -----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 344445 789999999999 7788888888 999999999984322 2222211 11
Q ss_pred CCCC-ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 181 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 181 ~~~~-~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
..+. ++...|++++.++.| ..|++|+..+-+++||.++.... ..+ .+|...|..+..++||
T Consensus 164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki----mkL-------------rGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI----MKL-------------RGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccce----eee-------------eccccceEEEEEcCCC
Confidence 2333 788999999999999 99999999999999999987533 222 3458999999999999
Q ss_pred CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644 260 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 338 (421)
Q Consensus 260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~ 338 (421)
..+++++. |+|++||+.. .+++.++..|...+ +++..+|+-.++++|+.||.|+.=|+++. .
T Consensus 226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~ 288 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP-A 288 (735)
T ss_pred CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc-h
Confidence 99999865 9999999985 89999999999865 89999999999999999999999999985 3
Q ss_pred ceeEEecCCCCccceeee
Q 014644 339 GGITVEAGKNENRKPILQ 356 (421)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (421)
....+-....++..+...
T Consensus 289 ~~tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 289 KSTLICKEDAPVLKLHLH 306 (735)
T ss_pred hheEeecCCCchhhhhhc
Confidence 333333344444444443
No 137
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4e-21 Score=157.38 Aligned_cols=237 Identities=16% Similarity=0.139 Sum_probs=177.3
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAY 205 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s 205 (421)
.++-.+ ..|.+.|++++.+ +.++|+| .|-+|+|||+....+.- .+-.|.+.|+++.|.+.- ...|++
T Consensus 34 ~~lF~~-~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg--------~ll~HagsitaL~F~~~~S~shLlS 102 (362)
T KOG0294|consen 34 KPLFAF-SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG--------ILLSHAGSITALKFYPPLSKSHLLS 102 (362)
T ss_pred eccccc-cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc--------ceeccccceEEEEecCCcchhheee
Confidence 344556 8999999999995 8999999 99999999998444433 235799999999999875 128999
Q ss_pred EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeE
Q 014644 206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT 284 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~ 284 (421)
|+.||.|.+|+...-... +.+.. |...|+.++.+|.|++.++- +|+.+++||+-+ ++....
T Consensus 103 ~sdDG~i~iw~~~~W~~~----~slK~-------------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v 164 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELL----KSLKA-------------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-GRVAFV 164 (362)
T ss_pred ecCCCcEEEEEcCCeEEe----eeecc-------------cccccceeEecCCCceEEEEcCCceeeeehhhc-Ccccee
Confidence 999999999999875433 45545 47889999999999987764 569999999976 666555
Q ss_pred EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644 285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
+...... ..+.|+|.|.+++.+.. ..|-||.+.+. .....+ ..+.+.....+..
T Consensus 165 ~~L~~~a----------------t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A-~v~~~i---~~~~r~l~~~~l~----- 218 (362)
T KOG0294|consen 165 LNLKNKA----------------TLVSWSPQGDHFVVSGR-NKIDIYQLDNA-SVFREI---ENPKRILCATFLD----- 218 (362)
T ss_pred eccCCcc----------------eeeEEcCCCCEEEEEec-cEEEEEecccH-hHhhhh---hccccceeeeecC-----
Confidence 5544443 46899999998887775 56888988765 221111 1222233333221
Q ss_pred ccceeeeecccCc-ccCCC--CCccccccccccCeEEEEE--ccCCCeEEEec-CCceEEEe
Q 014644 365 SLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAW--HPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 365 ~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~--spd~~~la~~~-~~~~~i~~ 420 (421)
.+.|++|+.++. ++|+. ........+|..+|-++.+ .|++.+|++++ ++.|.+|+
T Consensus 219 -~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 219 -GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred -CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 347999999999 99943 4556677799999999884 67889999888 56699997
No 138
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=2.2e-21 Score=164.01 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=202.8
Q ss_pred cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
.++|..+.| .+++. .++||+.|..|++|.+..++... +
T Consensus 13 ~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~-------~-------------------------------- 51 (434)
T KOG1009|consen 13 HEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGG-------G-------------------------------- 51 (434)
T ss_pred CCceEEEEe--ccCcccceecccCccceeeeeeeecCCCC-------C--------------------------------
Confidence 467899999 55544 99999999999999987754100 0
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC-------C-----ceeeeeeec
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-------S-----DQCFNIVDM 178 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~-------~-----~~~~~~~~~ 178 (421)
...+ +.+..+ ..|...|+++.|+|+|++||+| ++|.|.+|.... . .+.+.+.
T Consensus 52 ---~~~V---------~y~s~L-s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-- 116 (434)
T KOG1009|consen 52 ---DMKV---------EYLSSL-SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-- 116 (434)
T ss_pred ---ceeE---------EEeecc-cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE--
Confidence 0001 333445 7899999999999999999999 999999997651 0 1111111
Q ss_pred CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644 179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (421)
..+.+|...|+.++|+|++ .++++++.|.++++||+..+... ..+.. |...+..++|.|-
T Consensus 117 --k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~d-------------h~~yvqgvawDpl 176 (434)
T KOG1009|consen 117 --KVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILDD-------------HEHYVQGVAWDPL 176 (434)
T ss_pred --EEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----eeccc-------------cccccceeecchh
Confidence 2357899999999999999 99999999999999999998754 44444 4889999999999
Q ss_pred CCEEEEec-CCeEEEEECCCCCcceeEEe-----e--ccCcccccccccCCCccee-eeEEEEcCCCCEEEEeeC----C
Q 014644 259 GQHLLSRD-YMNLKLWDIRMDSTPVATFK-----I--HEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSY----S 325 (421)
Q Consensus 259 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~~s~----d 325 (421)
++++++-+ +...+.+.+.. .+.++... . ..........+++++..-. ...++|+|+|.++++.+. +
T Consensus 177 ~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 177 NQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 99999854 36566666653 22222111 1 1111112223444443321 167899999999987642 2
Q ss_pred C-----eEEEEecCCCCCceeEEecCCCCccceeeecCCccc--cc---------ccceeeeecccCcccCCCCC--ccc
Q 014644 326 N-----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR--RS---------SLSNLTRGLYRQAHENSSSG--HHE 387 (421)
Q Consensus 326 g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~l~~g~~d~~~iw~~~~--~~~ 387 (421)
+ ..++++-....+....+.+-..+.-.+.++|-.--- .. -...+|.+..+...+++.+. .+.
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence 2 346666555445566666666666555555531000 00 01244556666656664332 222
Q ss_pred c-ccccccCeEEEEEccCCCeEEEecCCce
Q 014644 388 L-SYNLSSKLLHLAWHPTTNLIACANGNSL 416 (421)
Q Consensus 388 ~-~~~~~~~v~~~~~spd~~~la~~~~~~~ 416 (421)
. .--|-..+++++|++||..|++.+.|+.
T Consensus 336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 2 2235678999999999999999997764
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=176.36 Aligned_cols=305 Identities=14% Similarity=0.122 Sum_probs=224.7
Q ss_pred ccccccEEEEEEEE----cCC-----CCeEEEEeCCCcEEEeecCCce---e-E-EeeecCC----------------CC
Q 014644 30 LEIEEKINRVRWCA----APN-----GSMFILSTNDKTIKLWKVRDQK---V-K-KIKEMDH----------------FP 79 (421)
Q Consensus 30 ~~h~~~V~~v~~~~----~~~-----~~~l~t~s~d~~v~lwd~~~~~---~-~-~~~~~~~----------------~~ 79 (421)
+-|..-|..|+-.| ++. ...+.|+++|++||+|+++... . + .+...+. ..
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 45777777777654 111 3458999999999999987632 1 1 0100000 00
Q ss_pred Cccc---ccccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC---CCCEE
Q 014644 80 FVSS---ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETF 153 (421)
Q Consensus 80 ~v~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l 153 (421)
.+.+ +....+..++.++..++++..++.|.- ++.++++++... +..... ..|..+|.||.++. ..++|
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr--~GnlrVy~Lq~l---~~~~~~-eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR--GGNLRVYDLQEL---EYTCFM-EAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCc--cCceEEEEehhh---hhhhhe-ecccceeEEEeecCchhhhHhh
Confidence 1111 112223457889999999999999876 778999998765 444455 89999999999975 35688
Q ss_pred EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhc
Q 014644 154 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231 (421)
Q Consensus 154 ~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 231 (421)
|++ .|+-|.+||+..+-.++. ++.+|...|+++.|.-+| ...+++++.|+.|.+--.+.... ..++.
T Consensus 520 ASasrdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~----g~~f~ 588 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS----GRLFP 588 (1080)
T ss_pred hhccCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC----ceecc
Confidence 888 999999999985555554 458999999999998765 45788899998775433332110 12222
Q ss_pred cccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644 232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 310 (421)
Q Consensus 232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.|.. .-....+..++..|..++++++.. ..|+|||+.+ ++..+.|++.......+ ..+
T Consensus 589 r~t~--------t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~l------------IKv 647 (1080)
T KOG1408|consen 589 RHTQ--------TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDL------------IKV 647 (1080)
T ss_pred cccc--------ccccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCce------------EEE
Confidence 2111 111457899999999999998865 9999999997 99999998765432222 478
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 311 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 311 ~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
...|.|-||++...|.++.++|..++ +......||...|+.+.|.++ .+ .|++.+.||. -+|
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nD--Ck-----HlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLND--CK-----HLISVSGDGCIFVW 710 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeeccc--ch-----hheeecCCceEEEE
Confidence 99999999999999999999999998 788899999999999999998 44 8999999999 999
No 140
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.2e-21 Score=166.55 Aligned_cols=245 Identities=16% Similarity=0.159 Sum_probs=192.0
Q ss_pred eeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee-----------cCCCCCCccCCCeeEEEEec
Q 014644 130 QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD-----------MKPSNMDDLTEVITSAEFHP 197 (421)
Q Consensus 130 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~p 197 (421)
.+.+ ..|.-+|.+++++|+.++.+++ .+++|.-|++.++.....++. .++.. ..|...+.+++.+|
T Consensus 135 ~~~~-~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVI-GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ceee-ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 4455 7899999999999999999999 999999999984432211111 11112 37889999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECC
Q 014644 198 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR 276 (421)
Q Consensus 198 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~ 276 (421)
|+ ++|++|+.|..|.||+.++.... +.+.+ |.+.|.+++|-..-..+.+++ |+.+++|++.
T Consensus 213 Dg-kylatgg~d~~v~Iw~~~t~ehv----~~~~g-------------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 213 DG-KYLATGGRDRHVQIWDCDTLEHV----KVFKG-------------HRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred CC-cEEEecCCCceEEEecCcccchh----hcccc-------------cccceeeeeeecCccceeeeecCCceEEEehh
Confidence 99 99999999999999999986543 55555 599999999987666666654 5999999998
Q ss_pred CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644 277 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 356 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (421)
. ...+.++.+|+..+ .++....-++.+.+|+.|+++++|++. ......+.++.+.+.+++|-
T Consensus 275 ~-~s~vetlyGHqd~v---------------~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 275 Q-LSYVETLYGHQDGV---------------LGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred H-hHHHHHHhCCccce---------------eeechhcccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEe
Confidence 5 77788888998865 566666677888888899999999995 35567788999899999987
Q ss_pred cCCcccccccceeeeecccCc-ccCCCC--Cccc------------cccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 357 AAPRARRSSLSNLTRGLYRQA-HENSSS--GHHE------------LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 357 ~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~------------~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.+ ..+++|+.+|. .+|..- .++. ....+..+|++++..|...++|+|+ ++.+++|.
T Consensus 337 n~--------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 337 ND--------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cc--------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 65 37999999999 999221 1111 1112234899999999999999999 77799996
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.2e-21 Score=164.11 Aligned_cols=249 Identities=13% Similarity=0.066 Sum_probs=190.1
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 193 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (421)
.+.+|.+....... .+ .--.+.|.+++-+|+|.+|+.| ..+.|++|.+. .+.++.++ ..|-..|+++
T Consensus 62 ~l~vw~i~k~~~~~---q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~-------~aHYQ~ITcL 129 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVL-------SAHYQSITCL 129 (476)
T ss_pred cccccccCchhhhh---hh-cccccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHH-------HhhccceeEE
Confidence 56778776542222 11 2346789999999999999999 99999999999 67777654 7899999999
Q ss_pred EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeE
Q 014644 194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNL 270 (421)
Q Consensus 194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i 270 (421)
.|+-|+ .+|++|+.||.|.+|++..-- ..... ..+.....+..|.-+|+.+...+. ..++++++. .++
T Consensus 130 ~fs~dg-s~iiTgskDg~V~vW~l~~lv------~a~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 130 KFSDDG-SHIITGSKDGAVLVWLLTDLV------SADND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred EEeCCC-cEEEecCCCccEEEEEEEeec------ccccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 999999 999999999999999875421 11111 134445567778999999998875 346777665 999
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-------------
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS------------- 337 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~------------- 337 (421)
++||+.. +..+.++.-+... .+++.+|-++.++.|+.+|.|.+.++....
T Consensus 201 k~wdlS~-g~LLlti~fp~si----------------~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 201 KLWDLSL-GVLLLTITFPSSI----------------KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred EEEEecc-ceeeEEEecCCcc----------------eeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 9999986 8777777654433 699999999999999999999998876532
Q ss_pred --CceeEEecCCC--CccceeeecCCcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeE
Q 014644 338 --AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLI 408 (421)
Q Consensus 338 --~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~l 408 (421)
.....+.+|.+ +|.+++.+.+ +.+|++|+.||+ .+|+.. ..+.......++|+.+.+.|--+-.
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~D-------gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTD-------GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecC-------ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccce
Confidence 23556778988 9999999998 449999999999 999443 2333333367889999886654433
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=2.4e-21 Score=174.20 Aligned_cols=228 Identities=13% Similarity=0.170 Sum_probs=183.7
Q ss_pred cccccEEE-EEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 31 EIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 31 ~h~~~V~~-v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
+|.+-|.. +++.+ .++..+++|+.|++|.+|...+.
T Consensus 55 ~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~------------------------------------------ 91 (745)
T KOG0301|consen 55 GPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQA------------------------------------------ 91 (745)
T ss_pred cCcceeeccceecc-ccCcceEeecccceEEEEecCCC------------------------------------------
Confidence 35555665 77743 45566888999999888887664
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.++.++ .+|...|.+++...++. +++| .|.++++|-.. ++.. .+.+|+.
T Consensus 92 ------------------~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~gH~a 141 (745)
T KOG0301|consen 92 ------------------EPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQGHTA 141 (745)
T ss_pred ------------------Cchhhh-hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccCCcch
Confidence 444556 89999999999888887 8888 99999999875 3332 2489999
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 268 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 268 (421)
.|+++..-|.+ .+++|+.|.+|++|.-.+ . .+++.+| .+.|+.+++-+++.++-++.||
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~----l~tf~gH-------------tD~VRgL~vl~~~~flScsNDg 200 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKGGT--L----LKTFSGH-------------TDCVRGLAVLDDSHFLSCSNDG 200 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccCCc--h----hhhhccc-------------hhheeeeEEecCCCeEeecCCc
Confidence 99999999985 889999999999998532 2 3666664 8999999999988777777789
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
.|++|++. ++.+..+.+|+..+ ++++..+++..++++++|++++||+.. ...+.++-...
T Consensus 201 ~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtt 260 (745)
T KOG0301|consen 201 SIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTT 260 (745)
T ss_pred eEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCcc
Confidence 99999993 89999999999876 788888888999999999999999976 55666666666
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.++++.+-+. | -+++|+.||. ++|
T Consensus 261 siWsa~~L~N--g------DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 261 SIWSAKVLLN--G------DIVVGGSDGRVRVF 285 (745)
T ss_pred ceEEEEEeeC--C------CEEEeccCceEEEE
Confidence 7777777654 2 5899999999 999
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=5.1e-20 Score=168.99 Aligned_cols=310 Identities=13% Similarity=0.140 Sum_probs=203.0
Q ss_pred cccccccc-ccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 26 YLKSLEIE-EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 26 ~~~~~~h~-~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
.+.++.|. ++|+.++| ..||+ .||+|+..|.+.+||++..++.......|.+.+....+.+ ...
T Consensus 236 il~sFk~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~------------~ep 301 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP------------GEP 301 (910)
T ss_pred EEEEEEccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC------------CCc
Confidence 45567886 89999999 56765 6777788899999999998755444434433333222222 222
Q ss_pred eeeecccccccceeEEeecccce-eeeeeeecCCCCcceEEEeec-CCCCEEEEE-cCCcEEEEeCCCC------cee--
Q 014644 104 HGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEIS------DQC-- 172 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~-~d~~i~lwd~~~~------~~~-- 172 (421)
.+.+.+. +...++|-.+++.. .+.++.. .||..+..++.|. .+|.++.++ .|++++.+++... ++.
T Consensus 302 Vl~ta~~--DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 302 VLVTAGA--DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred eEeeccC--CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 2222222 23345554433221 2455555 7899999999986 678888887 8888777765311 000
Q ss_pred ------eeee-----ec--------------------------------------------CCCCCCccCCCeeEEEEec
Q 014644 173 ------FNIV-----DM--------------------------------------------KPSNMDDLTEVITSAEFHP 197 (421)
Q Consensus 173 ------~~~~-----~~--------------------------------------------~~~~~~~~~~~v~~~~~~p 197 (421)
+... .+ ++..+......+++++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0000 00 0011122336788999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECC
Q 014644 198 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 276 (421)
Q Consensus 198 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~ 276 (421)
-| ++.+.|+..|.|-+|++.+|-.. ..+.. -+.|..+|++++...-++.+++++. |.+++||..
T Consensus 459 CG-NF~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 459 CG-NFVFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cC-ceEEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 99 99999999999999999997543 33321 1456899999999998988988765 999999997
Q ss_pred CCCcceeEEeeccCcccc---------------------------ccc--ccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644 277 MDSTPVATFKIHEHLRPK---------------------------LCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNL 327 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~---------------------------~~~--~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~ 327 (421)
. +.+...++........ +.. ..+.+.| ++++|||||+||++++.|++
T Consensus 524 ~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri---td~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 524 K-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI---TDMTFSPDGRWLISASMDST 599 (910)
T ss_pred C-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce---eeeEeCCCCcEEEEeecCCc
Confidence 5 4433333221111000 000 0123333 89999999999999999999
Q ss_pred EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC
Q 014644 328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN 380 (421)
Q Consensus 328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw 380 (421)
|++||+.++ .++-.+ .-..+...+.++|. +.+||+...|.. .+|
T Consensus 600 Ir~wDlpt~-~lID~~-~vd~~~~sls~SPn-------gD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 600 IRTWDLPTG-TLIDGL-LVDSPCTSLSFSPN-------GDFLATVHVDQNGIYLW 645 (910)
T ss_pred EEEEeccCc-ceeeeE-ecCCcceeeEECCC-------CCEEEEEEecCceEEEE
Confidence 999999998 332222 23567788999998 559999998865 899
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=152.24 Aligned_cols=304 Identities=15% Similarity=0.187 Sum_probs=204.2
Q ss_pred CCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce------
Q 014644 55 NDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH------ 126 (421)
Q Consensus 55 ~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------ 126 (421)
.|+.|.+-+++.+. +....-.++.++|+.++..|.+.++++..++..... .......+|.+.....
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s------~vl~~aaiw~ipe~~~~S~~~t 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDS------GVLTGAAIWQIPEPLGQSNSST 111 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCC------cceeeEEEEecccccCccccch
Confidence 46778877766544 444455677888998888888888887665422111 0011456787765432
Q ss_pred eeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEE
Q 014644 127 ARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA 204 (421)
Q Consensus 127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~ 204 (421)
.+++..+...+-+.|.|+.|.|++..|++-.|..|.+|++......+..+ +...-.++....++-+|+| ++ +.++
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev--~ss~s~e~~~~ftsg~WspHHdg-nqv~ 188 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEV--LSSESAEMRHSFTSGAWSPHHDG-NQVA 188 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheee--cccccccccceecccccCCCCcc-ceEE
Confidence 35555664466679999999999999998889999999998554433332 1112234566788889999 44 5565
Q ss_pred EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcce
Q 014644 205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPV 282 (421)
Q Consensus 205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~ 282 (421)
+ ..|++++.||+|+.... ..+-+ .|...|..+.|+|+.+++ ++++| |.|+|||.++...++
T Consensus 189 t-t~d~tl~~~D~RT~~~~---~sI~d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 189 T-TSDSTLQFWDLRTMKKN---NSIED-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred E-eCCCcEEEEEccchhhh---cchhh-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 4 56899999999986432 12222 346789999999997755 56666 999999999888999
Q ss_pred eEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc
Q 014644 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 361 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (421)
+.+.+|..++ +++.|+|. .++|++|+.|..|.+|....-..+.+....+...-....-+..
T Consensus 252 ~el~~HsHWv---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee--- 313 (370)
T KOG1007|consen 252 QELPGHSHWV---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE--- 313 (370)
T ss_pred cccCCCceEE---------------EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH---
Confidence 9999999976 89999995 6788999999999999877643222221111111000000000
Q ss_pred cccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccCCCe-EEEec-CCceEE
Q 014644 362 RRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNL-IACAN-GNSLFF 418 (421)
Q Consensus 362 ~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~-la~~~-~~~~~i 418 (421)
+.= -.++.+.....|+..|.+++||.-.++ +|+-+ ++++.|
T Consensus 314 ----------------r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 314 ----------------RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ----------------hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 100 112345566688999999999988877 55666 555554
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=2.1e-20 Score=160.44 Aligned_cols=260 Identities=15% Similarity=0.206 Sum_probs=180.2
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccc-eeeccCCCCceeee
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGY 106 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~ 106 (421)
-|.++|++++|.|..+-+++|+|..-|+|-+||+.+.+ -.......|..+|.++.|++.+.. +++.+.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy-------- 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY-------- 255 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc--------
Confidence 36789999999766666899999999999999995332 222333445566777777665432 334333
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
++++++-|++.....+.. .+ ......+.++.|+.+...++.+ .=|...+||.++.+..+.. +.-
T Consensus 256 ------DGtiR~~D~~~~i~e~v~-s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~l 320 (498)
T KOG4328|consen 256 ------DGTIRLQDFEGNISEEVL-SL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRL 320 (498)
T ss_pred ------CceeeeeeecchhhHHHh-hc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhh
Confidence 667788887765222221 11 2244557788888887777777 6669999999977665543 366
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
|...|.+++++|..+.+|++++.|++++|||+|.-.....+ .+. ...|...|.+..|||.+-.|++.
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp--~ls-----------t~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP--FLS-----------TLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc--cee-----------cccccceeeeeEEcCCCCceEee
Confidence 88899999999999899999999999999999975432210 111 23458899999999987777776
Q ss_pred cC-CeEEEEECC---CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 266 DY-MNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 266 ~~-~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+. ..|+|||.. ..-.+..++. |.....+. ...+...|.|+..++++|-.-..|-|+|-..+
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rw---------lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRW---------LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred ccCCceEEeecccccccCCccceee-ccCccccc---------ccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 54 999999983 1133333332 22211100 01146799999999999999999999996655
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-20 Score=158.83 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=171.4
Q ss_pred CCceeeeecccccccceeEEeecccceeeeeeee-----------------cCCCCcceEEEeecCC-CCEEEEE-cCCc
Q 014644 100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-----------------PHAHDFNINSISNNSD-CETFVSA-DDLR 160 (421)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~~~-~~~l~s~-~d~~ 160 (421)
..+.+.+-|.+ +..|.|||+.......+.-++ ..+|+..|.+|+|+.. ...||+| .|.+
T Consensus 190 ~~gNyvAiGtm--dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTM--DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CCcceEEEecc--CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 34567788877 348999998764332332222 1369999999999875 4567777 9999
Q ss_pred EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc
Q 014644 161 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 240 (421)
Q Consensus 161 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~ 240 (421)
|++||+. .+++..++ .-|...|.++.|+|..+..|++|+.|++|++.|.|..... ...|..
T Consensus 268 V~lWD~~-~g~p~~s~-------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~wk~-------- 328 (463)
T KOG0270|consen 268 VKLWDVD-TGKPKSSI-------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEWKF-------- 328 (463)
T ss_pred EEEEEcC-CCCcceeh-------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceEEe--------
Confidence 9999999 66776654 6789999999999999899999999999999999963211 244554
Q ss_pred ccccccccceeEEEEcCCCCE-EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CC
Q 014644 241 SFFTEIIASISDIKFANDGQH-LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GL 317 (421)
Q Consensus 241 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~ 317 (421)
.+.|..++|.|.... ++++++ |+++-+|+|..++++.+++.|...+ .++++++. ..
T Consensus 329 ------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I---------------Sgl~~n~~~p~ 387 (463)
T KOG0270|consen 329 ------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI---------------SGLSVNIQTPG 387 (463)
T ss_pred ------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc---------------ceEEecCCCCc
Confidence 578999999997654 445555 9999999999889999999999976 68888875 55
Q ss_pred EEEEeeCCCeEEEEecCCCCCceeEEecCC---CCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 318 HFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 318 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
++++++.|+.|++|++....... ...|. +...+.++.|+.+ ..|+.|+..+. ++|
T Consensus 388 ~l~t~s~d~~Vklw~~~~~~~~~--v~~~~~~~~rl~c~~~~~~~a------~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDVDSPKS--VKEHSFKLGRLHCFALDPDVA------FTLAFGGEKAVLRVW 446 (463)
T ss_pred ceeeccccceEEEEeecCCCCcc--cccccccccceeecccCCCcc------eEEEecCccceEEEe
Confidence 78899999999999998653211 11111 1123344444422 36788888887 999
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.4e-21 Score=169.18 Aligned_cols=264 Identities=17% Similarity=0.214 Sum_probs=185.8
Q ss_pred cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
...+.|...|-.++| -|...+|++++.|.++++||+.+..+...
T Consensus 94 k~~~aH~nAifDl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~---------------------------------- 137 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKW--APGESLLVSASGDSTIRPWDVKTSRLVGG---------------------------------- 137 (720)
T ss_pred cccccccceeEeecc--CCCceeEEEccCCceeeeeeeccceeecc----------------------------------
Confidence 445689999999999 56778999999999999999988652211
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCcee------eeee--
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC------FNIV-- 176 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~------~~~~-- 176 (421)
+.+ .||...|.+++|.|... .+++| .||.|.|||++-+... .++.
T Consensus 138 ------------------------~~~-~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 138 ------------------------RLN-LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred ------------------------eee-cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 123 69999999999999655 55667 9999999998743300 0000
Q ss_pred ------ecCC-----CCCCccCCCeeE---EEEecCCCCeEEEEEc-CCeEEEEECCcccccccchhhhccccccCCCcc
Q 014644 177 ------DMKP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKS 241 (421)
Q Consensus 177 ------~~~~-----~~~~~~~~~v~~---~~~~p~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~ 241 (421)
..++ .....+...|.+ +.+..|+ ..||+++. |+.|++||++..... +.. .+....
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~------~r~---ep~~~~ 262 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTA------YRQ---EPRGSD 262 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccc------ccc---CCCccc
Confidence 0000 112334455555 5666777 88998887 999999999986432 111 111111
Q ss_pred ccccc---ccceeEEEEcCCCCEEEE-ecCCeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC
Q 014644 242 FFTEI---IASISDIKFANDGQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 316 (421)
Q Consensus 242 ~~~~~---~~~v~~~~~s~~~~~l~~-~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 316 (421)
.+..| .-.+.++.....|.+|++ +.|+.|++|++...+ .++..+.++... .++ ..-..+|++
T Consensus 263 ~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~ 329 (720)
T KOG0321|consen 263 KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDD 329 (720)
T ss_pred CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCC
Confidence 11112 335667777777787765 567999999997532 344444443321 111 344678999
Q ss_pred CEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 317 LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 317 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.+|++|+.|...++|.+.+.+.....+.+|.-.|..+.|.|..... +++.++|.. ++|
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~------v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP------VATCSDDFRVKIW 388 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC------ceeeccCcceEEE
Confidence 9999999999999999999877888999999999999999986544 566688888 999
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.8e-20 Score=150.30 Aligned_cols=244 Identities=12% Similarity=0.083 Sum_probs=181.8
Q ss_pred cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
+-...+.|+.++.+++| .+...+++|+.||.|+++|+.+++...
T Consensus 46 ~l~~~~~~~~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~--------------------------------- 89 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQ--------------------------------- 89 (323)
T ss_pred hhhhheecCCceeeeec---cCCceEEEeccCceEEEEEecCCccee---------------------------------
Confidence 44556789999999999 567889999999999999999865211
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
+ ..|...|+|+..++....+++| .|++|++||.+ .......+
T Consensus 90 ----------------------------i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~------- 132 (323)
T KOG1036|consen 90 ----------------------------I-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTF------- 132 (323)
T ss_pred ----------------------------e-ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccccccc-------
Confidence 1 5789999999999987788888 99999999998 33333222
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
.....|.++..+ + +.|+.|+.|..+.+||+++..... +.-+ ...+-.+.++++-|++.-.+
T Consensus 133 -d~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~---q~re------------S~lkyqtR~v~~~pn~eGy~ 193 (323)
T KOG1036|consen 133 -DQGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPF---QRRE------------SSLKYQTRCVALVPNGEGYV 193 (323)
T ss_pred -ccCceEEEEecc--C-CEEEEeecCceEEEEEcccccchh---hhcc------------ccceeEEEEEEEecCCCceE
Confidence 123478887765 4 678899999999999999865321 1000 01144789999999877666
Q ss_pred Eec-CCeEEEEECCCC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 264 SRD-YMNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 264 ~~~-~~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
.++ +|.|.+=.++.. ...-..|+.|.... ...+-++.|.+++|+|-.+.++||+.||.|.+||+.+. +.
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Kr 266 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KR 266 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hh
Confidence 665 588877666542 13344567776542 34456678899999999999999999999999999987 56
Q ss_pred eeEEecCCCCccceeeecCCcccccccceeeeecc
Q 014644 340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY 374 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 374 (421)
...+......|.+++|+.+ +..||.++.
T Consensus 267 l~q~~~~~~SI~slsfs~d-------G~~LAia~s 294 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSMD-------GSLLAIASS 294 (323)
T ss_pred hhhccCCCCceEEEEeccC-------CCeEEEEec
Confidence 6667777778899999988 447887764
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1.9e-21 Score=168.65 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=184.9
Q ss_pred CCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCcee--eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 136 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
.|.+-|-++..+...+.+.+|..|.|+|||+...+.. +..+ ......+.|+++.+.||| +.|++|+.-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL-----dcl~rdnyiRSckL~pdg-rtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL-----DCLNRDNYIRSCKLLPDG-RTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccc-----cccCcccceeeeEecCCC-ceEEeccccceee
Confidence 6888888999999999999999999999999743322 2221 123345789999999999 8999999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
|||+.......+ .. ++.....+.+++.+||.+..+++ ++|.|.|||+++ ...+..|++|....
T Consensus 491 iWDLAapTprik-----ae----------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 491 IWDLAAPTPRIK-----AE----------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGA 554 (705)
T ss_pred eeeccCCCcchh-----hh----------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCc
Confidence 999987653211 00 11113467889999999988876 569999999996 88999999999866
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--CCCccceeeecCCcccccccceee
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLSNLT 370 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 370 (421)
.++.+++||..|-+|+-|++||-||++++.+ ++.| .+.|.++..+|. ...|+
T Consensus 555 ---------------scIdis~dGtklWTGGlDntvRcWDlregrq----lqqhdF~SQIfSLg~cP~-------~dWla 608 (705)
T KOG0639|consen 555 ---------------SCIDISKDGTKLWTGGLDNTVRCWDLREGRQ----LQQHDFSSQIFSLGYCPT-------GDWLA 608 (705)
T ss_pred ---------------eeEEecCCCceeecCCCccceeehhhhhhhh----hhhhhhhhhheecccCCC-------cccee
Confidence 7899999999999999999999999998733 2233 355677777777 45899
Q ss_pred eecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 371 RGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 371 ~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.|-.++. .+- ..+.....+..|+..|.++.|.+.|+++++.+ +|-+-.|.
T Consensus 609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence 9988877 555 45555666678899999999999999999988 44465653
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=161.05 Aligned_cols=245 Identities=16% Similarity=0.171 Sum_probs=184.3
Q ss_pred CCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644 135 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 211 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~ 211 (421)
+-+.++|++++|+|.. +++++| ..|.|-+||+.+.++....+ ..+..|..+|.++.|+|.....+++.|.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5678999999999965 467778 89999999995222211111 1237899999999999988789999999999
Q ss_pred EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccC
Q 014644 212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
|++-|+...... .++.. .........+.|+.+...++.++. |...+||+++.+.....+..|..
T Consensus 259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 999999875421 11211 111456788899998888888887 99999999997777777878877
Q ss_pred cccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCc---eeEEecCCCCccceeeecCCccccccc
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL 366 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
.+ .+++++|. ..+|++++.|++.+|||++.-... ....-.|.-.|.+..|+|. .
T Consensus 324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-------~ 381 (498)
T KOG4328|consen 324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-------G 381 (498)
T ss_pred cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-------C
Confidence 54 79999995 567899999999999999875332 2455689999999999999 3
Q ss_pred ceeeeecccCc-ccCCCC-----Cccccccccc----c--CeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 367 SNLTRGLYRQA-HENSSS-----GHHELSYNLS----S--KLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 367 ~~l~~g~~d~~-~iw~~~-----~~~~~~~~~~----~--~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
..|++.+.|.. +||+.. ......+.|. . ......|.|+.+++++|. ...|-||+
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 36899998888 999442 1222222332 2 234679999999999998 45576665
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.1e-21 Score=184.13 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=193.0
Q ss_pred cccccccccEEEEEEEEcCCC--CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 27 LKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~--~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
..++.-..+-+.++|++..++ .++|.|..||.|.+||...-. .. ..
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----~~--~~-------------------------- 105 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----AN--AS-------------------------- 105 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhc----cC--cc--------------------------
Confidence 334445667899999644333 259999999999999976520 00 00
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
...+..+ ..|++.|..+.|++.+. +||+| +||.|.|||++........-
T Consensus 106 ----------------------~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------ 156 (1049)
T KOG0307|consen 106 ----------------------EEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------ 156 (1049)
T ss_pred ----------------------hHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------
Confidence 0333444 78999999999999655 89999 99999999998433333210
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-E
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H 261 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 261 (421)
-....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+.+ +..| .....+..++|+|++- .
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~----ls~~-----------~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK----LSDT-----------PGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc----cccC-----------CCccceeeeeeCCCCcee
Confidence 1224578999999988768899999999999999998754311 1110 0024578999999854 3
Q ss_pred EEE--ecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCC
Q 014644 262 LLS--RDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 262 l~~--~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~ 336 (421)
|++ .++ -.|.+||+|....+++.+++|+..+ .++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 333 344 7899999998888999999999865 899999965 88999999999999999997
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
+.+..+....+++..+.|+|..++ .++..+-+|. .|+
T Consensus 287 -Evl~~~p~~~nW~fdv~w~pr~P~------~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 287 -EVLGELPAQGNWCFDVQWCPRNPS------VMAAASFDGKISIY 324 (1049)
T ss_pred -eEeeecCCCCcceeeeeecCCCcc------hhhhheeccceeee
Confidence 677778888899999999998654 5888999999 888
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-20 Score=158.91 Aligned_cols=264 Identities=16% Similarity=0.136 Sum_probs=192.7
Q ss_pred cEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCc--eeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 35 KINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 35 ~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
.+.+++|. .... ..++.+.|+.+++|.-... ++......... .-.|++......++..|+.
T Consensus 36 g~~s~~w~--~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-------------~~~Cv~~~s~S~y~~sgG~- 99 (673)
T KOG4378|consen 36 GDFSFNWQ--RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-------------NAFCVACASQSLYEISGGQ- 99 (673)
T ss_pred cceeeecc--ccceEEEeecCCceeEEEecccCCCCccceeeccccc-------------hHHHHhhhhcceeeeccCc-
Confidence 48999993 3322 2334467889999985443 22222111111 1223333333455666554
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
..+++|||+... .+.+.+ .+|...|+++.++....+||++ ..|-|.|..+.+ ++.-..+. .+....|
T Consensus 100 -~~~Vkiwdl~~k---l~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~------~~sgqsv 167 (673)
T KOG4378|consen 100 -SGCVKIWDLRAK---LIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFT------IDSGQSV 167 (673)
T ss_pred -CceeeehhhHHH---HHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Ccccccee------cCCCCeE
Confidence 668999999865 667777 9999999999999999999999 899999999984 33332221 2223456
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-Eec-CC
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YM 268 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~~ 268 (421)
+-+.|+|....+|.+++.+|.|.+||+...... ... ...|..+...|+|+|..+.|+ +-+ |.
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~-------------~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHA-------------SEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcc---cch-------------hhhccCCcCcceecCCccceEEEecccc
Confidence 789999998677888999999999999876533 112 234588999999999766555 434 59
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
.|.+||.+. ......+...... ..++|+++|.+|+.|+..|.|+.||++.....+.++.+|..
T Consensus 232 ki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 232 KINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred eEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 999999985 6656555544332 58999999999999999999999999998888999999999
Q ss_pred CccceeeecCC
Q 014644 349 ENRKPILQAAP 359 (421)
Q Consensus 349 ~~~~~~~~~~~ 359 (421)
.|.+++|.+..
T Consensus 295 sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 SVTRVAFQPSP 305 (673)
T ss_pred ceeEEEeeecc
Confidence 99999999873
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.4e-20 Score=155.70 Aligned_cols=234 Identities=15% Similarity=0.210 Sum_probs=169.2
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
-||+.+|..++|+| .+...+|+||.|.+|+||++..+.+..-..
T Consensus 78 ~GHt~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~lt----------------------------------- 121 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLT----------------------------------- 121 (472)
T ss_pred cCccccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcc-----------------------------------
Confidence 48999999999986 467899999999999999998765221111
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
+++..+ .+|...|--++|+|. .+.|+++ .|.+|.+||+.++...+.+ . |.
T Consensus 122 ------------------epvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--------~-hp 173 (472)
T KOG0303|consen 122 ------------------EPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--------D-HP 173 (472)
T ss_pred ------------------cceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--------C-CC
Confidence 555666 899999999999996 4566676 9999999999965555532 3 99
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-- 265 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-- 265 (421)
+.|+++.|+.+| .+|++++.|+.|||||.+.+....+. ..| . ......+.|-.+|..+.+|
T Consensus 174 d~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~h----------e--G~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 174 DMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VAH----------E--GAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred CeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----ccc----------c--CCCcceeEEeccCceeeeccc
Confidence 999999999999 99999999999999999998765221 222 0 1234566687888865565
Q ss_pred --cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCCceeE
Q 014644 266 --DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGIT 342 (421)
Q Consensus 266 --~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~~~~~ 342 (421)
++.++-+||...-.+++.......+. +|.=--|.||...++ +|-.|+.||.|.+.....-...
T Consensus 237 r~seRq~aLwdp~nl~eP~~~~elDtSn--------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEPIALQELDTSN--------------GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred cccccceeccCcccccCcceeEEeccCC--------------ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 33889999987655554444333332 112345678877765 5557999999999887544444
Q ss_pred Eec--CCCCccceeeecC
Q 014644 343 VEA--GKNENRKPILQAA 358 (421)
Q Consensus 343 ~~~--~~~~~~~~~~~~~ 358 (421)
+.. ...+-+.+.+.|.
T Consensus 303 ln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 303 LNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecccccCCcccccccccc
Confidence 443 2344556666655
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1.8e-18 Score=154.24 Aligned_cols=268 Identities=11% Similarity=0.100 Sum_probs=168.1
Q ss_pred ccccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 28 KSLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 28 ~~~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
..+.+...+.++.| ++++..+ ++++.++.|++||..+++...... ....+. ...++++...+.
T Consensus 25 ~~~~~~~~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~------------~~~~~~~g~~l~ 88 (300)
T TIGR03866 25 RTFPVGQRPRGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGPDPE------------LFALHPNGKILY 88 (300)
T ss_pred EEEECCCCCCceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CCCCcc------------EEEECCCCCEEE
Confidence 33444445778999 7888866 567789999999998876432211 111111 223334443332
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCC-cEEEEeCCCCceeeeeeecCCCCCC
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMD 184 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~ 184 (421)
.... .+..+.+|++.+. +.+..+ . +...+.+++|+|++++++++ .++ .+.+||.+ ........ .
T Consensus 89 ~~~~-~~~~l~~~d~~~~---~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~ 154 (300)
T TIGR03866 89 IANE-DDNLVTVIDIETR---KVLAEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L 154 (300)
T ss_pred EEcC-CCCeEEEEECCCC---eEEeEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E
Confidence 2211 1347899998875 555555 2 23346889999999999988 554 57788987 34443322 1
Q ss_pred ccCCCeeEEEEecCCCCeEE-EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644 185 DLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (421)
....+.+++|+|++ +.|+ ++..++.|++||+.+++.. ..+..+. +.. .........++|+|++++++
T Consensus 155 -~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~--~~~----~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 155 -VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEI--PGV----HPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred -cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecc--ccc----ccccCCccceEECCCCCEEE
Confidence 12345778999999 7665 4456999999999987543 2111100 000 00011345688999999865
Q ss_pred Ee-c-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCce
Q 014644 264 SR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGG 340 (421)
Q Consensus 264 ~~-~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~ 340 (421)
.+ . ++.+.+||+++ ++.+..+.... .+ .+++|+|+|++|+++ ..+|.|++||++++ ...
T Consensus 223 ~~~~~~~~i~v~d~~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~ 284 (300)
T TIGR03866 223 VALGPANRVAVVDAKT-YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVI 284 (300)
T ss_pred EEcCCCCeEEEEECCC-CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEE
Confidence 54 3 37899999985 66655443222 22 689999999999876 46899999999987 555
Q ss_pred eEEecCCCCccceeee
Q 014644 341 ITVEAGKNENRKPILQ 356 (421)
Q Consensus 341 ~~~~~~~~~~~~~~~~ 356 (421)
..++....+ ..++++
T Consensus 285 ~~~~~~~~~-~~~~~~ 299 (300)
T TIGR03866 285 KSIKVGRLP-WGVVVR 299 (300)
T ss_pred EEEEccccc-ceeEeC
Confidence 555544333 555544
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-19 Score=166.55 Aligned_cols=236 Identities=17% Similarity=0.154 Sum_probs=183.5
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
..|....+.++|.|+|++|.++ .||.|++|+.......-.++ ..+...|.+++... ..|++++.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------~~~g~~v~~ia~~s---~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------DISGELVSSIACYS---NHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------hccCceeEEEeecc---cceEEeeccceEE
Confidence 4799999999999999999999 99999999987442333332 33667778776553 5799999999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
+|.+..+... .++.. ..-+++.++++-+|+++|.|++ -.|++-++.. ......+++|..++
T Consensus 80 ~y~fps~~~~----~iL~R-------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 80 RYKFPSGEED----TILAR-------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPV 141 (933)
T ss_pred EeeCCCCCcc----ceeee-------------eeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCce
Confidence 9999887632 12221 1458999999999999999987 8899999975 77788899999876
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--------CCCccceeeecCCccccc
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--------KNENRKPILQAAPRARRS 364 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 364 (421)
.++.|+|++.+||+.+-||.|++||++++ .+..++.+- ...+..++|+|.
T Consensus 142 ---------------l~l~~~p~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------ 199 (933)
T KOG1274|consen 142 ---------------LQLSYDPKGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPK------ 199 (933)
T ss_pred ---------------eeeeEcCCCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCC------
Confidence 89999999999999999999999999986 433333321 345677889988
Q ss_pred ccceeeeecccCc-ccC--CCCCcccccc--ccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 365 SLSNLTRGLYRQA-HEN--SSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 365 ~~~~l~~g~~d~~-~iw--~~~~~~~~~~--~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
+..|+....|+. +++ ...+.+..+. .+...+.+++|+|.|.+||+++ ++.|.|||.
T Consensus 200 -~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 200 -GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred -CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 336777777777 888 3334444443 2344499999999999999999 777999984
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9e-20 Score=156.07 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=174.0
Q ss_pred CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC-------------CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644 149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMK-------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 214 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i 214 (421)
.|+++|.| .|..|.|||+.........+.+. .....+|+..|.+++|+..-.+.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 37899999 99999999987433322222111 12235799999999999887789999999999999
Q ss_pred EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
||+.+++.. .++.. |...|.++.|+|. ..+|++|+. +++.+.|.|..+..-..++.....
T Consensus 271 WD~~~g~p~----~s~~~-------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V- 332 (463)
T KOG0270|consen 271 WDVDTGKPK----SSITH-------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV- 332 (463)
T ss_pred EEcCCCCcc----eehhh-------------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce-
Confidence 999998754 44444 3789999999995 668888986 999999998534444444433332
Q ss_pred cccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
-.++|.|.. ..++++..||+++-+|++..+....++++|.++|..+.+....++ +|++
T Consensus 333 ---------------Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~------~l~t 391 (463)
T KOG0270|consen 333 ---------------EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG------LLST 391 (463)
T ss_pred ---------------EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc------ceee
Confidence 578999964 456788899999999999988899999999999999999887554 5899
Q ss_pred ecccCc-ccCCCCCc---ccccccc-ccCeEEEEEccCCCe-EEEecC-CceEEEeC
Q 014644 372 GLYRQA-HENSSSGH---HELSYNL-SSKLLHLAWHPTTNL-IACANG-NSLFFHYA 421 (421)
Q Consensus 372 g~~d~~-~iw~~~~~---~~~~~~~-~~~v~~~~~spd~~~-la~~~~-~~~~i~~~ 421 (421)
++.++. ++|+.... ......+ -+...++++.|+-.. ||.|+. ..+++|+.
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 999999 99933221 1111122 123567788888655 666664 45999973
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=146.64 Aligned_cols=260 Identities=16% Similarity=0.240 Sum_probs=183.8
Q ss_pred cccccccccEEEEEEEEcCCC---CeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCC
Q 014644 27 LKSLEIEEKINRVRWCAAPNG---SMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 101 (421)
Q Consensus 27 ~~~~~h~~~V~~v~~~~~~~~---~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 101 (421)
..++.|.-+++.+.|.|++.| .+|||++. .+|||.+...+ ........
T Consensus 90 ~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~------------------------- 142 (364)
T KOG0290|consen 90 DANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLN------------------------- 142 (364)
T ss_pred cCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhc-------------------------
Confidence 334688899999999766543 34555543 79999988533 11110000
Q ss_pred ceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCC-ceeeeeeec
Q 014644 102 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEIS-DQCFNIVDM 178 (421)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~ 178 (421)
.+ . ...+..++++..|+. +-++|.++ -|-+..|||++++ ...+++
T Consensus 143 --------------------------~~--k-ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT--- 190 (364)
T KOG0290|consen 143 --------------------------NN--K-NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT--- 190 (364)
T ss_pred --------------------------cC--c-ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee---
Confidence 00 0 146778899999987 66777787 8999999999943 111222
Q ss_pred CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644 179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (421)
.+-.|...|..++|...+...+++.+.||.||+||+|...- ..-+++. +. ...+...++|++.
T Consensus 191 ---QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~----p~-------~~~pLlRLswnkq 253 (364)
T KOG0290|consen 191 ---QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYED----PS-------PSTPLLRLSWNKQ 253 (364)
T ss_pred ---EEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecC----CC-------CCCcceeeccCcC
Confidence 34679999999999998878999999999999999998431 1112222 11 1357788999985
Q ss_pred -CCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecC
Q 014644 259 -GQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 259 -~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~ 334 (421)
-+++|+- .+ ..|.|.|++.+..++.++++|+..+ ..++|.|. ...|+++++|..+-|||+.
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccc---------------cceEecCCCCceeeecCCcceEEEEecc
Confidence 4566653 44 8899999999899999999999976 89999995 6789999999999999998
Q ss_pred CCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccC-CCeEEEecC
Q 014644 335 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANG 413 (421)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~~~ 413 (421)
.-.. ....++ -+++. -...|..+.|+|. +.+|+++..
T Consensus 319 q~~~-----~~~~dP--ilay~-----------------------------------a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 319 QMPR-----ENGEDP--ILAYT-----------------------------------AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccc-----cCCCCc--hhhhh-----------------------------------ccceeeeeeecccCCCEEEEEec
Confidence 6511 000011 11111 1467999999965 678999998
Q ss_pred CceEEE
Q 014644 414 NSLFFH 419 (421)
Q Consensus 414 ~~~~i~ 419 (421)
+.+.|.
T Consensus 357 kkleiL 362 (364)
T KOG0290|consen 357 KKLEIL 362 (364)
T ss_pred CeeeEE
Confidence 887664
No 158
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=152.40 Aligned_cols=300 Identities=14% Similarity=0.057 Sum_probs=205.9
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce----eEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 105 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (421)
++|.+-|+++.| +.++++|++|+.|..++||.++..- .+++....++- ...|+|+.++...+++
T Consensus 53 ~~H~GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----------~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 53 REHTGCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----------RSNIFSLEFDLENRFL 120 (609)
T ss_pred hhhccccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc----------ccceEEEEEccCCeeE
Confidence 589999999999 5679999999999999999986532 23333322221 2356666666666777
Q ss_pred eecccccccceeEEeecccceeeeeeeecCCCC---cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC
Q 014644 106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 181 (421)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~ 181 (421)
.+|.. .+++.+-|+++. +.+.++ .|. +.|..+..+|..+.|++. .++.|.+||.+........+
T Consensus 121 ~SG~~--~~~VI~HDiEt~---qsi~V~--~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~----- 188 (609)
T KOG4227|consen 121 YSGER--WGTVIKHDIETK---QSIYVA--NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV----- 188 (609)
T ss_pred ecCCC--cceeEeeecccc---eeeeee--cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----
Confidence 76655 456777788776 556555 444 489999999988888887 99999999998433233222
Q ss_pred CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
-+........++.|+|..+.+|++++..+-+-+||.+..+.. +..... ..-+......-.++.|+|+|..
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSM-------FKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhc-------cccCcccchhhhheeeCCCCCe
Confidence 113345667889999999899999999999999999976422 111111 0001111233467889999998
Q ss_pred EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC----
Q 014644 262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---- 336 (421)
Q Consensus 262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~---- 336 (421)
+++-.. ..-.+||+.+...++..+. |... .|.|.+ .+-+++|.-|- .+++|+.+=.|++|.+...
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~------GY~N~~--T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSD-HNPN------GYCNIK--TIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEecc-CCCC------cceeee--eeeeeeeecce-eeeccCcccceEEEecCCCcccc
Confidence 887644 4456788875333343333 2211 111111 12578887554 4899999999999998642
Q ss_pred ------------------CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 337 ------------------SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 337 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
.....+|.+|.+-++.+.|++. ..+|++.+-... +||
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H-------~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH-------NNLLVSSGVENSFKLW 384 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCC-------cceEeccchhhheecc
Confidence 1235678999999999999998 458888888888 999
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=156.07 Aligned_cols=237 Identities=13% Similarity=0.134 Sum_probs=175.2
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
.+.|+++.|+|..+.|+++ .|++++||.++ +..-..+ ..+.-...+|.+.+|.|+|...+++++....++.||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~l-----qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKL-----QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEec-CccChhh-----eeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 4679999999999999998 99999999998 3211111 122334578999999999943899999999999999
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 295 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 295 (421)
+.+.+... ++...++ ....+.....+|++++|+..+. |.|.+....+ ++.+..++.....
T Consensus 287 le~ak~~k--~~~~~g~------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~KieG~v---- 347 (514)
T KOG2055|consen 287 LETAKVTK--LKPPYGV------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFKIEGVV---- 347 (514)
T ss_pred cccccccc--ccCCCCc------------ccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheeeeccEE----
Confidence 98876431 1222221 0346778899999999998776 9999999987 8888888765533
Q ss_pred ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeeccc
Q 014644 296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d 375 (421)
.+++|+.+++.|++.+.+|.|++||++.. .....+. ..+.+....++++..+. +||+|++.
T Consensus 348 ------------~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~-D~G~v~gts~~~S~ng~-----ylA~GS~~ 408 (514)
T KOG2055|consen 348 ------------SDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFV-DDGSVHGTSLCISLNGS-----YLATGSDS 408 (514)
T ss_pred ------------eeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEe-ecCccceeeeeecCCCc-----eEEeccCc
Confidence 68999999999999999999999999976 3333332 23344444444443344 99999999
Q ss_pred Cc-ccCCCC--------CccccccccccCeEEEEEccCCCeEEEec---CCceEE
Q 014644 376 QA-HENSSS--------GHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFF 418 (421)
Q Consensus 376 ~~-~iw~~~--------~~~~~~~~~~~~v~~~~~spd~~~la~~~---~~~~~i 418 (421)
|. .|++.. .++...-.....|++++|+||.++||.++ .+.+++
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 99 999422 23344445678999999999999999988 344543
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.9e-20 Score=154.50 Aligned_cols=226 Identities=15% Similarity=0.232 Sum_probs=154.3
Q ss_pred ceeeeccccccCCCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccc
Q 014644 10 EYRYKTEFQSHEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 88 (421)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~ 88 (421)
++.--.+...+..++..+.++ +|...=.+++|+|.. ...|++|..-+.|++|...++.-+
T Consensus 187 ~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~-~g~LlsGDc~~~I~lw~~~~g~W~------------------ 247 (440)
T KOG0302|consen 187 NALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK-TGRLLSGDCVKGIHLWEPSTGSWK------------------ 247 (440)
T ss_pred hhhcCccccccccccCceEEecccCccceeeeccccc-ccccccCccccceEeeeeccCcee------------------
Confidence 333334444555566655554 688888999996532 445789988899999998876511
Q ss_pred cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeC
Q 014644 89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNL 166 (421)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~ 166 (421)
++. +-+ .+|+..|..|+|||.. ..|++| .|++|+|||+
T Consensus 248 --------------------------------vd~-------~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 248 --------------------------------VDQ-------RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred --------------------------------ecC-------ccc-cccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 111 123 6799999999999964 466677 9999999999
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 246 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 246 (421)
+...+.-.+. .+.|.+.|..+.|+... .+|++|+.||+++|||+|+-+.. +.+.. |+-|
T Consensus 288 Rs~~~~~~~~------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~-------------fk~H 346 (440)
T KOG0302|consen 288 RSGPKKAAVS------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVAT-------------FKYH 346 (440)
T ss_pred cCCCccceeE------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-Cccee-------------EEec
Confidence 9443322222 26799999999999998 69999999999999999985432 22233 4456
Q ss_pred ccceeEEEEcCCCC-EE-EEecCCeEEEEECCCCCc---------------ceeEEeeccCcccccccccCCCcceeeeE
Q 014644 247 IASISDIKFANDGQ-HL-LSRDYMNLKLWDIRMDST---------------PVATFKIHEHLRPKLCDLYNNDSIFDKFE 309 (421)
Q Consensus 247 ~~~v~~~~~s~~~~-~l-~~~~~~~i~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+|+++.|+|... .| ++|.|.+|.|||+..+.. +-+.+-.|.+. . .+-.
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ----------k---e~Ke 413 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ----------K---EVKE 413 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch----------h---Hhhh
Confidence 99999999999543 33 345569999999964221 01112222211 1 1247
Q ss_pred EEEcCC-CCEEEEeeCCCeE
Q 014644 310 CSVSGD-GLHFATGSYSNLL 328 (421)
Q Consensus 310 ~~~sp~-~~~l~~~s~dg~i 328 (421)
+.|+++ ..+|++.+.||.-
T Consensus 414 vhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 414 VHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred heeccCCCCeEEEeccccee
Confidence 899986 4577787777743
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=2.1e-19 Score=161.26 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=194.8
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.|+.++| .|||..|+.+..| .+.+||..+|.
T Consensus 14 ci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~---------------------------------------------- 44 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSDGT---------------------------------------------- 44 (1081)
T ss_pred chheeEE--CCCCceEEEecCC-EEEEEeCCCcc----------------------------------------------
Confidence 6899999 7999888877754 78999988864
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 193 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (421)
.++++ ++|.+.|++++|+.||+.+++| .|..|.+|+.. -+..++ ..|.+.|.|+
T Consensus 45 --------------llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk---------YSH~D~IQCM 99 (1081)
T KOG1538|consen 45 --------------LLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK---------YSHNDAIQCM 99 (1081)
T ss_pred --------------ccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee---------eccCCeeeEe
Confidence 22344 8999999999999999999999 99999999987 344443 5799999999
Q ss_pred EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEE
Q 014644 194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 272 (421)
Q Consensus 194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i 272 (421)
.|+|-. +.|++++... .-+|........ .... ...+.+++|..||++++.|-. |+|.|
T Consensus 100 sFNP~~-h~LasCsLsd-FglWS~~qK~V~-----K~ks--------------s~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 100 SFNPIT-HQLASCSLSD-FGLWSPEQKSVS-----KHKS--------------SSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ecCchH-HHhhhcchhh-ccccChhhhhHH-----hhhh--------------heeEEEeeecCCCcEEEEeccCceEEe
Confidence 999998 8899887553 568887664422 1111 357899999999999999965 99999
Q ss_pred EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-----CEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
-+-. +++.-.+..+.+. |..| ++++|+|.. ..+++.....++.++.+... .+..-..-.
T Consensus 159 RNk~--gEek~~I~Rpgg~---------Nspi---wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~ 222 (1081)
T KOG1538|consen 159 RNKN--GEEKVKIERPGGS---------NSPI---WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALN 222 (1081)
T ss_pred ecCC--CCcceEEeCCCCC---------CCCc---eEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCC
Confidence 8753 5554445443332 1222 799999963 46777777888888877632 111001111
Q ss_pred CCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
-.--++.+.++ +.++..|+.|+. ++++ .+-.+.+...+..+|+.++.+|+++.++.|+ ++.|--||
T Consensus 223 FdP~CisYf~N-------GEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 223 FDPCCISYFTN-------GEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCchhheeccC-------CcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 11124455555 448999999999 9994 4445666667889999999999999999999 45455443
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-19 Score=155.94 Aligned_cols=285 Identities=13% Similarity=0.117 Sum_probs=195.2
Q ss_pred CCCcEEEeecCCceeEE-eeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccccee-eeeee
Q 014644 55 NDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-RCQKV 132 (421)
Q Consensus 55 ~d~~v~lwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 132 (421)
.-.+++|||+...+... .........+.++.|. ... ++...+...+..+++|.-...... ..++.
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~------------~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ------------RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeecc------------ccc-eEEEeecCCceeEEEecccCCCCccceeec
Confidence 33479999988765322 1111112223333333 222 244444455567888865543211 22222
Q ss_pred ecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644 133 YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 211 (421)
Q Consensus 133 ~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~ 211 (421)
. .+. .-.|++......++++| ..++|+|||++ ...+.+. +.+|+..|+++.++-.. .+||+++..|.
T Consensus 77 ~-~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~-------lkdh~stvt~v~YN~~D-eyiAsvs~gGd 144 (673)
T KOG4378|consen 77 L-TGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRF-------LKDHQSTVTYVDYNNTD-EYIASVSDGGD 144 (673)
T ss_pred c-ccc--hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhh-------ccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence 2 232 44566666666899998 99999999998 4555543 48999999999999988 89999999999
Q ss_pred EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC-CeEEEEECCCCCcce-eEEeec
Q 014644 212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWDIRMDSTPV-ATFKIH 288 (421)
Q Consensus 212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~-~~i~i~d~~~~~~~~-~~~~~~ 288 (421)
|.|..+.++... ..+.. .....|.-+.|+|..+++++ +++ |.|.+||+.. ..+. .-...|
T Consensus 145 iiih~~~t~~~t----t~f~~------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~H 207 (673)
T KOG4378|consen 145 IIIHGTKTKQKT----TTFTI------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEAH 207 (673)
T ss_pred EEEEecccCccc----cceec------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchhhhc
Confidence 999999886532 22221 01345678999999887764 566 9999999975 4443 334556
Q ss_pred cCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccc
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 367 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
..+. ..+||+|. ..+|++.+.|..|++||+... .....+ ....|...++|.+. +.
T Consensus 208 sAP~---------------~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l-~y~~Plstvaf~~~-------G~ 263 (673)
T KOG4378|consen 208 SAPC---------------RGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRL-TYSHPLSTVAFSEC-------GT 263 (673)
T ss_pred cCCc---------------CcceecCCccceEEEecccceEEEeecccc-ccccee-eecCCcceeeecCC-------ce
Confidence 6654 68999995 567889999999999999854 222222 34567889999988 44
Q ss_pred eeeeecccCc-ccC---CCCCccccccccccCeEEEEEccCC
Q 014644 368 NLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTT 405 (421)
Q Consensus 368 ~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~ 405 (421)
+|+.|...|. ..+ ....++.....|...|++++|-|..
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999998 555 3445677778899999999998875
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=148.26 Aligned_cols=233 Identities=10% Similarity=0.052 Sum_probs=163.1
Q ss_pred eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644 141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~ 219 (421)
..|+.|++.|.+||.| .||.|.|||+. +...-++ +.+|..+|.+++|+++| +.|+++|.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~-------lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARM-------LSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhh-------hhccccceeEEEecCCC-CEeeeecCCceeEEEeccC
Confidence 7899999999999999 99999999998 3444443 48899999999999999 9999999999999999999
Q ss_pred ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE--EEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644 220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL--LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297 (421)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+... +.+.- .++|..+.|+|..+.. ++--+..-.+-++.. +.+.+-...... .
T Consensus 97 gs~l----~rirf--------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~-d--- 151 (405)
T KOG1273|consen 97 GSPL----KRIRF--------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDG-D--- 151 (405)
T ss_pred CCce----eEEEc--------------cCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCcc-c---
Confidence 8754 44444 5799999999964433 332223344444432 122221111100 0
Q ss_pred ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC-CCccceeeecCCcccccccceeeeecccC
Q 014644 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQ 376 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d~ 376 (421)
.+.. ..+..|.+.|++|++|...|.+.++|..+. .....++.-. ..++.+.++.. |+ .|+....|+
T Consensus 152 --ln~s---as~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~--g~-----~liiNtsDR 218 (405)
T KOG1273|consen 152 --LNSS---ASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRK--GR-----FLIINTSDR 218 (405)
T ss_pred --cccc---cccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEecc--Cc-----EEEEecCCc
Confidence 0000 023458899999999999999999999987 5555555444 77888888866 44 899999999
Q ss_pred c-ccCCCCCcccc--------cccccc-----CeEEEEEccCCCeEEEec--CCceEEEe
Q 014644 377 A-HENSSSGHHEL--------SYNLSS-----KLLHLAWHPTTNLIACAN--GNSLFFHY 420 (421)
Q Consensus 377 ~-~iw~~~~~~~~--------~~~~~~-----~v~~~~~spd~~~la~~~--~~~~~i~~ 420 (421)
. +.+...+.... ...... .=.+++|+.||.++++++ ...||||.
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 8 88832211111 011111 224689999999999888 56799995
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=6.3e-19 Score=145.15 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=182.1
Q ss_pred CcceEEEeec-------CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC---CeeEEEEecCCCCeEEEE
Q 014644 138 DFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 138 ~~~v~~l~~~-------~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~s~ 206 (421)
...|...+|- |+..+++++ .+.-|++||.- .+++...+ ....|.+ ...+++|+||| ..|++
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf-tG~lraSy-----~~ydh~de~taAhsL~Fs~DG-eqlfa- 175 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF-TGKLRASY-----RAYDHQDEYTAAHSLQFSPDG-EQLFA- 175 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeecc-ccccccch-----hhhhhHHhhhhheeEEecCCC-CeEee-
Confidence 3457777774 567788887 99999999998 45544332 2233443 34589999999 77765
Q ss_pred EcCCeEEEEEC-CcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCccee
Q 014644 207 SSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 207 ~~d~~v~iwd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~ 283 (421)
+....|+++|+ |.|+.+........+ -.+..+-+.+++|+|.. +.++.++. ..+-||.-.. ..++.
T Consensus 176 GykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~ 244 (406)
T KOG2919|consen 176 GYKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQ 244 (406)
T ss_pred cccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCcee
Confidence 56778999999 666544322111111 01225678999999954 47888887 7777887765 88888
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCceeEEecCCC-CccceeeecCCcc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRA 361 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (421)
.+.+|.+.+ +.++|.++|+.|.+|+. |-.|-.||++.....+..|..|.+ ....+.|..+..+
T Consensus 245 llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~ 309 (406)
T KOG2919|consen 245 LLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG 309 (406)
T ss_pred eecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC
Confidence 888998865 89999999999999986 778999999998788889999988 5666777766555
Q ss_pred cccccceeeeecccCc-ccCCC---CCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644 362 RRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418 (421)
Q Consensus 362 ~~~~~~~l~~g~~d~~-~iw~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i 418 (421)
+ .|++|+.||. ++|+. ++.......++..|+.++++|--+++|+++...++-
T Consensus 310 ~-----~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 310 E-----ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred c-----eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence 5 8999999999 99933 444555667788999999999999999998776653
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-20 Score=175.29 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=183.8
Q ss_pred CCcceEEEeecCCCCE----EEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 137 HDFNINSISNNSDCET----FVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~----l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
-..+.+.|+|.+.+.. |+.| .||.|.+||...- ......+ .+...|.+.|..+.|++..+++|++|+.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCC
Confidence 3457889999887665 7778 9999999998741 2222222 24478999999999999986799999999
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEee
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKI 287 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~ 287 (421)
|.|.|||+.+.+... .... ....+.|.+++|+..-. .|++++. |.+.|||++. .+++-.+..
T Consensus 139 geI~iWDlnn~~tP~----~~~~-----------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~ 202 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPF----TPGS-----------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSD 202 (1049)
T ss_pred CcEEEeccCCcCCCC----CCCC-----------CCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCccccccc
Confidence 999999998744221 1100 11146899999998644 5566766 8999999997 666655554
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 363 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (421)
+.... .+..++|+|+. ..|+++++|. .|.+||++......+++++|...+-++.|++..
T Consensus 203 ~~~~~-------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D---- 265 (1049)
T KOG0307|consen 203 TPGRM-------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD---- 265 (1049)
T ss_pred CCCcc-------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC----
Confidence 44321 12589999974 4466666543 699999998877889999999999999999873
Q ss_pred cccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-eEEEec-CCceEEEe
Q 014644 364 SSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY 420 (421)
Q Consensus 364 ~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-~~~~~i~~ 420 (421)
..+|++.+.|+. ..| ..+|.+...-....++..+.|+|..+ .+++++ ++.|-||+
T Consensus 266 --~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 266 --PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred --chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 237889999999 999 45566666655678899999999998 666666 77788885
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=9.3e-19 Score=153.33 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=157.3
Q ss_pred EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhh
Q 014644 152 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 230 (421)
Q Consensus 152 ~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 230 (421)
.++.+ .||.+.+.+-. ++.-+. ...|.+.+.+-.|+|+| .-|++++.||.|++|.-. |-+. .++
T Consensus 77 ~~~i~s~DGkf~il~k~--~rVE~s-------v~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLR----Stl 141 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS--ARVERS-------ISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLR----STV 141 (737)
T ss_pred eEEEEcCCceEEEeccc--chhhhh-------hhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHH----HHH
Confidence 34444 88888887654 332222 37899999999999999 999999999999999843 3221 111
Q ss_pred ccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644 231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 310 (421)
Q Consensus 231 ~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
. ....+|.+++|.|+...++.+..+.+.|=.+.. ...+-.++.|.+.+ .++
T Consensus 142 ~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~~ 192 (737)
T KOG1524|consen 142 V-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LSL 192 (737)
T ss_pred h-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EEe
Confidence 1 114689999999999888877667888888875 66667799999876 899
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcccccc
Q 014644 311 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY 390 (421)
Q Consensus 311 ~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~ 390 (421)
.|+|.+..+++|++|-..+|||-. +.....-..|..++++++|.|+. .++.|+.+..++ ..
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd~--------~~~v~S~nt~R~---------~~ 253 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPEK--------DYLLWSYNTARF---------SS 253 (737)
T ss_pred ecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeecccc--------ceeeeeeeeeee---------cC
Confidence 999999999999999999999966 46677778999999999999982 345555433221 12
Q ss_pred ccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644 391 NLSSKLLHLAWHPTTNLIACANGNSLFFH 419 (421)
Q Consensus 391 ~~~~~v~~~~~spd~~~la~~~~~~~~i~ 419 (421)
.-.++|..++|||||..+++|...+..++
T Consensus 254 p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCccceEEEEEcCCCceeeccccCceEEE
Confidence 23578999999999999999997776554
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.9e-19 Score=145.30 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=183.6
Q ss_pred CeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644 48 SMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 126 (421)
Q Consensus 48 ~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 126 (421)
+.+|++-+.|+|++||..+++ ++.+.. ++..+..++|... + ++.. +..+ .+++.+++||+....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~--~~~~~N~vrf~~~-------d-s~h~--v~s~--ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG--PPATTNGVRFISC-------D-SPHG--VISC--SSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC--CCCcccceEEecC-------C-CCCe--eEEe--ccCCeEEEEEeecchh
Confidence 679999999999999999876 333333 2222222222211 0 1111 1111 2367899999987632
Q ss_pred eeeeeeecCCCC-cceEEEeecCCCCEEEEE-----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC
Q 014644 127 ARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 200 (421)
Q Consensus 127 ~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 200 (421)
..+..+ .+|. .+..+++.+..++.+++| .+-.|.+||++...+.++.+ ...|.+.|++++|+|..+
T Consensus 107 -~a~~~~-~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 107 -SARISW-TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPSDP 178 (376)
T ss_pred -hhheec-cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCCCC
Confidence 233334 4555 567888888788899886 36789999999666656544 278999999999999999
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEec-CCeEEEEECCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMD 278 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~i~d~~~~ 278 (421)
++|++||.||.|.+||+......+....++.. ...|..+.|..++ +.|.+-+ .++..+|+++.
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~- 243 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED- 243 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-
Confidence 99999999999999999886555545555554 6779999999887 2344444 49999999985
Q ss_pred CcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEE-EeeCCCeEEEEecCC---C--CCceeEEec-CCCCc
Q 014644 279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFA-TGSYSNLLRIFSHGV---G--SAGGITVEA-GKNEN 350 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~-~~s~dg~i~iwd~~~---~--~~~~~~~~~-~~~~~ 350 (421)
+.+...+..+.-.........+.+.+ .. +.+| +....+ .|+.-|...++-+.. + ......+++ |..-|
T Consensus 244 ~~~~~~~~~~~~~~~d~r~~~~~dY~---I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV 319 (376)
T KOG1188|consen 244 GSEETWLENPDVSADDLRKEDNCDYV---IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV 319 (376)
T ss_pred CChhhcccCccchhhhHHhhhhhhhe---ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence 55444443321111111111111111 11 2234 333444 344356666655442 2 233556666 67778
Q ss_pred cceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
+.+.|... ..++.+|+.||. .+|.
T Consensus 320 R~i~~~~~-------~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 320 RDILFDVK-------NDVLYTGGEDGLLQAWK 344 (376)
T ss_pred HHHhhhcc-------cceeeccCCCceEEEEe
Confidence 88888755 458999999999 9995
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5e-18 Score=152.72 Aligned_cols=234 Identities=14% Similarity=0.050 Sum_probs=173.7
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc-CCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
.--..+|.++|++.+.+.||.+ .+|.|.+|++..+--+...+ .++ ...|.+++|++. ..|.+.+.+|.|
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi-------~g~~drsIE~L~W~e~--~RLFS~g~sg~i 92 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI-------HGPEDRSIESLAWAEG--GRLFSSGLSGSI 92 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE-------ecCCCCceeeEEEccC--CeEEeecCCceE
Confidence 3446789999999999999999 99999999999443333333 333 467999999965 578899999999
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE--Eeecc
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT--FKIHE 289 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~--~~~~~ 289 (421)
.-||+-+.... ..++. ..+.|.+++.+|.+..++.|++ |.+..++... +..... +....
T Consensus 93 ~EwDl~~lk~~----~~~d~-------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 93 TEWDLHTLKQK----YNIDS-------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGP-DKITYKRSLMRQK 154 (691)
T ss_pred EEEecccCcee----EEecC-------------CCcceeEEEeCCccceEEeecCCceEEEEecCC-ceEEEEeeccccc
Confidence 99999987643 22222 2568999999999999999976 9888888764 433222 22222
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec--------CCCCccceeeecCCcc
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA--------GKNENRKPILQAAPRA 361 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 361 (421)
+. +.+++|+|++..|++|+.||.|++||+..+.... .... ..--|+++.+-.+
T Consensus 155 sR---------------vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd--- 215 (691)
T KOG2048|consen 155 SR---------------VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRD--- 215 (691)
T ss_pred ce---------------EEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEeec---
Confidence 22 2799999999999999999999999999874332 1111 2223455555433
Q ss_pred cccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEE
Q 014644 362 RRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 419 (421)
Q Consensus 362 ~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~ 419 (421)
+.|++|...|. ++|+ .+-++.....|...|.+++..++++++.+++ +..+.-|
T Consensus 216 -----~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 216 -----STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred -----CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 37999999999 9993 3445556667899999999999999988888 5556655
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9.2e-19 Score=155.24 Aligned_cols=258 Identities=16% Similarity=0.182 Sum_probs=185.2
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
.|...+ .+|++.|++|...|.|.+|++| +||+|+||.+. ++.+++.+. ..+.|.|++|+|.+..-++++
T Consensus 391 ~~~lvy-rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~~--------~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 391 RCALVY-RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTVQ--------FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred eeeeeE-eccCCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEEe--------ecceeEEEEecCCCCceeEEE
Confidence 455566 8999999999999999999999 99999999999 788887762 335799999999875555555
Q ss_pred EcCCeEEEEECCccccccc--chh----------------hhcccc--ccCCCcccccccccceeEEEEcCCCCEEEEe-
Q 014644 207 SSRGFVRLVDMRQSALCDH--SAR----------------ILRDAA--ESHGSKSFFTEIIASISDIKFANDGQHLLSR- 265 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~--~~~----------------~~~~h~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 265 (421)
+....+.|-+..-|..... ... .|.... +........-.|...|..+.|+..|.||++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 5555566666544421100 000 111100 0000011234567789999999999999974
Q ss_pred -cC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644 266 -DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 342 (421)
Q Consensus 266 -~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 342 (421)
+. ..|.|+++.. ......|....+.+ .++.|+|...+|++++. ..|+|||+... .+...
T Consensus 541 ~~~~~~~VliHQLSK-~~sQ~PF~kskG~v---------------q~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKk 602 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSK-RKSQSPFRKSKGLV---------------QRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKK 602 (733)
T ss_pred cCCCcceEEEEeccc-ccccCchhhcCCce---------------eEEEecCCCceEEEEec-cceEEEehhHH-HHHHH
Confidence 22 7899999975 33333343333322 68999999888888875 78999999874 66667
Q ss_pred EecCCCCccceeeecCCcccccccceeeeecccCcccC---C-CCCccccccccccCeEEEEEccCCCeEEEecC-CceE
Q 014644 343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN---S-SSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLF 417 (421)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw---~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~ 417 (421)
+......+..++.+|. +..|+.|+.|+.-+| + ....-..+.-|...|++++||+.-+++|+|++ +.+.
T Consensus 603 L~tg~kwiS~msihp~-------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 603 LLTGSKWISSMSIHPN-------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HhcCCeeeeeeeecCC-------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 7777778888999887 448999999999888 2 22344556678999999999999999999996 4577
Q ss_pred EEe
Q 014644 418 FHY 420 (421)
Q Consensus 418 i~~ 420 (421)
+|.
T Consensus 676 Vfh 678 (733)
T KOG0650|consen 676 VFH 678 (733)
T ss_pred EEe
Confidence 764
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.3e-19 Score=154.96 Aligned_cols=235 Identities=16% Similarity=0.211 Sum_probs=171.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
..|.+-|.++.| ++....|++++.||+|++|+++... ....
T Consensus 291 ~s~~d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~-------~s~~------------------------------ 331 (577)
T KOG0642|consen 291 RSHDDCIRALAF--HPSEPVLITASEDGTLKLWNLQKAK-------KSAE------------------------------ 331 (577)
T ss_pred ecchhhhhhhhc--CCCCCeEEEeccccchhhhhhcccC-------Cccc------------------------------
Confidence 357888999999 6778899999999999999994411 0000
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec--CCCCCCcc
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDL 186 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~--~~~~~~~~ 186 (421)
...+++.+| .+|.++|.|+++.++++.+.+| .||+|+.|++..+.......+. -...+.||
T Consensus 332 ---------------~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh 395 (577)
T KOG0642|consen 332 ---------------KDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH 395 (577)
T ss_pred ---------------cceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc
Confidence 001677778 9999999999999999999999 9999999977643332222211 11346899
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc--ccc----hh-hhc------cccccCC--------------C
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHS----AR-ILR------DAAESHG--------------S 239 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~----~~-~~~------~h~~~~~--------------~ 239 (421)
++.|+.+++++.. ..|++++.||++++|+......+ ... .. .++ .|..... .
T Consensus 396 tdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~ 474 (577)
T KOG0642|consen 396 TDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD 474 (577)
T ss_pred ccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence 9999999999997 88999999999999998765431 000 00 000 0000000 0
Q ss_pred cccc-------cccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEE
Q 014644 240 KSFF-------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 311 (421)
Q Consensus 240 ~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++ ..-...+..+.++|.+.+.+++.. +.|+++|..+ +.++.....|...+ ++++
T Consensus 475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tsla 538 (577)
T KOG0642|consen 475 LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLA 538 (577)
T ss_pred eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeecccee---------------ccee
Confidence 0000 111245778889999988888866 9999999987 88888888887755 7999
Q ss_pred EcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 312 VSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 312 ~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+.|+|-+|++++.|+.+++|.+...
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999998754
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.6e-16 Score=143.25 Aligned_cols=238 Identities=9% Similarity=-0.005 Sum_probs=148.3
Q ss_pred cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEE
Q 014644 139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLV 215 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iw 215 (421)
+....++++|++++|+++ .++.|.+|+++..+. +.... . .........++|+|++ ++|++++ .++.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~----~-~~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAA----E-SPLPGSPTHISTDHQG-RFLFSASYNANCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEee----e-ecCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence 446678999999998765 689999999973332 22111 0 1122346789999999 7777666 58899999
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCccee------EEee
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA------TFKI 287 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~------~~~~ 287 (421)
++............+.. ......++++|+|+++++++ . +.|.+||+.+.+.... ....
T Consensus 108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 99743211111111111 23467789999999997654 3 8999999975332211 1111
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCC-Cc--eeEEecCCC------Cccceeeec
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS-AG--GITVEAGKN------ENRKPILQA 357 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~-~~--~~~~~~~~~------~~~~~~~~~ 357 (421)
...+ ..+.|+|+|+++++..+ ++.|.+|+++... .. ...+..... ....+.++|
T Consensus 174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 1111 57999999999988876 8999999998421 11 222222211 122466777
Q ss_pred CCcccccccceeeeecc-cCc-ccCCC--CCcccccccc---ccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644 358 APRARRSSLSNLTRGLY-RQA-HENSS--SGHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY 420 (421)
Q Consensus 358 ~~~~~~~~~~~l~~g~~-d~~-~iw~~--~~~~~~~~~~---~~~v~~~~~spd~~~la~~~--~~~~~i~~ 420 (421)
+ ++ +|+++.. ++. .+|.. .+......++ ......++++|||++|++++ ++.+.+|.
T Consensus 238 d--g~-----~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 238 D--GR-----HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred C--CC-----EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 7 44 6666644 444 77732 2222222222 23566899999999999877 56788885
No 172
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.4e-17 Score=136.39 Aligned_cols=232 Identities=13% Similarity=0.115 Sum_probs=156.7
Q ss_pred ecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeEEEEEcC
Q 014644 133 YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSR 209 (421)
Q Consensus 133 ~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d 209 (421)
+..+|.+-|+++.|.+.|+.+|+| .|++|+|||.+......... ...+.|.+.|..+.|.+- | +.+|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfG-qvvA~cS~D 82 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFG-QVVATCSYD 82 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCcccc-ceEEEEecC
Confidence 346899999999999999999999 99999999976444434332 244779999999999653 5 899999999
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~~~~~~~~ 286 (421)
+++.||.=.. ...+.|......+..+......|+.+.|.|. |-.+|+++. |.+|||+.-... .+..+.
T Consensus 83 rtv~iWEE~~--------~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~ 153 (361)
T KOG2445|consen 83 RTVSIWEEQE--------KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWT 153 (361)
T ss_pred Cceeeeeecc--------cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccch
Confidence 9999997532 1122212223334445566789999999995 667777754 999999975322 122221
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCC---CCEEEEeeCC-----CeEEEEecCCCCC---ceeEEecCCCCccceee
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGSYS-----NLLRIFSHGVGSA---GGITVEAGKNENRKPIL 355 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~l~~~s~d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~ 355 (421)
........+.+...+.. ...++.|+|. ..+||.|+.+ +.++||......+ ....+.+|+++|+.++|
T Consensus 154 Lq~Ei~~~~~pp~~~~~--~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQ--PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred hhhhhhhccCCcccccC--cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 11110000000000000 1168899984 5678888876 5789998876642 24567789999999999
Q ss_pred ecCCcccccccceeeeecccCcccCCCC
Q 014644 356 QAAPRARRSSLSNLTRGLYRQAHENSSS 383 (421)
Q Consensus 356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~~ 383 (421)
.|.- |+ +...||+++.||.+||+.+
T Consensus 232 APn~-Gr--~y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 232 APNI-GR--SYHLLAVATKDGVRIFKVK 256 (361)
T ss_pred cccc-CC--ceeeEEEeecCcEEEEEEe
Confidence 8873 22 2678888888888888443
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=6.2e-18 Score=137.24 Aligned_cols=219 Identities=20% Similarity=0.256 Sum_probs=148.0
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
+-++|+||.| .|++..|++-. |..|.+|+++++... ...
T Consensus 122 avg~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~-vae------------------------------------- 160 (370)
T KOG1007|consen 122 AVGKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKI-VAE------------------------------------- 160 (370)
T ss_pred HhCceeeEEE--cCCCCeeEEec-cCceEEEEcccCcch-hee-------------------------------------
Confidence 4459999999 46777777666 899999999886511 100
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
.......+|....++-+|+| +++.+++..|++++.||+++..+...+- ..|...
T Consensus 161 -----------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-------dAHgq~ 216 (370)
T KOG1007|consen 161 -----------------VLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-------DAHGQR 216 (370)
T ss_pred -----------------ecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-------hhhcce
Confidence 00000134666788889998 7999999999999999999544444432 678889
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEe-cC
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY 267 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-~~ 267 (421)
|..+.|+|+...+|++++.||.|++||.|+.+.. +..+ .+|...|.++.|+|. .++|+++ +|
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el-------------~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQEL-------------PGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---cccc-------------CCCceEEEEEEecCccceEEEecCCC
Confidence 9999999998788999999999999999985432 2333 445889999999996 4566666 45
Q ss_pred CeEEEEECCCCCcceeEEeeccC-------cc--------cccccc-cCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEE
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEH-------LR--------PKLCDL-YNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI 330 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~-------~~--------~~~~~~-~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~i 330 (421)
..|.+|....-....+....+.. .. ..+... .+.|++ ++++||.- .-.+|+-|+||.+.|
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV---Y~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV---YALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce---EEEeeccCCCeeEEEeccCceEEe
Confidence 88889876431110000000000 00 001111 123333 79999985 445778899999988
Q ss_pred EecC
Q 014644 331 FSHG 334 (421)
Q Consensus 331 wd~~ 334 (421)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 6655
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=7.4e-18 Score=151.45 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=173.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|++.|++|+| +.+|.++|+|+.|+.|.+|.-.- +-+..+.|.+.+.||.|+|-...+.+++.+.
T Consensus 50 KgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--------- 115 (1081)
T KOG1538|consen 50 KGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--------- 115 (1081)
T ss_pred ccccceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh---------
Confidence 389999999999 79999999999999999998543 3344566888777777776665555544432
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.-+|+.+.. .+.. ..-..+|.+++|..||++++.| .+|+|.+-+-. +++..++- .-.+...
T Consensus 116 ------FglWS~~qK----~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Ns 177 (1081)
T KOG1538|consen 116 ------FGLWSPEQK----SVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNS 177 (1081)
T ss_pred ------ccccChhhh----hHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCC
Confidence 334554432 1111 1234578899999999999999 99999998765 44444432 2245678
Q ss_pred CeeEEEEecCC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 189 VITSAEFHPIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 189 ~v~~~~~~p~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
+|++++|+|.. ...++......++.+|.+........ +.+ .-...++.+.++|++++.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--r~L----------------~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--RAL----------------NFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--ccC----------------CCCchhheeccCCcEEEE
Confidence 99999999974 24678888888999888765332211 111 224578999999999998
Q ss_pred ec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 265 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 265 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
|+ ++.+++|--+ +-.+-++.....++ +.++..|++++++.|+.||+|-.|++..
T Consensus 240 GGsdk~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCCceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHH
Confidence 75 4999999753 55555554444443 8999999999999999999999998653
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=3.5e-15 Score=139.50 Aligned_cols=324 Identities=20% Similarity=0.293 Sum_probs=216.1
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
...|...|..+.+ .+.+..++.++.|+.+.+|+..... ...+..... ..+. -.... .++.....
T Consensus 61 ~~~~~~~i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~-~~~~~~~~ 126 (466)
T COG2319 61 LRGHEDSITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVS----------KLALS-SPDGNSIL 126 (466)
T ss_pred eeeccceEEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-Ccee----------eEEEE-CCCcceEE
Confidence 4578999999999 7889999999999999999988874 222222111 1111 11111 22232222
Q ss_pred ecccccccceeEEeecc-cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 107 HLEWTENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
......+..+.+|+... . .....+ ..|...|..++|+|++..++++ . |+.+++|++. .......+
T Consensus 127 ~~~~~~d~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 194 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPG---KLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTL------- 194 (466)
T ss_pred eccCCCCccEEEEEecCCC---eEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEee-------
Confidence 22222244789999886 3 555666 7999999999999999988887 5 9999999998 34444443
Q ss_pred CccCCCeeEEEEecCCCC-eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 184 DDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
.+|...+.+++|+|++ . .+++++.|+.|++||...+..... .+.. |.... ...|+|++.++
T Consensus 195 ~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~~~-------------~~~~~-~~~~~~~~~~~ 256 (466)
T COG2319 195 AGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TLSG-------------HSDSV-VSSFSPDGSLL 256 (466)
T ss_pred ccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ecCC-------------CCcce-eEeECCCCCEE
Confidence 5689999999999998 5 555558999999998875443310 2333 23343 22899999888
Q ss_pred EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
++++. +.+++|+++.....+..+..|...+ .++.|.|++..+++++.|+.+.+|++.+.. ...
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 320 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLS 320 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEE
Confidence 87665 9999999986333244444444332 688999988888889889999999888763 333
Q ss_pred EE--ecCCCCccceeeecCCcccccccceeeee-cccCc-ccCCCCCcc-ccccccccCeEEEEEccCCCeEEE-ec-CC
Q 014644 342 TV--EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIAC-AN-GN 414 (421)
Q Consensus 342 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~d~~-~iw~~~~~~-~~~~~~~~~v~~~~~spd~~~la~-~~-~~ 414 (421)
.. ..|...+..+.+ ... +. .+..+ ..|+. .+|...... .........+..+.+++ ...++. +. ++
T Consensus 321 ~~~~~~~~~~~~~~~~-~~~-~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 321 SLTLKGHEGPVSSLSF-SPD-GS-----LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred EeeecccCCceEEEEE-CCC-CC-----EEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCC
Confidence 33 477777888888 431 12 34444 56666 778433332 22222222388999999 544443 33 66
Q ss_pred ceEEEe
Q 014644 415 SLFFHY 420 (421)
Q Consensus 415 ~~~i~~ 420 (421)
.+.+|+
T Consensus 393 ~~~~~~ 398 (466)
T COG2319 393 TVRLWD 398 (466)
T ss_pred ceEEEe
Confidence 788886
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.9e-16 Score=144.26 Aligned_cols=308 Identities=13% Similarity=0.132 Sum_probs=207.2
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+.|.-.++++++ +|+++++|+|..||.|.+|.--..+.. .
T Consensus 201 ~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~~~--------~----------------------------- 241 (792)
T KOG1963|consen 201 TVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDFGSSDD--------S----------------------------- 241 (792)
T ss_pred hhhhcccceeEEe--ccccceEEEeccCCcEEEEeccccccc--------c-----------------------------
Confidence 4567778999999 799999999999999999973321100 0
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
...+.+ .-|...|.+++|+++|.+|++| ..+.+-+|.+.++++. . ++.-.
T Consensus 242 -------------------~t~t~l-HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--f-------LPRLg 292 (792)
T KOG1963|consen 242 -------------------ETCTLL-HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--F-------LPRLG 292 (792)
T ss_pred -------------------ccceEE-EecccccceeEEecCCceEeecccceEEEEEeecCCCcc--c-------ccccC
Confidence 111223 6788999999999999999999 9999999999955532 2 35667
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
++|..+.++||+ .+.+....|..|.+..+.+.... ..+.+ ...+ ....-+...+-.+.++++|--+.++-...
T Consensus 293 s~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k----~tIsg-i~~~-~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 293 SPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIK----STISG-IKPP-TPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred CeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhh----hhccC-ccCC-CccccccccccceeEEEcCCCCceeecCC
Confidence 899999999999 88888888999999987664432 22222 1111 00111122456778899995445554444
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC--------CC--eEEEEecCCC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------SN--LLRIFSHGVG 336 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~--------dg--~i~iwd~~~~ 336 (421)
+.|.+||+-+ ...+..+..-..... ..+. .....++.++.+-.|.+++|.-. || .+++|-....
T Consensus 366 ~g~vQ~ydl~t-d~~i~~~~v~~~n~~---~~~~-n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 366 PGHVQFYDLYT-DSTIYKLQVCDENYS---DGDV-NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred CceEEEEeccc-cceeeeEEEEeeccc---CCcc-eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 9999999987 444444432211100 0000 11223467777778999998642 33 5788987654
Q ss_pred CCc----eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcc----------ccccccccCeEEE
Q 014644 337 SAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHH----------ELSYNLSSKLLHL 399 (421)
Q Consensus 337 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~----------~~~~~~~~~v~~~ 399 (421)
.+. ......|.......++.+.... ..+++.+.||. ++| ...+.+ ....-|..+++.+
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs-----~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~ 515 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRS-----VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL 515 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCccc-----ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccch
Confidence 322 3344578777777777665322 26889999999 999 111111 1111357789999
Q ss_pred EEccCCCeEEEecCCceEEEeC
Q 014644 400 AWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 400 ~~spd~~~la~~~~~~~~i~~~ 421 (421)
+|+.||..||++.++.|.+|+.
T Consensus 516 ~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 516 CFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhcCCCcEEEEecCCEEEEecC
Confidence 9999999999999999999973
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=4.6e-18 Score=140.41 Aligned_cols=221 Identities=14% Similarity=0.192 Sum_probs=148.7
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|...|+.++|+| ...++++++|.|.+||+|++++.....+..
T Consensus 132 ~ghG~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------------------------------- 175 (385)
T KOG1034|consen 132 RGHGGSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------------------------------- 175 (385)
T ss_pred eccCccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEec-----------------------------------
Confidence 48999999999953 336899999999999999999875322211
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC---------
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--------- 179 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--------- 179 (421)
-+ .+|.+.|.++.|+++|.+|+++ .|.+|++|++... +....++..
T Consensus 176 ----------------------G~-egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~-~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 176 ----------------------GV-EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK-EFKNKLELSITYSPNKTT 231 (385)
T ss_pred ----------------------cc-ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh-HHhhhhhhhcccCCCCcc
Confidence 02 7999999999999999999998 9999999999821 111100000
Q ss_pred ------C------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc-ccccccchhhhccccccCCCc----cc
Q 014644 180 ------P------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSK----SF 242 (421)
Q Consensus 180 ------~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~----~~ 242 (421)
. .+-.-|...|-|+.|-- .++++-+-++.|..|..-. ++.. +.. ..+... ..
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~----~~v----kp~es~~Ti~~~ 300 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESI----HNV----KPPESATTILGE 300 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhh----hcc----CCCccceeeeeE
Confidence 0 01234667777777763 6788888899999998732 1111 100 011111 11
Q ss_pred ccccccceeEE--EEcCCCCEEEEecC-CeEEEEECCCCCcce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644 243 FTEIIASISDI--KFANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 318 (421)
Q Consensus 243 ~~~~~~~v~~~--~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 318 (421)
++-....+.-+ +|.|-++.||.|.. |.+.+||++. .++. ..-..|..... .|...+|+.||..
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~~~------------tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKSGS------------TVRQTSFSRDGSI 367 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccccc------------eeeeeeecccCcE
Confidence 22223345544 45566889999988 9999999986 4432 21111221111 2378899999999
Q ss_pred EEEeeCCCeEEEEecC
Q 014644 319 FATGSYSNLLRIFSHG 334 (421)
Q Consensus 319 l~~~s~dg~i~iwd~~ 334 (421)
|+...+|++|.-||..
T Consensus 368 lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 368 LVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeCCCcEEEEEee
Confidence 9999999999999854
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.3e-16 Score=134.96 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=149.9
Q ss_pred CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
..+.+|+++|..++|+|-..+.||+||.|.+|.||++..+.+... .......+.+|...|.-++|+|.-.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------ltepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------LTEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------cccceEEEeecceeEEEEeecccch
Confidence 355899999999999998778999999999999999988654311 1123334677899999999999744
Q ss_pred -EEEE-ecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644 261 -HLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 338 (421)
Q Consensus 261 -~l~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~ 338 (421)
.|++ |+|.+|.+|++.+ ++.+-.+. |...+ ++++|+.||.+|++.+.|..|||||.+++ .
T Consensus 145 NVLlsag~Dn~v~iWnv~t-geali~l~-hpd~i---------------~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~ 206 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGT-GEALITLD-HPDMV---------------YSMSFNRDGSLLCTTCKDKKVRVIDPRRG-T 206 (472)
T ss_pred hhHhhccCCceEEEEeccC-CceeeecC-CCCeE---------------EEEEeccCCceeeeecccceeEEEcCCCC-c
Confidence 4444 4569999999998 77776676 66654 79999999999999999999999999988 5
Q ss_pred ceeEEecCCCCc-cceeeecCCcccccccceeeeec---ccCc-ccCCCC---Cc-cccccccccCeEEEEEccCCCeEE
Q 014644 339 GGITVEAGKNEN-RKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS---GH-HELSYNLSSKLLHLAWHPTTNLIA 409 (421)
Q Consensus 339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~---~d~~-~iw~~~---~~-~~~~~~~~~~v~~~~~spd~~~la 409 (421)
....-.+|.+.- ....|-.+ +..+.+|- .+.. .+|+.. +. ...-.+.+..|.---|.||..+|.
T Consensus 207 ~v~e~~~heG~k~~Raifl~~-------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLAS-------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred EeeecccccCCCcceeEEecc-------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 555557777643 33344444 22444443 3344 788332 22 223345667788888999999988
Q ss_pred Eec--CCceEEEe
Q 014644 410 CAN--GNSLFFHY 420 (421)
Q Consensus 410 ~~~--~~~~~i~~ 420 (421)
.++ +++|+-|.
T Consensus 280 l~GKGD~~IRYyE 292 (472)
T KOG0303|consen 280 LCGKGDSSIRYFE 292 (472)
T ss_pred EEecCCcceEEEE
Confidence 776 56677663
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=158.22 Aligned_cols=273 Identities=17% Similarity=0.197 Sum_probs=198.2
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
-++|-.+|.|+.| +..|.++++|+.|..|+||..+++
T Consensus 186 LlgH~naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~----------------------------------------- 222 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIF--DRTGRYIITGSDDRLVKIWSMETA----------------------------------------- 222 (1113)
T ss_pred HHhhhhheeeeee--ccccceEeecCccceeeeeeccch-----------------------------------------
Confidence 3589999999999 788999999999999999997764
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.|+... .||.+.|+.++.+.+..+++++ .|..|++|.+. .+..+.++ .+|+
T Consensus 223 -------------------~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~pvsvL-------rght 274 (1113)
T KOG0644|consen 223 -------------------RCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAPVSVL-------RGHT 274 (1113)
T ss_pred -------------------hhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecC-CCchHHHH-------hccc
Confidence 333344 8999999999999999899998 99999999998 67777655 8999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
+.|++++|+|-. +.+.||++++||.+-.. ..+.. .... ......+.++.|..++.-+++++.
T Consensus 275 gavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~p-----rp~~--~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVP-----RPLK--FTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cceeeeccCccc-----cCCCCCceEeccccccc------cccCC-----CCCC--cccccceeeeeccccccccccccC
Confidence 999999999963 67899999999988211 11111 0000 001356778888888888888876
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
+.-..|.+.. -. .+... .+ =+.++.+ ..+.++.-.+-.+.+|++.++ .+...+.+
T Consensus 337 d~ea~n~e~~~-l~------~~~~~-----------li----f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~g 393 (1113)
T KOG0644|consen 337 DGEARNHEFEQ-LA------WRSNL-----------LI----FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMG 393 (1113)
T ss_pred CcccccchhhH-hh------hhccc-----------eE----EEeccccccccceeeeeeeEeeeeecccc-hhhhhhcc
Confidence 7777777642 10 11100 00 0111112 245666777888999999998 88899999
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc---cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~---~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
|.+++..+.++|-.+. ...+.+.||. .||+..+- ....++ ...+.+-+||+||+.+++.. -+.++|+.
T Consensus 394 hsd~~yvLd~Hpfn~r------i~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPR------IAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cccceeeeeecCCCcH------hhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEec
Confidence 9999999999987542 3456778888 88833221 112244 34556789999999998877 45688875
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-16 Score=150.78 Aligned_cols=265 Identities=12% Similarity=0.150 Sum_probs=175.1
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC-Cc--eeEEeeecCCCCCcccccccccccceeeccCC-CCceeeeec
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHL 108 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~g 108 (421)
...|+.+++.+..|..++++|+.||.||||+-. +. +.+....... ..++.......+ ...++. .++..+.+|
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~---Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS---LSDQLPGARGTG-LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc---ccccCccCCCCC-eeeehhhhCCeEEecC
Confidence 357899999877778899999999999999833 21 1121111100 001111111111 112222 122333333
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCce--eeeeeecCCCCCC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMD 184 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~ 184 (421)
. ...+++||.+.. .+.+.+..+-...|+++.-+. .|..+++| .||.|++||.+.... .+.. .+
T Consensus 1185 d---~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-------~R 1251 (1387)
T KOG1517|consen 1185 D---VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-------YR 1251 (1387)
T ss_pred C---eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-------ec
Confidence 2 347999999887 666655455566778776543 47999999 999999999884433 3333 26
Q ss_pred ccCCC--eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 185 DLTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 185 ~~~~~--v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
.|+.. |..+.+.+.|-..|++|+.||.|++||+|... ...... ...| -...+..+++..+++...+
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~----------~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAH----------WEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccce-eeec----------cccCccceeeeeccCCCee
Confidence 78776 99999999885569999999999999999842 111111 1111 0002258999999999999
Q ss_pred EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
|+|+.+.|+||++. ++.+..++...... ...+-.+.+++|+|-.-++|+|+.|..|.||.....
T Consensus 1320 AsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99988899999985 66665555433221 112223368999999889999999999999987654
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.6e-17 Score=133.38 Aligned_cols=266 Identities=11% Similarity=0.066 Sum_probs=168.7
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
+|+..++.++|........+.+++.||+||+||++... ..++.....++ ....+.+.+-....++.|.
T Consensus 68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~-----------~~f~~ld~nck~~ii~~Gt 136 (376)
T KOG1188|consen 68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG-----------TPFICLDLNCKKNIIACGT 136 (376)
T ss_pred CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC-----------CcceEeeccCcCCeEEecc
Confidence 67888999999743356789999999999999998765 33333333332 2344555554555566665
Q ss_pred c--ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644 110 W--TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 185 (421)
Q Consensus 110 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~ 185 (421)
. ..+..+.+||+.... ++++.+...|.+.|+++.|+| +-++|++| -||-|.|+|++...+.-... ..-.
T Consensus 137 E~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~-----~viN 209 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL-----HVIN 209 (376)
T ss_pred ccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH-----Hhhc
Confidence 5 445588999998762 336777688999999999999 56788888 99999999998443221111 1134
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCCCEEE-
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLL- 263 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 263 (421)
|...|.++.|..++-+.|.+-+...+..+|++..+.......+. +.. ...+ . ......+-......++...+
T Consensus 210 ~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~----~d~r-~-~~~~dY~I~~~~~~~~~~~~l 283 (376)
T KOG1188|consen 210 HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA----DDLR-K-EDNCDYVINEHSPGDKDTCAL 283 (376)
T ss_pred ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh----hhHH-h-hhhhhheeecccCCCcceEEE
Confidence 66779999999987668999999999999999987632110000 000 0000 0 00011111111112333433
Q ss_pred EecC-CeEEEEECCC--C---CcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 264 SRDY-MNLKLWDIRM--D---STPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
.+++ +...++-+.. . .+....+.+ |...+ +++.|...+..+.+|++||.+.+|..+.
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV---------------R~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV---------------RDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eccccCceeEEEeeecccccccCccccccCCcHHHH---------------HHHhhhcccceeeccCCCceEEEEecCC
Confidence 4454 5555555431 1 233444555 33332 6778888889999999999999999643
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-15 Score=120.15 Aligned_cols=292 Identities=11% Similarity=0.089 Sum_probs=183.5
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.|.+-+| +|.+++|++|..+|+|-+..+.+--.. ....++
T Consensus 12 tvf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~---sa~~~g----------------------------------- 51 (325)
T KOG0649|consen 12 TVFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSG---SAEPPG----------------------------------- 51 (325)
T ss_pred HHHHHhh--CCcceEEEEecCCCeEEEEEehhhhcc---ccCCCC-----------------------------------
Confidence 3455567 688999999999999999998652100 000000
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCce---eeeeeecCCCCCC--ccCCC
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ---CFNIVDMKPSNMD--DLTEV 189 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~---~~~~~~~~~~~~~--~~~~~ 189 (421)
...+-.. ++|.++|+.++|. ..+|+++.||.|+-|..++..+ +.+..+.+++.-. ..--.
T Consensus 52 ------------k~~iv~e-qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe 116 (325)
T KOG0649|consen 52 ------------KLKIVPE-QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE 116 (325)
T ss_pred ------------Ccceeec-cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence 0222233 7999999999998 5688888789999998763322 1112211111000 11235
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 268 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~ 268 (421)
|.++-..|.. +.++.++.|+.++.||+.+|+.. +.+.+| .+.+.++.--.....+++|++ |
T Consensus 117 INam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~----r~~rGH-------------tDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 117 INAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ----REYRGH-------------TDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred cceeEeccCC-CcEEEecCCeEEEEEEecCCEEE----EEEcCC-------------cceeeeeeecccCcceeecCCCc
Confidence 7889999998 77777789999999999999865 566664 889999998555556677655 9
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
++|+||+++ ++.++.+....... .+.+ . ... +-.+..-+..+|++|+ ...+.+|.++.. ....++ .-..
T Consensus 179 tvRvWd~kt-~k~v~~ie~yk~~~-~lRp-~-~g~----wigala~~edWlvCGg-Gp~lslwhLrss-e~t~vf-pipa 247 (325)
T KOG0649|consen 179 TVRVWDTKT-QKHVSMIEPYKNPN-LLRP-D-WGK----WIGALAVNEDWLVCGG-GPKLSLWHLRSS-ESTCVF-PIPA 247 (325)
T ss_pred cEEEEeccc-cceeEEeccccChh-hcCc-c-cCc----eeEEEeccCceEEecC-CCceeEEeccCC-CceEEE-eccc
Confidence 999999998 88887776543321 0000 0 000 1134444666777665 467999999976 333322 2344
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccc-cCeEEEEEccCCCeEEEec--CCceEEE
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS-SKLLHLAWHPTTNLIACAN--GNSLFFH 419 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~-~~v~~~~~spd~~~la~~~--~~~~~i~ 419 (421)
++..+.|..+ .+.+++.... .-|..++.+....... ...++.+|+-..-.+++.. .+.+-|+
T Consensus 248 ~v~~v~F~~d---------~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 248 RVHLVDFVDD---------CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceeEeeeecc---------eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 5566677665 5666665555 7786665555554443 3456666765544444333 5556554
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=132.97 Aligned_cols=288 Identities=14% Similarity=0.069 Sum_probs=200.6
Q ss_pred cceeeccCCCCceeeeecccccccceeEEeecccce---eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644 91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH---ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 166 (421)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~ 166 (421)
+.|.++.++...+|+++|.- +..+++|.++.... .++++.....|...|.||+|....++|.+| .+++|.+.|+
T Consensus 57 GCiNAlqFS~N~~~L~SGGD--D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGD--DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred cccceeeeccCCeEEeecCC--cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 46777888888999999876 45789999886432 356666645667899999999999999999 9999999999
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 246 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 246 (421)
+ ..+.+.+. .-....+.|+.+..+|.. +.|++.+.++.|.+||.+....... .+- +...
T Consensus 135 E-t~qsi~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~---~~~-----------~AN~ 193 (609)
T KOG4227|consen 135 E-TKQSIYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS---LVL-----------PANS 193 (609)
T ss_pred c-cceeeeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc---eee-----------ecCC
Confidence 9 55555443 112334589999999997 9999999999999999987542111 111 1122
Q ss_pred ccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644 247 IASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 324 (421)
Q Consensus 247 ~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~ 324 (421)
......+.|+|... +|++.+. +.+.+||.+.+..++....+..+... ++.. ..++-|+|+|..+++--.
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~------~~~~---~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ------ENTE---WMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc------cchh---hhheeeCCCCCeehhhhc
Confidence 44667889999654 5566666 88999999875555544332222110 0000 147899999998887766
Q ss_pred CCeEEEEecCCCCCceeEEecC-C-------CCccceeeecCCcccccccceeeeecccCc-ccCCC------C------
Q 014644 325 SNLLRIFSHGVGSAGGITVEAG-K-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS------S------ 383 (421)
Q Consensus 325 dg~i~iwd~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~------~------ 383 (421)
...-.+||+... ...+++.. . -.+.++.|..++ .+++|+.+-. .+|.. .
T Consensus 265 ~~~P~~~D~~S~--R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--------~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 265 GKCPLYFDFISQ--RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--------TVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred cCCCEEeeeecc--cceeEeccCCCCcceeeeeeeeeeeecce--------eeeccCcccceEEEecCCCccccCccccC
Confidence 555567787754 22333322 1 135666776662 5889998887 99921 1
Q ss_pred -------------CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 384 -------------GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 384 -------------~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+.+..+.+|..-+..+.|+|...+|++.+ .+.+.||.
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12234568888999999999999998777 67799985
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=4.3e-17 Score=145.81 Aligned_cols=226 Identities=16% Similarity=0.244 Sum_probs=159.0
Q ss_pred ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644 32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 111 (421)
Q Consensus 32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 111 (421)
-...|+.+.|-| -|...||.++.||.|+||.+..+.+.....
T Consensus 626 Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~------------------------------------- 667 (1012)
T KOG1445|consen 626 NGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEM------------------------------------- 667 (1012)
T ss_pred cCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccC-------------------------------------
Confidence 356799999932 367899999999999999988754221111
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
.+...+ ..|.+.|.++.|+| ....|+++ .|.+|++||+. +..... .+.+|++.
T Consensus 668 ----------------tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~-------~l~gHtdq 722 (1012)
T KOG1445|consen 668 ----------------TPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAKLYS-------RLVGHTDQ 722 (1012)
T ss_pred ----------------Ccceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehh-hhhhhh-------eeccCcCc
Confidence 344455 88999999999999 56678888 99999999999 444443 34899999
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-e---
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R--- 265 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~--- 265 (421)
|.+++|+|+| +.+++.+.||+|++|+.+++.. .+.++ +... ...-..+.|..||+++++ |
T Consensus 723 If~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg----~gpv------gtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 723 IFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEG----KGPV------GTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred eeEEEECCCC-cceeeeecCceEEEeCCCCCCC-----ccccC----CCCc------cCcceeEEEEecCcEEEEecccc
Confidence 9999999999 9999999999999999988653 22222 1110 123356889899998875 3
Q ss_pred -cCCeEEEEECCCC-CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeE
Q 014644 266 -DYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT 342 (421)
Q Consensus 266 -~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~ 342 (421)
+..+|.+||..+- ..++.+....-.... .--.+.+|. -++++|-.|..|++|.+-....-...
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lp 852 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLP 852 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCceeee
Confidence 2278999997642 233333322221110 112455564 45678889999999998876555666
Q ss_pred EecCCCCc
Q 014644 343 VEAGKNEN 350 (421)
Q Consensus 343 ~~~~~~~~ 350 (421)
+..|..++
T Consensus 853 l~~f~sp~ 860 (1012)
T KOG1445|consen 853 LAPFMSPV 860 (1012)
T ss_pred cccccCCC
Confidence 66665554
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3e-16 Score=145.82 Aligned_cols=217 Identities=13% Similarity=0.148 Sum_probs=145.7
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCC---CcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
.|...+...+| +|+|+.|+.++.+ ..|++||+.+++.+.+.
T Consensus 201 ~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~---------------------------------- 244 (429)
T PRK01742 201 RSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA---------------------------------- 244 (429)
T ss_pred cCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe----------------------------------
Confidence 56678899999 7899988887654 36899998776522221
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEE--eCCCCceeeeeeecCCCCC
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~ 183 (421)
.+ .+|. ..++|+|||+.|+.+ .++.+.|| |+. ++... .+
T Consensus 245 ------------------------~~-~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~-~l------- 287 (429)
T PRK01742 245 ------------------------SF-RGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPS-QL------- 287 (429)
T ss_pred ------------------------cC-CCcc---CceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeE-ee-------
Confidence 11 3332 357999999988875 57876666 554 33332 22
Q ss_pred CccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
..+...+.++.|+|+| +.|+.++ .++..+||++....... ..+.. .. ....|+|||++|
T Consensus 288 t~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~i 347 (429)
T PRK01742 288 TSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTL 347 (429)
T ss_pred ccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEE
Confidence 4456678889999999 7666554 67888888875432110 11111 22 357899999999
Q ss_pred EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC-CCCcee
Q 014644 263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-GSAGGI 341 (421)
Q Consensus 263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~-~~~~~~ 341 (421)
+..+...+.+||+.+ ++.......... .+++|+|||++|+.++.+|.+.+|++.. .+....
T Consensus 348 a~~~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 348 VMINGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred EEEcCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 877655567799975 543322111111 3678999999999999999888887632 235677
Q ss_pred EEecCCCCccceeeecC
Q 014644 342 TVEAGKNENRKPILQAA 358 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (421)
.+..|.+.+...+|+|.
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 78888888888888875
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.9e-14 Score=121.12 Aligned_cols=241 Identities=12% Similarity=0.188 Sum_probs=156.7
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
...++.+.| +.+...|..|+.||. ++++.+.... .... ..+ ...|.-.-++.+.-.+... ..
T Consensus 5 ~~ti~~~~~--Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~--~~~----------~~~IvEmLFSSSLvaiV~~--~q 66 (391)
T KOG2110|consen 5 KPTINFIGF--NQDSTLLSVGSKDGY-KIFSCSPFEK-CFSK--DTE----------GVSIVEMLFSSSLVAIVSI--KQ 66 (391)
T ss_pred Ccceeeeee--ccceeEEEccCCCce-eEEecCchHH-hhcc--cCC----------CeEEEEeecccceeEEEec--CC
Confidence 345667777 777888888888874 7777665431 1100 000 1112222222222222211 11
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
....++.+..... .-|.-. ...+|.++.++ -+.|+.+ .+ .|+|||++ ..+.+.+++ +.+.+...+.
T Consensus 67 pr~Lkv~~~Kk~~-~ICe~~----fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~-~MklLhTI~----t~~~n~~gl~ 133 (391)
T KOG2110|consen 67 PRKLKVVHFKKKT-TICEIF----FPTSILAVRMN--RKRLVVCLEE-SIYIYDIK-DMKLLHTIE----TTPPNPKGLC 133 (391)
T ss_pred CceEEEEEcccCc-eEEEEe----cCCceEEEEEc--cceEEEEEcc-cEEEEecc-cceeehhhh----ccCCCccceE
Confidence 1233333333220 011111 24567777776 4677777 44 49999999 667777663 2234556677
Q ss_pred EEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644 192 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 268 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~ 268 (421)
++++++.+ .+++.-+ ..|.|.+||+.+-+.. ..+.. |++.+.+++|+++|.+||++++ |
T Consensus 134 AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I~a-------------H~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 134 ALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTINA-------------HKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred eeccCCCC-ceEEecCCCCCceEEEEEcccceee----eEEEe-------------cCCceeEEEECCCCCEEEEeccCc
Confidence 77777776 6777543 4589999999875433 44445 5999999999999999999998 6
Q ss_pred e-EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 269 N-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 269 ~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+ ||++.+.. ++.+..|+.....+ .+.+++|+|++++|++.|..++|+|+.+...
T Consensus 196 TVIRVf~v~~-G~kl~eFRRG~~~~-------------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPE-GQKLYEFRRGTYPV-------------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCC-ccEeeeeeCCceee-------------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 5 89999986 88888887666543 2369999999999999999999999999865
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=3.1e-16 Score=133.17 Aligned_cols=291 Identities=16% Similarity=0.232 Sum_probs=182.6
Q ss_pred CCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCC
Q 014644 22 PEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 100 (421)
Q Consensus 22 ~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 100 (421)
...+|+..+ .|+.+||+|+| +|+|++||+|+.+|.|.+|....-... ......
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~--------------------- 106 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTEA--------------------- 106 (434)
T ss_pred eeEEEeecccCCcceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccchh---------------------
Confidence 356777776 58999999999 799999999999999999986641110 000000
Q ss_pred CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644 101 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 179 (421)
Q Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~ 179 (421)
......| ...+.+ .+|...|..++|+|++.+++++ .|.++++||+. .++...++
T Consensus 107 ------------~~~ke~w--------~v~k~l-r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~~--- 161 (434)
T KOG1009|consen 107 ------------DLNKEKW--------VVKKVL-RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAIL--- 161 (434)
T ss_pred ------------hhCccce--------EEEEEe-cccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEeec---
Confidence 0000011 333445 8899999999999999999999 99999999999 67777654
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch-hhhcc----ccccCCCcccc--cccccceeE
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRD----AAESHGSKSFF--TEIIASISD 252 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~----h~~~~~~~~~~--~~~~~~v~~ 252 (421)
.+|...+..++|.|-+ +++++-+.|...+.+.+...+...... ..+.. |.+....+ .+ ..-..-...
T Consensus 162 ----~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r-LfhDeTlksFFrR 235 (434)
T KOG1009|consen 162 ----DDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR-LFHDETLKSFFRR 235 (434)
T ss_pred ----cccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee-eeecCchhhhhhh
Confidence 7899999999999998 999999988877777765543221110 00000 00111100 01 011223457
Q ss_pred EEEcCCCCEEEEec-----CC-----eEEEEECCCCCcceeEEeeccCccc--ccccccCCCcceeeeEEEEc-CCCCEE
Q 014644 253 IKFANDGQHLLSRD-----YM-----NLKLWDIRMDSTPVATFKIHEHLRP--KLCDLYNNDSIFDKFECSVS-GDGLHF 319 (421)
Q Consensus 253 ~~~s~~~~~l~~~~-----~~-----~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s-p~~~~l 319 (421)
++|+|||.++++.. .+ ..++|+-..-.++...+........ +.+..+-.-..+......|+ |-+..+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 88999999998632 12 3355554332444444433332210 00111000000000011111 222333
Q ss_pred EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644 320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~ 377 (421)
+.++ ...|+|||.++.......-.-|...++.++|+++ +..|+..+.||-
T Consensus 316 aiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d-------g~~l~vSS~DGy 365 (434)
T KOG1009|consen 316 AIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD-------GSVLLVSSTDGF 365 (434)
T ss_pred EEee-cceEEEeccccccceEEEeeeeeeeecceeecCC-------CcEEEEeccCCc
Confidence 4444 5789999999876777888899999999999999 448999999987
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.1e-16 Score=143.34 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=140.0
Q ss_pred CCCCcceEEEeecCCCCEEEEE-c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC
Q 014644 135 HAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d 209 (421)
..|...+.+.+|+|||+.|+.. . + ..|++||+. +++...+. .+.++ ...++|+||| +.|+.++ .+
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~~l~-----~~~g~---~~~~~wSPDG-~~La~~~~~~ 269 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARKVVA-----SFRGH---NGAPAFSPDG-SRLAFASSKD 269 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceEEEe-----cCCCc---cCceeECCCC-CEEEEEEecC
Confidence 5677789999999999999875 3 2 469999998 33322221 12333 3468999999 7777654 67
Q ss_pred CeEEEE--ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEE
Q 014644 210 GFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 210 ~~v~iw--d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~ 285 (421)
|.+.|| |+..+.. ..+.. +...+....|+|||+.|+..+ . +...||++...+.....+
T Consensus 270 g~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 270 GVLNIYVMGANGGTP-----SQLTS-------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CcEEEEEEECCCCCe-----Eeecc-------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 876665 5554432 11111 245678899999999887654 3 778888875433333333
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
.+.. ...+|+|||++|+..+.++ +.+||+.++.. ....... ....+.|+|+ ++
T Consensus 332 -~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~--~~~~~~~sPd--G~--- 384 (429)
T PRK01742 332 -GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGST-EVLSSTF--LDESPSISPN--GI--- 384 (429)
T ss_pred -cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCC--CCCCceECCC--CC---
Confidence 2221 2468999999998887765 55699987732 2222222 3456789988 44
Q ss_pred cceeeeecccCc-ccC---C-CCCccccccccccCeEEEEEccCC
Q 014644 366 LSNLTRGLYRQA-HEN---S-SSGHHELSYNLSSKLLHLAWHPTT 405 (421)
Q Consensus 366 ~~~l~~g~~d~~-~iw---~-~~~~~~~~~~~~~~v~~~~~spd~ 405 (421)
.|+.++.++. .+| . .+........+...+..++|||-.
T Consensus 385 --~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 385 --MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred --EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 7888877777 666 2 344455555677788999999853
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=3.3e-15 Score=138.22 Aligned_cols=273 Identities=13% Similarity=0.024 Sum_probs=181.1
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCccCCCee
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~ 191 (421)
.+.+|++... ..+...+ .-...|.++.|+|. ..+++.| .+|.|.+||++..... ...+ ......|..++.
T Consensus 223 ~~~vW~~~~p--~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---s~~~~sh~~~v~ 295 (555)
T KOG1587|consen 223 VLLVWSLKNP--NTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---SALEVSHSEPVT 295 (555)
T ss_pred eEEEEecCCC--CCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---ccccccCCcCeE
Confidence 5778988776 2444444 34568999999994 5566667 9999999999844432 1111 112356899999
Q ss_pred EEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-C
Q 014644 192 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-M 268 (421)
Q Consensus 192 ~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~ 268 (421)
.+.|..+. +.-+++++.||.|..|+++.-.... ..... +.......-......+++++|.+. -..++.|++ |
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~---e~~~~--~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV---EGLLL--ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccch---hhccc--ccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 99997764 1348999999999999887643210 11110 000000000111346889999984 456677877 8
Q ss_pred eEEEEECCC-CCcc------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 269 NLKLWDIRM-DSTP------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 269 ~i~i~d~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
.|.--.... .... ...+..|.+.+ ..+.++|=+..++..+.|-+++||.-........
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v---------------~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPV---------------YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcce---------------EeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence 877633321 1112 22233333333 7889998665555444499999999874446677
Q ss_pred EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC----CCCccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644 342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNS 415 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~ 415 (421)
.+..+.+.+..++|+|.++. .|+++..+|. .+|+ ..+............+.+.|++.|+.|++|. .|.
T Consensus 436 ~~~~~~~~v~~vaWSptrpa------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPA------VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred hhhhccceeeeeEEcCcCce------EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc
Confidence 77788888999999999754 5899999999 9993 3344444444466678889999999999999 455
Q ss_pred eEEEe
Q 014644 416 LFFHY 420 (421)
Q Consensus 416 ~~i~~ 420 (421)
+.+|.
T Consensus 510 ~~~~~ 514 (555)
T KOG1587|consen 510 THILK 514 (555)
T ss_pred EEEEE
Confidence 88875
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.4e-15 Score=142.16 Aligned_cols=244 Identities=13% Similarity=0.153 Sum_probs=156.4
Q ss_pred cceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCc----eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644 139 FNINSISNNS--DCETFVSA-DDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 211 (421)
Q Consensus 139 ~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~ 211 (421)
..|+.+.+-. |..++++| .||.|+||+--... +++.-...-...+.+-.+.=.-+.|.... .+|++++.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeE
Confidence 3466666643 45678888 99999999754232 22222210001111111222345677765 67777777889
Q ss_pred EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEe-cCCeEEEEECCCCCc--ceeEEee
Q 014644 212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDST--PVATFKI 287 (421)
Q Consensus 212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-~~~~i~i~d~~~~~~--~~~~~~~ 287 (421)
|+|||......+ ..+.. +....++++.-+- .|..+++| .||.|++||.+.... .+..++.
T Consensus 1189 IRIWDa~~E~~~----~diP~------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVV----ADIPY------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred EEEEecccceeE----eeccc------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 999999876543 11111 0134566665443 46888888 459999999987433 6777887
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCCCE-EEEeeCCCeEEEEecCCC-CCceeEEecCC--C-CccceeeecCCccc
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVG-SAGGITVEAGK--N-ENRKPILQAAPRAR 362 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 362 (421)
|....+ |..+.+.++|-- |++|+.||.|++||++.. ......+..|. + ..+++..+.+
T Consensus 1253 h~~~~~-------------Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h---- 1315 (1387)
T KOG1517|consen 1253 HNDVEP-------------IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH---- 1315 (1387)
T ss_pred cCCccc-------------ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC----
Confidence 876531 257888886544 999999999999999984 22233444444 3 3677777776
Q ss_pred ccccceeeeecccCc-ccCCC-CCccccccc-------cccCeEEEEEccCCCeEEEecCCc-eEEEe
Q 014644 363 RSSLSNLTRGLYRQA-HENSS-SGHHELSYN-------LSSKLLHLAWHPTTNLIACANGNS-LFFHY 420 (421)
Q Consensus 363 ~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~-------~~~~v~~~~~spd~~~la~~~~~~-~~i~~ 420 (421)
...+|+|+. +. +||+. ++.+...+. -...+.+++|||-.-+||+|+.|+ +.||.
T Consensus 1316 ---apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1316 ---APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ---CCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 338899998 66 99944 333332221 134678999999999999999554 77764
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=3.3e-14 Score=128.18 Aligned_cols=271 Identities=11% Similarity=0.113 Sum_probs=159.2
Q ss_pred cccccccccccEEEEEEEEcCCCCeEEEE-eCCCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 102 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~-s~d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 102 (421)
..++.+.+.+....+.+ +|++++|+++ ..++.|.+|+++. +.+.........+. ...+.+++++
T Consensus 26 ~~~~~~~~~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~------------p~~i~~~~~g 91 (330)
T PRK11028 26 TLLQVVDVPGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS------------PTHISTDHQG 91 (330)
T ss_pred eeeeEEecCCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC------------ceEEEECCCC
Confidence 34455555566778888 7899887665 4588999999973 44433332222221 2234444555
Q ss_pred eeeeecccccccceeEEeeccc-ceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecC
Q 014644 103 AHGYHLEWTENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK 179 (421)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~ 179 (421)
.++...... .+.+.+|+++.. ...+.+..+ . +......++++|++++++++ .++.|.+||+++.+.+..... .
T Consensus 92 ~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~-~ 167 (330)
T PRK11028 92 RFLFSASYN-ANCVSVSPLDKDGIPVAPIQII-E-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP-A 167 (330)
T ss_pred CEEEEEEcC-CCeEEEEEECCCCCCCCceeec-c-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC-C
Confidence 555544432 346778887632 111233333 2 23446788999999988764 789999999984333211000 0
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEc-CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (421)
..... .......+.|+|++ ++++++.. +++|.+||+.......+....+..+ +.. .. +......+.++|+
T Consensus 168 ~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~---p~~---~~-~~~~~~~i~~~pd 238 (330)
T PRK11028 168 EVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM---PAD---FS-DTRWAADIHITPD 238 (330)
T ss_pred ceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC---CCc---CC-CCccceeEEECCC
Confidence 00111 12345789999999 88877765 8999999997421000111111110 000 00 1123446899999
Q ss_pred CCEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCC
Q 014644 259 GQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 335 (421)
Q Consensus 259 ~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~ 335 (421)
|++++++.. +.|.+|++...+... .+..+.... . ....+.++|+|++|+++.. +++|.+|+++.
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~-~-----------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE-T-----------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc-c-----------cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999988743 899999997533222 222221100 0 0157899999999998775 89999998863
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=2.7e-13 Score=126.72 Aligned_cols=318 Identities=20% Similarity=0.276 Sum_probs=210.4
Q ss_pred ccEEEEEEEEcCCCC-eEEEEeC-CCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 34 EKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~-~l~t~s~-d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
..+..+.+. .+++. .++..+. |+.+++|+... ...... ...+.. .+..+.+.+....+..+..
T Consensus 110 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~------------~v~~~~~~~~~~~~~~~~~ 175 (466)
T COG2319 110 SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-LEGHSE------------SVTSLAFSPDGKLLASGSS 175 (466)
T ss_pred CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE-EecCcc------------cEEEEEECCCCCEEEecCC
Confidence 367888886 67776 5555455 99999999987 332211 122333 3334555555554444432
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
.+..+++|+.... ..+..+ .+|...|.+++|+|++. .++++ .|+.|++||.. .+..... .+.+|..
T Consensus 176 -~~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~ 243 (466)
T COG2319 176 -LDGTIKLWDLRTG---KPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSD 243 (466)
T ss_pred -CCCceEEEEcCCC---ceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCc
Confidence 3668899999875 677777 78999999999999998 66665 89999999887 4444431 1266766
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 267 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (421)
.. ...|+|++ ..+++++.|+.+++|+++..... ...+.. |...+.++.|.|++..+++++.
T Consensus 244 ~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 244 SV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSG-------------HSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred ce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEec-------------CCccEEEEEECCCCCEEEEeeCC
Confidence 64 33899998 88999999999999999875431 111122 3678999999998888887654
Q ss_pred CeEEEEECCCCCcceeEEe--eccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEe
Q 014644 268 MNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVE 344 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~ 344 (421)
+.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+.+.+|++.... ......
T Consensus 306 ~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~ 368 (466)
T COG2319 306 GTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLE 368 (466)
T ss_pred CcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEec
Confidence 7799999876 44444443 444322 567773343455555 678999999998774 222222
Q ss_pred cCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc-cccccccc-cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-~~~~~~~~-~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.. ..+..+.+.+ . .. ....+..++. .+|..... ........ ..+....+.+++..++.++ .+.+.+|.
T Consensus 369 ~~-~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 369 GH-SNVLSVSFSP-D-GR-----VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-ceEEEEEECC-C-CC-----EEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 22 2256666665 3 33 3334677777 89933322 22222222 7899999999999999866 56688885
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.5e-15 Score=125.33 Aligned_cols=214 Identities=12% Similarity=0.116 Sum_probs=152.7
Q ss_pred CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644 137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
-.++|+|.+|++|.+.+|.+ ....|.||... +.+..... .++..|...|++++|+|.. +.|++++.|..-++|
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~-~~~~w~~~----htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSML-GADLWEPA----HTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW 82 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEec-CCCCceec----eehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence 35689999999999999999 88899999988 44434333 3568899999999999998 999999999999999
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc-ee--EEeeccCc
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP-VA--TFKIHEHL 291 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~-~~--~~~~~~~~ 291 (421)
....+......+.+++. +...+++.|+|.++.+++|+. ..|.||-++.+..- +. .-+.....
T Consensus 83 ~~~~~~~WkptlvLlRi--------------NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI--------------NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred ccCCCCeeccceeEEEe--------------ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 98665444333333333 778999999999999999987 88999988642221 11 11112222
Q ss_pred ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
|++++|+|++-+|++|+.|+..|++..--. .+.. .|..
T Consensus 149 ---------------v~sldWhpnnVLlaaGs~D~k~rVfSayIK-----~Vde----------kpap------------ 186 (361)
T KOG1523|consen 149 ---------------VTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-----GVDE----------KPAP------------ 186 (361)
T ss_pred ---------------eeeeeccCCcceecccccCcceeEEEEeee-----cccc----------CCCC------------
Confidence 279999999999999999999999874311 0000 0000
Q ss_pred ecccCcccCC----CCCccccccccccCeEEEEEccCCCeEEEecCC-ceEE
Q 014644 372 GLYRQAHENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF 418 (421)
Q Consensus 372 g~~d~~~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i 418 (421)
..|. .++++.+.....+.|..+.|+|+|+.||-.+.| .+.+
T Consensus 187 ------~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 187 ------TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred ------CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 1221 122333333445789999999999999988744 4544
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.4e-16 Score=137.47 Aligned_cols=262 Identities=12% Similarity=0.125 Sum_probs=198.3
Q ss_pred EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccce
Q 014644 37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 116 (421)
Q Consensus 37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (421)
..+.+ +.+|.+|+.|+.-|.|-.+|+.++.+.+-
T Consensus 133 Y~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~E-------------------------------------------- 166 (545)
T KOG1272|consen 133 YHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------------------------------------------- 166 (545)
T ss_pred eeeee--cCCccEEEecCCccceeeeecccceeeee--------------------------------------------
Confidence 56777 68899999999999999999998763321
Q ss_pred eEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644 117 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 196 (421)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 196 (421)
..-...|.++.|..+.+++|.+....+.+||-. +.++. ++ ..| ..|..+.|.
T Consensus 167 ------------------i~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH-Cl-------k~~-~~v~rLeFL 218 (545)
T KOG1272|consen 167 ------------------INVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH-CL-------KRH-IRVARLEFL 218 (545)
T ss_pred ------------------eehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe-eh-------hhc-Cchhhhccc
Confidence 112346888899888999999988899999987 44433 32 223 568899999
Q ss_pred cCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEEC
Q 014644 197 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI 275 (421)
Q Consensus 197 p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~ 275 (421)
|.. .+|++++..|.++.-|+..|+.. ..+.. ..+.+..++-+|-+-.+-.|.. |+|.+|..
T Consensus 219 PyH-fLL~~~~~~G~L~Y~DVS~GklV----a~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 219 PYH-FLLVAASEAGFLKYQDVSTGKLV----ASIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred chh-heeeecccCCceEEEeechhhhh----HHHHc-------------cCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 998 88999999999999999998765 22222 1567888888898888888866 99999999
Q ss_pred CCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceee
Q 014644 276 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 355 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (421)
.. .+++..+..|.+++ .++++.++|+|++|.+.|..++|||++...+ ..++.. ..+...+.+
T Consensus 281 ~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~ 342 (545)
T KOG1272|consen 281 NS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSL 342 (545)
T ss_pred CC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeeccccc-cceeec-CCCcccccc
Confidence 86 88888888888876 7999999999999999999999999998743 333322 344555555
Q ss_pred ecCCcccccccceeeeecccCcccCCC-------CCccccccccccCeEEEEEccCCCeEEEecCCce
Q 014644 356 QAAPRARRSSLSNLTRGLYRQAHENSS-------SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 416 (421)
Q Consensus 356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~-------~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~ 416 (421)
+.. .+||.+..+-..||.. .+.......+.+.|.++.|.|-..+|-+|-.+++
T Consensus 343 Sqk--------glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 343 SQK--------GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ccc--------cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 543 3678777777799911 1222222344568999999999988888876553
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.8e-16 Score=138.06 Aligned_cols=251 Identities=12% Similarity=0.081 Sum_probs=171.4
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC---C-ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI---S-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~---~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
..|...|+.++|.|....|+++ .|++|++|++.. . ...+..+ .++.+|.++|.|++..+++ ..+++|+.|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi----~tfraH~gPVl~v~v~~n~-~~~ysgg~D 365 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPI----LTFRAHEGPVLCVVVPSNG-EHCYSGGID 365 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeee----EEEecccCceEEEEecCCc-eEEEeeccC
Confidence 6789999999999999999999 999999999932 1 1111111 3678999999999999999 999999999
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~ 288 (421)
|+|+.|++.... ..++. .+.......+.+|.+.++.+++|+....|++++. |++++|+... ..+ ..+...
T Consensus 366 g~I~~w~~p~n~------dp~ds-~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~-~~~-~~f~~~ 436 (577)
T KOG0642|consen 366 GTIRCWNLPPNQ------DPDDS-YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE-ESP-CTFGEP 436 (577)
T ss_pred ceeeeeccCCCC------Ccccc-cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC-cCc-cccCCc
Confidence 999999887322 12222 2223344457888999999999999888988864 9999999864 444 333332
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEEecC-------CCCccceeeecCCc
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAG-------KNENRKPILQAAPR 360 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 360 (421)
...... .++.+.... .++++...-+.--+.++... .....+... ...+..+...|.
T Consensus 437 ~e~g~P-------------lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~-- 500 (577)
T KOG0642|consen 437 KEHGYP-------------LSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPT-- 500 (577)
T ss_pred cccCCc-------------ceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCC--
Confidence 222111 345544322 12222222233334444443 112222211 123445555555
Q ss_pred ccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 361 ARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 361 ~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
....+++..|+. +++ ..+..+.....|...|+++++-|.|.+|++++ ++.+++|+
T Consensus 501 -----~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 501 -----ADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred -----CCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 347788888888 888 55677777788999999999999999999999 56688885
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-14 Score=139.60 Aligned_cols=231 Identities=15% Similarity=0.194 Sum_probs=151.4
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+|+..|+.++-+ ++.+.+|+|||.||+||+|+...-.... +
T Consensus 1045 ~Ehs~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~------------------------------ 1086 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-------G------------------------------ 1086 (1431)
T ss_pred hhccccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-------c------------------------------
Confidence 3678888888884 4557999999999999999987632000 0
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCCccC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~ 187 (421)
..++..++ .--..++.++...+.++.+|.+ .||.|++.+++.. ............+.....
T Consensus 1087 ----------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g 1149 (1431)
T KOG1240|consen 1087 ----------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG 1149 (1431)
T ss_pred ----------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCC
Confidence 00333444 3345678889999999999999 9999999999841 111111111112223223
Q ss_pred CCeeEEEEecCCCC-eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 188 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 188 ~~v~~~~~~p~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
..|..-+|...... .++.+..-+.|..||+++.... |.. .. .-..+.|++++.+|.+.+++.|+
T Consensus 1150 ~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~------w~l-k~--------~~~hG~vTSi~idp~~~WlviGt 1214 (1431)
T KOG1240|consen 1150 VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA------WRL-KN--------QLRHGLVTSIVIDPWCNWLVIGT 1214 (1431)
T ss_pred ceEEeecccccccceeEEEEEeccceEEecchhhhhH------Hhh-hc--------CccccceeEEEecCCceEEEEec
Confidence 33344455444324 7888888899999999986422 221 00 11147899999999999999998
Q ss_pred C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---CCCEEEEe-e-CCCeEEEEecCCCCCce
Q 014644 267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATG-S-YSNLLRIFSHGVGSAGG 340 (421)
Q Consensus 267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~~-s-~dg~i~iwd~~~~~~~~ 340 (421)
. |.+.+||++- +.++..+..+... ++..+..+| .....+++ + ..+.|.+|++.++ ...
T Consensus 1215 s~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~ 1278 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRF-RVPILSWEHPARA--------------PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQ 1278 (1431)
T ss_pred CCceEEEEEeec-CceeecccCcccC--------------CcceEEeeccCCCCceEEEecccCCCceeeeecccC-cce
Confidence 7 9999999995 8877776543321 114555554 33454444 4 4788999999998 555
Q ss_pred eEEecC
Q 014644 341 ITVEAG 346 (421)
Q Consensus 341 ~~~~~~ 346 (421)
.++...
T Consensus 1279 ~vl~~s 1284 (1431)
T KOG1240|consen 1279 TVLWAS 1284 (1431)
T ss_pred EEEEcC
Confidence 555444
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=1.4e-15 Score=123.87 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=153.5
Q ss_pred CCCCcceEEEeecCCCC-----EEEEEcCCcEEEEeCCCCceeeeee-ecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644 135 HAHDFNINSISNNSDCE-----TFVSADDLRINLWNLEISDQCFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 208 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~-----~l~s~~d~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 208 (421)
..|..+++.+.|.|+.. +||++.| .+|+|.+...+..+... -+...+-..+.+++++..|+.-.+++|.++|-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 47999999999999763 5555544 79999987323222211 01111224567899999999988899999999
Q ss_pred CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEe-cCCeEEEEECCCCCcceeEEe
Q 014644 209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR-DYMNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~i~d~~~~~~~~~~~~ 286 (421)
|.+..|||+..+... .++ ..+-.|..+|..++|...+.-+ |+. .||.+|+||++.-....-.++
T Consensus 172 DTTCTiWdie~~~~~--~vk------------TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSG--TVK------------TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred cCeEEEEEEeecccc--cee------------eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 999999999986220 001 1123458899999999976644 444 459999999986222222333
Q ss_pred eccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCC-CeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
.... ...+ ..++|++ |-+++|+-..| ..|.|.|++........|++|.+.|+.++|.|..
T Consensus 238 ~p~~-~~pL------------lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 238 DPSP-STPL------------LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred CCCC-CCcc------------eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-----
Confidence 3321 1111 5889998 46778876554 5799999998878899999999999999999983
Q ss_pred ccceeeeecccCc-ccCCCC
Q 014644 365 SLSNLTRGLYRQA-HENSSS 383 (421)
Q Consensus 365 ~~~~l~~g~~d~~-~iw~~~ 383 (421)
...|+++++|.. -+|+..
T Consensus 300 -~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 300 -SSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -CceeeecCCcceEEEEecc
Confidence 247999999999 999544
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=134.40 Aligned_cols=237 Identities=15% Similarity=0.146 Sum_probs=155.8
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||++-|++++| +.+|.+|++||.|-.+.|||.-..+
T Consensus 47 ~GH~GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~K----------------------------------------- 83 (758)
T KOG1310|consen 47 TGHTGCVNCLEW--NADGELLASGSDDTRLIVWDPFEYK----------------------------------------- 83 (758)
T ss_pred ccccceecceee--cCCCCEEeecCCcceEEeecchhcc-----------------------------------------
Confidence 489999999999 8999999999999999999976533
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceee---eeeecCCCCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCF---NIVDMKPSNM 183 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~---~~~~~~~~~~ 183 (421)
++..+..+|...|+++.|-| +.+++++| .|..|+++|+....+-- ... ....-.
T Consensus 84 -------------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~-~~~~~~ 143 (758)
T KOG1310|consen 84 -------------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGME-ETTRCW 143 (758)
T ss_pred -------------------eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCcc-chhhhh
Confidence 12222379999999999988 46678888 99999999997311100 000 000122
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch----hhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----RILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
.-|...|.-++-.|++++.+.+++.||+|+-+|++....+.... ..... ...--...++.++|..
T Consensus 144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-----------~~~lielk~ltisp~r 212 (758)
T KOG1310|consen 144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-----------NPQLIELKCLTISPSR 212 (758)
T ss_pred hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh-----------chhhheeeeeeecCCC
Confidence 55888899999999999999999999999999999855442111 00010 0011356789999964
Q ss_pred -CEEEEec-CCeEEEEECCCCCcc-----------------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE
Q 014644 260 -QHLLSRD-YMNLKLWDIRMDSTP-----------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 320 (421)
Q Consensus 260 -~~l~~~~-~~~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~ 320 (421)
.+|+.|+ +.-.++||.+...+. +..+.... . ......-...+...+-+.|+|+|.-|+
T Consensus 213 p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-l--kn~~gn~~~~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-L--KNSQGNLDRYITCCTYVTFNPNGTELL 289 (758)
T ss_pred CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-c--cCcccccccceeeeEEEEECCCCcEEE
Confidence 4666765 488999995431111 11111000 0 000000011111235679999998877
Q ss_pred EeeCCCeEEEEecCCCCCceeEE
Q 014644 321 TGSYSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 321 ~~s~dg~i~iwd~~~~~~~~~~~ 343 (421)
..-..-.|+++|+..++.....+
T Consensus 290 vs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred EeeCCeEEEEEeecCCCCceeec
Confidence 76666789999999875444433
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=132.15 Aligned_cols=181 Identities=16% Similarity=0.254 Sum_probs=139.4
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|..+|.+-+| +++|.-|++++.||.|++|.-...
T Consensus 102 AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsGM------------------------------------------- 136 (737)
T KOG1524|consen 102 AHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSRSGM------------------------------------------- 136 (737)
T ss_pred hhhhhhhhccc--CCCCceeeeecCCceEEEEeccch-------------------------------------------
Confidence 58889999999 899999999999999999985431
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
...++ .....+|+|++|.|+...++.+..+.+.+=.+..+.+.+ ..+.|.+-|
T Consensus 137 ------------------LRStl-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGii 189 (737)
T KOG1524|consen 137 ------------------LRSTV-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLV 189 (737)
T ss_pred ------------------HHHHH-hhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEE
Confidence 11112 345678999999999999998866677776666444444 347899999
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeE
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 270 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i 270 (421)
.++.|+|.. .++++|+.|-..++||-.... .|.. ..|+.+|++++|.|+ +.++.++.+++
T Consensus 190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~ 249 (737)
T KOG1524|consen 190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTA 249 (737)
T ss_pred EEeecCccc-cceeecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeee
Confidence 999999998 999999999999999976532 2222 234779999999999 77777776777
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 330 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i 330 (421)
++=..+. +. ++.++||+||..++.|...|.+.+
T Consensus 250 R~~~p~~------------GS---------------ifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 250 RFSSPRV------------GS---------------IFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eecCCCc------------cc---------------eEEEEEcCCCceeeccccCceEEE
Confidence 7322221 11 168999999999999999888765
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=4.9e-15 Score=122.36 Aligned_cols=244 Identities=11% Similarity=0.082 Sum_probs=168.5
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
.++|+|.+| +++...+|++...+.|.||......+
T Consensus 10 ~~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADL------------------------------------------- 44 (361)
T ss_pred cCceeeeee--cCCCceEEeccCCceEEEEEecCCCC-------------------------------------------
Confidence 478999999 89999999999999999999776431
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
| +...++ ..|...|+.+.|+|..+.|+++ .|..-++|....++.-..++ .+..+....+
T Consensus 45 ------w--------~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt 104 (361)
T KOG1523|consen 45 ------W--------EPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAAT 104 (361)
T ss_pred ------c--------eeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEecccee
Confidence 1 444556 8899999999999999999999 99999999995344333332 3456788999
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i 270 (421)
++.|+|.+ +.|++|+....|.+|-+....-.--..++- +-+.+.|.+++|+|++-+|++|+ |+..
T Consensus 105 ~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhik-------------kPirStv~sldWhpnnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 105 CVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIK-------------KPIRSTVTSLDWHPNNVLLAAGSTDGKC 170 (361)
T ss_pred eEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhC-------------CccccceeeeeccCCcceecccccCcce
Confidence 99999999 999999999999999887643210000111 11257899999999999999886 5888
Q ss_pred EEEECCCCCcceeEEeeccCccc-----ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRP-----KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
++|..-- + .+..-........ .++..+. ..--.+.++.|+|+|..|+-.+.|..+.+=|.....+....+..
T Consensus 171 rVfSayI-K-~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 171 RVFSAYI-K-GVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred eEEEEee-e-ccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 8886521 0 0000000110000 0100010 00113479999999999999999999999987765433444333
Q ss_pred CCCCccceeeecC
Q 014644 346 GKNENRKPILQAA 358 (421)
Q Consensus 346 ~~~~~~~~~~~~~ 358 (421)
..-|..++.|-..
T Consensus 248 ~~lP~ls~~~ise 260 (361)
T KOG1523|consen 248 AQLPLLSVSWISE 260 (361)
T ss_pred ccCCceeeEeecC
Confidence 3355555555433
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=7.2e-15 Score=136.02 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=176.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
+.-...|.+++|+| .+..+||.|+.+|.|-+||+..+.....
T Consensus 239 ~~~~s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~------------------------------------- 280 (555)
T KOG1587|consen 239 LESPSEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPP------------------------------------- 280 (555)
T ss_pred EecCCceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCC-------------------------------------
Confidence 34467899999974 5688999999999999999988652110
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC----
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN---- 182 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~---- 182 (421)
.++......|...|..+.|..+. .-++++ .||.|..|+++.-.............
T Consensus 281 ------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~ 342 (555)
T KOG1587|consen 281 ------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQ 342 (555)
T ss_pred ------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccc
Confidence 00011115788999999996543 447777 99999999887322222221111000
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
-......+++++|.|..+..++.|+..|.|.--+....+.... ..+.. ...+..|.++|..+.++|-+..+
T Consensus 343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccce
Confidence 0112346889999999889999999999987644333221110 11121 11245568999999999976654
Q ss_pred -EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCc-
Q 014644 263 -LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAG- 339 (421)
Q Consensus 263 -~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~- 339 (421)
++++|.+++||.......++..+..+...+ ++++|||.. ..++++..||.|.|||+......
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred eeeeccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 455678999999873356665555544432 799999974 56778888999999999865322
Q ss_pred eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC
Q 014644 340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 383 (421)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~ 383 (421)
......+......+.+++. ++ .|+.|...|. .++...
T Consensus 479 v~s~~~~~~~l~~~~~s~~--g~-----~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPN--GK-----LLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccccccceeecCCC--Cc-----EEEEecCCCcEEEEEcC
Confidence 3333334445556666665 44 8999999998 777443
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.2e-13 Score=111.69 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=130.9
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 194 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (421)
.+.+||.... .++.++ .-..+|.++.+.+ ..|+..-.++|+||....+-+..+.++.. . ....+.+++
T Consensus 76 kviIWDD~k~---~~i~el--~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~ 143 (346)
T KOG2111|consen 76 KVIIWDDLKE---RCIIEL--SFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLC 143 (346)
T ss_pred eEEEEecccC---cEEEEE--EeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeec
Confidence 6789996655 777776 5677899999974 56777778899999987555566555321 1 112234433
Q ss_pred EecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce-EE
Q 014644 195 FHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LK 271 (421)
Q Consensus 195 ~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~-i~ 271 (421)
-+.+. .+||.-+ .-|.|+|-|+...... ...+...|.+.|.+++.+-+|.++|+++. |+ ||
T Consensus 144 ~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 144 PTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred CCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 33332 4555544 5589999998864321 11224556999999999999999999987 65 89
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
|||..+ ++.+..++...... ++.+++|||++.+|++.|+.|+++|+.++..
T Consensus 208 IFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999997 88888887554432 3479999999999999999999999999865
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=132.76 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=197.8
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|.+-|+.|.| +..|..|++||.|..|.+||+..+..+......|...|.-..|.+..+.- .+...
T Consensus 140 ~H~GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~----------ti~~~-- 205 (559)
T KOG1334|consen 140 KHKGCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR----------TIVTS-- 205 (559)
T ss_pred CCCCccceeee--cccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc----------Cceec--
Confidence 69999999999 78899999999999999999988774433333343434322222221111 01110
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
..++.+++-.+......+..+.+ ..|.++|.-++.-|+.. -|.++ .|+.+.-.|++... ....+-.+ ..+..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr----~~~~~ 279 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCR----EADEK 279 (559)
T ss_pred cccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeeccCC-ccceeeee----ccCCc
Confidence 11334444433222111222333 68999999999999754 45555 99999999988432 22111111 22222
Q ss_pred ---CeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc--ccchhhhccccccCCCcccccccccceeEEEEcCCCC-EE
Q 014644 189 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL 262 (421)
Q Consensus 189 ---~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 262 (421)
....++.+|...+.+++++.|..+++||.+.-... ...+..+-. ..........|++++|+.++. +|
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-------~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-------HHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-------ccccccCcccceeEEecCCcccee
Confidence 56788999988679999999999999998864321 000111111 111122345799999996654 55
Q ss_pred EEecCCeEEEEECCC-CC----------cceeE-EeeccCcccccccccCCCcceeeeEE-EEcCCCCEEEEeeCCCeEE
Q 014644 263 LSRDYMNLKLWDIRM-DS----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLR 329 (421)
Q Consensus 263 ~~~~~~~i~i~d~~~-~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sp~~~~l~~~s~dg~i~ 329 (421)
++-.+-.|+++.-.. .+ ..++. +++|..... | -.+ -|-|...|+++||.-|.|.
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccCccceEEecCccceEE
Confidence 555667899995432 12 22333 677766432 1 344 4678899999999999999
Q ss_pred EEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644 330 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 382 (421)
Q Consensus 330 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~ 382 (421)
||+-.++ +.+..+.+...-|+++.-.|. .+.||+.+-|.. +||+.
T Consensus 420 iW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 420 IWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence 9998887 778888888888899988888 569999999999 99943
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=122.57 Aligned_cols=289 Identities=8% Similarity=0.049 Sum_probs=170.0
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 110 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 110 (421)
.|...|+++.| ....+|.+|..-|.|++|++++..-.+.....+...+..+ ..++.++.
T Consensus 12 p~~~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~l------------------q~~p~d~l 70 (323)
T KOG0322|consen 12 PHSSSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNL------------------QSIPNDSL 70 (323)
T ss_pred cccchheehhh---ccchhhhcccccceEEEEEeecCccchhhhhhccceeece------------------eecCCcch
Confidence 78899999999 4455699999999999999998763222221122211111 11111122
Q ss_pred cc---ccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-----CC---EEEEE-cCCc--EEEEeCCCCceeeeee
Q 014644 111 TE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CE---TFVSA-DDLR--INLWNLEISDQCFNIV 176 (421)
Q Consensus 111 ~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~---~l~s~-~d~~--i~lwd~~~~~~~~~~~ 176 (421)
++ +..+.+|++. --... ..|+-.++++-|.+- ++ .++.. ..+. +.+-|.. ....+.+.
T Consensus 71 ~tqgRd~~L~lw~ia------~s~~i-~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g-~~tqv~i~ 142 (323)
T KOG0322|consen 71 DTQGRDPLLILWTIA------YSAFI-SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG-DTTQVQIA 142 (323)
T ss_pred hhcCCCceEEEEEcc------CcceE-EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC-ccceeEcc
Confidence 11 2244555431 11122 345555666666431 11 11211 1111 1111211 00111111
Q ss_pred ecCCCCCCccCCCeeEEEEecC-CC-CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE
Q 014644 177 DMKPSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 254 (421)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~p~-~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~ 254 (421)
+..-.+..+.+.+..+.-+ +. -++++|.++|.+.+||+..+... ++. ............|..+|.++.
T Consensus 143 ---dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------~~~-~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 143 ---DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------IQL-PQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred ---CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------ecc-ccccccccchhhccCcceeee
Confidence 1112334566777765433 21 24567779999999999987432 222 122222333566789999999
Q ss_pred EcCCCCEEEEecC-CeEEEEECCCC-Cc-cee-EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644 255 FANDGQHLLSRDY-MNLKLWDIRMD-ST-PVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 330 (421)
Q Consensus 255 ~s~~~~~l~~~~~-~~i~i~d~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i 330 (421)
+.+.-..=++|+. ..+..|.++-. +. ++. ....... ++..+.+-||++.+|+++.|+.|||
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp---------------Gv~gvrIRpD~KIlATAGWD~RiRV 277 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP---------------GVSGVRIRPDGKILATAGWDHRIRV 277 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccceEEecCC---------------CccceEEccCCcEEeecccCCcEEE
Confidence 9875433344443 67888887642 11 111 1111111 1257889999999999999999999
Q ss_pred EecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644 331 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 381 (421)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~ 381 (421)
|..++. +...++..|.+.+++++|+|+ .+.+|.++.|+. .+|+
T Consensus 278 yswrtl-~pLAVLkyHsagvn~vAfspd-------~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 278 YSWRTL-NPLAVLKYHSAGVNAVAFSPD-------CELMAAASKDARISLWK 321 (323)
T ss_pred EEeccC-CchhhhhhhhcceeEEEeCCC-------CchhhhccCCceEEeee
Confidence 999998 778899999999999999999 448999999999 8883
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2e-15 Score=133.16 Aligned_cols=183 Identities=17% Similarity=0.223 Sum_probs=128.3
Q ss_pred eeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEEEEc
Q 014644 131 KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSS 208 (421)
Q Consensus 131 ~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~ 208 (421)
+.+ .||++.|++|.|+.+|.+|++| +|-.+.|||.- ..+++..+. .+|...|.++.|-|.. ..++++|..
T Consensus 44 ~eL-~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~------TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 44 AEL-TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSIS------TGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred hhh-ccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeee------cccccceeEEeeeccCCCeEEEeccC
Confidence 445 8999999999999999999999 99999999998 555555553 7899999999999953 368889999
Q ss_pred CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644 209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~~~~ 286 (421)
|..|+++|+...+... .+. -.......+..|...|..++-.|++ ..+.++++ |+|+.+|++.+..+-....
T Consensus 116 Dk~i~lfdl~~~~~~~-----~d~--~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGG-----MDH--GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred cceEEEEecccccccc-----ccc--CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence 9999999998532110 000 0001111235568899999999998 45556665 9999999985222222111
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecC
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~ 334 (421)
.+...+ .+..+. ....++.++|. ..+|++|+.|-..++||.+
T Consensus 189 ~~~~l~-----ny~~~l-ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 189 CPSILV-----NYNPQL-IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccHHHH-----Hhchhh-heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111111 111111 12357899995 6679999999999999964
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.5e-14 Score=130.40 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=164.5
Q ss_pred cccccEEEEEEEEcCCC-CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccccc--ccceeeccCCCCceeeee
Q 014644 31 EIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA--EKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~-~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~ 107 (421)
+|..+++.+.+.+++.. .++.+++.||+|++||...+++.+....+.+. ..+.+.+. +..........+...+..
T Consensus 55 ~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v--~~~~~~~~~a~~s~~~~~s~~~~~~~~~ 132 (792)
T KOG1963|consen 55 DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV--HALVYKPAQADISANVYVSVEDYSILTT 132 (792)
T ss_pred cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce--eEEEechhHhCccceeEeecccceeeee
Confidence 68899999999765554 68889999999999999999865555433322 21111100 000000000011111111
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
.+.......+-..+.+.. ......+ .+|.. -.++..++.|++.+...+..+.+|+..+..+..... ..-..|.
T Consensus 133 ~s~~~~~q~~~~~~~t~~-~~~~d~~-~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~Ht 205 (792)
T KOG1963|consen 133 FSKKLSKQSSRFVLATFD-SAKGDFL-KEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR----DITVHHT 205 (792)
T ss_pred cccccccceeeeEeeecc-ccchhhh-hhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccc----hhhhhhc
Confidence 111111111111111110 0111112 33433 467888888888777777789999988433211111 1124577
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
..+++.+++|++ ++++++..||.|.+|.--........... +.-|..+|++++|+++|.+|++|+.
T Consensus 206 f~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~-------------lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 206 FNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTL-------------LHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred ccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceE-------------EEecccccceeEEecCCceEeeccc
Confidence 779999999999 99999999999999963321111111122 3445789999999999999999987
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+.+-+|.+.+ ++ .+-+..-..++ ..+.++||+.+.+...+|+.|.+-.+.+.
T Consensus 272 E~VLv~Wq~~T-~~-kqfLPRLgs~I---------------~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 272 EGVLVLWQLET-GK-KQFLPRLGSPI---------------LHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ceEEEEEeecC-CC-cccccccCCee---------------EEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999987 43 22222223332 78999999999999999999999987654
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.6e-14 Score=120.04 Aligned_cols=259 Identities=14% Similarity=0.102 Sum_probs=161.4
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 113 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 113 (421)
-.+..++| ++.-..+|++..|-+|++||-.... .+......+..|.|++|-+-.+..++++. .
T Consensus 99 ~dlr~~aW--hqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC--------------r 161 (445)
T KOG2139|consen 99 IDLRGVAW--HQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC--------------R 161 (445)
T ss_pred cceeeEee--chhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee--------------c
Confidence 45778999 5666778999999999999977633 33333345566777777776666554443 2
Q ss_pred cceeEEeecccc---------eeeeeeeec-CCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCC
Q 014644 114 MATKIANVGNSV---------HARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS 181 (421)
Q Consensus 114 ~~~~~~~~~~~~---------~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~ 181 (421)
.-+-+|..+... ...+.+.+. .+| ..|++++|++||..++++ .|..|.|||++ .++.....
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~----- 234 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI----- 234 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-----
Confidence 234455443211 112222331 344 689999999999999996 89999999999 55554432
Q ss_pred CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
....+.+.-+.|+||+ ..|.+++-|+..++|+..+.--. .+-.-+ .+.|....|+|+|++
T Consensus 235 --~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~---erw~lg--------------sgrvqtacWspcGsf 294 (445)
T KOG2139|consen 235 --PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK---ERWILG--------------SGRVQTACWSPCGSF 294 (445)
T ss_pred --ccCCCceeeEEEcCCC-CEEEEecccceeeeehhccccee---cceecc--------------CCceeeeeecCCCCE
Confidence 2334668889999999 99999999999999965432111 111112 458999999999999
Q ss_pred EEEecCCeEEEEECCCCCcceeEEee-ccCcccccccccC-----CC--cceeeeEEEEcCCCCEEEEeeCCC-------
Q 014644 262 LLSRDYMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYN-----ND--SIFDKFECSVSGDGLHFATGSYSN------- 326 (421)
Q Consensus 262 l~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~--~~~~~~~~~~sp~~~~l~~~s~dg------- 326 (421)
|+....+.-++|.+.-.++....... ....+..+.++.+ +. +--+..+++|.|.|.+||+.-..+
T Consensus 295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k 374 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK 374 (445)
T ss_pred EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence 88765566677766433332111100 0000000011100 00 000126899999999999765433
Q ss_pred -eEEEEecCCC
Q 014644 327 -LLRIFSHGVG 336 (421)
Q Consensus 327 -~i~iwd~~~~ 336 (421)
.|.+||.+..
T Consensus 375 ~~i~~fdtr~s 385 (445)
T KOG2139|consen 375 LHISRFDTRKS 385 (445)
T ss_pred hhhhhhccccc
Confidence 3666776644
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.4e-15 Score=125.37 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=139.9
Q ss_pred EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccce
Q 014644 37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 116 (421)
Q Consensus 37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (421)
.+++| +.++..+++++.||++|+|++.+..
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~------------------------------------------------ 177 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSML------------------------------------------------ 177 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCcch------------------------------------------------
Confidence 77888 7899999999999999999977643
Q ss_pred eEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE
Q 014644 117 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 195 (421)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 195 (421)
.+... ..|..+|.+|.|+|||++|++- .| ..+||+++ .+..+... +-.+.......+.|
T Consensus 178 ------------t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~-----t~~~k~~~~~~cRF 237 (398)
T KOG0771|consen 178 ------------TILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK-----TPFSKDEMFSSCRF 237 (398)
T ss_pred ------------hhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc-----CCcccchhhhhcee
Confidence 11112 5788999999999999999996 77 99999999 44333322 11223344566777
Q ss_pred ecCC--CCeEEEEE--cCCeEEEEECCccccc--ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644 196 HPIY--CNLLAYSS--SRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 268 (421)
Q Consensus 196 ~p~~--~~~l~s~~--~d~~v~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~ 268 (421)
+-++ ..+.+.+. .-+.|+.||+.....- .+..+.... ...|++++.++||++++.|+. |
T Consensus 238 ~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--------------~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 238 SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--------------FKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--------------cCcceeEEEcCCCcEEEEeccCC
Confidence 7653 12222222 3466777776543210 000111111 357999999999999999987 9
Q ss_pred eEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.|-|++..+ -+.++.. +.|...+ +.+.|+|+.+++++.+.|..+.+..+...
T Consensus 304 sVai~~~~~-lq~~~~vk~aH~~~V---------------T~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 304 SVAIYDAKS-LQRLQYVKEAHLGFV---------------TGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cEEEEEece-eeeeEeehhhheeee---------------eeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999999875 4443333 3455544 89999999999999999999988887653
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=127.36 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=110.8
Q ss_pred eEEEeecCCCCEEEEE--cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-CeEEEE
Q 014644 141 INSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLV 215 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~~v~iw 215 (421)
+..++|+|||+.|+.. .++ .|.+||++ ++...+. ..+...+....|+|+| +.|+..+.+ +...+|
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVY 314 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCCCCCcCceEECCCC-CEEEEEeCCCCCceEE
Confidence 3457899999988864 444 58889997 4443332 2334567889999999 777766653 444454
Q ss_pred --ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C---CeEEEEECCCCCcceeEEeecc
Q 014644 216 --DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 216 --d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
|+..+... + +.. .........|+|||++|+... . ..|.+||+.+ ++. ..+....
T Consensus 315 ~~d~~~g~~~----~-lt~-------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~~-~~Lt~~~ 374 (429)
T PRK03629 315 KVNINGGAPQ----R-ITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLTDTF 374 (429)
T ss_pred EEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CCe-EEeCCCC
Confidence 66554321 1 111 123456788999999987642 2 4688899875 443 3333211
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe---EEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
. . ....|+|||++|+..+.++. ++++++.. .....+.+|.+.+...+|+|.
T Consensus 375 ~-~---------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 375 L-D---------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-C---------------CCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence 1 1 36789999999998887764 67777752 455667778888888888764
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.3e-15 Score=127.12 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=130.2
Q ss_pred EEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644 142 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 142 ~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~ 220 (421)
.+++|+++|..|+++ .||++|+|+........ ....|...|.++.|+||| ++|++.+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 688999999999999 99999999965222222 235688999999999999 999999999 8999999998
Q ss_pred cccccchhhhccccccCCCcccccccccceeEEEEcCCC---CEEE-E-ecC-CeEEEEECCCCCc-----ceeEEeecc
Q 014644 221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLL-S-RDY-MNLKLWDIRMDST-----PVATFKIHE 289 (421)
Q Consensus 221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~-~-~~~-~~i~i~d~~~~~~-----~~~~~~~~~ 289 (421)
... ..... ...+.....+.|+.|+ .+.+ + ... +.|+.||+..... ..+.+..++
T Consensus 218 ~~~----a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AAL----ARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chh----hhcCC-----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 433 11110 1114456778888876 3333 3 233 7788877653211 111111222
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
. +.+++.+++|++++.|+.||.|-|++..+-+.....-+.|...|+.+.|+|+
T Consensus 283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 1 2799999999999999999999999999886667777899999999999999
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=2.5e-14 Score=118.62 Aligned_cols=224 Identities=15% Similarity=0.199 Sum_probs=129.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeE
Q 014644 39 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 118 (421)
Q Consensus 39 v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 118 (421)
.+| +|+|+++|+.+.- .+.|-|.++-++..+.. .-..|.-+.|....-.++|... ....+.+
T Consensus 14 c~f--Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~y-------------k~~~vqv 75 (447)
T KOG4497|consen 14 CSF--SPCGNYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAY-------------KDPKVQV 75 (447)
T ss_pred eeE--CCCCCeeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeee-------------ccceEEE
Confidence 455 7999999999876 78888887765322111 0111222222222222222221 2346788
Q ss_pred EeecccceeeeeeeecCCCCcceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644 119 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 196 (421)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 196 (421)
|++... +---.+ .....++.+++|||||+.|+ ++ .+-.|.+|.+. +.....+ +--...+..++|+
T Consensus 76 wsl~Qp---ew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~~--------~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 76 WSLVQP---EWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYLL--------PHPKTNVKGYAFH 142 (447)
T ss_pred EEeecc---eeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEEe--------cccccCceeEEEC
Confidence 888765 444444 56677899999999996555 56 89999999998 3433322 1123456889999
Q ss_pred cCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644 197 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 276 (421)
Q Consensus 197 p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~ 276 (421)
|+| ++.+.++.-.....+++..-+.. ...+.+ +-..-..+.+.|+|||..|+. ||--
T Consensus 143 ~dg-~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f-------------~~dT~DltgieWsPdg~~laV--------wd~~ 199 (447)
T KOG4497|consen 143 PDG-QFCAILSRRDCKDYVQISSCKAW-ILLKEF-------------KLDTIDLTGIEWSPDGNWLAV--------WDNV 199 (447)
T ss_pred CCC-ceeeeeecccHHHHHHHHhhHHH-HHHHhc-------------CCCcccccCceECCCCcEEEE--------ecch
Confidence 999 88777764321111111110000 000111 111345688999999976654 4422
Q ss_pred CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644 277 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~ 333 (421)
- .-.+..+...- ++..++|+|.+++|+.|+.|+.+|+.+-
T Consensus 200 L-eykv~aYe~~l----------------G~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 200 L-EYKVYAYERGL----------------GLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred h-hheeeeeeecc----------------ceeEEEeccccceEEeeccchhhhhhce
Confidence 1 11111111111 1247899999999999999999988653
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=1.6e-14 Score=120.40 Aligned_cols=293 Identities=12% Similarity=0.093 Sum_probs=171.9
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.+-|.+|.| ...|.+||||..+|.|.++.-+... ......+..+++-+
T Consensus 25 adiis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF--------------------------- 75 (433)
T KOG1354|consen 25 ADIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF--------------------------- 75 (433)
T ss_pred hcceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc---------------------------
Confidence 456899999 6889999999999999999744321 11111111111100
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC---EEEEEcCCcEEEEeCCCCceee-------------
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF------------- 173 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~~d~~i~lwd~~~~~~~~------------- 173 (421)
.-++.+ .-...|..+.|.+++. +|+++.|.+|++|.+...+...
T Consensus 76 ------------------DYLkSl--eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~ 135 (433)
T KOG1354|consen 76 ------------------DYLKSL--EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGT 135 (433)
T ss_pred ------------------chhhhh--hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCc
Confidence 111222 2345688899988654 4555699999999986322211
Q ss_pred ----eeeecCC-----------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCC
Q 014644 174 ----NIVDMKP-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 238 (421)
Q Consensus 174 ----~~~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~ 238 (421)
+...+.+ .--..|+..|.++.++.|. ..++++ .|-.|.+|++.-.... ..+.+. .|.
T Consensus 136 ~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~s---FnIVDI---KP~ 207 (433)
T KOG1354|consen 136 ITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQS---FNIVDI---KPA 207 (433)
T ss_pred cceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCc---eeEEEc---ccc
Confidence 0000011 0124688899999999998 777654 5778999998753211 122221 111
Q ss_pred CcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcce---eEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644 239 SKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 313 (421)
Q Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 313 (421)
. +.....-|++..|+|... .++-.+. |+|++.|++...-+. +.+..+..+.. .-+-.+.|-.|..+.|+
T Consensus 208 n---mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~---rsffseiIsSISDvKFs 281 (433)
T KOG1354|consen 208 N---MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS---RSFFSEIISSISDVKFS 281 (433)
T ss_pred C---HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc---hhhHHHHhhhhhceEEc
Confidence 1 112245688999999643 4444444 999999998522221 11222222211 11112223345789999
Q ss_pred CCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccc
Q 014644 314 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLS 393 (421)
Q Consensus 314 p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~ 393 (421)
++|+||++-.. -+|++||+........+++.|..--..+.-.-. . +.-
T Consensus 282 ~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE-----------------------n--------D~I 329 (433)
T KOG1354|consen 282 HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE-----------------------N--------DAI 329 (433)
T ss_pred cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh-----------------------c--------cch
Confidence 99999987764 799999998776777777766432111110000 0 001
Q ss_pred cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 394 SKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 394 ~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
-.-..++|+.++..+++|+ .+..++|+
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEec
Confidence 1223678999999999998 55567765
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.1e-13 Score=128.48 Aligned_cols=230 Identities=12% Similarity=0.118 Sum_probs=142.6
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+.++|.+.. .. +.+ ..+...+.+.+|+|||+.|+.. .+..|.+|++. +++...+ ......+
T Consensus 180 ~l~~~d~dg~---~~-~~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l--------~~~~~~~ 245 (429)
T PRK03629 180 ELRVSDYDGY---NQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQV--------ASFPRHN 245 (429)
T ss_pred eEEEEcCCCC---CC-EEe-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEc--------cCCCCCc
Confidence 4555555433 22 333 3456789999999999998863 24578999997 4433322 1122334
Q ss_pred eEEEEecCCCCeEEEE-EcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 191 TSAEFHPIYCNLLAYS-SSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~-~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
..+.|+||| +.|+.. +.+| .|.+||+.++... +.... ...+....|+|||+.|+..++
T Consensus 246 ~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 246 GAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSD 306 (429)
T ss_pred CCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeC
Confidence 568999999 766654 4454 5888999876432 22222 345678999999998876643
Q ss_pred --CeEEEE--ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCce
Q 014644 268 --MNLKLW--DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGG 340 (421)
Q Consensus 268 --~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~ 340 (421)
+...|| |+.. ++ ...+....... ....|+|||++|+..+.+ ..|++||+.++. .
T Consensus 307 ~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~ 367 (429)
T PRK03629 307 QAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V 367 (429)
T ss_pred CCCCceEEEEECCC-CC-eEEeecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCC--e
Confidence 444444 6543 33 33333222211 468999999998876543 358889998763 2
Q ss_pred eEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC--CC-CCccccccccccCeEEEEEccC
Q 014644 341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SS-SGHHELSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~~-~~~~~~~~~~~~~v~~~~~spd 404 (421)
..+... .......|+|+ |+ .|+..+.++. .++ .. ++....+..+...+...+|+|-
T Consensus 368 ~~Lt~~-~~~~~p~~SpD--G~-----~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 368 QVLTDT-FLDETPSIAPN--GT-----MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEeCCC-CCCCCceECCC--CC-----EEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 233322 23456788888 44 6777766665 344 33 3344445567778889999983
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=109.59 Aligned_cols=215 Identities=13% Similarity=0.145 Sum_probs=144.1
Q ss_pred cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
..+|+.+|+.++| . ..+|++|+ ||.|+=|...+..-.
T Consensus 58 eqahdgpiy~~~f--~--d~~Lls~g-dG~V~gw~W~E~~es-------------------------------------- 94 (325)
T KOG0649|consen 58 EQAHDGPIYYLAF--H--DDFLLSGG-DGLVYGWEWNEEEES-------------------------------------- 94 (325)
T ss_pred ccccCCCeeeeee--e--hhheeecc-CceEEEeeehhhhhh--------------------------------------
Confidence 3689999999999 3 34555555 699999998764300
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
..+-++|..... .++- .-.--.|+++...|...-++.+ .|+.++-||++ .+...+.+ ++|+
T Consensus 95 ----~~~K~lwe~~~P-----~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~-------rGHt 156 (325)
T KOG0649|consen 95 ----LATKRLWEVKIP-----MQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREY-------RGHT 156 (325)
T ss_pred ----ccchhhhhhcCc-----cccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEE-------cCCc
Confidence 001123433222 1110 1122468899999876666666 99999999999 66666654 8999
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc-ccceeEEEEcCCCCEEEEec
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 266 (421)
+.|.++.--... ..+++|+.||++|+||.++++.. +.++. ...+ +.+.-| ...|.+++- +..++++|.
T Consensus 157 DYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~-yk~~---~~lRp~~g~wigala~--~edWlvCGg 225 (325)
T KOG0649|consen 157 DYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEP-YKNP---NLLRPDWGKWIGALAV--NEDWLVCGG 225 (325)
T ss_pred ceeeeeeecccC-cceeecCCCccEEEEecccccee----EEecc-ccCh---hhcCcccCceeEEEec--cCceEEecC
Confidence 999999874443 57999999999999999997654 33332 1111 111111 234555554 477999988
Q ss_pred CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
...+.+|.++. .++...+...... ..+.|. ...++++++.+.|.-|.+.
T Consensus 226 Gp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 226 GPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence 78899999996 7877777554432 356664 4467788888888888876
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.3e-12 Score=110.29 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=130.7
Q ss_pred eEEEeecCCCCEEEE-E--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 141 INSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 141 v~~l~~~~~~~~l~s-~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
|-.+-|+ ..++|. + +-+.+++.+.+. +..+.-+ .....|.++.++.+ .|+.+=.+ .|.|||+
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk-~~~ICe~--------~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI 113 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKK-KTTICEI--------FFPTSILAVRMNRK---RLVVCLEE-SIYIYDI 113 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEccc-CceEEEE--------ecCCceEEEEEccc---eEEEEEcc-cEEEEec
Confidence 4445555 344444 3 345789999883 3333322 24567999999975 34444433 3999999
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--cC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPK 294 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 294 (421)
++.+.. +.++. .+.+...+.++.+++.+.+++.- .. |.|.+||+.+ -+++..+..|.+.+
T Consensus 114 ~~MklL----hTI~t----------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l-- 176 (391)
T KOG2110|consen 114 KDMKLL----HTIET----------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL-- 176 (391)
T ss_pred ccceee----hhhhc----------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce--
Confidence 997755 44433 01123456677777777799863 23 9999999986 88899999999876
Q ss_pred cccccCCCcceeeeEEEEcCCCCEEEEeeCCCe-EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644 295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 373 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 373 (421)
.+++|+|+|.+||++|+.|+ ||++.+.++ +....++. |.
T Consensus 177 -------------Aalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRR---------------G~----------- 216 (391)
T KOG2110|consen 177 -------------AALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRR---------------GT----------- 216 (391)
T ss_pred -------------eEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeC---------------Cc-----------
Confidence 78999999999999999997 789999887 33322221 11
Q ss_pred ccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 374 YRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 374 ~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.-..|.+++|+||+++|++.+ .+.+-+|.
T Consensus 217 ------------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 217 ------------------YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ------------------eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 024577889999999888777 56677774
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=126.54 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=131.9
Q ss_pred CCCCcceEEEeecCCCCEEEEE-c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d 209 (421)
..+...+.+.+|+|||+.|+.. . + ..|.+||+. +++...+ ....+.+.+..|+||| +.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~-~g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA-TGRRRVV--------ANFKGSNSAPAWSPDG-RTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEEccC
Confidence 4567789999999999998875 3 3 359999998 4443332 1223445688999999 6665 56778
Q ss_pred CeEEEEEC--CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE
Q 014644 210 GFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 210 ~~v~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~ 285 (421)
+...+|.+ ..+.. +.+.. +........|+|||+.|+..++ +...||.+...+.....+
T Consensus 262 g~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 262 GNSQIYTVNADGSGL-----RRLTQ-------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred CCceEEEEECCCCCc-----EECCC-------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 87666654 33321 11111 1334566789999998886543 556666554323223333
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCccc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 362 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (421)
....... ...+|+|||++|+..+.++ .|++||+.++. .. .+... .......|+|+ ++
T Consensus 324 t~~g~~~---------------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~-~lt~~-~~~~~p~~spd--g~ 383 (427)
T PRK02889 324 TFTGSYN---------------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-VT-ALTDT-TRDESPSFAPN--GR 383 (427)
T ss_pred ecCCCCc---------------CceEECCCCCEEEEEEccCCcEEEEEEECCCCC-eE-EccCC-CCccCceECCC--CC
Confidence 2221111 3578999999998777654 69999998763 22 23222 33467889988 44
Q ss_pred ccccceeeeecccCc--ccC--CCCCc-cccccccccCeEEEEEccC
Q 014644 363 RSSLSNLTRGLYRQA--HEN--SSSGH-HELSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 363 ~~~~~~l~~g~~d~~--~iw--~~~~~-~~~~~~~~~~v~~~~~spd 404 (421)
.|+....++. .++ +..+. ......+.+.+...+|+|-
T Consensus 384 -----~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 384 -----YILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -----EEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 5555554443 455 22222 2223334566777888874
No 217
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=5.9e-14 Score=112.96 Aligned_cols=168 Identities=12% Similarity=0.163 Sum_probs=121.5
Q ss_pred CCCcceEEEeecC-CCC--EEEEE-cCCcEEEEeCCCCceeeeeeecCC--CCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 136 AHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 136 ~h~~~v~~l~~~~-~~~--~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
+..+.+.+..+.. ++. +|++| .+|.+.+||+.+....+..-...+ .....|..+|.++.+.+.- ..=++++.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence 3456677777533 333 44557 999999999985433222110000 1235789999999999875 566778888
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~ 288 (421)
..+..|.+......-+.... ..-.+..+..+.+-||++.+|+++. +.||+|..++ ..++..++-|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyH 292 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYH 292 (323)
T ss_pred ccceeeeeccccCcccccce-------------EEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhh
Confidence 88899987653211000000 1112457899999999999999875 9999999997 9999999989
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~ 333 (421)
...+ .+++|+|+...+|+++.|+.|.+|++
T Consensus 293 sagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 8765 89999999999999999999999986
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=127.04 Aligned_cols=229 Identities=15% Similarity=0.111 Sum_probs=140.3
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+.+||.+. ...+.+ ..+...+.+.+|+|||+.|+.. . +..|.+||+. .++...+ ....+..
T Consensus 185 ~l~i~D~~g----~~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~-~g~~~~l--------~~~~g~~ 250 (433)
T PRK04922 185 ALQVADSDG----YNPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA-TGQRELV--------ASFRGIN 250 (433)
T ss_pred EEEEECCCC----CCceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-CCCEEEe--------ccCCCCc
Confidence 566677643 333444 4667789999999999998875 3 3469999997 4433322 2223345
Q ss_pred eEEEEecCCCCeE-EEEEcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 191 TSAEFHPIYCNLL-AYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 191 ~~~~~~p~~~~~l-~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
.++.|+|+| +.| ++.+.++ .|.+||+.++... .+.. +.......+|+|||+.|+..++
T Consensus 251 ~~~~~SpDG-~~l~~~~s~~g~~~Iy~~d~~~g~~~-----~lt~-------------~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 251 GAPSFSPDG-RRLALTLSRDGNPEIYVMDLGSRQLT-----RLTN-------------HFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred cCceECCCC-CEEEEEEeCCCCceEEEEECCCCCeE-----ECcc-------------CCCCccceEECCCCCEEEEEEC
Confidence 578999999 655 4555555 5999999876532 1222 1234467899999999887653
Q ss_pred --Ce--EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCce
Q 014644 268 --MN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG 340 (421)
Q Consensus 268 --~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~ 340 (421)
+. |+++|+.. ++ ...+....... ...+|+|||++|+..+.++ .|++||+.++. ..
T Consensus 312 ~~g~~~iy~~dl~~-g~-~~~lt~~g~~~---------------~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~ 373 (433)
T PRK04922 312 RGGRPQIYRVAASG-GS-AERLTFQGNYN---------------ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VR 373 (433)
T ss_pred CCCCceEEEEECCC-CC-eEEeecCCCCc---------------cCEEECCCCCEEEEEECCCCceeEEEEECCCCC-eE
Confidence 44 66667654 33 33332222111 3689999999998765443 69999998763 22
Q ss_pred eEEecCCCCccceeeecCCcccccccceeeeeccc-Cc-ccC--CC-CCccccccccccCeEEEEEcc
Q 014644 341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR-QA-HEN--SS-SGHHELSYNLSSKLLHLAWHP 403 (421)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-~~-~iw--~~-~~~~~~~~~~~~~v~~~~~sp 403 (421)
.+. +........|+|+ ++ .++..+.+ +. .|| +. +........+...+...+|+|
T Consensus 374 -~Lt-~~~~~~~p~~spd--G~-----~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 374 -TLT-PGSLDESPSFAPN--GS-----MVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -ECC-CCCCCCCceECCC--CC-----EEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 332 2224556788888 44 55554443 33 566 33 223333333455677788887
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1e-13 Score=113.49 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=102.8
Q ss_pred EEeecCCCCEEEEE-c---C-------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE--EEcC
Q 014644 143 SISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSR 209 (421)
Q Consensus 143 ~l~~~~~~~~l~s~-~---d-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--~~~d 209 (421)
.+.|+|+|++|+.- . | +...||.++..+.....+. +. ..++|.+++|+|++ ..|+. |..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~-~~~~I~~~~WsP~g-~~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LK-KEGPIHDVAWSPNG-NEFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----cc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence 57899999988863 2 1 2356666643344444331 11 34569999999999 66544 3467
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---C-CeEEEEECCCCCcceeEE
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~-~~i~i~d~~~~~~~~~~~ 285 (421)
..|.+||++... . ..+. ...++.+.|+|+|++|+.++ . |.|.+||.++ .+.+...
T Consensus 83 ~~v~lyd~~~~~-i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 83 AKVTLYDVKGKK-I----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred cccEEEcCcccE-e----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 899999997321 1 2221 34678999999999999863 2 7899999985 6666555
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------CCeEEEEecC
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 334 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------dg~i~iwd~~ 334 (421)
.... . ..++|+|+|+++++++. |+.++||+..
T Consensus 142 ~~~~-~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSD-A----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCc-E----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3222 1 68999999999998764 7889999986
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.1e-13 Score=123.61 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=106.5
Q ss_pred ceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEE
Q 014644 140 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD 216 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd 216 (421)
.+.+.+|+|||+.|+. . .++...||.++......+. +..+.....+..|+||| +.|+..+ .++...+|.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYR 312 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEE
Confidence 3457899999998875 4 7777777765422222222 23344556778999999 7776655 346666775
Q ss_pred CC--cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeeccC
Q 014644 217 MR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 217 ~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
+. .+... ++... .......+|+|||++|+..+. ..|.+||+.+ ++.. .+.....
T Consensus 313 ~~~~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~~-~lt~~~~ 372 (427)
T PRK02889 313 MPASGGAAQ----RVTFT--------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQVT-ALTDTTR 372 (427)
T ss_pred EECCCCceE----EEecC--------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCeE-EccCCCC
Confidence 53 32211 11100 122346789999999986543 2699999975 4433 3322111
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
. ....|+|||++|+..+.++ .+++.++. +.....+..+.+.+...+|+|.
T Consensus 373 -~---------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 373 -D---------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD--GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -c---------------cCceECCCCCEEEEEEecCCCEEEEEEECC--CCceEEeecCCCCCCCCccCCC
Confidence 1 4689999999988777543 35555553 3455556666677777777764
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=121.63 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=132.4
Q ss_pred CCCCcceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d 209 (421)
..|...+.+.+|+|||+.|+.. . +..|.+||+. +++...+ ..+.+.+.+.+|+|+| +.| ++.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQRELV--------GNFPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEEe--------ecCCCcccCcEECCCC-CEEEEEEecC
Confidence 5677889999999999988874 2 4689999998 4433322 3345567788999999 655 455656
Q ss_pred Ce--EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644 210 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 210 ~~--v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~ 283 (421)
+. |.+||+.++... + +.. +........|+|||+.|+..++ ..|+++|+.. ++ ..
T Consensus 268 g~~~Iy~~d~~~~~~~----~-Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~-~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT----R-LTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN-PR 327 (435)
T ss_pred CCceEEEEECCCCceE----E-ccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC-eE
Confidence 54 777788775432 1 211 1344567899999999886643 3688888763 33 33
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
.+....... ....|+|||++|+..+.+ ..|.+||+..+ . ...+.. ...+....|+|+
T Consensus 328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~-~~~~~~p~~spD-- 387 (435)
T PRK05137 328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTS-GFLVEGPTWAPN-- 387 (435)
T ss_pred EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccC-CCCCCCCeECCC--
Confidence 443222211 467899999999877653 36888887654 2 223322 234677889988
Q ss_pred ccccccceeeeeccc-C----cccC--CCCCccccccccccCeEEEEEccC
Q 014644 361 ARRSSLSNLTRGLYR-Q----AHEN--SSSGHHELSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 361 ~~~~~~~~l~~g~~d-~----~~iw--~~~~~~~~~~~~~~~v~~~~~spd 404 (421)
++ .|+....+ + ..+| +..+...........+...+|+|-
T Consensus 388 G~-----~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 388 GR-----VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CC-----EEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 44 44443322 1 2455 222221222223345667788774
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=122.58 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=105.6
Q ss_pred eEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCe--EE
Q 014644 141 INSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF--VR 213 (421)
Q Consensus 141 v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~--v~ 213 (421)
..+++|+|||+.|+. . .++ .|++||+. +++..+. ..+......++|+|+| +.|+.++ .++. |.
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~l--------t~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTRL--------TNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIY 319 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEEC--------ccCCCCccceEECCCC-CEEEEEECCCCCceEE
Confidence 446799999998764 3 444 59999998 4443322 3344455678999999 7777666 4444 55
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C---CeEEEEECCCCCcceeEEeecc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
++|+..+... ++... ......++|+|||++|+..+ + ..|.+||+.+ ++.. .+...
T Consensus 320 ~~dl~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~- 378 (433)
T PRK04922 320 RVAASGGSAE----RLTFQ--------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPG- 378 (433)
T ss_pred EEECCCCCeE----EeecC--------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCC-
Confidence 6666554321 11111 12345689999999998653 2 3699999875 4433 33221
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA 357 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (421)
... ....|+|||++|+..+.+ +.|+++++.. .....+..+.+.+...+|+|
T Consensus 379 ~~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 379 SLD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence 111 367999999998877653 4577788753 34455555555666666654
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=6.7e-13 Score=110.31 Aligned_cols=244 Identities=14% Similarity=0.153 Sum_probs=147.5
Q ss_pred cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc-
Q 014644 33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW- 110 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 110 (421)
...+.+++| +|+|+ .|.++.-|-.|.+|.+.+.+...+...+ ..+...++++++++.+..+-
T Consensus 91 ~agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 91 QAGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CCcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeeecc
Confidence 567899999 79985 5556677889999999887644333322 23344555666666555443
Q ss_pred ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
+...-+.+...... +.++.+ .-.+-..+.+.|+|||..||.= -+-.|..|.. .
T Consensus 155 DCkdyv~i~~c~~W---~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~--------------------~ 210 (447)
T KOG4497|consen 155 DCKDYVQISSCKAW---ILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------------G 210 (447)
T ss_pred cHHHHHHHHhhHHH---HHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee--------------------c
Confidence 11111222111111 334444 4455677899999999887752 2333332222 2
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchh--------------------------------hhccc--
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR--------------------------------ILRDA-- 233 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------------------------------~~~~h-- 233 (421)
-.+..++|+|.+ ++|+.|+.|+.+|+.+--+-+...+..+ .++.|
T Consensus 211 lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 211 LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 347788999998 9999999999998765433211000000 00000
Q ss_pred ---------cccCCCcc------cccccccceeEEEEcCCCCEEEEecC---CeEEEEECCCCCcceeEEeeccCccccc
Q 014644 234 ---------AESHGSKS------FFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKL 295 (421)
Q Consensus 234 ---------~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 295 (421)
...+.... -+.+....+..++|++|..++++.++ +.+-+||++. .+....+ ....++
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~pi--- 364 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKHPI--- 364 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhccce---
Confidence 00000000 12233456788999999999999865 7899999985 4433333 233333
Q ss_pred ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
..+.|+|....|+.+.....+++|...
T Consensus 365 ------------raf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 365 ------------RAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred ------------eEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 689999998888888777889999765
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1e-12 Score=107.64 Aligned_cols=116 Identities=13% Similarity=0.243 Sum_probs=86.0
Q ss_pred CCcceEEEeecCCCCEEEE--E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---CC
Q 014644 137 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 210 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---d~ 210 (421)
..++|.+++|+|+|+.++. | .++.|.+||++ .+.+..+ +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~---------~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF---------GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee---------cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 4456999999999998765 5 67899999997 3333332 34567889999999 88888874 46
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-------CCeEEEEECCCCCccee
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 283 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~i~d~~~~~~~~~ 283 (421)
.|.+||+++.+.. ...+ ...+..++|+|||++++++. +..++||+.. |+.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~---------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFE---------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----eccc---------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999975533 2222 23578999999999999752 3678999985 66554
Q ss_pred EE
Q 014644 284 TF 285 (421)
Q Consensus 284 ~~ 285 (421)
..
T Consensus 185 ~~ 186 (194)
T PF08662_consen 185 KK 186 (194)
T ss_pred ec
Confidence 43
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=6.8e-12 Score=103.97 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=95.4
Q ss_pred ceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCe
Q 014644 115 ATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v 190 (421)
.+.+|...... +.++.+. ......+-++.-..+..+||. | .-|.|+|-|+..... .-.+ ...|...|
T Consensus 114 ~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s~I 184 (346)
T KOG2111|consen 114 KIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDSDI 184 (346)
T ss_pred eEEEEEcCCCh--hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------EEcccCce
Confidence 45666655322 2222221 122333433333334445555 6 789999999983332 1122 37899999
Q ss_pred eEEEEecCCCCeEEEEEcCCe-EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644 191 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 268 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~ 268 (421)
.|++.+-+| .++|++|..|+ |||||..++....+..+-.+ ...|.+++|||++.+|+++++ |
T Consensus 185 acv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 185 ACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------RADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred eEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------hheEEEEEeCCCccEEEEEcCCC
Confidence 999999999 99999999987 69999999886633222111 367999999999999999999 9
Q ss_pred eEEEEECCC
Q 014644 269 NLKLWDIRM 277 (421)
Q Consensus 269 ~i~i~d~~~ 277 (421)
+++||.++.
T Consensus 249 TlHiF~l~~ 257 (346)
T KOG2111|consen 249 TLHIFSLRD 257 (346)
T ss_pred eEEEEEeec
Confidence 999999974
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=2.2e-13 Score=120.12 Aligned_cols=165 Identities=11% Similarity=0.196 Sum_probs=109.2
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
+..|++++|.| -+...++.+-.+|.+.++|..-..- ... +.-..+..+..
T Consensus 219 ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~-------~t~--------------------p~~~~~k~~~~-- 268 (636)
T KOG2394|consen 219 KSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCG-------ATA--------------------PSYQALKDGDQ-- 268 (636)
T ss_pred ccceEEEEEEe-CCCceEEEEEecCceEEeecccccc-------CCC--------------------CcccccCCCCe--
Confidence 47899999985 4566788888999999998632110 000 00000000000
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
..+..|..... ..++..+ .--.+.|+..+|+|||++||+- .||.+||+|.. ..+++.+ ++..-+...
T Consensus 269 -f~i~t~ksk~~--rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLL 336 (636)
T KOG2394|consen 269 -FAILTSKSKKT--RNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLL 336 (636)
T ss_pred -eEEeeeecccc--CCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceE
Confidence 00111110000 0122222 1223489999999999999997 99999999998 4444432 355567899
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 257 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 257 (421)
|++|+||| ++|++|++|..|.||.+...+++ . .+ .+|++.|+.++|.|
T Consensus 337 CvcWSPDG-KyIvtGGEDDLVtVwSf~erRVV----A--RG-----------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDG-KYIVTGGEDDLVTVWSFEERRVV----A--RG-----------QGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCc-cEEEecCCcceEEEEEeccceEE----E--ec-----------cccccceeeEeecc
Confidence 99999999 99999999999999999987643 2 22 35699999999997
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1e-12 Score=110.53 Aligned_cols=167 Identities=13% Similarity=0.244 Sum_probs=112.9
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
+..++.++|++.-..++++ .|-.|++|+-.. .+...+. ...+..|.+++|-|.+...|+.|+..| |.+|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~g-IciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWS 168 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceec------chhhcceeEEEeccCCcceeeeeecce-eEEEE
Confidence 3457888999866667777 888999999873 3332221 234567999999999867788877766 88997
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE-eeccCccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF-KIHEHLRP 293 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~-~~~~~~~~ 293 (421)
...........+....| +......++| .+|+++.|.+||..+++++- ..|.|||..+ +..+... .+..+.
T Consensus 169 ~s~tln~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~-- 241 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF-- 241 (445)
T ss_pred cCccccccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce--
Confidence 65432111111111111 0011112333 78999999999999998853 8899999987 4443322 222221
Q ss_pred ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
.-+.|||||.+|.+++-|+..++|+..
T Consensus 242 --------------slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 242 --------------SLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred --------------eeEEEcCCCCEEEEecccceeeeehhc
Confidence 468999999999999999999999654
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.1e-12 Score=109.80 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=165.8
Q ss_pred CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc----eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-
Q 014644 136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR- 209 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d- 209 (421)
..+..|..++.. | ..|++| .+|.+.+|..+.+. .+.. +. -...+..+.-+|..+.++++|+..
T Consensus 103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~--------la-~g~g~~~~r~~~~~p~Iva~GGke~ 171 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIK--------LA-TGPGLYDVRQTDTDPYIVATGGKEN 171 (412)
T ss_pred cccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccccccee--------ee-cCCceeeeccCCCCCceEecCchhc
Confidence 445566666554 3 467777 99999999987322 1111 11 225567777778776788889988
Q ss_pred -CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644 210 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 210 -~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~~~~~~~ 285 (421)
..+.+||+.+.. ++|.. ..-+...-- -.-.-.++++.|-+. ...|++++. +.+++||.+...+++..+
T Consensus 172 ~n~lkiwdle~~~------qiw~a-KNvpnD~L~-LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f 243 (412)
T KOG3881|consen 172 INELKIWDLEQSK------QIWSA-KNVPNDRLG-LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF 243 (412)
T ss_pred ccceeeeecccce------eeeec-cCCCCcccc-ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe
Confidence 899999998864 44443 111110000 001246778999887 788999987 999999999878899988
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
...+.++ .++...|+++.|++|..-|.+..+|++.+......+.+-.+.++.+...|.
T Consensus 244 d~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~------- 301 (412)
T KOG3881|consen 244 DFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT------- 301 (412)
T ss_pred ccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC-------
Confidence 8777655 789999999999999999999999999985556669999999999999988
Q ss_pred cceeeeecccCc-ccCCCCC-ccccccccccCeEEEEEccCCC
Q 014644 366 LSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTN 406 (421)
Q Consensus 366 ~~~l~~g~~d~~-~iw~~~~-~~~~~~~~~~~v~~~~~spd~~ 406 (421)
..+|++++-|+. +|++... .+....-....++.+-+.++-+
T Consensus 302 ~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 302 HPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred CceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 339999999999 9994443 3333334456667777766543
No 229
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=1.1e-14 Score=134.56 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=165.1
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
+.++.+ .+|.+.|.|..|...|.++++| +|..++||.++ +..+.. .+.||.+.|+.++.+.+. .+++++
T Consensus 181 k~ikrL-lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lA-------s~rGhs~ditdlavs~~n-~~iaaa 250 (1113)
T KOG0644|consen 181 KNIKRL-LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLA-------SCRGHSGDITDLAVSSNN-TMIAAA 250 (1113)
T ss_pred HHHHHH-HhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhc-------cCCCCccccchhccchhh-hhhhhc
Confidence 344555 7999999999999999999999 99999999988 566664 449999999999999987 899999
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~ 286 (421)
+.|..|++|.++.+..+ .++.+| .+.|++++|+|-. .++.+|++++||.+- .+.....
T Consensus 251 S~D~vIrvWrl~~~~pv----svLrgh-------------tgavtaiafsP~~---sss~dgt~~~wd~r~--~~~~y~p 308 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPV----SVLRGH-------------TGAVTAIAFSPRA---SSSDDGTCRIWDARL--EPRIYVP 308 (1113)
T ss_pred ccCceEEEEecCCCchH----HHHhcc-------------ccceeeeccCccc---cCCCCCceEeccccc--cccccCC
Confidence 99999999999997655 666664 8999999999965 334459999999872 1111110
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 366 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
.+.. ..+.+.+ -++.|..++.-.++|+.|+.-..|.+........ .+.|.... +- ..
T Consensus 309 rp~~-------~~~~~~~---~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~----------~lif~t~s-sd--~~ 365 (1113)
T KOG0644|consen 309 RPLK-------FTEKDLV---DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN----------LLIFVTRS-SD--LS 365 (1113)
T ss_pred CCCC-------cccccce---eeeeccccccccccccCCcccccchhhHhhhhcc----------ceEEEecc-cc--cc
Confidence 0000 0011111 4667777788889999999999888764311100 00110000 00 00
Q ss_pred ceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644 367 SNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 420 (421)
Q Consensus 367 ~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~ 420 (421)
....+.-.+-. .+| ..+.+.....+|...+..|.+||-++.++... ++...||+
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 12233333333 677 33445566778999999999999999988433 77899996
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=7.4e-12 Score=111.58 Aligned_cols=289 Identities=15% Similarity=0.149 Sum_probs=191.0
Q ss_pred cccccccccccEEEEEEEEcCCCCe-EEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~-l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
+-+..++|...-+.|.. +|||.| +|||..--.|++||+..-.++.-...
T Consensus 43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl---------------------------- 92 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHL---------------------------- 92 (703)
T ss_pred HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecc----------------------------
Confidence 44556789999999999 799886 55667788999999987553322110
Q ss_pred eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
....|.-.-.+.|-..++.- .|++|.+...- +....+-
T Consensus 93 ---------------------------------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~R------ 131 (703)
T KOG2321|consen 93 ---------------------------------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRTR------ 131 (703)
T ss_pred ---------------------------------cccceeEEEeccchhhheEeecCceeeehhhc--Ceeeeee------
Confidence 01122222334444444444 77777665433 3222211
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
-...-..++++.-. .-|++++....|+-+++..|+.. ..+.. ..+.++.+.+++-..+|
T Consensus 132 ---IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 132 ---IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLL 190 (703)
T ss_pred ---cCcCCccccccCCC-ccEEEeecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceE
Confidence 11223455665444 33555566667888999998765 33333 14689999999999999
Q ss_pred EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644 263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~ 341 (421)
++|+. |.|..||.+. ...+.++..... +... ...+....|+++.|+.+|-.+++|+.+|.+.|||+++..+...
T Consensus 191 a~Gt~~g~VEfwDpR~-ksrv~~l~~~~~-v~s~---pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRD-KSRVGTLDAASS-VNSH---PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred EecccCceEEEecchh-hhhheeeecccc-cCCC---ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 99986 9999999986 666666654433 1111 1112222458999999999999999999999999999866666
Q ss_pred EEecCCCCccceeeecCCcccccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccCCCeEEEecCCc
Q 014644 342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 415 (421)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~ 415 (421)
.-++..-++..+.|.+.... ..+++....-.+|| ...+.....+.....+.++|+-|++-++.++.++.
T Consensus 266 kdh~~e~pi~~l~~~~~~~q-----~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQ-----NKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred cccCCccceeeecccccCCC-----ceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 66677778888888766222 25666555555999 33344444455566799999999999988887543
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.7e-12 Score=118.98 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=134.8
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeC---CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 107 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~---d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (421)
.|.+.+...+| +|||+.|+..+. +..|.+||+.+++.+.+
T Consensus 199 ~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----------------------------------- 241 (435)
T PRK05137 199 DGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV----------------------------------- 241 (435)
T ss_pred cCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-----------------------------------
Confidence 46678899999 788888887764 45788888877642221
Q ss_pred cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCc--EEEEeCCCCceeeeeeecCCCCC
Q 014644 108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
..+.+.+...+|+|||+.|+. . .++. |.+||+. ++...++
T Consensus 242 ---------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~L-------- 285 (435)
T PRK05137 242 ---------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRL-------- 285 (435)
T ss_pred ---------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEEc--------
Confidence 223345667899999998764 3 5554 7777887 3433322
Q ss_pred CccCCCeeEEEEecCCCCeEEEEEc-CC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 184 DDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
..+........|+||| +.|+..+. +| .|.++|+..+... ++... ...+....|+|||+
T Consensus 286 t~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~ 346 (435)
T PRK05137 286 TDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGD 346 (435)
T ss_pred cCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCC
Confidence 3455566788999999 77776663 33 6777787654321 11111 23456788999999
Q ss_pred EEEEec-C---CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC------CeEEE
Q 014644 261 HLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRI 330 (421)
Q Consensus 261 ~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d------g~i~i 330 (421)
+|+... + ..|.+||+.. + ....+.... .. ..+.|+|||++|+..+.+ ..+++
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDG-S-GERILTSGF-LV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred EEEEEEcCCCceEEEEEECCC-C-ceEeccCCC-CC---------------CCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 998653 2 3678888753 3 233332211 11 478999999998765542 35788
Q ss_pred EecCCCCCceeEEecCCCCccceeeecC
Q 014644 331 FSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
+|+..+ . ...+. ....+...+|+|.
T Consensus 409 ~dl~g~-~-~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 409 VDLTGR-N-EREVP-TPGDASDPAWSPL 433 (435)
T ss_pred EECCCC-c-eEEcc-CCCCccCcccCCC
Confidence 887654 2 23333 2334555666553
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=121.36 Aligned_cols=191 Identities=13% Similarity=0.055 Sum_probs=131.0
Q ss_pred cCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc
Q 014644 147 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 225 (421)
Q Consensus 147 ~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 225 (421)
.|.+--|+.| .-|.|.+.|.. ..+..+.+.. ...-.+..|+++.|-|.+...++.+-.+|.+.+||.........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~-~~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPI-NFEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecch-hhHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3467778888 88999998876 2222221110 00112467999999998878888888999999998643110000
Q ss_pred -------chhhhcccc----ccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644 226 -------SARILRDAA----ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP 293 (421)
Q Consensus 226 -------~~~~~~~h~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~ 293 (421)
.-..+..|. ....+......-.+.|+..+|+|||++||+.+. |.+||||..+ .+++..++..-+.
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGG-- 334 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGG-- 334 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccc--
Confidence 000111100 000111112223458999999999999998876 9999999986 5555444332222
Q ss_pred ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
..+++|||||+||++|++|.-|.||.+... +.+..-++|+++|..++|.|-
T Consensus 335 -------------LLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 335 -------------LLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred -------------eEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeeccc
Confidence 279999999999999999999999999876 777888999999999999863
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=7.1e-10 Score=100.20 Aligned_cols=251 Identities=10% Similarity=0.063 Sum_probs=137.4
Q ss_pred EEEEeCC----CcEEEeec--CCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc--cccceeEEee
Q 014644 50 FILSTND----KTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT--ENMATKIANV 121 (421)
Q Consensus 50 l~t~s~d----~~v~lwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~ 121 (421)
++.|+.. +.|.+|++ +++++..+...........+++ +++..++...... ..+.+..+.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~------------~~~~~~LY~~~e~~~~~g~v~~~~i 69 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV------------SPDGRRLYVVNEGSGDSGGVSSYRI 69 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-------------TTSSEEEEEETTSSTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE------------EeCCCEEEEEEccccCCCCEEEEEE
Confidence 3455555 78999888 5555554443222221122223 3333333333332 2334445544
Q ss_pred ccc-ceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecC------CCCCCccCCCeeE
Q 014644 122 GNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITS 192 (421)
Q Consensus 122 ~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~ 192 (421)
... ...+.+... .........++++|++++|+++ .+|+|.++++...+.+....... +...........+
T Consensus 70 ~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 70 DPDTGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp ETTTTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred CCCcceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 432 222333333 2223345578999999999997 69999999998655444332110 0001122355678
Q ss_pred EEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce
Q 014644 193 AEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN 269 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~ 269 (421)
+.|+|++ +++++.. ....|.+|++............+.. ........++|+|+++++....+ +.
T Consensus 149 v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 149 VVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp EEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred EEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 9999999 7776655 4468999999775411000011111 01345788999999999877644 89
Q ss_pred EEEEECCCC-Ccc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCC
Q 014644 270 LKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 335 (421)
Q Consensus 270 i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~ 335 (421)
|.++++... +.. +......... +... .....++++|||++|++.. .++.|.+|+++.
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~-------~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEG-------FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETT-------SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEEeecccCCceeEEEEeeecccc-------cccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999731 322 1111111000 0000 0115899999999988766 467899999953
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1e-09 Score=93.29 Aligned_cols=233 Identities=12% Similarity=0.147 Sum_probs=150.4
Q ss_pred ccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeC---CCcEEEeecCC--ceeEEeeecCCCCCccccccccccc
Q 014644 17 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEK 91 (421)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~---d~~v~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 91 (421)
+.....+...+..+.+.+..+-++| +++.++|.++-. +|.|--|.++. |.+..+...
T Consensus 23 ld~~~g~l~~~~~v~~~~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------------- 84 (346)
T COG2706 23 LDTKTGELSLLQLVAELGNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------------- 84 (346)
T ss_pred EeCcccccchhhhccccCCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------------
Confidence 3344555666777778888999999 788888887754 46777777664 333322210
Q ss_pred ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCC
Q 014644 92 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS 169 (421)
Q Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~ 169 (421)
.. .++ +-..+++++++++|+++ ..|.|.++-++..
T Consensus 85 ----------------------------------------~~-~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 85 ----------------------------------------TL-PGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred ----------------------------------------cc-CCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 01 222 22678899999999997 7899999999865
Q ss_pred ceeeeeeecCCCCCCccCCC----------eeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCC
Q 014644 170 DQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHG 238 (421)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~ 238 (421)
+.+...+++ ..|.+. +-+..+.|++ ++|++.. .-..|.+|++..+.+.......+..
T Consensus 122 G~l~~~v~~-----~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~------ 189 (346)
T COG2706 122 GSLQPVVQV-----VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP------ 189 (346)
T ss_pred Cccccceee-----eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC------
Confidence 555443321 123222 7788999999 8888776 2356999999977654222222221
Q ss_pred CcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC
Q 014644 239 SKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 316 (421)
Q Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 316 (421)
.....-|.|+|++++...-.+ ++|.+|........+..++...... .-|..+. +...+..+|||
T Consensus 190 --------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~--~~aaIhis~dG 255 (346)
T COG2706 190 --------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTN--WAAAIHISPDG 255 (346)
T ss_pred --------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCC--ceeEEEECCCC
Confidence 356788999999998877654 8999999976333343333222111 0011000 12578999999
Q ss_pred CEEEEeeC-CCeEEEEecCCC
Q 014644 317 LHFATGSY-SNLLRIFSHGVG 336 (421)
Q Consensus 317 ~~l~~~s~-dg~i~iwd~~~~ 336 (421)
++|+++.. ...|.++.+...
T Consensus 256 rFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCC
Confidence 99987764 347888887765
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=114.04 Aligned_cols=296 Identities=10% Similarity=0.017 Sum_probs=204.5
Q ss_pred cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEe
Q 014644 89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWN 165 (421)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd 165 (421)
..+.+..+.++..+..+.+|+- +..+.+|+.... .....+..+|...|..-.|-| +.+.|+++ .||.+++=.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSD--D~~vv~WdW~~~---~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSD--DLQVVVWDWVSG---SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CCCccceeeecccCceeeccCc--cceEEeehhhcc---CcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3456777788888888888876 567889998776 665666689999998888877 45567776 999999988
Q ss_pred CCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccc
Q 014644 166 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 245 (421)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 245 (421)
+...+....+. .+..|.++|.-++.-|+.+..|++++.|+.+.-+|++.+....... -.. ... .
T Consensus 216 i~~t~~~e~t~-----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~---~~~------~ 279 (559)
T KOG1334|consen 216 ILETGYVENTK-----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CRE---ADE------K 279 (559)
T ss_pred eccccceecce-----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eec---cCC------c
Confidence 76555444332 4577999999999999998999999999999999999875432111 000 000 0
Q ss_pred cccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCc-----ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644 246 IIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 318 (421)
Q Consensus 246 ~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 318 (421)
..-....++..|-.. .++++.. ..+++||.+...+ ++..+..+.- .+ +....|++++|+.++.-
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~~-d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------VE-DDPVNITGLVYSHDGSE 350 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc--------cc-cCcccceeEEecCCccc
Confidence 012567889999665 5666654 8899999875211 1222322211 11 33335689999987776
Q ss_pred EEEeeCCCeEEEEecCCCC------------CceeEEecCCCC--ccceeeecCCcccccccceeeeecccCc-ccC--C
Q 014644 319 FATGSYSNLLRIFSHGVGS------------AGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S 381 (421)
Q Consensus 319 l~~~s~dg~i~iwd~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~ 381 (421)
|.+.-.|-.|+++.-..+. ....++.+|... |..+-|-..+ ..++++|++=|. -|| .
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr------sEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR------SEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc------cceEEecCccceEEEEecc
Confidence 7667778889999543321 123447788754 6666665432 347888888787 899 3
Q ss_pred CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 382 SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 382 ~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.++++....+-..-|+||.-||--++||+.+ +-.|.||.
T Consensus 425 t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 425 TGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred hhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 4445544555555899999999999999999 66699995
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=4e-11 Score=112.05 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=118.7
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cC---CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d 209 (421)
..+...+...+|+|||++|+.+ .+ ..|++||+. .++.... ..+...+.+++|+|++ +.|+ +.+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQREKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence 3556678899999999999875 32 479999998 3433222 2234556778999999 6555 44444
Q ss_pred C--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644 210 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 210 ~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~ 283 (421)
+ .|.+||+.++... .+ .. +........|+|||+.|+..++ ..|+++|+.. ++ ..
T Consensus 256 ~~~~i~~~d~~~~~~~----~l-~~-------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~ 315 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLT----RL-TN-------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VR 315 (417)
T ss_pred CCccEEEEECCCCCEE----EC-CC-------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EE
Confidence 4 5888898775422 11 11 1223456789999998876543 3677788764 43 33
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
.+..+.... ..+.|+|+|++|+.++.++ .|.+||+.++ . ...+... .......|+|+
T Consensus 316 ~l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~-~~~~~p~~spd-- 375 (417)
T TIGR02800 316 RLTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDT-GLDESPSFAPN-- 375 (417)
T ss_pred EeecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCC-CCCCCceECCC--
Confidence 333222211 4789999999999888776 7899998875 2 2233222 23345678887
Q ss_pred ccccccceeeeecccCc
Q 014644 361 ARRSSLSNLTRGLYRQA 377 (421)
Q Consensus 361 ~~~~~~~~l~~g~~d~~ 377 (421)
++ .|+..+.++.
T Consensus 376 g~-----~l~~~~~~~~ 387 (417)
T TIGR02800 376 GR-----MILYATTRGG 387 (417)
T ss_pred CC-----EEEEEEeCCC
Confidence 33 5555555443
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.2e-12 Score=113.79 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=194.8
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
..+.++++| +....++|.|+.||.+++-.+.+........ + ++..+
T Consensus 14 nvkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----g-------------------------laa~s--- 59 (1189)
T KOG2041|consen 14 NVKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKS----G-------------------------LAAAS--- 59 (1189)
T ss_pred CceEEEEEE--cccCCeEEeccccceeEEEEccccCCccccc----c-------------------------ccccc---
Confidence 346789999 7889999999999999999988754110000 0 00000
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
....-+++ .||.+.|.-+.|+.+.+.|.++ .+|-|.+|-+-.+.-+-..+. ......|.
T Consensus 60 -------------nLsmNQtL-eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN------nRnKSvV~ 119 (1189)
T KOG2041|consen 60 -------------NLSMNQTL-EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN------NRNKSVVV 119 (1189)
T ss_pred -------------ccchhhhh-ccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh------CcCccEEE
Confidence 00233455 8999999999999999999999 999999999874433322221 33456799
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i 270 (421)
+++|+.+| ..|+....||.|.+=.+...+...+.++ + .....+.|++|.+.++.+-. |.+
T Consensus 120 SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk---g---------------~~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 120 SMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK---G---------------QLLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred EEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc---h---------------heccceeecccHHHHHhhhcCCcE
Confidence 99999999 9999999999998888877654432222 1 23457899999998887755 999
Q ss_pred EEEECCCCCcceeEE--------ee-ccCcccccccccCCCcceeeeEEEE--------cCCCCEEEEeeCCCeEEEEec
Q 014644 271 KLWDIRMDSTPVATF--------KI-HEHLRPKLCDLYNNDSIFDKFECSV--------SGDGLHFATGSYSNLLRIFSH 333 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------sp~~~~l~~~s~dg~i~iwd~ 333 (421)
.+||... .....+ .+ -.....++ ..+.| -|+...++.+-.+|.+.|-.-
T Consensus 181 hlydnqg--nF~~Kl~~~c~Vn~tg~~s~~~~ki------------a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 181 HLYDNQG--NFERKLEKDCEVNGTGIFSNFPTKI------------AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred EEecccc--cHHHhhhhceEEeeeeeecCCCccc------------cceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 9999752 211111 11 01111111 23333 357788999999999988776
Q ss_pred CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCccc----------C-CCCCccccccccccCeEEEEEc
Q 014644 334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHE----------N-SSSGHHELSYNLSSKLLHLAWH 402 (421)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~i----------w-~~~~~~~~~~~~~~~v~~~~~s 402 (421)
.+.......-.+ -.+....|+++ +..||..+.+.... + ..++....+......|+.++|-
T Consensus 247 eND~~Pvv~dtg--m~~vgakWnh~-------G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 247 ENDPEPVVVDTG--MKIVGAKWNHN-------GAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred cCCCCCeEEecc--cEeecceecCC-------CcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEc
Confidence 665333333222 33445667776 34787777654411 1 2334445555567789999999
Q ss_pred cCCCeEEEecCCceEEE
Q 014644 403 PTTNLIACANGNSLFFH 419 (421)
Q Consensus 403 pd~~~la~~~~~~~~i~ 419 (421)
..|-.+|.+.++-|++=
T Consensus 318 g~gLriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 318 GTGLRIAIAVDSFIYFA 334 (1189)
T ss_pred CCceEEEEEecceEEEE
Confidence 99999999998877764
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.6e-11 Score=110.01 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=102.9
Q ss_pred eEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCC--eEE
Q 014644 141 INSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVR 213 (421)
Q Consensus 141 v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~--~v~ 213 (421)
+...+|+|||+.|+. . .++ .|.+||+. ++...+. ..+........|+|++ +.|+..+ .++ .|.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~l--------t~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSRV--------TNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIY 314 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEc--------ccCCCCcCCeEECCCC-CEEEEEECCCCCceEE
Confidence 446889999998875 3 444 58888987 3433322 3344456678999999 7666555 333 566
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeecc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
++|+.+++.. ++... ........|+|||++|+.... ..|.++|+.+ ++. ..+.. .
T Consensus 315 ~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~~-~~lt~-~ 373 (430)
T PRK00178 315 KVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GSV-RILTD-T 373 (430)
T ss_pred EEECCCCCEE----EeecC--------------CCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CCE-EEccC-C
Confidence 7777665421 11111 112345789999999986532 3588889875 443 33321 1
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
... ....|+|||++++..+.+ ..|+++++.. .....+..+.+.+....|+|.
T Consensus 374 ~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g--~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 374 SLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSING--RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCCCCCcCCCccCCC
Confidence 111 256899999998876653 3466777653 334445555555666666653
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.8e-11 Score=104.19 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=118.1
Q ss_pred ceEEEeecCCCCEEEE-E-cC--CcEEEEeCCCCceeeeeeecCCCCCC-ccCCCeeEEEEecC--CCCeEEEEEcCCeE
Q 014644 140 NINSISNNSDCETFVS-A-DD--LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPI--YCNLLAYSSSRGFV 212 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s-~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~--~~~~l~s~~~d~~v 212 (421)
.+..+.-++....+++ | .. ..+++||++...+.+....++.-.+. .-.-.++++.|-|. . ..|++++.-+.|
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqv 228 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQV 228 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeE
Confidence 3444555555455544 6 66 78999999854333332222211111 01234668889887 5 889999999999
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE-EeeccC
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEH 290 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~ 290 (421)
|+||.+.++.. +..+.. ...+++++...|+|++|++|.. +.+..||++. +..... +.+-.+
T Consensus 229 R~YDt~~qRRP---V~~fd~-------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 229 RLYDTRHQRRP---VAQFDF-------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITG 291 (412)
T ss_pred EEecCcccCcc---eeEecc-------------ccCcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccC
Confidence 99999976533 233332 2568999999999999999987 9999999997 554433 666666
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+ .++..+|.+++|++++-|..+||+|+++.
T Consensus 292 si---------------rsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 292 SI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred Cc---------------ceEEEcCCCceEEeeccceeEEEeecccc
Confidence 54 78999999999999999999999999985
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.9e-10 Score=101.43 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=145.6
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc--
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-- 110 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 110 (421)
..++..++ +++|.++|.+. +..++|++..... ..+... ...+.+.+++.+.++.+-.-
T Consensus 35 ~~~~v~~~--S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~----------------~~~~~L~fSP~g~yL~T~e~~~ 95 (566)
T KOG2315|consen 35 RPCNVFAY--SNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL----------------KKTYDLLFSPKGNYLLTWEPWA 95 (566)
T ss_pred CcceeEEE--cCCCcEEEEEc-CCeEEEEEccCCcEEEEecc----------------ceeeeeeecccccccccccccc
Confidence 34455555 67777776655 5689999988774 222111 13344555555555544222
Q ss_pred ------ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644 111 ------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184 (421)
Q Consensus 111 ------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~ 184 (421)
...-.+.+|++++. ...-.+....... +++.|++|..+.+--..+.+.+|+......... .
T Consensus 96 i~~~~~~~~pn~~v~~vet~---~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~---------k 162 (566)
T KOG2315|consen 96 IYGPKNASNPNVLVYNVETG---VQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH---------K 162 (566)
T ss_pred cccCCCCCCCceeeeeeccc---eehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee---------e
Confidence 11125678888875 3333332222222 688899877544333677899999873222222 2
Q ss_pred ccCCCeeEEEEecCC-CCeEEE-----EEcCCeEEEEECCccccc-----------ccchhhhc----------------
Q 014644 185 DLTEVITSAEFHPIY-CNLLAY-----SSSRGFVRLVDMRQSALC-----------DHSARILR---------------- 231 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~-~~~l~s-----~~~d~~v~iwd~~~~~~~-----------~~~~~~~~---------------- 231 (421)
-|...|..+.++|.. +..+++ .+.-..|+||........ ++....|.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 256678888888873 234443 234457788776521110 00000000
Q ss_pred ------c----ccccC-C-CcccccccccceeEEEEcCCCCEEEEe--cC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644 232 ------D----AAESH-G-SKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 296 (421)
Q Consensus 232 ------~----h~~~~-~-~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
+ |.... + ...+--...++|.++.|+|+|+-+++. -. -.+.|||++ +.++..+.. ++.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~e--gpR---- 314 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPE--GPR---- 314 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCC--CCc----
Confidence 0 00000 0 000001126899999999999888764 34 889999997 777766533 332
Q ss_pred cccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEecCCC
Q 014644 297 DLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVG 336 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~~~~ 336 (421)
..+-|+|.|++|+.++. -|.|-|||+.+.
T Consensus 315 -----------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 315 -----------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred -----------cceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 57899999999987775 478999999875
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=8.7e-11 Score=109.80 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=93.5
Q ss_pred CcceEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CC--
Q 014644 138 DFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-- 210 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~-- 210 (421)
.+.+.+++|+|||+.|+. . .++ .|++|++. +++.... ..+........|+|++ +.|+..+. ++
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l--------~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~ 302 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRL--------TNGPGIDTEPSWSPDG-KSIAFTSDRGGSP 302 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEEC--------CCCCCCCCCEEECCCC-CEEEEEECCCCCc
Confidence 344566889999997775 3 443 58888887 3333222 2333445577899999 77766553 33
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C---eEEEEECCCCCcceeEEe
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M---NLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~---~i~i~d~~~~~~~~~~~~ 286 (421)
.|.++|+..+... . +.. +...+..+.|+|+|++|+.+.. + .|.+||+.+ +. ...+.
T Consensus 303 ~iy~~d~~~~~~~----~-l~~-------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~ 362 (417)
T TIGR02800 303 QIYMMDADGGEVR----R-LTF-------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLT 362 (417)
T ss_pred eEEEEECCCCCEE----E-eec-------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEcc
Confidence 5777787654321 1 111 1345677899999999987643 3 788888875 33 23332
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecC
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG 334 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~ 334 (421)
..... ...+|+|+|++|+..+.++ .+++.+..
T Consensus 363 ~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 363 DTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 22111 3568999999988777654 35555543
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.1e-11 Score=110.65 Aligned_cols=215 Identities=13% Similarity=0.117 Sum_probs=125.1
Q ss_pred CCCCcceEEEeecCCCCEEEEE--cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d 209 (421)
..+...+.+..|+|||+.|+.. .++ .|.+||+. +++.... ..........+|+||| +.|+ +.+.+
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~-tg~~~~l--------t~~~g~~~~~~wSPDG-~~La~~~~~~ 283 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY-TQVREKV--------TSFPGINGAPRFSPDG-KKLALVLSKD 283 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC-CCCeEEe--------cCCCCCcCCeeECCCC-CEEEEEEeCC
Confidence 3556678899999999998875 343 58888887 3333222 1112234568999999 6555 45666
Q ss_pred Ce--EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644 210 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 210 ~~--v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~ 283 (421)
+. |.++|+.+++.. ++ .. +.......+|+|||+.|+..++ ..|+++|+.+ ++. .
T Consensus 284 g~~~Iy~~dl~tg~~~----~l-t~-------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~~-~ 343 (448)
T PRK04792 284 GQPEIYVVDIATKALT----RI-TR-------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GKV-S 343 (448)
T ss_pred CCeEEEEEECCCCCeE----EC-cc-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence 64 777788765422 11 11 1334567899999998876532 3566677764 443 3
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC--eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
.+....... ...+|+|||++|+..+. ++ .|.++|+.++. ...+... .......|+|+
T Consensus 344 ~Lt~~g~~~---------------~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spd-- 403 (448)
T PRK04792 344 RLTFEGEQN---------------LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPSVAPN-- 403 (448)
T ss_pred EEecCCCCC---------------cCeeECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCceECCC--
Confidence 332111111 35789999999887655 34 45667777652 2233322 22335578887
Q ss_pred ccccccceeeee-cccCc-ccC--CCC-CccccccccccCeEEEEEccC
Q 014644 361 ARRSSLSNLTRG-LYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 361 ~~~~~~~~l~~g-~~d~~-~iw--~~~-~~~~~~~~~~~~v~~~~~spd 404 (421)
++ .|+.. ..++. .+| +.. ............+...+|+|-
T Consensus 404 G~-----~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 404 GT-----MVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CC-----EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 44 44443 34444 566 222 223333333456777888873
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=4.5e-13 Score=116.20 Aligned_cols=188 Identities=10% Similarity=0.041 Sum_probs=160.5
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 268 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 268 (421)
..+.+.++.+| ..++.++..|.|..+|..++.+. ..+.. ...|.++.|-.+.+++|++...
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~----~Ei~v--------------~Etv~Dv~~LHneq~~AVAQK~ 191 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLH----FEINV--------------METVRDVTFLHNEQFFAVAQKK 191 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceee----eeeeh--------------hhhhhhhhhhcchHHHHhhhhc
Confidence 45788999999 99999999999999999998754 22333 4578999999999999999878
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
.++|||-. |..+.-++.+... ..+.|-|..-+|++++..|.++.-|+.+| ..+..+....+
T Consensus 192 y~yvYD~~--GtElHClk~~~~v----------------~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G 252 (545)
T KOG1272|consen 192 YVYVYDNN--GTELHCLKRHIRV----------------ARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAG 252 (545)
T ss_pred eEEEecCC--CcEEeehhhcCch----------------hhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCC
Confidence 99999964 7777777766643 68999999889999999999999999998 67777777778
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
.+..+...|. +..+-.|..+|+ .+| ...+.+..+..|.++|.++++.++|+++|+++ +..+.||+.
T Consensus 253 ~~~vm~qNP~-------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 253 RTDVMKQNPY-------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred ccchhhcCCc-------cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 8888888887 558899999999 999 66788889999999999999999999999988 666999974
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=8.2e-11 Score=109.80 Aligned_cols=168 Identities=16% Similarity=0.189 Sum_probs=100.5
Q ss_pred EEEeecCCCCEEEE-E-cCCc--EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCC--eEEE
Q 014644 142 NSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRL 214 (421)
Q Consensus 142 ~~l~~~~~~~~l~s-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~--~v~i 214 (421)
...+|+|||+.|+. . .++. |.++|+. +++..++ ..+.......+|+||+ +.|+..+ .++ .|.+
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~l--------t~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRI--------TRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYR 334 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEEC--------ccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 46789999998876 3 5665 7777876 3333222 3344556778999999 6666554 344 4666
Q ss_pred EECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCCCEEEEecC--C--eEEEEECCCCCcceeEEeecc
Q 014644 215 VDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 215 wd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~ 289 (421)
+|+.+++.. ++ +.. ......+|+|||++|+..+. + .|.++|+.+ ++. ..+....
T Consensus 335 ~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~~-~~lt~~~ 393 (448)
T PRK04792 335 VNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GAM-QVLTSTR 393 (448)
T ss_pred EECCCCCEE----EEecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CCe-EEccCCC
Confidence 677665421 11 111 12345689999999876532 4 455667764 432 3332211
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC--eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.. ....|+|||++|+..+. +| .+++++.. + .....+..+.+.+...+|+|.
T Consensus 394 -~d---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 394 -LD---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -CC---------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCCC
Confidence 11 24689999998876654 33 37777764 3 445555555556666777653
No 245
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-12 Score=105.29 Aligned_cols=254 Identities=16% Similarity=0.144 Sum_probs=148.6
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 106 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (421)
..-.+.|++|.| ...|.+|++|..-|.|.++.-+... .+.+..+..++.-+
T Consensus 23 ~tead~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF------------------------ 76 (460)
T COG5170 23 STEADKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF------------------------ 76 (460)
T ss_pred ccccceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhcccccch------------------------
Confidence 344678999999 7789999999999999999855432 22222222222100
Q ss_pred ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC---CCEEEEEcCCcEEEEeCCCC--------------
Q 014644 107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSADDLRINLWNLEIS-------------- 169 (421)
Q Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~d~~i~lwd~~~~-------------- 169 (421)
.-++.+ .-...|..+.|..+ ..+|+++.|.+|++|.+...
T Consensus 77 ---------------------DYLkSl--eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~ 133 (460)
T COG5170 77 ---------------------DYLKSL--EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF 133 (460)
T ss_pred ---------------------hhhhhc--cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc
Confidence 111111 22345777777654 34677779999999988632
Q ss_pred ----c-ee--------------eeeeecCCC--CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchh
Q 014644 170 ----D-QC--------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 228 (421)
Q Consensus 170 ----~-~~--------------~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 228 (421)
+ .. ..++..++. ....|...|.++.|+.|. ..+++ +.|-.|.+|++...... ..
T Consensus 134 ~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~s---Fn 208 (460)
T COG5170 134 HSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGS---FN 208 (460)
T ss_pred ccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCc---eE
Confidence 0 00 011111222 124677888999999987 66665 46778999988753211 12
Q ss_pred hhccccccCCCcccccccccceeEEEEcCCCC-EEE-EecCCeEEEEECCCCCcceeE---EeeccCcccccccccCCCc
Q 014644 229 ILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL-SRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDS 303 (421)
Q Consensus 229 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~-~~~~~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 303 (421)
+.+. .|. -+.....-|++..|+|... .+. +.+.|.|++-|++...-+... +......+. .-+-.+.
T Consensus 209 IVDi---KP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~---~~ff~ei 279 (460)
T COG5170 209 IVDI---KPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD---VDFFEEI 279 (460)
T ss_pred EEec---cCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc---chhHHHH
Confidence 2111 011 1112245688999999644 333 444599999999842211111 111100000 0000111
Q ss_pred ceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 304 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 304 ~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
+-.+..+.|+++|++|++-+. -+++|||++.....+.++..|.
T Consensus 280 vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 280 VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 112368899999999987765 7899999998877777776664
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.2e-10 Score=109.12 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=128.3
Q ss_pred CCCCcceEEEeecCCCCEEEEE--cC--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~--~d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d 209 (421)
..+...+...+|+|||+.|+.. .+ ..|.+|++. +++...+ ....+.+....|+|+| +.|+ +.+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-~g~~~~l--------~~~~g~~~~~~~SpDG-~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-TGRREQI--------TNFEGLNGAPAWSPDG-SKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-CCCEEEc--------cCCCCCcCCeEECCCC-CEEEEEEccC
Confidence 3566788999999999998764 33 368889998 3433322 1222345578999999 6665 45455
Q ss_pred C--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644 210 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 210 ~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~ 283 (421)
+ .|.+||+.++... . +.. +........|+|||+.|+..++ ..|+++|+.. ++. .
T Consensus 265 g~~~Iy~~d~~~~~~~----~-lt~-------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~~-~ 324 (430)
T PRK00178 265 GNPEIYVMDLASRQLS----R-VTN-------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GRA-E 324 (430)
T ss_pred CCceEEEEECCCCCeE----E-ccc-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence 5 6888898876432 1 111 1334566789999998876543 3577778764 443 2
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-C--eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
.+....... ....|+|+|++|+..+.+ + .|.+||+.++.. ..+.. ........|+|+
T Consensus 325 ~lt~~~~~~---------------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spd-- 384 (430)
T PRK00178 325 RVTFVGNYN---------------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPN-- 384 (430)
T ss_pred EeecCCCCc---------------cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCC--
Confidence 222111111 357899999999877653 3 588899887632 22222 223345678887
Q ss_pred ccccccceeeeec-ccCc-ccC--CCCC-ccccccccccCeEEEEEccC
Q 014644 361 ARRSSLSNLTRGL-YRQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 361 ~~~~~~~~l~~g~-~d~~-~iw--~~~~-~~~~~~~~~~~v~~~~~spd 404 (421)
|+ .++..+ ..+. +++ ...+ ...........+...+|+|-
T Consensus 385 g~-----~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GT-----MLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CC-----EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 44 454443 3344 566 2222 22222233455677788874
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=7.4e-10 Score=100.04 Aligned_cols=299 Identities=11% Similarity=0.081 Sum_probs=156.3
Q ss_pred ccccccccccEE-EEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644 26 YLKSLEIEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 104 (421)
Q Consensus 26 ~~~~~~h~~~V~-~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 104 (421)
.+..+.....+. .+.| ++|++++.+++.||.|.++|+.+.+..
T Consensus 28 ~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v---------------------------------- 71 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVV---------------------------------- 71 (369)
T ss_dssp EEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEE----------------------------------
T ss_pred EEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEE----------------------------------
Confidence 344444333443 3566 899999999999999999999987621
Q ss_pred eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
+.+ .. ......+++++||++++++ .++.+.++|.+ +.+.++.+......
T Consensus 72 --------------------------~~i-~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 72 --------------------------ATI-KV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMP 122 (369)
T ss_dssp --------------------------EEE-E--SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-
T ss_pred --------------------------EEE-ec-CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeeccccccc
Confidence 111 11 1235789999999999986 79999999998 55666655322111
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
.......+.++..+|.. ..++..- ..+.|.+-|........ ...+.. ........|+|+++|
T Consensus 123 ~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRY 185 (369)
T ss_dssp TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSE
T ss_pred ccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccce
Confidence 11234567888888887 5455444 45888888877643210 112222 345678899999999
Q ss_pred EEEe-cC-CeEEEEECCCCCcceeEEeeccCccc-ccccccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCC
Q 014644 262 LLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRP-KLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 262 l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
++.+ .. +.|-++|.++ ++.+..+.....+.+ +.....+.. ....|.. .+...++.-....+.+||....
T Consensus 186 ~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred eeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC
Confidence 8776 33 8999999986 666555443211100 000000000 1122221 2222222222345556777766
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeee---ccc-Cc-ccCCCCCcc-ccccc--cccCeEEEEEccCCCeE
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---LYR-QA-HENSSSGHH-ELSYN--LSSKLLHLAWHPTTNLI 408 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~d-~~-~iw~~~~~~-~~~~~--~~~~v~~~~~spd~~~l 408 (421)
+....+.....+ --+..+|+ ++ ++... +.+ +. .+++...+. ...+. ....+..+.|++||+.+
T Consensus 260 -kvv~~I~~~G~g-lFi~thP~--s~-----~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 260 -KVVKTIPTQGGG-LFIKTHPD--SR-----YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -SEEEEEE-SSSS---EE--TT---S-----EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred -eEEEEEECCCCc-ceeecCCC--Cc-----cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 556666665554 44555666 22 55444 222 22 455333221 11221 22348899999999987
Q ss_pred EEec--CC-ceEEEeC
Q 014644 409 ACAN--GN-SLFFHYA 421 (421)
Q Consensus 409 a~~~--~~-~~~i~~~ 421 (421)
..+. .+ .|.+|++
T Consensus 331 ~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEE--TTEEEEEET
T ss_pred EEEEecCCCEEEEEEC
Confidence 6655 44 6999875
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2e-10 Score=102.65 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=171.6
Q ss_pred ccCCCCceeeeccccccCCCccccccc-----cc-cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCC
Q 014644 4 TSTSHPEYRYKTEFQSHEPEFDYLKSL-----EI-EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH 77 (421)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h-~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~ 77 (421)
.+++.|+|.............--+..+ .| ...|..+..+ +.|-..++-=..|.+|.+....... ..+. .
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~h-y~~R---I 132 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRH-YRTR---I 132 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEe-ccchhhheEeecCceeeehhhcCee-eeee---c
Confidence 356778888877755443322112211 22 2234444433 3343444455567777665533221 1111 1
Q ss_pred CCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-
Q 014644 78 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA- 156 (421)
Q Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~- 156 (421)
+..-.+|+++.++-.+++.+.. ..+.=.+++.+ +-+..| .-..+.++++..++...+|++|
T Consensus 133 P~~GRDm~y~~~scDly~~gsg--------------~evYRlNLEqG---rfL~P~-~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG--------------SEVYRLNLEQG---RFLNPF-ETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred CcCCccccccCCCccEEEeecC--------------cceEEEEcccc---cccccc-ccccccceeeeecCccceEEecc
Confidence 1122234444333333333221 12222344444 555555 5556889999999999999999
Q ss_pred cCCcEEEEeCCCCceeeeeeecCCCCCCccCC-----CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhc
Q 014644 157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231 (421)
Q Consensus 157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 231 (421)
.+|.|..||.+ ....+..++... ....|.+ .|+++.|+-+| -.+++|+.+|.+.|||++..+.... .
T Consensus 195 ~~g~VEfwDpR-~ksrv~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----k 266 (703)
T KOG2321|consen 195 EDGVVEFWDPR-DKSRVGTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----K 266 (703)
T ss_pred cCceEEEecch-hhhhheeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----c
Confidence 89999999998 555555554332 2333443 49999999998 8999999999999999999764421 1
Q ss_pred cccccCCCcccccccccceeEEEEcCC--CCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeE
Q 014644 232 DAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 309 (421)
Q Consensus 232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.| ...-+|..+.|.+. +..+++.....++|||-.+ +++...+...... ..
T Consensus 267 dh-----------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND 318 (703)
T KOG2321|consen 267 DH-----------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------ND 318 (703)
T ss_pred cc-----------CCccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------Cc
Confidence 11 11457889999775 4566666658999999987 8877766544432 68
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 310 CSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 310 ~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+|+-|++.+++++-+++.+..|-+..-
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eeeecCCceEEEecCCCcceeEEcccc
Confidence 999999999999999988877766543
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4e-10 Score=104.39 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=123.8
Q ss_pred CCCcceEEEeecCCCCEE---EEE-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-
Q 014644 136 AHDFNINSISNNSDCETF---VSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS- 208 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l---~s~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~- 208 (421)
.....+.+-+|+|||+.+ +++ .++ .|.+.++. +++..++. ...+.....+|+||| +.|+..+.
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~-~g~~~~lt--------~~~g~~~~p~wSPDG-~~Laf~s~~ 251 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLE-NPAGKKIL--------ALQGNQLMPTFSPRK-KLLAFISDR 251 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECC-CCCceEee--------cCCCCccceEECCCC-CEEEEEECC
Confidence 345566788999999752 245 444 46666777 44433332 233445568999999 77766542
Q ss_pred CC----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce--EEEEECCCCCc
Q 014644 209 RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDST 280 (421)
Q Consensus 209 d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~--i~i~d~~~~~~ 280 (421)
+| .+..|++..+... ...++... ........+|+|||+.|+..++ +. |+++++...+.
T Consensus 252 ~g~~di~~~~~~~~~g~~g-~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIG-KPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCcceeEEEeecccCCCC-cceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 23 3444666543100 00111111 1123457899999998886543 54 44445432223
Q ss_pred ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644 281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA 357 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (421)
....+....... ....|+|||+.|+..+.+ ..|++||+.++.. ..+......+....|+|
T Consensus 318 ~~~~lt~~~~~~---------------~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 318 SPRLLTKKYRNS---------------SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAI 380 (428)
T ss_pred ceEEeccCCCCc---------------cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECC
Confidence 233333322211 468999999998876543 4699999987732 33333334567788988
Q ss_pred CCcccccccceee-eecccCc-ccC--CC-CCccccccccccCeEEEEEccCC
Q 014644 358 APRARRSSLSNLT-RGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTT 405 (421)
Q Consensus 358 ~~~~~~~~~~~l~-~g~~d~~-~iw--~~-~~~~~~~~~~~~~v~~~~~spd~ 405 (421)
+ ++ .|+ +...++. .+| +. ++...........+...+|+|-.
T Consensus 381 D--G~-----~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 381 D--SL-----HLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred C--CC-----EEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 8 44 444 4444444 565 32 22222233334456678888754
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.4e-08 Score=91.89 Aligned_cols=272 Identities=10% Similarity=0.107 Sum_probs=152.5
Q ss_pred CCCccccccccccccEEEEEEEEcCCCCeEEEEeC----CCcEEEeecCC--ceeEEeeecCCCCCccccccccccccee
Q 014644 21 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFM 94 (421)
Q Consensus 21 ~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~----d~~v~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 94 (421)
..++..+....-...-.-+++ ++++++|.++.. ++.|..|++.. +++..+......+ ....
T Consensus 24 ~g~l~~~~~~~~~~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----------~~p~ 90 (345)
T PF10282_consen 24 TGTLTLVQTVAEGENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----------SSPC 90 (345)
T ss_dssp TTEEEEEEEEEESSSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----------SCEE
T ss_pred CCCceEeeeecCCCCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----------CCcE
Confidence 334444443333444566777 688888887766 57999999876 4555444332111 1122
Q ss_pred eccCCCCceeeeecccccccceeEEeeccc-ceeeeeeeec---------CCCCcceEEEeecCCCCEEEEE--cCCcEE
Q 014644 95 NEHNPPSFAHGYHLEWTENMATKIANVGNS-VHARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRIN 162 (421)
Q Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~l~s~--~d~~i~ 162 (421)
.+..+++..++...... .+.+.++++... ........+. +.......++.++|+++++++. ....|.
T Consensus 91 ~i~~~~~g~~l~vany~-~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYG-GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEECTTSSEEEEEETT-TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEEcc-CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 23444555555544332 334555655542 1122222110 1234567899999999988886 566899
Q ss_pred EEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECC--cccccccchhhhccccccCC
Q 014644 163 LWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QSALCDHSARILRDAAESHG 238 (421)
Q Consensus 163 lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~--~~~~~~~~~~~~~~h~~~~~ 238 (421)
+|+++.... +.....+ .+ ......+.++|+|++ ++++.. ..+++|.++++. .+... ....... .+.
T Consensus 170 ~~~~~~~~~~l~~~~~~---~~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~---~~~ 239 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSI---KV-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLT--EIQTIST---LPE 239 (345)
T ss_dssp EEEE-TTS-TEEEEEEE---EC-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---CET
T ss_pred EEEEeCCCceEEEeecc---cc-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCcee--EEEEeee---ccc
Confidence 999974432 2211100 11 233456899999999 666544 577899999988 33211 1111111 000
Q ss_pred CcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCC-Ccc--eeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644 239 SKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 313 (421)
Q Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 313 (421)
-+. .......++++|||++|.++.. +.|.+|++... +.. +..+....... +.++++
T Consensus 240 ---~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---------------r~~~~s 300 (345)
T PF10282_consen 240 ---GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---------------RHFAFS 300 (345)
T ss_dssp ---TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---------------EEEEE-
T ss_pred ---ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---------------cEEEEe
Confidence 000 1236789999999999987643 89999999532 322 22222212211 689999
Q ss_pred CCCCEEEEee-CCCeEEEEecCC
Q 014644 314 GDGLHFATGS-YSNLLRIFSHGV 335 (421)
Q Consensus 314 p~~~~l~~~s-~dg~i~iwd~~~ 335 (421)
|+|++|+++. .++.|.+|+++.
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEecCCCeEEEEEEeC
Confidence 9999998877 467899998753
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=6e-09 Score=88.65 Aligned_cols=204 Identities=9% Similarity=0.083 Sum_probs=129.1
Q ss_pred ccceeEEeeccccee-eeeeeecCCCCcceEEEeecCCCCEEEEE--c--CCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 113 NMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
..-+..|++++.... ..++. -.+.+.++-|+|+|+++.|.++ . +|.|--|.++.....+..+.. .... .
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~~~--g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QTLP--G 88 (346)
T ss_pred CCceEEEEEeCcccccchhhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cccC--C
Confidence 346788888743221 22222 3567788999999999999986 3 688988888843233333321 1112 2
Q ss_pred CCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 188 EVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
.+...+++++++ ++++++. .-|.|.++-++............. |. .+... ......-+....+.|++++|++.+
T Consensus 89 ~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~-g~~p~--~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 89 SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HT-GSGPH--ERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeee-cC-CCCCC--ccccCCccceeeeCCCCCEEEEee
Confidence 334889999999 8888877 458999999876332222212111 11 11000 011122378899999999999875
Q ss_pred C--CeEEEEECCCCCcceeE----EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCc
Q 014644 267 Y--MNLKLWDIRMDSTPVAT----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAG 339 (421)
Q Consensus 267 ~--~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~ 339 (421)
- ..|.+|++. ++..... ++...++ +.+.|+|++++.+...+ +++|.+|..+.....
T Consensus 164 LG~Dri~~y~~~-dg~L~~~~~~~v~~G~GP----------------RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 164 LGTDRIFLYDLD-DGKLTPADPAEVKPGAGP----------------RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred cCCceEEEEEcc-cCccccccccccCCCCCc----------------ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 4 689999997 3543221 2222222 68999999999887776 899999999875344
Q ss_pred eeEEe
Q 014644 340 GITVE 344 (421)
Q Consensus 340 ~~~~~ 344 (421)
...++
T Consensus 227 ~~~lQ 231 (346)
T COG2706 227 FEELQ 231 (346)
T ss_pred EEEee
Confidence 44444
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=9.2e-11 Score=111.74 Aligned_cols=191 Identities=15% Similarity=0.079 Sum_probs=143.7
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
....+.-.. ..++.++.+..+.+||...+....+ +... .+ ..-....-+-++++.-++++|+- +.
T Consensus 91 ~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~---i~~~------er----~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 91 FGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSK---IQSD------ER----CTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred cccchhhhc-ceEEEEEcCceEEEEecccCceehh---cCCC------ce----EEEEeEEEEeccCcEEEEEecccccc
Confidence 333344444 6788888899999999887654311 1100 00 00112334456777788999987 99
Q ss_pred EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644 270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 349 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 349 (421)
|.+|+..-...+. .+.+|++.+ +++.++-||+++++.|+|.++|+|++++.+....+.-+|+..
T Consensus 157 iivW~~~~dn~p~-~l~GHeG~i---------------F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 157 IIVWKPHEDNKPI-RLKGHEGSI---------------FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEEEeccccCCcc-eecccCCce---------------EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 9999997434444 688999865 799999999999999999999999999986667788899999
Q ss_pred ccceeeecCCcccccccceeeeecccCc-ccCC-CCCcccccccc-ccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNL-SSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~-~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
+....+.+. .+++++.|-+ ++|. .+..+....+| .+.++.++.+++..++++++ ++++.+|+
T Consensus 221 vw~~~~~~n---------~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 221 VWACCFLPN---------RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEEeccc---------eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999988 7999999999 9993 33344455566 45699999999999999888 55688875
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.8e-09 Score=100.03 Aligned_cols=178 Identities=16% Similarity=0.103 Sum_probs=104.0
Q ss_pred CcceEEEeecCCCCEEEEE--cCC----cEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-c
Q 014644 138 DFNINSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S 208 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~--~d~----~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~ 208 (421)
.+.....+|+|||+.|+.. .+| .+.+|++... +...++. .+........+|+||| +.|+..+ .
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG-~~Laf~s~~ 301 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDG-TRLVFVSNK 301 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCC-CEEEEEECC
Confidence 3445578999999988874 233 3444676531 2222222 2222344678999999 7666655 5
Q ss_pred CCeEEEEEC--CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcce
Q 014644 209 RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPV 282 (421)
Q Consensus 209 d~~v~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~ 282 (421)
+|...+|.+ ...... .+.+.. ....+....|+|||+.|+.... ..|.+||+.+ ++..
T Consensus 302 ~g~~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~~ 364 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRDY 364 (428)
T ss_pred CCCceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCeE
Confidence 665555543 321100 011111 1345678899999999886532 4799999975 5443
Q ss_pred eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.+....... ....|+|||++|+..+. ...|+++|+..+. ...+....+.+...+|+|.
T Consensus 365 -~Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 365 -QLTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKK--TRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred -EccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCcccCceecCC
Confidence 332222111 46899999998875443 3578889988652 2333334455666777654
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=1.7e-08 Score=91.27 Aligned_cols=262 Identities=9% Similarity=0.050 Sum_probs=139.2
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
.+.+.+.|..+. +.+..+ ......-..+.++|||+++.++ .|+.|.++|+. ..+.++.+. -.....
T Consensus 15 ~~~v~viD~~t~---~~~~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~--------~G~~~~ 81 (369)
T PF02239_consen 15 SGSVAVIDGATN---KVVARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIK--------VGGNPR 81 (369)
T ss_dssp GTEEEEEETTT----SEEEEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE---------SSEEE
T ss_pred CCEEEEEECCCC---eEEEEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEe--------cCCCcc
Confidence 345677777776 677776 3333333457899999999988 99999999999 556666552 123468
Q ss_pred EEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-C
Q 014644 192 SAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-M 268 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~ 268 (421)
++++++|| ++++++. ..+.+.++|.++.+.. +.+... ..+. ......+.++..+|....+ ++--+ +
T Consensus 82 ~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v----~~I~~~-~~~~-----~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 82 GIAVSPDG-KYVYVANYEPGTVSVIDAETLEPV----KTIPTG-GMPV-----DGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp EEEE--TT-TEEEEEEEETTEEEEEETTT--EE----EEEE---EE-T-----TTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred eEEEcCCC-CEEEEEecCCCceeEeccccccce----eecccc-cccc-----cccCCCceeEEecCCCCEEEEEEccCC
Confidence 89999999 7776654 7899999999886654 222220 0000 0024567888888888844 45566 8
Q ss_pred eEEEEECCCCCcce--eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEec
Q 014644 269 NLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 269 ~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
.|.+.|... ...+ ..+.....+ ....|+|++++++++ ..++.|-++|..++ .....+..
T Consensus 151 ~I~vVdy~d-~~~~~~~~i~~g~~~----------------~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~ 212 (369)
T PF02239_consen 151 EIWVVDYSD-PKNLKVTTIKVGRFP----------------HDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDT 212 (369)
T ss_dssp EEEEEETTT-SSCEEEEEEE--TTE----------------EEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-
T ss_pred eEEEEEecc-ccccceeeecccccc----------------cccccCcccceeeecccccceeEEEeeccc-eEEEEeec
Confidence 999999875 3332 233333322 588999999987665 45779999998876 33333322
Q ss_pred ----CCCCccc-------eeeecCCcccccccceeeeecccCcccCC-CCCccccccccccCeEEEEEccCCCeEEEe--
Q 014644 346 ----GKNENRK-------PILQAAPRARRSSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACA-- 411 (421)
Q Consensus 346 ----~~~~~~~-------~~~~~~~~~~~~~~~~l~~g~~d~~~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~-- 411 (421)
|..+... ..|.....+. ..+..-+.+...+|+ ..-.....+...+.-.-+..||++++|.+.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~----~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGY----FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSS----SEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T
T ss_pred cccccccccccccCCCcceEEeeccccc----eecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc
Confidence 1111111 1121111111 011122222224442 111222222222333678899999999988
Q ss_pred -c--CCceEEEe
Q 014644 412 -N--GNSLFFHY 420 (421)
Q Consensus 412 -~--~~~~~i~~ 420 (421)
+ .+.+.+++
T Consensus 289 ~~~~~~~v~viD 300 (369)
T PF02239_consen 289 LNPDADTVQVID 300 (369)
T ss_dssp T-SSHT-EEEEE
T ss_pred CCCCCceEEEEE
Confidence 3 35577765
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-10 Score=110.77 Aligned_cols=204 Identities=15% Similarity=0.094 Sum_probs=133.6
Q ss_pred eeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644 127 ARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 204 (421)
Q Consensus 127 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 204 (421)
+..+..+ ..|...|..++.++.. .++++| .||+|++|+.++-........ ...+...-..++.++.+.+.+ ..+|
T Consensus 1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-S~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-SELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-eeEEEeccCCceEEEEeccCC-CeEE
Confidence 3556666 7899999999987755 899999 999999999873221100000 001122245778999999998 9999
Q ss_pred EEEcCCeEEEEECCcccccc---cchhhhccccccCCCcccccccccceeEEEEcCC-CC-EEEEecC-CeEEEEECCCC
Q 014644 205 YSSSRGFVRLVDMRQSALCD---HSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQ-HLLSRDY-MNLKLWDIRMD 278 (421)
Q Consensus 205 s~~~d~~v~iwd~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~-~l~~~~~-~~i~i~d~~~~ 278 (421)
.++.||.|++.++....... ...+..+. ......+..-+|... +. .++.+.+ +.|..||+++
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-----------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~- 1182 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-----------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM- 1182 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccc-----------cCCCceEEeecccccccceeEEEEEeccceEEecchh-
Confidence 99999999999987631110 00011111 001112333334332 33 6667777 9999999986
Q ss_pred CcceeEEee--ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644 279 STPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 356 (421)
Q Consensus 279 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (421)
.....+++. ..+.+ ++++.+|.+.+++.|+..|.+.+||++-+......-.++..+++.+..+
T Consensus 1183 ~~~~w~lk~~~~hG~v---------------TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLV---------------TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred hhhHHhhhcCccccce---------------eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 444333332 22222 7999999999999999999999999997633334444566788888888
Q ss_pred cCCc
Q 014644 357 AAPR 360 (421)
Q Consensus 357 ~~~~ 360 (421)
+-.+
T Consensus 1248 ~~~~ 1251 (1431)
T KOG1240|consen 1248 PTYP 1251 (1431)
T ss_pred ccCC
Confidence 7754
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=5.3e-10 Score=106.70 Aligned_cols=149 Identities=12% Similarity=0.101 Sum_probs=119.5
Q ss_pred eecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644 145 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 223 (421)
Q Consensus 145 ~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~ 223 (421)
-++++.-++++| --+.|.+|+........ .+.+|.+.|.++.|+.+| .++++.|+|.++|+|++.+.+..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence 346667788888 89999999988433333 247999999999999999 99999999999999999987643
Q ss_pred ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCC
Q 014644 224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND 302 (421)
Q Consensus 224 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
. -. .-+|...+..+.|.|+ .+++++. -+.++|+.+ +..+..+..|...
T Consensus 211 ~---~~-------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~----------- 259 (967)
T KOG0974|consen 211 G---CT-------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK----------- 259 (967)
T ss_pred C---cc-------------cccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence 1 11 1345889999999998 7777655 999999875 6666677777653
Q ss_pred cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 303 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 303 ~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+..++..++...++|++.||.+++|++...
T Consensus 260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2378999999999999999999999998764
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.9e-10 Score=104.24 Aligned_cols=242 Identities=8% Similarity=0.057 Sum_probs=159.6
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec-------CCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
.....|+.|+....+++.| .||.+++..+.+...-.+.-.+ -.+++.+|.+.|.-+.|+.+. +.|-++..+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence 4457899999999999998 9999999987643221111110 115679999999999999997 889999999
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcc-eeEEee
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP-VATFKI 287 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~-~~~~~~ 287 (421)
|.|.+|-+-.+..+.+. +.. ...+.|.+++|..||..|+..- ||.|.+=.+.. .+. -+.+++
T Consensus 93 GlIiVWmlykgsW~EEM---iNn------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg 156 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEM---INN------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG 156 (1189)
T ss_pred ceEEEEeeecccHHHHH---hhC------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch
Confidence 99999999888755221 111 1146789999999999988763 47776666542 111 111222
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC------ceeEEec----CCCCccceeeec
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA------GGITVEA----GKNENRKPILQA 357 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~----~~~~~~~~~~~~ 357 (421)
..- ..+.|++|.+.+..+-.+|.+.++|.+..-. ......+ ....+..+.|..
T Consensus 157 ~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 157 QLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred hec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 211 4789999999988899999999999764310 0011111 111133333322
Q ss_pred CCccccc-ccceeeeecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEecC
Q 014644 358 APRARRS-SLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 413 (421)
Q Consensus 358 ~~~~~~~-~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~ 413 (421)
..-+.+. .-+.|+....+|. .|- ..........+....|....|+++|..||+++.
T Consensus 220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccC
Confidence 1111110 1347888888888 777 333344444555678899999999999998873
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=6.9e-10 Score=99.71 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=114.5
Q ss_pred CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644 149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 227 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 227 (421)
|...++-| ..|.|.+|++. .++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~---- 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII---- 137 (541)
T ss_pred CceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----
Confidence 45566668 89999999998 45544433 225799999999999887 89999999999999999886544
Q ss_pred hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceee
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 307 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+.. ....+.+++.+|||..+++++ ++|++||+++ ++.+..|.+|..++
T Consensus 138 ~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v--------------- 187 (541)
T KOG4547|consen 138 RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV--------------- 187 (541)
T ss_pred eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce---------------
Confidence 44443 256789999999999999988 7999999997 99999999999987
Q ss_pred eEEEEcCC-----CCEEEEe-eCCCeEEEEecCC
Q 014644 308 FECSVSGD-----GLHFATG-SYSNLLRIFSHGV 335 (421)
Q Consensus 308 ~~~~~sp~-----~~~l~~~-s~dg~i~iwd~~~ 335 (421)
.+++|.-+ |.++.++ ..+..|.+|-+..
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 56666655 6776654 3456677887765
No 259
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.20 E-value=6.1e-10 Score=90.04 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=97.3
Q ss_pred CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-----cCC
Q 014644 137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRG 210 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-----~d~ 210 (421)
|.++-.+-+.+-.++.++++ .||.+.+.+.+...+....+ +.....-.+.+....+ +.+.++. .-+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-------~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-------PSIHSGSASRKICRHG-NSILSGGCGNWNAQD 159 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-------ccccccccccceeecc-cEEecCCcceEeecc
Confidence 44333333334456778888 99999999987322222111 1111111223333344 4444332 223
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcceeEEeec
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~~~~~~~ 288 (421)
..+.|+++..+... .. ......|.+++-+|..+.+ ++|++ |.+-+||++....++..+..|
T Consensus 160 ~~~a~~~~p~~t~~------~~-----------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah 222 (319)
T KOG4714|consen 160 NFYANTLDPIKTLI------PS-----------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH 222 (319)
T ss_pred ceeeeccccccccc------cc-----------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh
Confidence 44556655432110 00 0002348899999976655 45666 999999999766677778888
Q ss_pred cCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCC
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~ 335 (421)
+..+ +.+-|+| ++..|+++++||.+..||..+
T Consensus 223 k~~i---------------~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEI---------------WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhh---------------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8765 7899999 578899999999999999775
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=7.7e-11 Score=104.89 Aligned_cols=287 Identities=18% Similarity=0.189 Sum_probs=170.9
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 109 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (421)
.||+++|.++.-. .+.+-+++++.|++|++|.+....-. + .
T Consensus 732 ~GH~~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~-~----~-------------------------------- 772 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDE-I----G-------------------------------- 772 (1034)
T ss_pred cCcHHHhHHHHhc--ccccceeeccCCceEEEEEeccccCc-c----c--------------------------------
Confidence 4899999998773 56788999999999999998753200 0 0
Q ss_pred cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
+..|..++ +.|+.+|.++.|-.+-++++++ |+-|.+||.-.+..+.+..+ ....+.
T Consensus 773 ----------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~d------apk~~a 828 (1034)
T KOG4190|consen 773 ----------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMED------APKEGA 828 (1034)
T ss_pred ----------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhc------CcccCC
Confidence 01577778 8999999999999888777665 66799999873332222221 111222
Q ss_pred eeEEEEecC-CCCeEEE-EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 190 ITSAEFHPI-YCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 190 v~~~~~~p~-~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
+..+..-|+ ...++.. ++...+|+++|.+......+. ++-.. .+.+..+.+++..+.|++++++-.
T Consensus 829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-kVcna-----------~~Pna~~R~iaVa~~GN~lAa~LS 896 (1034)
T KOG4190|consen 829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL-KVCNA-----------PGPNALTRAIAVADKGNKLAAALS 896 (1034)
T ss_pred CceeEecccCcchheeeeccchhhheeeecccccceeeE-EeccC-----------CCCchheeEEEeccCcchhhHHhc
Confidence 333333343 2134444 468899999999986543111 11111 122467889999999999999844
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE-EecCCCCCceeEEec
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI-FSHGVGSAGGITVEA 345 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~ 345 (421)
|.|-+.|.++ ++++..++..+-.. ..++ .|..+.|+....|.++.+ |-...+ ........
T Consensus 897 nGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kp 958 (1034)
T KOG4190|consen 897 NGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKP 958 (1034)
T ss_pred CCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCC
Confidence 9999999997 88877665544211 2222 345566777777777777 765544 21111111
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCcc-------ccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHH-------ELSYNLSSKLLHLAWHPTTNLIACAN-GNS 415 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~-------~~~~~~~~~v~~~~~spd~~~la~~~-~~~ 415 (421)
...+.. |-.+ .+..|++.-.... .++ +..+.. .....+.+..+.++--|-+..+..|+ .+.
T Consensus 959 ppepah---flqs------vgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 959 PPEPAH---FLQS------VGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred CCcchh---hhhc------cCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence 111110 0000 0113333333333 455 222211 11224566778888888887777776 455
Q ss_pred eEE
Q 014644 416 LFF 418 (421)
Q Consensus 416 ~~i 418 (421)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 554
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.7e-09 Score=93.98 Aligned_cols=193 Identities=14% Similarity=0.123 Sum_probs=137.6
Q ss_pred CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE------ecC-------------CCCeEEEEE
Q 014644 148 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF------HPI-------------YCNLLAYSS 207 (421)
Q Consensus 148 ~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~-------------~~~~l~s~~ 207 (421)
|...++|.. .||.+++|+... .+...-+... ..-++...+..| +|. +...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 456788888 999999999984 4333322100 111223333333 221 114677888
Q ss_pred cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644 208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~ 286 (421)
..|.|.+|++..++.. ..+.. .+|.+.|+++.++.+-..|.+++. ..+..|+... ....+.+.
T Consensus 78 ~~g~v~~ys~~~g~it----~~~st-----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~ 141 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEIT----AKLST-----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWK 141 (541)
T ss_pred CCccEEEEEecCCeEE----EEEec-----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeec
Confidence 9999999999988754 22222 456889999999998888888765 9999999985 88888887
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 366 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (421)
.....+ .+++.+|||+.+++++ +.|++||+++. +....+.+|.++|+.+.|...-.|.. +.
T Consensus 142 ~~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~-G~ 202 (541)
T KOG4547|consen 142 EQKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGII-GK 202 (541)
T ss_pred cCCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccc-cc
Confidence 776654 6899999999998887 69999999997 88999999999999999986622221 12
Q ss_pred ceeeeecccCc-ccC
Q 014644 367 SNLTRGLYRQA-HEN 380 (421)
Q Consensus 367 ~~l~~g~~d~~-~iw 380 (421)
.+|.+...... .+|
T Consensus 203 ~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 203 YVLSSAAAERGITVW 217 (541)
T ss_pred eeeeccccccceeEE
Confidence 34555555555 788
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=1.2e-08 Score=84.09 Aligned_cols=243 Identities=14% Similarity=0.079 Sum_probs=146.7
Q ss_pred CcceEEEeecC---CCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 138 DFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 138 ~~~v~~l~~~~---~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
+..++.+.|.- +|. .++-+ .+|.|.++...........-.++...+. .....++.|++.+ ..++++-.+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~-~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSG-TKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccC-ceEEEEcCCCcE
Confidence 34566777753 555 34446 8899999987633332222111111111 1124677899988 888888888988
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeE-Eeecc
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE 289 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~ 289 (421)
.+-+.....+ +..+.+.. |+-++...+|+.. .+++.+|++ +.+..||++.+++.+.. .+.|.
T Consensus 146 ~~v~~t~~~l--e~vq~wk~-------------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 146 SGVYETEMVL--EKVQTWKV-------------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred EEEecceeee--eecccccc-------------cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence 8555443321 12234555 4788899999875 456678877 99999999965555444 45565
Q ss_pred CcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccce
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 368 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (421)
..+ .++.-+| .+.+|++|++|-.|++||.++-++.+..- .-.+.|..+...|....+ +
T Consensus 211 ~GV---------------~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~-----l 269 (339)
T KOG0280|consen 211 SGV---------------VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHR-----L 269 (339)
T ss_pred cce---------------EEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhH-----H
Confidence 543 5665555 58899999999999999999653433221 122678888888775444 4
Q ss_pred eeeecccCcccC----CCCC---ccccccccccCeEEEEEccCCCeEEEec--CCceE-EE
Q 014644 369 LTRGLYRQAHEN----SSSG---HHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLF-FH 419 (421)
Q Consensus 369 l~~g~~d~~~iw----~~~~---~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~-i~ 419 (421)
|++.-.+|.++- ...+ .......|.+-+..-.|......||+++ +..++ +|
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 666666665444 2222 1112223444445555644446688766 44434 55
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1e-08 Score=84.61 Aligned_cols=159 Identities=11% Similarity=0.027 Sum_probs=112.2
Q ss_pred ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644 140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 218 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~ 218 (421)
...++.|++.+..++++ .+|.+.+-+.. ...+.+. ++++.|...++-..|+...++++++|+.|+.+..||+|
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 35678899999999999 89998854443 1222221 25588999999999999888999999999999999999
Q ss_pred cccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644 219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 296 (421)
Q Consensus 219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.... .+|.. -+-|...|.+|.-+| .+.+|++|+. ..|++||.++-++++..-....
T Consensus 197 ~p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G------- 254 (339)
T KOG0280|consen 197 IPKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG------- 254 (339)
T ss_pred CCcc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc-------
Confidence 4321 22221 123467888888886 5779999987 8999999996577765443332
Q ss_pred cccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEEecCCC
Q 014644 297 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+|+.+.++|. ++.|+++-.+| .+|-+++.+
T Consensus 255 ---------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 255 ---------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred ---------ceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 3478999985 34454444443 556666654
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2e-08 Score=90.03 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=94.9
Q ss_pred CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE--EEcCCeEEEEECCcccccccchhhhccccc
Q 014644 158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAE 235 (421)
Q Consensus 158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~ 235 (421)
..++++.+++ +....-. -...++|.++.|+|++ +.++. |-.--.+.|+|++..- +++.
T Consensus 250 Eq~Lyll~t~-g~s~~V~--------L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-------v~df--- 309 (566)
T KOG2315|consen 250 EQTLYLLATQ-GESVSVP--------LLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-------VFDF--- 309 (566)
T ss_pred cceEEEEEec-CceEEEe--------cCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-------eEeC---
Confidence 3468888887 3322211 1246899999999999 55443 4467789999998632 2222
Q ss_pred cCCCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEE
Q 014644 236 SHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 311 (421)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++-+.+-|+|.|++|+.+ .- |.|-+||+.+ .+.+..+..... +-+.
T Consensus 310 ----------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~e 361 (566)
T KOG2315|consen 310 ----------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFE 361 (566)
T ss_pred ----------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEE
Confidence 14567899999999998764 23 9999999987 777777776554 4589
Q ss_pred EcCCCCEEEEeeC------CCeEEEEecCC
Q 014644 312 VSGDGLHFATGSY------SNLLRIFSHGV 335 (421)
Q Consensus 312 ~sp~~~~l~~~s~------dg~i~iwd~~~ 335 (421)
|+|||++++|++. |+.++||+...
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999998874 78899999763
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2e-07 Score=83.60 Aligned_cols=323 Identities=17% Similarity=0.216 Sum_probs=186.1
Q ss_pred EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644 36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 115 (421)
Q Consensus 36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 115 (421)
-+-+.| +|-|.+|+|--.-| |.+|-=.+ ..++..+.|++ |.-+.|+|.+..+..-+..+...- -+ -+....
T Consensus 213 etyv~w--SP~GTYL~t~Hk~G-I~lWGG~~--f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~--~~-d~e~~~ 283 (698)
T KOG2314|consen 213 ETYVRW--SPKGTYLVTFHKQG-IALWGGES--FDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVE--ED-DNEGQQ 283 (698)
T ss_pred eeeEEe--cCCceEEEEEeccc-eeeecCcc--HHHHHhccCCC-ceeeecCCccceEEEecCCccccC--cc-cCCCce
Confidence 367899 78899999887654 78896333 23333444443 333334443333333222211100 00 112238
Q ss_pred eeEEeecccceeeeeeeecCC--CCcce-EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644 116 TKIANVGNSVHARCQKVYPHA--HDFNI-NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 192 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~--h~~~v-~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 192 (421)
+.+||+.++ ...+.+ .. ....+ --..||.|++++|--.-.+|.||+.. . +..++.++.+ -..|..
T Consensus 284 l~IWDI~tG---~lkrsF-~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp-s---f~lld~Kslk----i~gIr~ 351 (698)
T KOG2314|consen 284 LIIWDIATG---LLKRSF-PVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP-S---FMLLDKKSLK----ISGIRD 351 (698)
T ss_pred EEEEEcccc---chhcce-eccCCCccccceEEeccCCceeEEeccceEEEEecC-c---eeeecccccC----CccccC
Confidence 999999998 555555 22 11222 23579999999998644689999876 2 2233223222 245788
Q ss_pred EEEecCCCCeEEEEEcC-----CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-
Q 014644 193 AEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 266 (421)
Q Consensus 193 ~~~~p~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 266 (421)
..|+|.+ ++||.-... ..+.+-.+.+++.+ +.-..| +-.-..+.|-.+|.+|+.--
T Consensus 352 FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nlf-------------nVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 352 FSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNLF-------------NVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred cccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccce-------------eeeccEEEeccCCcEEEEEEE
Confidence 8999998 888765421 35666666665433 222221 22335677888899998521
Q ss_pred ---------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEec
Q 014644 267 ---------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSH 333 (421)
Q Consensus 267 ---------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~ 333 (421)
. ..+.|+.++...-++......... ..++|-|.|..+++-+. ..++.+|.+
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEe
Confidence 1 346677776434445555443332 68999999887765543 457889988
Q ss_pred CC-CCCceeEEecCCCCccceeeecCCcccccccceeeee---cccCc-ccCCCC--CccccccccccCeEEEEEccCCC
Q 014644 334 GV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---LYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTN 406 (421)
Q Consensus 334 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~ 406 (421)
++ ......+..-.....+.+-|+|. |+ +++.+ +..|. ..++.. +.......-....+.+.|.|.|+
T Consensus 478 e~~~~~~~lVk~~dk~~~N~vfwsPk--G~-----fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR 550 (698)
T KOG2314|consen 478 ETNIKKPSLVKELDKKFANTVFWSPK--GR-----FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR 550 (698)
T ss_pred ecCCCchhhhhhhcccccceEEEcCC--Cc-----EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence 84 22222222333356678889988 55 55444 33344 444433 22221111223456789999999
Q ss_pred eEEEec-------CCceEEEe
Q 014644 407 LIACAN-------GNSLFFHY 420 (421)
Q Consensus 407 ~la~~~-------~~~~~i~~ 420 (421)
++++++ +++.+||+
T Consensus 551 YvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 551 YVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred EEEEeeehhhhccccceEEEE
Confidence 999886 35666664
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=8.4e-09 Score=86.86 Aligned_cols=242 Identities=9% Similarity=0.046 Sum_probs=169.5
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.||.+.|++... -|...-+++.+.|.++|||--.+ ++.
T Consensus 21 eG~~d~vn~~~l--~~~e~gv~~~s~drtvrv~lkrds~q~--------------------------------------- 59 (404)
T KOG1409|consen 21 EGSQDDVNAAIL--IPKEEGVISVSEDRTVRVWLKRDSGQY--------------------------------------- 59 (404)
T ss_pred cCchhhhhhhee--ccCCCCeEEccccceeeeEEecccccc---------------------------------------
Confidence 478888998877 46677899999999999997433 220
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 187 (421)
| ..+......+++++.+.++...|+.| +.|++.-+.+...-...... .....|.
T Consensus 60 ----------w-----------psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~----r~~~~h~ 114 (404)
T KOG1409|consen 60 ----------W-----------PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL----KDYLAHQ 114 (404)
T ss_pred ----------C-----------chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh----hhhhhhh
Confidence 0 00002345678899999999999999 99999999876322222111 2336799
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
..+..+-|+-.. ..+++.+.|..+.---.+.+...... .+. ....++.+.-. +...|..
T Consensus 115 ~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y--~~~----------------~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 115 ARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGY--NFE----------------TPASALQFDAL--YAFVGDH 173 (404)
T ss_pred cceeeEEecCCc-eeEEEeccccceEEEeeccCCcccce--Eee----------------ccCCCCceeeE--EEEeccc
Confidence 999999998776 88999999987764444444322110 011 11122222211 4445544
Q ss_pred -CeEEEEECCC-CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 268 -MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 268 -~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
|.|.+-.+.. .-.++.++.+|...+ .+++|.|..+.|.+|..|..+.+||+.-.......+++
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 6665555432 145677888888765 79999999999999999999999999887777899999
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
|.+.|..+..... ...|.+.+.||. .+|
T Consensus 239 h~~kV~~l~~~~~-------t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 239 HNDKVQALSYAQH-------TRQLISCGEDGGIVVW 267 (404)
T ss_pred chhhhhhhhhhhh-------heeeeeccCCCeEEEE
Confidence 9999998887766 337888899998 888
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=9.2e-08 Score=78.07 Aligned_cols=202 Identities=11% Similarity=-0.027 Sum_probs=121.2
Q ss_pred CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644 47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 126 (421)
Q Consensus 47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 126 (421)
..+||.|+.-|...+|...+.+........+...|. -+...+.+....++++ .+.++++.+++....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---------~~~r~cd~~~~~~i~s----ndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---------LVKRYCDLKFPLNIAS----NDHTGKTMVVSGDSN 150 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchh---------hhhhhcccccceeecc----CCcceeEEEEecCcc
Confidence 457899999999999999877633222222222111 0000000000011111 122445554443311
Q ss_pred eeeeeeecCCCCc--ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644 127 ARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 203 (421)
Q Consensus 127 ~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 203 (421)
.. .-|.. .+.++++++|++++++- +...|..|.++..++.+.-+ .....++.-.+..|+... ..+
T Consensus 151 ~~------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~F 218 (344)
T KOG4532|consen 151 KF------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQF 218 (344)
T ss_pred cc------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceE
Confidence 11 12322 38899999999999986 88899999998444333222 123334455788899987 899
Q ss_pred EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--EEEEecC-CeEEEEECCCCCc
Q 014644 204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDST 280 (421)
Q Consensus 204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~-~~i~i~d~~~~~~ 280 (421)
|++..||++.|||++..... ..... ..-+.|.+.+..+.|++-|. +|+.... +.+.+.|+++ ..
T Consensus 219 Av~~Qdg~~~I~DVR~~~tp----m~~~s--------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~ 285 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATP----MAEIS--------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YV 285 (344)
T ss_pred EEEecCCcEEEEEecccccc----hhhhc--------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-Cc
Confidence 99999999999999985432 11111 01133689999999998654 4444544 8999999997 55
Q ss_pred ceeEEe
Q 014644 281 PVATFK 286 (421)
Q Consensus 281 ~~~~~~ 286 (421)
-.+.+.
T Consensus 286 ~~q~I~ 291 (344)
T KOG4532|consen 286 NHQVIV 291 (344)
T ss_pred eeeEEe
Confidence 444443
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=5.5e-07 Score=92.30 Aligned_cols=240 Identities=10% Similarity=0.067 Sum_probs=129.4
Q ss_pred cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCC---CCCCcc-------CCCeeEEEEecCCCCeEEEE
Q 014644 139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---SNMDDL-------TEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~---~~~~~~-------~~~v~~~~~~p~~~~~l~s~ 206 (421)
.....+++.+++..|+.+ ..+.|+++|.. ++ .+.++.... ....+. -.....++++|++..++++.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~-~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFV-NE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecC-CC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 345788999888876665 56789999987 33 333331100 000110 12346899999542667777
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccC--CCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcce
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPV 282 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~ 282 (421)
+.++.|++||..++... .+.+..... .........-.....++++|+|+.|+.+ .. +.|++||+.+ +...
T Consensus 702 ~~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~ 775 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR 775 (1057)
T ss_pred CCCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence 78899999998776421 111100000 0000000011346789999999866554 44 8999999975 3321
Q ss_pred eEEeeccCcc-cccccccCC------CcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceee
Q 014644 283 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 355 (421)
Q Consensus 283 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (421)
.+.+..... ..+...... .......+++++++|..+++-+.++.|++||..++ . ...+.+...
T Consensus 776 -~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~------- 845 (1057)
T PLN02919 776 -LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-R-VTTLAGTGK------- 845 (1057)
T ss_pred -EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-e-EEEEeccCC-------
Confidence 111100000 000000000 00011258899999998888889999999998865 2 122221100
Q ss_pred ecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644 356 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 421 (421)
Q Consensus 356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~ 421 (421)
.|..||. . ..+.-.....++++++|+++++.+ ++.|++|+.
T Consensus 846 ---------------~G~~dG~-------~---~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 846 ---------------AGFKDGK-------A---LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred ---------------cCCCCCc-------c---cccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 0000110 0 001123566889999998777666 566888863
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.6e-07 Score=84.16 Aligned_cols=284 Identities=12% Similarity=0.144 Sum_probs=157.2
Q ss_pred CCCCceeeeccccccC----CCccccccccccccEEEEEEEEcCCCCeEEEEeCC-----------CcEEEeecCCceeE
Q 014644 6 TSHPEYRYKTEFQSHE----PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVK 70 (421)
Q Consensus 6 ~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d-----------~~v~lwd~~~~~~~ 70 (421)
.|+|-|.+--.-++.. +.|+-++.+.|.+ |.-+.| +|..++|+|=|.. ..++|||+.+|.++
T Consensus 219 SP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk 295 (698)
T KOG2314|consen 219 SPKGTYLVTFHKQGIALWGGESFDRIQRFYHPG-VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK 295 (698)
T ss_pred cCCceEEEEEeccceeeecCccHHHHHhccCCC-ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence 3556666544444442 4677777788865 678899 7999999987632 57999999999843
Q ss_pred E-eeecCCCCCccc-ccccccccceeeccCCCCce------eeee-----------ccccccc-ceeEEeeccccee---
Q 014644 71 K-IKEMDHFPFVSS-ENTLLAEKNFMNEHNPPSFA------HGYH-----------LEWTENM-ATKIANVGNSVHA--- 127 (421)
Q Consensus 71 ~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~------~~~~-----------g~~~~~~-~~~~~~~~~~~~~--- 127 (421)
+ +...+.+-.++. +.|+..++.+-+...+.-.. .+.. -++...+ .+..|..++....
T Consensus 296 rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 296 RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARV 375 (698)
T ss_pred cceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceE
Confidence 3 333233333332 23444333332222211100 0011 1111111 4555654443211
Q ss_pred --------eeeeeecCCCCcceEEEeecCCCCEEEEE-c----C------CcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644 128 --------RCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRINLWNLEISDQCFNIVDMKPSNMDDLTE 188 (421)
Q Consensus 128 --------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 188 (421)
+.+++- +-|.-.=-.|.|-.+|.+|+.- + . ..+.|+.++...-.+..+ .-..
T Consensus 376 tL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--------elke 446 (698)
T KOG2314|consen 376 TLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKE 446 (698)
T ss_pred EEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--------ecch
Confidence 111111 1111111234566788888863 2 1 135566666333344433 2347
Q ss_pred CeeEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 189 VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
.|...+|-|.| ..++.-+ ...++.+|-+.+......+++.++. ...+.+.|+|.|++++.+
T Consensus 447 ~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---------------~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 447 SVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---------------KFANTVFWSPKGRFVVVA 510 (698)
T ss_pred heeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---------------cccceEEEcCCCcEEEEE
Confidence 78999999999 5555443 2357889988753222222233322 357889999999999865
Q ss_pred ---cC-CeEEEEECCCCCcce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------CCeEEEEecC
Q 014644 266 ---DY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 334 (421)
Q Consensus 266 ---~~-~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------dg~i~iwd~~ 334 (421)
+. |.+.++|+.. .... .....|... +.+-|.|.|+|+++++. |.--+||+++
T Consensus 511 ~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecccccceEEEecch-hhhhhccCcccccc----------------ccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 34 8999999863 1211 111122221 57899999999999886 3445666655
No 270
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.4e-07 Score=87.09 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--c--CCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+.++++.++ +..+.. ...+......|+|||+.|+.. . +..|.++|+. ++...++ ..+....
T Consensus 214 ~Iyv~dl~tg---~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~L--------T~~~~~d 279 (419)
T PRK04043 214 TLYKYNLYTG---KKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQI--------TNYPGID 279 (419)
T ss_pred EEEEEECCCC---cEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEEc--------ccCCCcc
Confidence 4445555444 333332 234455677899999887753 3 3567777876 4443332 2222233
Q ss_pred eEEEEecCCCCeEEEEE-cCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 191 TSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~-~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
....|+||| +.|+..+ ..+ .|.+.|+..++.. ++... +. ....|+|||++|+....
T Consensus 280 ~~p~~SPDG-~~I~F~Sdr~g~~~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 280 VNGNFVEDD-KRIVFVSDRLGYPNIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred CccEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEc
Confidence 456899999 6666655 333 5777787765432 11111 01 12489999999875421
Q ss_pred ----------CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-C--eEEEEecC
Q 014644 268 ----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHG 334 (421)
Q Consensus 268 ----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g--~i~iwd~~ 334 (421)
..|.+.|+.. +.. ..+...... ....|+|||+.|+..+.+ + .+.+.++.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~-g~~-~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNS-DYI-RRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcccCCCCcEEEEEECCC-CCe-EECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 2577778764 433 333322111 357899999988766543 2 35566665
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=2.7e-09 Score=98.42 Aligned_cols=242 Identities=13% Similarity=0.146 Sum_probs=149.4
Q ss_pred eEEEeecCC--CCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 141 INSISNNSD--CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 141 v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
|-...|+|. -.+-+.+ ....-.+|++.... +.+.. .+.+|+..|+.+-|+|+.+..+++++.|-.+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeee
Confidence 334455543 2233333 55556688876322 23332 24789999999999999989999999999999999
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 295 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 295 (421)
+++.... ...+.. -......++|+.....+.+.+. ..|++||++..+.++..+++|...+
T Consensus 144 ~rSp~~p---~ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--- 204 (1081)
T KOG0309|consen 144 MRSPHRP---FYSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--- 204 (1081)
T ss_pred ccCCCcc---eeeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence 9986532 222221 1346678999975444444444 8899999998888999998876544
Q ss_pred ccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc----cccceee
Q 014644 296 CDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR----SSLSNLT 370 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ 370 (421)
.++.|..- ...+.+.+.||+|+.||................++..-.+.|-..|.. .++..+-
T Consensus 205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP 272 (1081)
T ss_pred ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeee
Confidence 45555432 335778999999999998876444444444455555555555422220 0001111
Q ss_pred eecccCc-ccC---CCCCccccccccccCeEEEEEccCCC----------eEEEec-CCceEEE
Q 014644 371 RGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH 419 (421)
Q Consensus 371 ~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~~----------~la~~~-~~~~~i~ 419 (421)
.-..+.. ..| +....+....||...|...-|-..+. .|++=+ +-.+++|
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 1112222 445 33345556678888777766654433 355555 4457777
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=3.4e-09 Score=106.62 Aligned_cols=193 Identities=12% Similarity=0.166 Sum_probs=128.2
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.|.++.- +|...+.+||+.||.|++|....+..........+.. +..+.++..+.....+ +.++
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~------------vtr~~f~~qGnk~~i~--d~dg 2273 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR------------VTRSRFNHQGNKFGIV--DGDG 2273 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch------------hhhhhhcccCCceeee--ccCC
Confidence 4444444 6778899999999999999988776222211112232 2222222222111111 2355
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 190 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v 190 (421)
.+.+|.... ++.... +.|.....+..|-. ..++++ +++.+.+||........-+ -..|.+.+
T Consensus 2274 ~l~l~q~~p----k~~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~ga 2339 (2439)
T KOG1064|consen 2274 DLSLWQASP----KPYTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGGA 2339 (2439)
T ss_pred ceeecccCC----cceecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCCc
Confidence 678887762 555555 78998899998874 666662 5889999997633322211 15688999
Q ss_pred eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644 191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 269 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~ 269 (421)
+++++-|.. ++|++|+.+|.|++||++..++. +.|.. +. ...++++|+. |.
T Consensus 2340 T~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2340 TVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred eEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-hhheeeccCcccc
Confidence 999999998 99999999999999999986543 32221 33 4668888876 99
Q ss_pred EEEEECCCCCcceeEEe
Q 014644 270 LKLWDIRMDSTPVATFK 286 (421)
Q Consensus 270 i~i~d~~~~~~~~~~~~ 286 (421)
++||++.. -..+..+.
T Consensus 2392 ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred eEEEEccc-cchhhcCc
Confidence 99999975 44454443
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=1.1e-06 Score=77.56 Aligned_cols=149 Identities=20% Similarity=0.296 Sum_probs=102.8
Q ss_pred cccccccccccEEEEEEEEcCCCCeEEEEeCCC-cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644 25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 103 (421)
Q Consensus 25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~-~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 103 (421)
.+...++|...|.-..+ ..+++-++.|..|| .+-|+|..+++.+++
T Consensus 351 ~~~iqv~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------------------------------- 397 (668)
T COG4946 351 GYSIQVGKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------------------------------- 397 (668)
T ss_pred CeeEEcCCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEe-------------------------------
Confidence 34445666666666666 34455666777776 677777666553333
Q ss_pred eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644 104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 182 (421)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 182 (421)
...-+.|.++..+++|++++.+ +...|.+.|++ ++. ++.++
T Consensus 398 -------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngn-v~~id----- 439 (668)
T COG4946 398 -------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGN-VRLID----- 439 (668)
T ss_pred -------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCC-eeEec-----
Confidence 3445679999999999999999 88889899998 333 33332
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCC----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (421)
....+-|+.+.|+|++ ..+|.+--+| .|+++|+..++.. ..... ...-.+-+|.||
T Consensus 440 -kS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d 499 (668)
T COG4946 440 -KSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPD 499 (668)
T ss_pred -ccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCC
Confidence 3455779999999999 9998876554 6899999987543 11111 234456789999
Q ss_pred CCEEEE
Q 014644 259 GQHLLS 264 (421)
Q Consensus 259 ~~~l~~ 264 (421)
+++|.-
T Consensus 500 ~ryLYf 505 (668)
T COG4946 500 GRYLYF 505 (668)
T ss_pred CcEEEE
Confidence 998763
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.02 E-value=7.3e-07 Score=89.77 Aligned_cols=312 Identities=12% Similarity=0.066 Sum_probs=164.3
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee-eeecccc
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-GYHLEWT 111 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 111 (421)
...|.+++| +||+.+|+....+++|.+-.-+-..+... ..... ..+......+.+.+..+. --.++..
T Consensus 120 d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~---~l~~~------~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 120 DSGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEV---PLDSD------DFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEe---ecCcc------ccCCCceeeeccCcccCccCcchhhh
Confidence 568999999 79999999999999999876332111111 11110 001122333333322221 1111110
Q ss_pred cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----C--CcEEEEeCCCCceeeeeeecCCCCCC
Q 014644 112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D--LRINLWNLEISDQCFNIVDMKPSNMD 184 (421)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----d--~~i~lwd~~~~~~~~~~~~~~~~~~~ 184 (421)
.-. .+-+.... ......+ . +...-..++|-.||+++|++ - . +.+|||+-+ +.+..+- +
T Consensus 189 aa~--~~~~p~~~--~~d~~~~-s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stS-------E 253 (928)
T PF04762_consen 189 AAR--QLRDPTVP--KVDEGKL-S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTS-------E 253 (928)
T ss_pred hhh--hccCCCCC--ccccCcc-c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecc-------c
Confidence 000 00000000 0001112 2 44455689999999999985 3 2 579999976 5444332 2
Q ss_pred ccCCCeeEEEEecCCCCeEEEEEc---CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 185 DLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 185 ~~~~~v~~~~~~p~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
.-.+--.+++|.|.| ++||+.-. ...|.+|.-+ |-.. ..|.. . +......|..+.|++|+..
T Consensus 254 ~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErN-GLrh----geF~l-~--------~~~~~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 254 PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERN-GLRH----GEFTL-R--------FDPEEEKVIELAWNSDSEI 318 (928)
T ss_pred cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecC-CcEe----eeEec-C--------CCCCCceeeEEEECCCCCE
Confidence 222333568999999 99988764 3456666633 3211 11211 0 0112467899999999999
Q ss_pred EEEecCCeEEEEECCCCCccee--EEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCC
Q 014644 262 LLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSA 338 (421)
Q Consensus 262 l~~~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~ 338 (421)
||......|.+|-..+ -.... .+....... +..+.|+|. ...|...+.+|.+..+++.-.
T Consensus 319 LAv~~~~~vqLWt~~N-YHWYLKqei~~~~~~~--------------~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-- 381 (928)
T PF04762_consen 319 LAVWLEDRVQLWTRSN-YHWYLKQEIRFSSSES--------------VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-- 381 (928)
T ss_pred EEEEecCCceEEEeeC-CEEEEEEEEEccCCCC--------------CCceEECCCCCCEEEEEecCCcEEEEEEEEE--
Confidence 9987655699999865 33221 122111110 034899994 556777777787766654421
Q ss_pred ceeEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC--C---CCCcc-ccccccccCeEEEEEccCCCeEEE
Q 014644 339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--S---SSGHH-ELSYNLSSKLLHLAWHPTTNLIAC 410 (421)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~---~~~~~-~~~~~~~~~v~~~~~spd~~~la~ 410 (421)
...-.+..... .-..+--||. ++- . ...++ ...+.....|.+++|++++..+|+
T Consensus 382 -v~~s~~~~~~D-----------------~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 382 -VSRSPGSSPND-----------------NGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred -EEecCCCCccC-----------------ceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 00000000000 1112222232 111 1 11111 123356788999999999987666
Q ss_pred ec-CCceEEEe
Q 014644 411 AN-GNSLFFHY 420 (421)
Q Consensus 411 ~~-~~~~~i~~ 420 (421)
-. ++.+.+|.
T Consensus 444 l~~d~~l~~~~ 454 (928)
T PF04762_consen 444 LTSDGSLSIYE 454 (928)
T ss_pred EECCCCEEEEE
Confidence 65 55588875
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=3e-09 Score=106.99 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=139.6
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
..+-..|.++.-+|...+.++| .||.|++|... .++.+.+.+ ......|+.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~-~~~~v~~~r------t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWG-HGQQVVCFR------TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEecc-CCCeEEEee------ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence 4566778888889999999999 99999999998 555555442 2233889999999999 8898899999999
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCCCCcceeEEeecc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
+|.+.... ...+ ..|+.....+.|-. ..++++ ++ +.+.+||.......-..-..|.
T Consensus 2277 l~q~~pk~-----~~s~-------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTSW-------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred ecccCCcc-----eecc-------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 99987321 1223 33466777888874 566653 35 8999999864333222236677
Q ss_pred CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccccee
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL 369 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (421)
+.. +.+++.|..+.|++|+.+|.|++||++.. ++...++. +. . ..++
T Consensus 2337 ~ga---------------T~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~-------~~-~---------~~~f 2383 (2439)
T KOG1064|consen 2337 GGA---------------TVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA-------LD-T---------REYF 2383 (2439)
T ss_pred CCc---------------eEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-------hh-h---------hhee
Confidence 654 78999999999999999999999999875 44444443 11 1 2389
Q ss_pred eeecccCc-ccCCCCC
Q 014644 370 TRGLYRQA-HENSSSG 384 (421)
Q Consensus 370 ~~g~~d~~-~iw~~~~ 384 (421)
.+|+..|. +||+..+
T Consensus 2384 ~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred eccCcccceEEEEccc
Confidence 99999999 9995443
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=4.7e-07 Score=79.83 Aligned_cols=163 Identities=11% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC-eEEEEECCcccccccch
Q 014644 149 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSA 227 (421)
Q Consensus 149 ~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~ 227 (421)
+|.+++.-..|...+.+.. .+-.++ -++...|.-..+.-+. .-++.|..|| .+-++|.+.+...
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~-~~~~iq---------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---- 395 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPW-DGYSIQ---------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---- 395 (668)
T ss_pred CCcEEEEEecCcEEEECCC-CCeeEE---------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE----
Confidence 6888888777888888876 343343 3466778888888887 6888899998 8999999987632
Q ss_pred hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCccee
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 306 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.... -+.|.++..+|+|++++.+.+ ..|.+.|+.+ +.+...-+.....+
T Consensus 396 r~e~~--------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lI-------------- 446 (668)
T COG4946 396 RIEKD--------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLI-------------- 446 (668)
T ss_pred EeeCC--------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccccccee--------------
Confidence 22122 467999999999999999988 8999999987 66544333344433
Q ss_pred eeEEEEcCCCCEEEEeeCCC----eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 307 KFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 307 ~~~~~~sp~~~~l~~~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
+.+.|+|+++++|.+--+| .|+++|+..+. ........+...+.+|.|+
T Consensus 447 -tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 447 -TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred -EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecCCcccccCcccCCC
Confidence 7999999999999876555 69999998752 2222223333344455444
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=5.2e-06 Score=73.68 Aligned_cols=258 Identities=11% Similarity=0.054 Sum_probs=136.8
Q ss_pred cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecCCC-
Q 014644 114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPS- 181 (421)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~~~- 181 (421)
+.+.+.|..+. +.+.++..+.... .+ ++||++.|+.+ . +..|.+||.. +.+....+.+.+.
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcEEeEEccCCCc
Confidence 56777887776 6666663333332 24 89999998876 5 6899999999 5555554432211
Q ss_pred CCCccCCCeeEEEEecCCCCeEEEEE-c-CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 182 NMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 182 ~~~~~~~~v~~~~~~p~~~~~l~s~~-~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
.+. .......++++||| ++|+... . +..|.+.|+.+++.. ..+.. .....-...+ +.
T Consensus 100 ~~~-~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv----~ei~v--------------p~~~~vy~t~-e~ 158 (352)
T TIGR02658 100 RFL-VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFV----RMMDV--------------PDCYHIFPTA-ND 158 (352)
T ss_pred hhh-ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEE----EEEeC--------------CCCcEEEEec-CC
Confidence 000 12334578899999 8777665 4 789999999997654 22221 1111111111 12
Q ss_pred CEEEEecCCeEEEEECCCCCccee----EEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecC
Q 014644 260 QHLLSRDYMNLKLWDIRMDSTPVA----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 260 ~~l~~~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~ 334 (421)
.+++.+.||......+...++... .+.... +.++ ..-.|.+ +|+++....+ |.|++.|+.
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~------------~~v~--~rP~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED------------EYLI--NHPAYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCc------------cccc--cCCceEcCCCcEEEEecC-CeEEEEecC
Confidence 222222233333322222222110 011111 1111 1124455 8888776666 999999975
Q ss_pred CCCCc----eeEEec-------CCCCccceeeecCCcccccccceeee-e--c-----ccCc-ccC---CCCCccccccc
Q 014644 335 VGSAG----GITVEA-------GKNENRKPILQAAPRARRSSLSNLTR-G--L-----YRQA-HEN---SSSGHHELSYN 391 (421)
Q Consensus 335 ~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~-g--~-----~d~~-~iw---~~~~~~~~~~~ 391 (421)
..... ...+.. ..+....++++++ ++ .+.. . . .++. .+| .........+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g~-----~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--RD-----RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCC--CC-----EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 43211 111111 1122234667766 33 3333 2 1 2333 566 22223333334
Q ss_pred cccCeEEEEEccCCC-eEEEec--CCceEEEeC
Q 014644 392 LSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA 421 (421)
Q Consensus 392 ~~~~v~~~~~spd~~-~la~~~--~~~~~i~~~ 421 (421)
....+..++++||++ .|.+.+ ++.+.++++
T Consensus 297 vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 297 LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 566889999999999 777666 456888764
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=4.2e-07 Score=83.87 Aligned_cols=170 Identities=14% Similarity=0.049 Sum_probs=103.1
Q ss_pred ceEEEeecCCCCE-EEE-E-c--CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC--CeE
Q 014644 140 NINSISNNSDCET-FVS-A-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFV 212 (421)
Q Consensus 140 ~v~~l~~~~~~~~-l~s-~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--~~v 212 (421)
......|+|||+. ++. . . +..|.++|+. +++...+. ...+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt--------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIA--------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEe--------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6778999999984 553 4 3 4568888987 44433332 2334556778999993344444434 467
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeec
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~ 288 (421)
.++|+..+... ++... ........|+|||+.|+..++ ..|++.|+.. ++..+ +...
T Consensus 260 y~~dl~~g~~~----~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r-lt~~ 319 (419)
T PRK04043 260 YLYDTNTKTLT----QITNY--------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQ-VVFH 319 (419)
T ss_pred EEEECCCCcEE----EcccC--------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEe-CccC
Confidence 77788765422 21111 222345679999998876543 3677888864 44322 2111
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---------CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---------NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
.. ....|+|||++|+..+.. ..|++.|+.++.. ..+... .......|+|+
T Consensus 320 g~-----------------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 320 GK-----------------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSD 378 (419)
T ss_pred CC-----------------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCC
Confidence 11 124899999998866643 3688888877632 333332 23446788888
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.1e-08 Score=94.57 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=166.3
Q ss_pred CCccccccccccc--cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644 22 PEFDYLKSLEIEE--KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 99 (421)
Q Consensus 22 ~~~~~~~~~~h~~--~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (421)
..|..-+-+.|.. .|..+.|++++.-.+-++..+...-.+|++....-
T Consensus 54 ~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~------------------------------ 103 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS------------------------------ 103 (1081)
T ss_pred CCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc------------------------------
Confidence 3444444455543 57888998877777777777777778888765321
Q ss_pred CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644 100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD 177 (421)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~ 177 (421)
..+..++.+|...|+.+.|+|+.. .++++ .|..+..||++.....+...
T Consensus 104 ----------------------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~- 154 (1081)
T KOG0309|consen 104 ----------------------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST- 154 (1081)
T ss_pred ----------------------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-
Confidence 122223379999999999999654 66777 89999999999666555443
Q ss_pred cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644 178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 257 (421)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~ 257 (421)
..-......++|+-..++.+| .+....|++||++.+... ...+ ++|...++.++|..
T Consensus 155 ------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---l~s~-------------K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 155 ------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---LCSL-------------KGHVSSVNSIDFNR 211 (1081)
T ss_pred ------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---eEEe-------------cccceeeehHHHhh
Confidence 222344578899987745554 456678999999987533 1222 23467788888875
Q ss_pred C-CCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEE---------eeC
Q 014644 258 D-GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFAT---------GSY 324 (421)
Q Consensus 258 ~-~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~---------~s~ 324 (421)
- ...+.+. .+++|+.||.....+.-........++ +...+-|= |.++.- ---
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRC 276 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccc
Confidence 3 2234444 559999999975322222111112211 34444442 222221 111
Q ss_pred CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc---cccccceeeeecccCc-ccCCCCCcc
Q 014644 325 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA---RRSSLSNLTRGLYRQA-HENSSSGHH 386 (421)
Q Consensus 325 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~g~~d~~-~iw~~~~~~ 386 (421)
+.....|+..++...+..+.||.+.|....|...+.. ...-.-.|++-+.|.. ++|..+..+
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred cchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 3334456666666778999999999987777543220 0011457999999999 999554433
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=2e-08 Score=86.35 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=99.3
Q ss_pred cCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec-ccccccceeEEe
Q 014644 44 APNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIAN 120 (421)
Q Consensus 44 ~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 120 (421)
+++++++|.+..++...+.++.... .+.......+. +-.++.+....+...-+ .......+.+|.
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~------------~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK------------RPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc------------CcceeeeeeccceEEEEeecCCceeeeeec
Confidence 5678889988888887777765443 22222111111 11111111111111111 111122455665
Q ss_pred ecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC
Q 014644 121 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 199 (421)
Q Consensus 121 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 199 (421)
...+ .+... -||-..+..++|+||+++|+++ .|..|++-... ....+..+ .-||+.-|..++.-++
T Consensus 139 ~~~~---~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~- 205 (390)
T KOG3914|consen 139 ADSG---RCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN- 205 (390)
T ss_pred cccc---Ccchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC-
Confidence 5542 45444 4999999999999999999999 99999998776 22222221 3689999999999887
Q ss_pred CCeEEEEEcCCeEEEEECCccccc
Q 014644 200 CNLLAYSSSRGFVRLVDMRQSALC 223 (421)
Q Consensus 200 ~~~l~s~~~d~~v~iwd~~~~~~~ 223 (421)
..|++++.|++|++||+.+++..
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCcc
Confidence 56999999999999999998765
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.90 E-value=2.3e-06 Score=76.24 Aligned_cols=235 Identities=9% Similarity=0.145 Sum_probs=134.5
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCC---------------cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644 35 KINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 99 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~---------------~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (421)
.|.-+.| +|++.+|.+-+... .+.+||+.++.+...........+- |
T Consensus 73 ~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~---W------------- 134 (561)
T COG5354 73 DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG---W------------- 134 (561)
T ss_pred Cceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc---c-------------
Confidence 4677888 78899999876544 4999999988743332211111000 0
Q ss_pred CCceeeeeccc---ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEE-----E-cCCcEEEEeCCC
Q 014644 100 PSFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVS-----A-DDLRINLWNLEI 168 (421)
Q Consensus 100 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s-----~-~d~~i~lwd~~~ 168 (421)
+-.+|..+-.. -.+..+.+.++.......+.+.+ -...|....|+|. +..|+. . .++++++|.+..
T Consensus 135 p~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 135 PVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred ceeeeeecchhhhhhccCeEEEEecCCccccCchhhc---cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 00111111111 01123445543222111222233 1356888899985 344554 3 688999999973
Q ss_pred CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-----------cCCeEEEEECCcccccccchhhhccccccC
Q 014644 169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----------SRGFVRLVDMRQSALCDHSARILRDAAESH 237 (421)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~ 237 (421)
+. .+.+. ++ ....-..+.|++.| .+|+.-- ....+.++++...... .-
T Consensus 212 ~s-~l~tk-----~l--fk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-----V~------- 270 (561)
T COG5354 212 NS-VLVTK-----NL--FKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-----VE------- 270 (561)
T ss_pred CC-eeeee-----ee--EeecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeecccccc-----ee-------
Confidence 33 33221 11 12223467888888 5554321 1245777777743321 11
Q ss_pred CCcccccccccceeEEEEcCCCCEEEEec--C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644 238 GSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 314 (421)
Q Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 314 (421)
....++|...+|.|.++.+++.+ . -.+.++|++. .....+ .+... ..+.|+|
T Consensus 271 ------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~--Pe~~r---------------NT~~fsp 325 (561)
T COG5354 271 ------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYF--PEQKR---------------NTIFFSP 325 (561)
T ss_pred ------ccccccceeeeecccCCceeEEecccccceeeccccc--ceEEec--CCccc---------------ccccccC
Confidence 01267999999999988877643 3 7899999974 443333 33322 4689999
Q ss_pred CCCEEEEeeCC---CeEEEEecCCC
Q 014644 315 DGLHFATGSYS---NLLRIFSHGVG 336 (421)
Q Consensus 315 ~~~~l~~~s~d---g~i~iwd~~~~ 336 (421)
.+++++.++.| |.|-+||....
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccEEEEecCCccccceEEeccCCc
Confidence 99999987764 67999997644
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=2.7e-06 Score=75.86 Aligned_cols=233 Identities=10% Similarity=0.049 Sum_probs=135.5
Q ss_pred ceEEEeecCCCCEEEEE-c---------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-EEEEecCCCCe
Q 014644 140 NINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNL 202 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~---------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~ 202 (421)
.|..+.|+|.+++|.+= . +..+.+||+. ++.++..+... ....-.+ -+.|+-+. ++
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf~~~-----~q~~~~Wp~~k~s~~D-~y 145 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSFNGI-----SQPYLGWPVLKFSIDD-KY 145 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeecccc-----CCcccccceeeeeecc-hh
Confidence 36666777777777762 2 2369999999 67777654211 1111134 56788887 66
Q ss_pred EEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEE-----ecC-CeEEEEE
Q 014644 203 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-----RDY-MNLKLWD 274 (421)
Q Consensus 203 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~-~~i~i~d 274 (421)
+|-. ....+.|+++ ++.......+.+. ...+....|+|.+ ..|+. ... +++++|.
T Consensus 146 ~ARv-v~~sl~i~e~-t~n~~~~p~~~lr---------------~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 146 VARV-VGSSLYIHEI-TDNIEEHPFKNLR---------------PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred hhhh-ccCeEEEEec-CCccccCchhhcc---------------ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 6554 3456899997 4332221122222 2468888999963 34442 233 8899999
Q ss_pred CCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-----------CCCeEEEEecCCCCCceeEE
Q 014644 275 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----------YSNLLRIFSHGVGSAGGITV 343 (421)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-----------~dg~i~iwd~~~~~~~~~~~ 343 (421)
+.. +.++..-..-.... ..+.|.+.|++|+.-. ....++|+++... -....
T Consensus 209 Ip~-~s~l~tk~lfk~~~---------------~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~ 270 (561)
T COG5354 209 IPK-NSVLVTKNLFKVSG---------------VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVE 270 (561)
T ss_pred ccC-CCeeeeeeeEeecc---------------cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--cccee
Confidence 974 55443322111110 4789999999876321 1356889998833 33333
Q ss_pred ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec----CCceEE
Q 014644 344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN----GNSLFF 418 (421)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~----~~~~~i 418 (421)
..-.++|-...|.|...+ -.+++|..... .+++..+.+. .......=..+.|+|.+++++.++ .+++-+
T Consensus 271 ~~~~~pVhdf~W~p~S~~-----F~vi~g~~pa~~s~~~lr~Nl~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSR-----FAVISGYMPASVSVFDLRGNLR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred ccccccceeeeecccCCc-----eeEEecccccceeecccccceE-EecCCcccccccccCcccEEEEecCCccccceEE
Confidence 366899999999888322 24566666666 5553332221 122233334567788888777766 344555
Q ss_pred Ee
Q 014644 419 HY 420 (421)
Q Consensus 419 ~~ 420 (421)
|+
T Consensus 345 ~~ 346 (561)
T COG5354 345 FD 346 (561)
T ss_pred ec
Confidence 54
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=5.1e-07 Score=73.83 Aligned_cols=172 Identities=13% Similarity=0.012 Sum_probs=114.9
Q ss_pred CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644 149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 227 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 227 (421)
...+|+.| ..|...+|...+++...++. ..|...|.-+.=.-+....+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---- 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence 44578887 99999999998655555444 2233323222111111144666788999999988765321
Q ss_pred hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE-eeccCcccccccccCCCcce
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIF 305 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (421)
+..|. . .-.+..+++++|++++++.++ ..|..|.+..+++.+... ...... .-
T Consensus 152 --~~~h~---------~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-----------~g- 206 (344)
T KOG4532|consen 152 --FAVHN---------Q--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-----------HG- 206 (344)
T ss_pred --ceeec---------c--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-----------Cc-
Confidence 22220 0 123789999999999998877 999999998766554442 222211 11
Q ss_pred eeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc----eeEEecCCCCccceeeecC
Q 014644 306 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG----GITVEAGKNENRKPILQAA 358 (421)
Q Consensus 306 ~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~ 358 (421)
++.+|+.....+|++++||++.|||++....+ ...-..|.+.++.+.|++.
T Consensus 207 --F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 207 --FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred --eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 57899999999999999999999999976433 2233457888999999975
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=3.6e-06 Score=84.88 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=152.7
Q ss_pred CCcceEEEeecCCCCEEEEE-cCCcEEEE----eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644 137 HDFNINSISNNSDCETFVSA-DDLRINLW----NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 211 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lw----d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~ 211 (421)
..+.|.++.+.++...++.+ .+|.|.+. +.. ...+.+. ..-...|.+++||||+ .+|+..+.+++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~V-------G~vd~GI~a~~WSPD~-Ella~vT~~~~ 143 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPD--EDEIEIV-------GSVDSGILAASWSPDE-ELLALVTGEGN 143 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC--CceeEEE-------EEEcCcEEEEEECCCc-CEEEEEeCCCE
Confidence 45679999999999888888 99999998 444 2333332 2334679999999999 99999998988
Q ss_pred EEEEECCccccc--------------------ccchhhhccccccC---------C----CcccccccccceeEEEEcCC
Q 014644 212 VRLVDMRQSALC--------------------DHSARILRDAAESH---------G----SKSFFTEIIASISDIKFAND 258 (421)
Q Consensus 212 v~iwd~~~~~~~--------------------~~~~~~~~~h~~~~---------~----~~~~~~~~~~~v~~~~~s~~ 258 (421)
|.+.+- +.... .+....|.+ ..+. . ....+. ....-..++|-.|
T Consensus 144 l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G-s~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD 220 (928)
T PF04762_consen 144 LLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG-SAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD 220 (928)
T ss_pred EEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCc-chhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence 876532 11110 000111111 0000 0 011122 4446678999999
Q ss_pred CCEEEEec------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeE
Q 014644 259 GQHLLSRD------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLL 328 (421)
Q Consensus 259 ~~~l~~~~------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i 328 (421)
|+|+|+.+ . +.+++|+-+ |.....-..-.+.. ..++|-|.|.+||+... ...|
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe---------------~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLE---------------GALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCcc---------------CCccCCCCCCEEEEEEEcCCCcEE
Confidence 99999642 1 579999964 55433332222211 47899999999988764 4568
Q ss_pred EEEecCCCCCceeEEe--cCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcc----ccc-cccccCeEEEEE
Q 014644 329 RIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHH----ELS-YNLSSKLLHLAW 401 (421)
Q Consensus 329 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~----~~~-~~~~~~v~~~~~ 401 (421)
.+|.-+.-......++ .....+..+.|+++ ...||....|...+|..+.-- ... ......+..+.|
T Consensus 284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d-------s~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~W 356 (928)
T PF04762_consen 284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNSD-------SEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKW 356 (928)
T ss_pred EEEecCCcEeeeEecCCCCCCceeeEEEECCC-------CCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence 8888553322233343 34567899999998 448888777777999544321 111 122234555999
Q ss_pred ccCCCe-EEEecC-CceEEE
Q 014644 402 HPTTNL-IACANG-NSLFFH 419 (421)
Q Consensus 402 spd~~~-la~~~~-~~~~i~ 419 (421)
+|..+. |.+.+. +.+..+
T Consensus 357 dpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 357 DPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred CCCCCCEEEEEecCCcEEEE
Confidence 997654 666654 555443
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.5e-06 Score=72.19 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=108.4
Q ss_pred eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-----CCeEEEEEcCCeEEE
Q 014644 141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVRL 214 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~~d~~v~i 214 (421)
=+-++||||+.+||.+ ..|+|+++|+. +..+. .+.........-..+|.++.|.+.. ...|+.-..+|.++=
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc-cceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4678999999999999 99999999998 44444 2211110112234567777776532 235677778888887
Q ss_pred EECCccccc-ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-C----------eEEEEECCCCCcc
Q 014644 215 VDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M----------NLKLWDIRMDSTP 281 (421)
Q Consensus 215 wd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~----------~i~i~d~~~~~~~ 281 (421)
|-+..+... .+..+.+.. ...+...|.++.++|..++|+.|+ . . -+..|.+-. +.+
T Consensus 124 y~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-CCC
Confidence 765432110 000111111 122356899999999988887652 1 1 356676643 333
Q ss_pred eeEE-eeccCccc---------cccc-------ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 282 VATF-KIHEHLRP---------KLCD-------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 282 ~~~~-~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.... ...+..+. ++.. ..+.+.+ ..|+.||||+.||+.+.+|.|.+|++..-
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 2221 11101000 0000 1234444 69999999999999999999999999875
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=7.3e-06 Score=68.15 Aligned_cols=229 Identities=16% Similarity=0.155 Sum_probs=122.8
Q ss_pred EeecCCCCEEEEEcCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccc
Q 014644 144 ISNNSDCETFVSADDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 222 (421)
Q Consensus 144 l~~~~~~~~l~s~~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~ 222 (421)
++.+.+|+.||.-.|..|.|=..+.+-. .+....+ .+.-...=+-++|+||+ .+||.+...|+|+++|+....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV----pkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQV----PKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEec----CCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee
Confidence 5667899998888888888876652211 1111111 11222334679999999 9999999999999999886432
Q ss_pred cccchhhhccccccCCCcccccccccceeEEEEcCCC-------CEEEEecCCeEEEEECCC----CCcceeEEeeccCc
Q 014644 223 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSRDYMNLKLWDIRM----DSTPVATFKIHEHL 291 (421)
Q Consensus 223 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~~i~i~d~~~----~~~~~~~~~~~~~~ 291 (421)
. .+.. .. .........|.++.|.+.. ++|+..-.|.++=|-+.. .-+....+.....
T Consensus 78 f-----~I~p-----~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~- 145 (282)
T PF15492_consen 78 F-----VIPP-----AM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH- 145 (282)
T ss_pred E-----EcCc-----cc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-
Confidence 1 1111 00 0111224567777776532 344444336666555421 1122222222111
Q ss_pred ccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC----------eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN----------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (421)
...+|.++.++|..++|+.|+. .. -+.-|.+-++..-........+.+.... .
T Consensus 146 -----------yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~---~-- 209 (282)
T PF15492_consen 146 -----------YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS---K-- 209 (282)
T ss_pred -----------CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc---c--
Confidence 1113478999999888776653 21 2455665554222222111111111000 0
Q ss_pred ccccccceeeeecccCcccCCCCC--ccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 361 ARRSSLSNLTRGLYRQAHENSSSG--HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 361 ~~~~~~~~l~~g~~d~~~iw~~~~--~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.. .+|.... ...........|..|+.||||..||+.. ++.|.+|.
T Consensus 210 -------------~~--~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 210 -------------RR--GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred -------------cc--ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 00 1111000 0011112356789999999999999998 78899996
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.8e-08 Score=90.19 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=122.9
Q ss_pred eeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644 130 QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 208 (421)
Q Consensus 130 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 208 (421)
+..+ .||.+.|+.++--.+.+-++++ .|.+|++|.++..+....+-. -+.+...|+.+|.++.|-.+. +.++ +.
T Consensus 728 L~nf-~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-CQfTY~aHkk~i~~igfL~~l-r~i~--Sc 802 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-CQFTYQAHKKPIHDIGFLADL-RSIA--SC 802 (1034)
T ss_pred eecc-cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-eeeEhhhccCcccceeeeecc-ceee--ec
Confidence 3455 7999999999877777777887 999999999985544332110 012457899999999999987 7776 55
Q ss_pred CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEe-cC-CeEEEEECCCCCcceeE
Q 014644 209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DY-MNLKLWDIRMDSTPVAT 284 (421)
Q Consensus 209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~-~~-~~i~i~d~~~~~~~~~~ 284 (421)
||-|.+||.--++... +.... + ..+.+..+..-|+ ...+.++ +. .+++++|.+. .+.+..
T Consensus 803 D~giHlWDPFigr~La---q~~da----p--------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E 866 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLA---QMEDA----P--------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCE 866 (1034)
T ss_pred cCcceeecccccchhH---hhhcC----c--------ccCCCceeEecccCcchheeeeccchhhheeeeccc-ccceee
Confidence 8999999987766542 11111 0 0234444444453 4444444 44 8999999986 777777
Q ss_pred EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
++....+.+. . -+.+++..|.|++++++-.+|.|.+.|.+++
T Consensus 867 ~kVcna~~Pn--------a--~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 867 LKVCNAPGPN--------A--LTRAIAVADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred EEeccCCCCc--------h--heeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence 7655332210 0 1268899999999999999999999999988
No 288
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.81 E-value=2.8e-05 Score=69.17 Aligned_cols=252 Identities=11% Similarity=0.063 Sum_probs=133.5
Q ss_pred cCCCCeEEEEeC----------CCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 44 APNGSMFILSTN----------DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 44 ~~~~~~l~t~s~----------d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
+||++.|.++.. +..|.+||..+.+. ..+... ...... . -.......++++++++.-..+..
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~~----~--~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGPRFL----V--GTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCchhh----c--cCccceEEECCCCCEEEEecCCC
Confidence 788887776655 78999999999873 333321 110000 0 00111344556666666555554
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT- 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~- 191 (421)
...+.+.|++.. +.+..+ .- .+...-.. .++..+.+-+.||......+...++.. .... ..+..-..++.
T Consensus 127 ~~~V~VvD~~~~---kvv~ei-~v-p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~--~vf~~~~~~v~~ 197 (352)
T TIGR02658 127 SPAVGVVDLEGK---AFVRMM-DV-PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPT--EVFHPEDEYLIN 197 (352)
T ss_pred CCEEEEEECCCC---cEEEEE-eC-CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-Eeee--eeecCCcccccc
Confidence 567788888776 555444 11 11111111 222223333344444443333222211 1000 00011000000
Q ss_pred EEEEec-CCCCeEEEEEcCCeEEEEECCccccccc-chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---
Q 014644 192 SAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--- 266 (421)
Q Consensus 192 ~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--- 266 (421)
.-.|.+ ++ ..+..... |+|.+.|+........ ....+.. ..... .-..+...-++++|+++.+....
T Consensus 198 rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~-----~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 198 HPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKAD-----GWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred CCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccc-----ccCCCcceeEEEcCCCCEEEEEecCC
Confidence 004566 66 66655554 9999999765432110 0111111 00000 00123344599999999887632
Q ss_pred ------C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEEEEecCCC
Q 014644 267 ------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVG 336 (421)
Q Consensus 267 ------~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~iwd~~~~ 336 (421)
+ +.|.++|..+ ++.+..+...... .+++++||++ +|++.. .++.|.+.|..++
T Consensus 270 ~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred ccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 1 5799999987 8888777654433 6899999999 777666 5788999999887
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.80 E-value=3.8e-06 Score=86.30 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=106.1
Q ss_pred eEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC--CCCCCc------cCCCeeEEEEecCCCCeEEEEEcCC
Q 014644 141 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDD------LTEVITSAEFHPIYCNLLAYSSSRG 210 (421)
Q Consensus 141 v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--~~~~~~------~~~~v~~~~~~p~~~~~l~s~~~d~ 210 (421)
...++++| ++.++++. .++.|++||.. .+.. ..+... .....+ .-.....++++|++..++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence 35789999 45555665 78999999987 3322 221100 000011 1134567999999833555666779
Q ss_pred eEEEEECCccccccc---------chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc
Q 014644 211 FVRLVDMRQSALCDH---------SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST 280 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~---------~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~ 280 (421)
.|++||+.++..... ....+.. ...... ...-.....++++++|.++++-.. +.|++||..+ +.
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~-~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGD-HDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccC-CCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 999999987542100 0000000 000000 001123468999999987777665 9999999875 44
Q ss_pred ceeEEeeccCccccccccc-CCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644 281 PVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 337 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~ 337 (421)
.. .+.+...... .... ..........++++++|+.+++-+.++.|++||+.++.
T Consensus 837 v~-tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 837 VT-TLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EE-EEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 33 3322211000 0000 00000112689999999988888899999999998863
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=4e-07 Score=76.99 Aligned_cols=247 Identities=11% Similarity=0.043 Sum_probs=169.4
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
..++.+ +||.+.|++...-|...-+.+. .|.++++|--+..++....+- ..-..+++++.+.+.. ..|+.+
T Consensus 15 ~ll~~~-eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~------~~mP~~~~~~~y~~e~-~~L~vg 86 (404)
T KOG1409|consen 15 ELLSKI-EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY------HYMPSPCSAMEYVSES-RRLYVG 86 (404)
T ss_pred hhhhhh-cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh------hhCCCCceEeeeeccc-eEEEEE
Confidence 445556 8999999999888888888887 999999997664555443321 2234678999999998 889999
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~ 286 (421)
-..|++.-+.+...-......+.+.. |...+..+-|+-..+++++.+..+-..|.....+.-+..+.
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~-------------h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~ 153 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLA-------------HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN 153 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhh-------------hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence 99999988866542111111233333 48899999999888888887654445565433243332222
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-CCceeEEecCCCCccceeeecCCcccccc
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKNENRKPILQAAPRARRSS 365 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (421)
-.... .++.+.-. +...|...|.|.+-.+... -.....+.+|.+++.+..|.+.
T Consensus 154 ~~~~~----------------t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------- 208 (404)
T KOG1409|consen 154 FETPA----------------SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------- 208 (404)
T ss_pred eeccC----------------CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-------
Confidence 11111 11122111 5566777777776665543 2457888999999999999987
Q ss_pred cceeeeecccCc-ccCCCC---CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 366 LSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 366 ~~~l~~g~~d~~-~iw~~~---~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
...|.+|..|.. .+|+.+ +......+|...|..++.-+--+.|.+++ ++.|-+|+
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 338999999999 999544 45566778888998888877777666666 77788886
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=2e-07 Score=80.43 Aligned_cols=158 Identities=9% Similarity=0.104 Sum_probs=97.2
Q ss_pred eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---cCCeEEEEE
Q 014644 141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVD 216 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~d~~v~iwd 216 (421)
+..+..++.+++||.+ .+....+++...+.+-.+.++. ..-...-+++.|..+. ..+..+. ....+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 4445667888888888 6666666766533321222110 1111223344444444 3333333 333444444
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE-EeeccCcccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPK 294 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~~~~~ 294 (421)
...+.. ..+ -+|-..+..++|+||+++|++++. ..|++-.... .-.+.. +-||...+
T Consensus 139 ~~~~~~-----~~~-------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV-- 197 (390)
T KOG3914|consen 139 ADSGRC-----EPI-------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV-- 197 (390)
T ss_pred ccccCc-----chh-------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence 443221 222 345788999999999999999975 9999988764 333333 34688776
Q ss_pred cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
..++.-++ +.|++++.|++|++||+.++..+
T Consensus 198 -------------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 198 -------------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 56666654 56899999999999999998544
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.3e-08 Score=95.98 Aligned_cols=199 Identities=14% Similarity=0.187 Sum_probs=137.6
Q ss_pred ccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644 24 FDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 102 (421)
Q Consensus 24 ~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 102 (421)
|..++++ .|...-+|++| +.+.++|+.|+..|.|+++++.+|...
T Consensus 1091 Fr~w~~frd~~~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e-------------------------------- 1136 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSME-------------------------------- 1136 (1516)
T ss_pred cccchhhhccccceeeEEe--ecCCceEEeeeccceEEEEEccCcccc--------------------------------
Confidence 3334443 46777899999 688899999999999999999987511
Q ss_pred eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCC-cEEEEeCCCCceeeeeeecC
Q 014644 103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMK 179 (421)
Q Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~-~i~lwd~~~~~~~~~~~~~~ 179 (421)
..+ .+|...|+-+.-+.||..++++ ... -..+|++....+....+
T Consensus 1137 ----------------------------~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf--- 1184 (1516)
T KOG1832|consen 1137 ----------------------------ESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF--- 1184 (1516)
T ss_pred ----------------------------ccc-cccccccccccccCCcceeeeeccccCchHHHhccccccCccccc---
Confidence 112 6899999999999999888875 333 56799998554444332
Q ss_pred CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644 180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 259 (421)
Q Consensus 180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (421)
..-.++.|+... ..-+.|.......+||+.++..+... +.. . .+....-+...|+|+.
T Consensus 1185 --------~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~-~---------~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1185 --------DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTD-T---------VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred --------cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCc-c---------hhhhhhccccccCCCc
Confidence 234678888765 44444555566889999998765321 222 0 0012233788999998
Q ss_pred CEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 260 QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 260 ~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
++++--+ .+||.+. .+.++.|..-... ..-.|+|.|..++..++ |||+++.
T Consensus 1243 ~LIlndG----vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1243 TLILNDG----VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred ceEeeCc----eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHH
Confidence 8777432 6899987 5666665443321 24579999999998887 8999986
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=7.9e-05 Score=64.15 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=102.4
Q ss_pred eEEEeec-CCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEEEcC--------C
Q 014644 141 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 210 (421)
Q Consensus 141 v~~l~~~-~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~d--------~ 210 (421)
...+++. +++.++++... .+.++|.. .++........ . .. .......+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g~l~v~~~~-~~~~~d~~-~g~~~~~~~~~--~-~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSG-GIAVVDPD-TGKVTVLADLP--D-GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEETT-CEEEEETT-TTEEEEEEEEE--T-TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEEcC-ceEEEecC-CCcEEEEeecc--C-CCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5566676 66555444444 45556887 34333332110 0 11 33567889999999 766665533 4
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCccee---EE
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVA---TF 285 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~---~~ 285 (421)
.|..++.. ++.. ..... -...+.++|+|+++.|... +. +.|..+++...+..+. .+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 56677766 3321 12222 3457899999999987755 44 8899999864333121 12
Q ss_pred -eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644 286 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 356 (421)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (421)
...... . ..-.+++..+|++.++....+.|.+++-+ + .....+.........++|.
T Consensus 177 ~~~~~~~-g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 177 IDFPGGP-G------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EE-SSSS-C------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEE
T ss_pred EEcCCCC-c------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEE
Confidence 111110 0 01479999999988887788999999977 4 5555555444466666664
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=9.8e-08 Score=80.66 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=108.9
Q ss_pred EEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc
Q 014644 153 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 232 (421)
Q Consensus 153 l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 232 (421)
+++|-+..|-+-|++++-+.. -.....|.++.|...+ +++..|..+|.|..+|++.+..- ..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs----------f~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~~~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS----------FQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NGWCA 292 (425)
T ss_pred ecccccceeEEEEeecccccc----------cccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CCcce
Confidence 334566677787887332211 1245778999999887 89999999999999999976221 11111
Q ss_pred ccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcc---eeEEeeccCcccccccccCCCcceee
Q 014644 233 AAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDK 307 (421)
Q Consensus 233 h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
| .--|.+.|+++..-. ++++|++.+. |+|++||++. -+. +..+.+|-.....
T Consensus 293 ~---------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~------------- 349 (425)
T KOG2695|consen 293 Q---------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY------------- 349 (425)
T ss_pred E---------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc-------------
Confidence 1 122467888887776 6788887776 9999999986 555 8888888764322
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
.-+-..+....++++++|...|||.++.+ .+..++..
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf 386 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPF 386 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccC-ceeeccCC
Confidence 23566677778889999999999999987 55555443
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=7e-08 Score=56.36 Aligned_cols=37 Identities=30% Similarity=0.616 Sum_probs=35.0
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEe
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 165 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd 165 (421)
++++.+ .+|.+.|++++|+|++.+|+++ .|++|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 677888 9999999999999999999999 999999997
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.3e-07 Score=77.49 Aligned_cols=228 Identities=20% Similarity=0.169 Sum_probs=145.5
Q ss_pred ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644 26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 105 (421)
Q Consensus 26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 105 (421)
|-++.-|.+.|+.+.- .-.+++.+++.||.++.|.-..-+..
T Consensus 2 yeksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGv----------------------------------- 43 (558)
T KOG0882|consen 2 YEKSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGV----------------------------------- 43 (558)
T ss_pred cchhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccce-----------------------------------
Confidence 5678889999998865 45689999999999999975431100
Q ss_pred eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCC
Q 014644 106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM 183 (421)
Q Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~ 183 (421)
+.++.+ ..|-..|.+++.+-++.++.+. . |..++++|+. +-.....+ .+
T Consensus 44 ----------------------EfVKhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~Dminmi-----KL 94 (558)
T KOG0882|consen 44 ----------------------EFVKHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMI-----KL 94 (558)
T ss_pred ----------------------eehhhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhc-----cc
Confidence 333334 6888899999999999999995 5 9999999998 43333222 11
Q ss_pred CccCCCeeEEEEecCCCC-eEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 184 DDLTEVITSAEFHPIYCN-LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 184 ~~~~~~v~~~~~~p~~~~-~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
.--.+.+..+ .+|.... .|+.+ -.++.+.++|-....... ..+. .-|..+|..+.+.+-+.-
T Consensus 95 ~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 95 VDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred ccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence 1112222222 2232212 33333 367889999976643221 1111 234789999999999999
Q ss_pred EEEecC-CeEEEEECCCC-----CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 262 LLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 262 l~~~~~-~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
+++... |.|.-|..... ......++..... .... ..... ..++.|+|+|..+.+-+.|..|+++++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~--K~Kt~---pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFP--KAKTE---PTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchh-hccc--ccccC---ccceEEccccCcccccCcccEEEEEEecc
Confidence 988876 99999987620 1111111111110 0000 00011 16899999999999999999999999998
Q ss_pred CCCceeEE
Q 014644 336 GSAGGITV 343 (421)
Q Consensus 336 ~~~~~~~~ 343 (421)
+ ...+.+
T Consensus 233 G-klvqei 239 (558)
T KOG0882|consen 233 G-KLVQEI 239 (558)
T ss_pred c-hhhhhh
Confidence 7 444433
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=2.1e-07 Score=75.62 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=60.0
Q ss_pred cceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 139 FNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 139 ~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
..|.+++-+|..+ .+++| +||.+.+||.+....... .+..|..+++.+-|+|..+..|++++.||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 3499999999655 45557 999999999984322332 34789999999999999889999999999999999
Q ss_pred CCc
Q 014644 217 MRQ 219 (421)
Q Consensus 217 ~~~ 219 (421)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 874
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=4.5e-05 Score=70.32 Aligned_cols=308 Identities=10% Similarity=-0.020 Sum_probs=142.9
Q ss_pred CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccc
Q 014644 46 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 125 (421)
Q Consensus 46 ~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 125 (421)
.+..+++++.++.|.-+|..+++..-... ....+. .. +... ...+..+.. .+.+..+|..++
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~--~~~~~~--------~~---p~v~--~~~v~v~~~--~g~l~ald~~tG- 125 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD--LDERLS--------GG---VGAD--GGLVFVGTE--KGEVIALDAEDG- 125 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec--CCCCcc--------cc---eEEc--CCEEEEEcC--CCEEEEEECCCC-
Confidence 36788889999999999998887432221 111111 00 0000 111111111 233444555444
Q ss_pred eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644 126 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 204 (421)
Q Consensus 126 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 204 (421)
+.+... .. .+.+.+.-.. .+..++.+ .++.|..||.+++....+.. .....+. ... ..+.... + ..++
T Consensus 126 --~~~W~~-~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~-~~~-~~sp~~~--~-~~v~ 194 (377)
T TIGR03300 126 --KELWRA-KL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALT-LRG-SASPVIA--D-GGVL 194 (377)
T ss_pred --cEeeee-cc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCcee-ecC-CCCCEEE--C-CEEE
Confidence 333333 11 1222211111 23455666 89999999998444333321 1100000 000 0111111 2 3577
Q ss_pred EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCccee
Q 014644 205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 283 (421)
Q Consensus 205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~ 283 (421)
.+..++.+..+|+++++.. |......+........-........+ .+..+..++ ++.++.+|..+ ++.+.
T Consensus 195 ~~~~~g~v~ald~~tG~~~------W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t-G~~~W 265 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPL------WEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS-GRVLW 265 (377)
T ss_pred EECCCCEEEEEEccCCCEe------eeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCC-CcEEE
Confidence 7888899999999888643 21100000000000000000011111 234555444 49999999986 76655
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 363 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (421)
....... ..... .+..++.++.+|.++.+|..++...-..-.............
T Consensus 266 ~~~~~~~-----------------~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~------- 319 (377)
T TIGR03300 266 KRDASSY-----------------QGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV------- 319 (377)
T ss_pred eeccCCc-----------------cCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE-------
Confidence 4431111 12222 456788888999999999988733211101111111122222
Q ss_pred cccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644 364 SSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 419 (421)
Q Consensus 364 ~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~ 419 (421)
...|+.++.+|. .++ ..++.+....-+...+..--.-.++++++.+.++.|+.|
T Consensus 320 --g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 --GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred --CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 226788888887 666 234443333222222222222233444444456678876
No 299
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.64 E-value=3.6e-05 Score=70.01 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=120.4
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee-cCCCCCCcc---------CCCeeEEEEecCCCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPSNMDDL---------TEVITSAEFHPIYCNLLAYSS 207 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~-~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~ 207 (421)
...+....|+|+|+.++...++.|.+++.. .+...++.. .....+.|- -+.-..+-||||+ +.|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence 456778899999999999988899999987 344443321 100000000 1223568899999 7777665
Q ss_pred c-CCeEEEEECC---cccc----cc-----------cchh--hhccccccCCCc-c---cccccccceeEEEEcCCCCEE
Q 014644 208 S-RGFVRLVDMR---QSAL----CD-----------HSAR--ILRDAAESHGSK-S---FFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 208 ~-d~~v~iwd~~---~~~~----~~-----------~~~~--~~~~h~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l 262 (421)
. +..|+.+.+. .... .. .... +++. ....... . .+......+..+.|.++++.+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~-~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL-ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES-SSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC-CCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 3 3444443322 1100 00 0000 0110 0000000 0 012235678899999999844
Q ss_pred E-Ee---c-C-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEc-CCCC-EEEEeeCCCeEEEEec
Q 014644 263 L-SR---D-Y-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSH 333 (421)
Q Consensus 263 ~-~~---~-~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~-~l~~~s~dg~i~iwd~ 333 (421)
+ .- . . ..+.++|..+ +....... .....+... ....|. +++. +|.....+|.-+|+-+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEEcccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 4 32 1 2 4567778765 44332222 222222111 245554 6554 4445556776555544
Q ss_pred CCCCCceeEEecCCCCccce-eeecCCcccccccceeeeecc--cCc-ccC--CCC-CccccccccccCe-EEEEEccCC
Q 014644 334 GVGSAGGITVEAGKNENRKP-ILQAAPRARRSSLSNLTRGLY--RQA-HEN--SSS-GHHELSYNLSSKL-LHLAWHPTT 405 (421)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~--d~~-~iw--~~~-~~~~~~~~~~~~v-~~~~~spd~ 405 (421)
.........+....-.|..+ .+... .+. ...++.. -.. .+| ... ......+...... ..++|||++
T Consensus 266 ~~~~~~~~~lT~G~~~V~~i~~~d~~-~~~-----iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 266 DLDGGKPRQLTSGDWEVTSILGWDED-NNR-----IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ETTSSEEEESS-SSS-EEEEEEEECT-SSE-----EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred cccccceeccccCceeecccceEcCC-CCE-----EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 44334445555555556443 34443 122 2333333 233 677 222 2222222222222 589999999
Q ss_pred CeEEEec
Q 014644 406 NLIACAN 412 (421)
Q Consensus 406 ~~la~~~ 412 (421)
++++...
T Consensus 340 ~y~v~~~ 346 (353)
T PF00930_consen 340 KYYVDTY 346 (353)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9988654
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=3.7e-07 Score=53.21 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=31.4
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
+.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 37899999999999998 9999999999999997
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=3.5e-08 Score=89.99 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=108.5
Q ss_pred CCCCcceEEEeecC-CCCEEEEE-c----CCcEEEEeCCCCc-eeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEE
Q 014644 135 HAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD-QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 135 ~~h~~~v~~l~~~~-~~~~l~s~-~----d~~i~lwd~~~~~-~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~ 206 (421)
.+|....++++|++ |...||+| + |..+.|||+.+.- .+... ..+.+ ......+++|..+. +++.+|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG 172 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG 172 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence 67778899999988 67788887 4 7789999998321 11111 11111 33445688999887 889999
Q ss_pred EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecCCeEEEEE-CCCCCcceeE
Q 014644 207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRMDSTPVAT 284 (421)
Q Consensus 207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~i~i~d-~~~~~~~~~~ 284 (421)
...+.+.++|+|...... ..+. ...+..+..+| .+.|+++-.++.|-+|| .++-..++..
T Consensus 173 m~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred cccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHHH
Confidence 999999999999543211 1111 23577888899 78899988889999999 4433344433
Q ss_pred EeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEee-CCCeEEEEecCC
Q 014644 285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGS-YSNLLRIFSHGV 335 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s-~dg~i~iwd~~~ 335 (421)
+...+...+ + -+..++|+|.. ..+++.+ +.++|+++|+..
T Consensus 235 i~~~~N~~~--------~---~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 235 ILRNENKKP--------K---QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HhhCCCCcc--------c---ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 322222110 0 01689999952 2344444 467899999874
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.46 E-value=0.00026 Score=60.99 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=119.0
Q ss_pred EEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe-cCCCCeEEEEEcCCeEEEEECCc
Q 014644 143 SISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 143 ~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d~~v~iwd~~~ 219 (421)
++.|.+ ++.++++. ..+.|..|+.. .+. ...+. . ....++++. +++ .|+.+..++ +.++|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~-~~~-~~~~~--------~-~~~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPD-TGE-VEVID--------L-PGPNGMAFDRPDG--RLYVADSGG-IAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-TTE-EEEEE--------S-SSEEEEEEECTTS--EEEEEETTC-EEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECC-CCe-EEEEe--------c-CCCceEEEEccCC--EEEEEEcCc-eEEEecCC
Confidence 567887 67777777 89999999998 333 22221 1 116777888 564 455555554 55669887
Q ss_pred ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC---------CeEEEEECCCCCcceeEEeeccC
Q 014644 220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------MNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
++.. ..... ... .......+.+++.|+|++.++... +.|..++.. ++.......-..
T Consensus 70 g~~~----~~~~~-~~~-------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~ 135 (246)
T PF08450_consen 70 GKVT----VLADL-PDG-------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGF 135 (246)
T ss_dssp TEEE----EEEEE-ETT-------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESS
T ss_pred CcEE----EEeec-cCC-------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCccc
Confidence 6532 11111 000 001457889999999997776432 235555543 333333322222
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCC-c--eeEE-ecCCC--CccceeeecCCcccc
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSA-G--GITV-EAGKN--ENRKPILQAAPRARR 363 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~-~--~~~~-~~~~~--~~~~~~~~~~~~~~~ 363 (421)
+ ..++|+|+++.|+ +-+..+.|..+++..... . ...+ ..... ....+++..+ |+
T Consensus 136 p----------------NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~- 196 (246)
T PF08450_consen 136 P----------------NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GN- 196 (246)
T ss_dssp E----------------EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S--
T ss_pred c----------------cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CC-
Confidence 2 6899999999776 556788999999875433 1 1122 21221 1334555444 33
Q ss_pred cccceeeeecccCc-ccCCCCCccccccc-cccCeEEEEE-ccCCCeEEEec
Q 014644 364 SSLSNLTRGLYRQA-HENSSSGHHELSYN-LSSKLLHLAW-HPTTNLIACAN 412 (421)
Q Consensus 364 ~~~~~l~~g~~d~~-~iw~~~~~~~~~~~-~~~~v~~~~~-spd~~~la~~~ 412 (421)
..++....+. ..++..+.+...+. ....+++++| .|+.+.|.+.+
T Consensus 197 ----l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 197 ----LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ----EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ----EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 3333322222 44433333333322 2358999999 47766665543
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.9e-06 Score=77.39 Aligned_cols=142 Identities=12% Similarity=-0.013 Sum_probs=97.6
Q ss_pred cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
..+.|++++ +++|+-| .+|.|++.+.. +..... ..|... .-+| .++++|+.||.|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~--~~~~~~--------~~~s~~------~~~G-ey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ--GNPKTN--------FDHSSS------ILEG-EYVASCSDDGKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC--Cccccc--------cccccc------ccCC-ceEEEecCCCcEEEeec
Confidence 456677775 7889999 99999999987 332221 223332 5567 99999999999999988
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----CCEEEEecC-CeEEEEECCCCCccee-EEeeccC
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVA-TFKIHEH 290 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~-~~i~i~d~~~~~~~~~-~~~~~~~ 290 (421)
-+.+.. ..++- ..++.+++++|+ .+.+++|+. | +.++.-+--+.... .+....+
T Consensus 101 ~~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 101 FTDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred cCCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 776543 33333 458999999998 567888887 7 88876542122221 1233333
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
++ .+++| .|.+||-++.+| |++||+.+.
T Consensus 162 ~I---------------~~i~W--~g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 162 PI---------------HSIKW--RGNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred ce---------------EEEEe--cCcEEEEecCCC-cEEEecccc
Confidence 33 78898 577887777555 889999877
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.00023 Score=65.64 Aligned_cols=235 Identities=13% Similarity=0.043 Sum_probs=118.8
Q ss_pred CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccc
Q 014644 46 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 125 (421)
Q Consensus 46 ~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 125 (421)
++..++.++.|+.|..+|..+++..-... ..+.+.+. .... ....+.. ..++.+..+|..++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~-----------p~v~-~~~v~v~---~~~g~l~a~d~~tG- 165 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSP-----------PLVA-NGLVVVR---TNDGRLTALDAATG- 165 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecC-----------CEEE-CCEEEEE---CCCCeEEEEEcCCC-
Confidence 35678888899999999998887433222 11111100 0000 1111111 01234555555554
Q ss_pred eeeeeeeecCCCCcce-----EEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC--CC---e-eEE
Q 014644 126 HARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSA 193 (421)
Q Consensus 126 ~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~~~ 193 (421)
+.+..+ ......+ .+.... + ..++.+ .++.+..+|.+++....+. .... ..+.. .. + .+.
T Consensus 166 --~~~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~-~~~~--~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 166 --ERLWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ-RVAL--PKGRTELERLVDVDGDP 237 (377)
T ss_pred --ceeeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee-cccc--CCCCCchhhhhccCCcc
Confidence 333333 1111110 011111 2 356667 8899999998744333321 1000 00000 00 1 111
Q ss_pred EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEE
Q 014644 194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 272 (421)
Q Consensus 194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i 272 (421)
.+ .+ ..++.++.+|.+..+|..+++.. |.. . ......... ++..++.++ +|.+..
T Consensus 238 ~~--~~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~------------~~~~~~p~~--~~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 238 VV--DG-GQVYAVSYQGRVAALDLRSGRVL------WKR-D------------ASSYQGPAV--DDNRLYVTDADGVVVA 293 (377)
T ss_pred EE--EC-CEEEEEEcCCEEEEEECCCCcEE------Eee-c------------cCCccCceE--eCCEEEEECCCCeEEE
Confidence 12 23 57778888999999999887632 222 0 001112222 345555554 499999
Q ss_pred EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644 273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 348 (421)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 348 (421)
+|..+ ++.+.......... . .+... .+..|++++.+|.|+++|..++ +....+..+..
T Consensus 294 ~d~~t-G~~~W~~~~~~~~~--~------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~ 351 (377)
T TIGR03300 294 LDRRS-GSELWKNDELKYRQ--L------------TAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGS 351 (377)
T ss_pred EECCC-CcEEEccccccCCc--c------------ccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCC
Confidence 99976 76654432111100 0 12222 3668889999999999999887 55555554443
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.9e-05 Score=67.67 Aligned_cols=282 Identities=16% Similarity=0.100 Sum_probs=158.9
Q ss_pred cccccEEEEEEEEcCCCCeEEEEeC-CCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 31 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 31 ~h~~~V~~v~~~~~~~~~~l~t~s~-d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.|-..|.+++- +-++.++.|.+. |+.+|++|+++-.+. .+.....++.+..+ ....+...+...
T Consensus 51 aHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv------------~skGd~~s~IAV 116 (558)
T KOG0882|consen 51 AHLGVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV------------TSKGDKISLIAV 116 (558)
T ss_pred HHHHHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe------------cCCCCeeeeEEe
Confidence 46667777777 678889999888 999999999876522 23322333322211 111111222222
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeee---eecCCC---
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI---VDMKPS--- 181 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~---~~~~~~--- 181 (421)
+....+.+.+.|-... ......+..-|..+|..+.+++.+..+++. ..|.|.-|.....-+..+. +..|..
T Consensus 117 s~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred ecccCCCcEEECCcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 2222334444443322 112222335699999999999999999998 8999999998721111110 111110
Q ss_pred -CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc---------------ccccc
Q 014644 182 -NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFTE 245 (421)
Q Consensus 182 -~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~---------------~~~~~ 245 (421)
.+..-.....++.|+|++ ..+.+-+.|..|++++++++++....-.........+... ..+..
T Consensus 195 y~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek 273 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK 273 (558)
T ss_pred hcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence 112234567899999999 9999999999999999999876421111000000000000 00122
Q ss_pred cc-cceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccc-ccccCC---------Ccce-eeeEEEEc
Q 014644 246 II-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL-CDLYNN---------DSIF-DKFECSVS 313 (421)
Q Consensus 246 ~~-~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~-~~~~~~~s 313 (421)
|. ..-..+.|...|++|+-++--.|++.++.+ +++++.+-..+ .+..+ -.+|+. +... ....+.+.
T Consensus 274 ~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~ 351 (558)
T KOG0882|consen 274 HGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQ 351 (558)
T ss_pred hcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccC
Confidence 22 234567899999999999875589999987 77666553222 21110 000000 0000 00123466
Q ss_pred CCCCEEEEeeCCCeEEEE
Q 014644 314 GDGLHFATGSYSNLLRIF 331 (421)
Q Consensus 314 p~~~~l~~~s~dg~i~iw 331 (421)
+|...++++-....++++
T Consensus 352 ~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 352 KDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred CCCeEEEeeeecceEEEE
Confidence 677777777777778877
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=6.3e-05 Score=70.85 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=156.7
Q ss_pred EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
-+++.| + .+.++|-|+.. .|.+=|..+-+ ++.+ ..|+..|..+.|.+..-...-.+.. ...+...+.+-.+
T Consensus 18 ~~A~Dw--~-~~GLiAygshs-lV~VVDs~s~q~iqsi--e~h~s~V~~VrWap~~~p~~llS~~--~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 18 RNAADW--S-PSGLIAYGSHS-LVSVVDSRSLQLIQSI--ELHQSAVTSVRWAPAPSPRDLLSPS--SSQLLIASADISG 89 (1062)
T ss_pred cccccc--C-ccceEEEecCc-eEEEEehhhhhhhhcc--ccCccceeEEEeccCCCchhccCcc--ccceeEEeccccC
Confidence 477888 3 35678877754 67777765544 2222 3366778888888754433222211 1222222334467
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecC---CC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
.+.+||.... ..+..+ ..|..++..++|-+ +. ..|++- ...+|.+|+..+++..++. .-....
T Consensus 90 rIil~d~~~~---s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~i 157 (1062)
T KOG1912|consen 90 RIILVDFVLA---SVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEI 157 (1062)
T ss_pred cEEEEEehhh---hhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcc
Confidence 8899998876 445555 78899999999965 44 344444 7889999999966555542 223355
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhc---cccccCC-Cccc------ccc-----cccceeEEE
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHG-SKSF------FTE-----IIASISDIK 254 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~h~~~~~-~~~~------~~~-----~~~~v~~~~ 254 (421)
..|+.+.|-.++.+..-+..|.+.+.+.......+...+.+. .|.+... .+.. ... .......++
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 677999997667777777778777776544322221112221 1111000 0000 000 001133567
Q ss_pred EcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEE
Q 014644 255 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIF 331 (421)
Q Consensus 255 ~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iw 331 (421)
|+|.-+.++.... ..+.++|++- ..++.......... -=+.+-|+ ...|++...||.+.||
T Consensus 238 f~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEEecCCeEEEE
Confidence 8887666655544 7899999986 66666665554432 12456665 4568899999999999
Q ss_pred ecCC
Q 014644 332 SHGV 335 (421)
Q Consensus 332 d~~~ 335 (421)
-.+.
T Consensus 302 vrk~ 305 (1062)
T KOG1912|consen 302 VRKE 305 (1062)
T ss_pred Eeec
Confidence 7654
No 307
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=2.7e-05 Score=71.65 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=97.9
Q ss_pred CCCCcceEEEeecCCCCEEEEE--c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644 135 HAHDFNINSISNNSDCETFVSA--D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 209 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~--~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 209 (421)
..-...+..-+|+|+++.++.. . . ..+.+++++. ++...+. ++. +.-...+|+|||.+++++...|
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~-g~~~~i~-----~~~---g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT-GKRPVIL-----NFN---GNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccC-Cccceee-----ccC---CccCCccCCCCCCEEEEEECCC
Confidence 3445567788999999987763 2 2 3599999984 4333332 222 3345568999995555666677
Q ss_pred CeE--EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE
Q 014644 210 GFV--RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF 285 (421)
Q Consensus 210 ~~v--~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~ 285 (421)
|.. .++|+..+... ++... .+.-..-.|+|||++|+..++ |.-.||-+..++.....+
T Consensus 260 g~~~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 260 GSPDIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred CCccEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 764 55577665422 21111 233347789999999987654 544444433334444444
Q ss_pred eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCe--EEEEecCCCC
Q 014644 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS 337 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~--i~iwd~~~~~ 337 (421)
....... ....|+|||++|+..+. +|. |.+.|+.++.
T Consensus 322 T~~~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 322 TFSGGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eccCCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 4333321 25689999999887764 344 6667776663
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00018 Score=68.69 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCCcc-eEEEeecCCCCEEEE-E-cCC----cEEEEeCCCC-----ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644 136 AHDFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 203 (421)
Q Consensus 136 ~h~~~-v~~l~~~~~~~~l~s-~-~d~----~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 203 (421)
.+... |..+....+..+|++ | ++. .|++|+++.. .+++....+-+...+....++.+++.+.+- +.+
T Consensus 62 a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~I 140 (933)
T KOG2114|consen 62 AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTI 140 (933)
T ss_pred ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEE
Confidence 34434 444433434456666 4 444 6999998743 233422221111223345778899999997 999
Q ss_pred EEEEcCCeEEEEE--CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE-EEEecCCeEEEEECCCCCc
Q 014644 204 AYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDST 280 (421)
Q Consensus 204 ~s~~~d~~v~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~i~d~~~~~~ 280 (421)
|+|-.+|.|..+. +...+.. +.--. .....+|+++++..+++. +++++-..|.+|.+.. ..
T Consensus 141 v~Gf~nG~V~~~~GDi~RDrgs----r~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~ 204 (933)
T KOG2114|consen 141 VCGFTNGLVICYKGDILRDRGS----RQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RT 204 (933)
T ss_pred EEEecCcEEEEEcCcchhcccc----ceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CC
Confidence 9999999998883 2211100 11111 112679999999999887 3344446899999974 33
Q ss_pred ce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecCCC
Q 014644 281 PV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 281 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~~~ 336 (421)
+. ..+..+.... .+.++++... +++++ +..+.+|+....
T Consensus 205 p~~~~ld~~G~~l---------------nCss~~~~t~qfIca~--~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 205 PSLKVLDNNGISL---------------NCSSFSDGTYQFICAG--SEFLYFYDSDGR 245 (933)
T ss_pred cceeeeccCCccc---------------eeeecCCCCccEEEec--CceEEEEcCCCc
Confidence 33 3344444322 5667776544 44444 357889987754
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=8.5e-05 Score=68.22 Aligned_cols=116 Identities=14% Similarity=0.057 Sum_probs=77.4
Q ss_pred CeeEEEEecCCCCeEEEEE----cCCeE----EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 189 VITSAEFHPIYCNLLAYSS----SRGFV----RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~----~d~~v----~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
...++.|+-..++.+.+.. .+|.+ .+|++..++...-.+..+.. ...+.+++++|+.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL--------------~s~v~~ca~sp~E~ 272 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPL--------------PSQVICCARSPSED 272 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEec--------------CCcceEEecCcccc
Confidence 3467778775556666543 34433 45666544322111122222 56899999999999
Q ss_pred EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.++.|.. |.|.+||... +. ..+....-.. ..++|+|+|..+++|+..|.+.+||+.-.
T Consensus 273 kLvlGC~DgSiiLyD~~~-~~--t~~~ka~~~P---------------~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTR-GV--TLLAKAEFIP---------------TLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eEEEEecCCeEEEEEcCC-Ce--eeeeeecccc---------------eEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9988864 9999999865 32 2222111111 67999999999999999999999998876
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.28 E-value=0.00063 Score=58.61 Aligned_cols=230 Identities=11% Similarity=0.027 Sum_probs=126.9
Q ss_pred ceEEEeecC-CCCEEEEE-cCC-cEEEEeCCCCceeeeeeecC-CCCCCccCCCeeEEEEecCCCCeEEEEEc-----CC
Q 014644 140 NINSISNNS-DCETFVSA-DDL-RINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RG 210 (421)
Q Consensus 140 ~v~~l~~~~-~~~~l~s~-~d~-~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----d~ 210 (421)
+...++.+| ....++.+ .-| ...+||.. +++....+... ...+.+| -+|+||| ++|++.-. .|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGH------g~fs~dG-~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGH------GVFSPDG-RLLYTTENDYETGRG 77 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecC------EEEcCCC-CEEEEeccccCCCcE
Confidence 345677888 45566667 544 57899998 45555444211 1223444 4799999 88887653 47
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--------CeE-----------E
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--------MNL-----------K 271 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------~~i-----------~ 271 (421)
.|-|||...+-.. +..|.. +--....+.+.|||+.|+.+.. |.- .
T Consensus 78 ~IgVyd~~~~~~r---i~E~~s-------------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 78 VIGVYDAARGYRR---IGEFPS-------------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred EEEEEECcCCcEE---EeEecC-------------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 8999999832111 122332 2334567889999988776532 222 2
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe-------EEEEecCCCCCceeEE-
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-------LRIFSHGVGSAGGITV- 343 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~-------i~iwd~~~~~~~~~~~- 343 (421)
..|..+ ++.+....... .+.-..+..+++.++|..++..-..|. |.+++.... ...+
T Consensus 142 ~ld~~s-G~ll~q~~Lp~-----------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~ 206 (305)
T PF07433_consen 142 YLDARS-GALLEQVELPP-----------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLP 206 (305)
T ss_pred EEecCC-CceeeeeecCc-----------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceecc
Confidence 222332 44443322211 111112378999999887766554442 444443321 1112
Q ss_pred ------ecCCCCccceeeecCCcccccccceeeeecccCc--ccC-CCCCccccccccccCeEEEEEccCCCeEEEecCC
Q 014644 344 ------EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN 414 (421)
Q Consensus 344 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~ 414 (421)
..-.+.+.++++..+ + ..++..+-.|. .+| ...+.+.... .-..+..++-.+++ ++++.+.+
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~--g-----~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRD--G-----RLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CChHHHHhhCCceEEEEEeCC--C-----CEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEeCCCc
Confidence 233466778888877 3 36777776666 788 2222222221 12345567777777 66666655
Q ss_pred ceE
Q 014644 415 SLF 417 (421)
Q Consensus 415 ~~~ 417 (421)
.+.
T Consensus 278 ~~~ 280 (305)
T PF07433_consen 278 QLI 280 (305)
T ss_pred cEE
Confidence 543
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.27 E-value=0.00045 Score=65.19 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=53.2
Q ss_pred cceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc-----------ceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644 248 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 314 (421)
Q Consensus 248 ~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 314 (421)
.....+.++|||+++++++. .++.++|+.+... .+........+ ...+|++
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 45678999999999988754 8999999976221 12222222222 4789999
Q ss_pred CCCEEEEeeCCCeEEEEecCC
Q 014644 315 DGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~ 335 (421)
+|....+-.-|..|..||+..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 998777788899999999886
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=5.7e-06 Score=70.30 Aligned_cols=147 Identities=6% Similarity=-0.015 Sum_probs=100.6
Q ss_pred EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEE
Q 014644 194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 272 (421)
Q Consensus 194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i 272 (421)
+|+-+...+-++.+.+-.|-+-|+.++-. +.|.. .+.|.++.|...+.++..|.. |.|..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~s--------------ksDVfAlQf~~s~nLv~~GcRngeI~~ 278 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQS--------------KSDVFALQFAGSDNLVFNGCRNGEIFV 278 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-----ccccc--------------chhHHHHHhcccCCeeEecccCCcEEE
Confidence 55543212335566777788888887642 33333 568899999988889998876 99999
Q ss_pred EECCCC----CcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCC--ceeEEec
Q 014644 273 WDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA--GGITVEA 345 (421)
Q Consensus 273 ~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~ 345 (421)
+|++.. +.+...+. |...+ +++..-. ++++|++.+.+|+|++||++..+. .+..+.|
T Consensus 279 iDLR~rnqG~~~~a~rly-h~Ssv---------------tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 279 IDLRCRNQGNGWCAQRLY-HDSSV---------------TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred EEeeecccCCCcceEEEE-cCcch---------------hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 999863 33444443 44333 4554443 678999999999999999986522 2677888
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 380 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw 380 (421)
|...-.-+-+.-+.. ...++++++|-. +||
T Consensus 343 HvN~~a~l~~~v~~e-----eg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEE-----EGSIFSVGDDCYTRIW 373 (425)
T ss_pred ccccccccccccccc-----cceEEEccCeeEEEEE
Confidence 876655444444322 347888999988 999
No 313
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.00065 Score=62.03 Aligned_cols=251 Identities=14% Similarity=0.058 Sum_probs=118.4
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.|+.+.| .++..-|+.|-..|.|-||.+...+...-. ...+-..+ .......+... ..
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~---~~~~~~~~-------~~~~~~~~~~~----------~~ 60 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNR---EQPPDLDY-------NFRRFSLNNSP----------GK 60 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE----------------------------S--GGGSS-----------S
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCcc---CCCcccCc-------ccccccccCCC----------cc
Confidence 5788999 577888999999999999998765421100 00000000 00000000000 00
Q ss_pred ceeEEeecc---cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC-CCCccCCC
Q 014644 115 ATKIANVGN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEV 189 (421)
Q Consensus 115 ~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~ 189 (421)
.+.+-+-.. .....+...+ ....++|++++.|.-| ++|.| .+|++.|.|++ +...+....+... .-......
T Consensus 61 l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~ 137 (395)
T PF08596_consen 61 LTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSY 137 (395)
T ss_dssp EEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----
T ss_pred eEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeeccccccccccccccC
Confidence 111111000 1112455555 6668999999998444 99999 99999999998 4444333322221 11223456
Q ss_pred eeEEEEec---CC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE-EcCC---
Q 014644 190 ITSAEFHP---IY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND--- 258 (421)
Q Consensus 190 v~~~~~~p---~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~-~s~~--- 258 (421)
++++.|.. .+ .-.+++|...|.+.+|.+.-... ......+.. . ...+.+++..+. ++.+
T Consensus 138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g~f~v~~~~-~--------~~~~~~~i~~I~~i~~~~G~ 207 (395)
T PF08596_consen 138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-GRFSVQFAG-A--------TTNHDSPILSIIPINADTGE 207 (395)
T ss_dssp EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G-EEEEEEE-E--------E--SS----EEEEEETTT--
T ss_pred eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-CceEEEEee-c--------cccCCCceEEEEEEECCCCC
Confidence 88888872 11 13677888999999998752110 000000111 0 011223333332 2111
Q ss_pred ------------------CCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc-----CC
Q 014644 259 ------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-----GD 315 (421)
Q Consensus 259 ------------------~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----p~ 315 (421)
..+++.+++..++++...+ .+...+........ ..+++- ..
T Consensus 208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~ 271 (395)
T PF08596_consen 208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNG 271 (395)
T ss_dssp B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEE
T ss_pred cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCC
Confidence 1256666778899999875 44433332111111 234442 25
Q ss_pred CCEEEEeeCCCeEEEEecCCC
Q 014644 316 GLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 316 ~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+..|++-..+|.|+++.+..-
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT-
T ss_pred ceEEEEEECCCcEEEEECCCc
Confidence 667888889999999999865
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00015 Score=68.76 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=97.1
Q ss_pred cCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC----CCCeEEEEEcCCeEEEEECCccc
Q 014644 147 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 147 ~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~d~~v~iwd~~~~~ 221 (421)
..+|.++++| .||+|.|-.+.+ .+....+ ....++.+++++|+ ..+.+++|+.-| +.++.-+--.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~-~~~~~~~--------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFT-DDEITQY--------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccC-CccceeE--------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 5579999999 999999999884 3333332 24578999999998 236899999888 7766532211
Q ss_pred ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccC-cccccccccC
Q 014644 222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYN 300 (421)
Q Consensus 222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (421)
.. .... +..-.++|.++.|. |.+||-+++-.|++||+.+ ++.+..+..... ..+.+.
T Consensus 150 nk----~~v~-----------l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R~e~f---- 207 (846)
T KOG2066|consen 150 NK----DSVV-----------LSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVRPELF---- 207 (846)
T ss_pred Cc----ccee-----------eecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCCcccC----
Confidence 11 0001 12236899999998 8899999885699999986 555555443322 111110
Q ss_pred CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644 301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
-..+.|.++.++++ | ...+|+|..++
T Consensus 208 ------pphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 208 ------PPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred ------CCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 03678887765443 3 34578888877
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.0004 Score=58.78 Aligned_cols=220 Identities=10% Similarity=0.065 Sum_probs=109.2
Q ss_pred CCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 135 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
.+-...+..|+|+|+...|++ . ..+.|...+.+ ++.++.+. +.+ .+....+++..++ .++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDG-FGDYEGITYLGNG-RYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCC-CCCceeEEEECCC-EEEEEEcCCCcE
Confidence 566667999999998666665 5 67777777765 56666653 333 3557889998877 666666568999
Q ss_pred EEEECCcccccc--cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCC--CCcceeEEe-
Q 014644 213 RLVDMRQSALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATFK- 286 (421)
Q Consensus 213 ~iwd~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~--~~~~~~~~~- 286 (421)
.++++....... .....+.. .....++..+..++|+|.++.|+.+.+ .-..||.++. ....+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 999885432110 00011111 001123556899999998776666544 4455555542 111111111
Q ss_pred -eccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644 287 -IHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364 (421)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (421)
.... ..-...+..+++++|. +.+++....+..|.++|.. + .....+.-..+
T Consensus 161 ~~~~~---------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g---------------- 213 (248)
T PF06977_consen 161 QDLDD---------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRG---------------- 213 (248)
T ss_dssp HHHH----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STT----------------
T ss_pred ccccc---------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCc----------------
Confidence 1110 0112223468899996 5666667778888888843 3 22222111000
Q ss_pred ccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 419 (421)
Q Consensus 365 ~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~ 419 (421)
..+ +...-.....++|.++|++.+++-.+..|.|
T Consensus 214 ---------~~g------------l~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 214 ---------FHG------------LSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---------GGG-------------SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred ---------ccC------------cccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 000 0000123458999999988888777777776
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=5.3e-05 Score=69.49 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=61.6
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
-.....|.+++++|+.+.|+.| .||+|.+||....-... ....-....++|+|+| ..+++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 3567789999999999999999 99999999987332211 1223457889999999 9999999999999
Q ss_pred EEECCccc
Q 014644 214 LVDMRQSA 221 (421)
Q Consensus 214 iwd~~~~~ 221 (421)
+||+.-..
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99987654
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00026 Score=61.80 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=66.7
Q ss_pred eeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 205 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 205 (421)
+..+.+ .+|...|++++|+|..+ ++..+ .+.+|+|.|++ ....+... ..+ ..+++++|.-+..++|+.
T Consensus 184 kssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy-------~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 184 KSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSY-------IAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred chhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeehe-------ecc-CCceeeeeccCCcceeEE
Confidence 334444 78889999999999877 55556 89999999999 44444332 334 789999999998788888
Q ss_pred EEcCCeEEEEECCccc
Q 014644 206 SSSRGFVRLVDMRQSA 221 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~ 221 (421)
|-..|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999999864
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0042 Score=53.63 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=123.7
Q ss_pred EEEEEEEcC-CCCeEEEEeCCC-cEEEeecCCceeEEeeecCCCCCccccccccccccee-eccCCCCceeeeecccc--
Q 014644 37 NRVRWCAAP-NGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM-NEHNPPSFAHGYHLEWT-- 111 (421)
Q Consensus 37 ~~v~~~~~~-~~~~l~t~s~d~-~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-- 111 (421)
..++. +| ....++.+-.-| ...+||..+++....... .. ...++ -..+++++.++.+...+
T Consensus 8 H~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~-----------gRHFyGHg~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 8 HGVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP-----------GRHFYGHGVFSPDGRLLYTTENDYE 73 (305)
T ss_pred cceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC-----------CCEEecCEEEcCCCCEEEEeccccC
Confidence 44555 45 345555565555 467788888773332211 11 11222 23456667666665553
Q ss_pred -cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEc--------CCcEEE-----------EeCCCCce
Q 014644 112 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD--------DLRINL-----------WNLEISDQ 171 (421)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--------d~~i~l-----------wd~~~~~~ 171 (421)
..+.+-+||.... .+.+..+ ..|.-.-..+.+.|||+.|+.+. .|..++ .|.. +++
T Consensus 74 ~g~G~IgVyd~~~~--~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ 149 (305)
T PF07433_consen 74 TGRGVIGVYDAARG--YRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGA 149 (305)
T ss_pred CCcEEEEEEECcCC--cEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCc
Confidence 2348999999832 3667777 67777778899999998888752 233333 3333 333
Q ss_pred eeeeeecCCCCC--CccCCCeeEEEEecCCCCeEEEEEcCC-------eEEEEECCcccccccchhhhccccccCCCccc
Q 014644 172 CFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSF 242 (421)
Q Consensus 172 ~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~ 242 (421)
++... .+ .-|...|+.+++.++| ..++..-..| .|-+++.... . ..+.. ....
T Consensus 150 ll~q~-----~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~ 211 (305)
T PF07433_consen 150 LLEQV-----ELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQ 211 (305)
T ss_pred eeeee-----ecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHH
Confidence 33332 23 3367789999999998 4444332222 1223322211 0 11110 0000
Q ss_pred ccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeecc
Q 014644 243 FTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
...-.+.+-+|++++++.++++.+- +.+.+||..+ +..+.......
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D 259 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPD 259 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCc
Confidence 1122568999999999998877653 8999999986 77766554433
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.12 E-value=0.00013 Score=70.04 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=97.7
Q ss_pred ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---------C
Q 014644 140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------R 209 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---------d 209 (421)
.|.-++. +++++.+| ..|+|.+-|.+ .-+.+..+ ..|++.|..+. -.| ++|++++. |
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~-s~~~iht~-------~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPN-SFETIHTF-------DAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCC-cCceeeee-------eccccceeeee--ccC-CeEEEeeccccccccccc
Confidence 3544444 57899999 99999999998 55555544 78999888754 456 77888763 5
Q ss_pred CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcc-eeEEe
Q 014644 210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTP-VATFK 286 (421)
Q Consensus 210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~-~~~~~ 286 (421)
..|++||+|+.+.. .-+.. .-...-+.|.|. ...++..+. |+..+.|..+-+.+ ...+.
T Consensus 246 ~FvkVYDLRmmral----~PI~~--------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~ 307 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRAL----SPIQF--------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM 307 (1118)
T ss_pred chhhhhhhhhhhcc----CCccc--------------ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence 67899999986543 11111 011244667774 234444444 99999994332333 22222
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 332 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd 332 (421)
.+.... .+..++++++++.|+.|..+|.|.+|-
T Consensus 308 v~p~~s-------------~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VNPNGS-------------GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EccCCC-------------cceeEEecCCCceEEEecccCcEeeec
Confidence 222110 016899999999999999999999998
No 320
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.0002 Score=66.03 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=97.7
Q ss_pred eeeccCCCCceeeeeccccccc--ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEE--eC
Q 014644 93 FMNEHNPPSFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NL 166 (421)
Q Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lw--d~ 166 (421)
+....+.++...++...+.... .+.++++.++ +..+.. .-.+.-...+|+|||+.|+.+ .|+...|| |+
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 3444555555555544443222 4555666655 222222 112233456899999998875 67765555 55
Q ss_pred CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEE--EECCcccccccchhhhccccccCCCcccc
Q 014644 167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRL--VDMRQSALCDHSARILRDAAESHGSKSFF 243 (421)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~i--wd~~~~~~~~~~~~~~~~h~~~~~~~~~~ 243 (421)
. +++..+ + ....+.-..-.|+|+| +.|+..+ ..|.-.| +|+..+... ..++..
T Consensus 270 ~-~~~~~~-L-------t~~~gi~~~Ps~spdG-~~ivf~Sdr~G~p~I~~~~~~g~~~~---riT~~~----------- 325 (425)
T COG0823 270 D-GKNLPR-L-------TNGFGINTSPSWSPDG-SKIVFTSDRGGRPQIYLYDLEGSQVT---RLTFSG----------- 325 (425)
T ss_pred C-CCccee-c-------ccCCccccCccCCCCC-CEEEEEeCCCCCcceEEECCCCCcee---EeeccC-----------
Confidence 5 333222 1 2233333467899999 6555554 5565444 455544321 011111
Q ss_pred cccccceeEEEEcCCCCEEEEec--CCe--EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644 244 TEIIASISDIKFANDGQHLLSRD--YMN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 319 (421)
Q Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~--~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 319 (421)
..-..-.|+|||++|+..+ .|. |.+.|+.+ +...+.+...... ...+|.|+++.+
T Consensus 326 ----~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt~~~~~----------------e~ps~~~ng~~i 384 (425)
T COG0823 326 ----GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILTSTYLN----------------ESPSWAPNGRMI 384 (425)
T ss_pred ----CCCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEccccccC----------------CCCCcCCCCceE
Confidence 1222778999999998764 354 66677665 3223333322221 356788888887
Q ss_pred EEeeC
Q 014644 320 ATGSY 324 (421)
Q Consensus 320 ~~~s~ 324 (421)
+..+.
T Consensus 385 ~~~s~ 389 (425)
T COG0823 385 MFSSG 389 (425)
T ss_pred EEecc
Confidence 75554
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=7.1e-05 Score=71.81 Aligned_cols=175 Identities=10% Similarity=0.059 Sum_probs=119.4
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 279 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~ 279 (421)
..++-|+....+..+|+++.+.. +..... .+.+.- +..+++++.+|.. |+|.+-|.++ -
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~-------------a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s-~ 207 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKET----RTTNVS-------------ASGVTI--MRYNNRNLFCGDTRGTVFLRDPNS-F 207 (1118)
T ss_pred cceeecchhhheeeeecccceee----eeeecc-------------CCceEE--EEecCcEEEeecccceEEeecCCc-C
Confidence 55777887888889999886543 222220 112333 3456889999977 9999999987 8
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---------CCeEEEEecCCCCCceeEEecCCCCc
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------SNLLRIFSHGVGSAGGITVEAGKNEN 350 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~ 350 (421)
+.++++..|.+.+ ..|+-.|+.|++++. |..|++||++.- ..+..++-+.++
T Consensus 208 ~~iht~~aHs~si-----------------SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P- 268 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSI-----------------SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP- 268 (1118)
T ss_pred ceeeeeeccccce-----------------eeeeccCCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-
Confidence 9999999999854 466668999998875 456899999986 445555555555
Q ss_pred cceeeecCCcccccccceeeeecccCc-ccCC---CCCc---cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644 351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGH---HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 420 (421)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~---~~~~---~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~ 420 (421)
.-+.|.|.... .++..+..|. .+-+ ..++ ..........+..+++|+.++.||.|. .|.+-+|.
T Consensus 269 ~flrf~Psl~t------~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 269 QFLRFHPSLTT------RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhhcccccc------eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 34456665432 4666676666 4442 2222 111223344589999999999999998 67788884
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.02 E-value=0.0009 Score=66.61 Aligned_cols=234 Identities=17% Similarity=0.160 Sum_probs=127.9
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
.+.|.++.|..+...++.+ ..|.|.+-|..+. ...+. ..-...|.+++|+||+ ..++..+.++++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eiv-------g~vd~GI~aaswS~De-e~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIV-------GNVDNGISAASWSPDE-ELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeee-------eeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence 3689999999998888888 8999998888732 22222 2345679999999999 9999888888876543
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 296 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
- +-.+... +.+.. + ....+..-.+-|-..... +-|+.|.....+.....+.......+.+.
T Consensus 138 ~-~f~~i~E--~~L~~--d--------~~~~sk~v~VGwGrkeTq-frgs~gr~~~~~~~~~ek~~~~~~~~~~~----- 198 (1265)
T KOG1920|consen 138 K-DFEPIAE--KPLDA--D--------DERKSKFVNVGWGRKETQ-FRGSEGRQAARQKIEKEKALEQIEQDDHK----- 198 (1265)
T ss_pred c-cccchhc--ccccc--c--------cccccccceeccccccee-eecchhhhcccccccccccccchhhccCC-----
Confidence 2 1111100 00000 0 000112222333221111 11111222222211101101111112221
Q ss_pred cccCCCcceeeeEEEEcCCCCEEEEee-----CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644 297 DLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
++++|--||+++|+.. ....|++||-+ + .+..+-....+.-.+++|.|. +..+++
T Consensus 199 -----------~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPs-------gs~iA~ 258 (1265)
T KOG1920|consen 199 -----------TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPS-------GSLIAA 258 (1265)
T ss_pred -----------ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCC-------CCeEee
Confidence 4799999999998732 23789999977 3 343333333444457888886 336666
Q ss_pred ecccCc----ccCCCCCcccc----cccc-ccCeEEEEEccCCCeEEE---ecCCc-eEEEe
Q 014644 372 GLYRQA----HENSSSGHHEL----SYNL-SSKLLHLAWHPTTNLIAC---ANGNS-LFFHY 420 (421)
Q Consensus 372 g~~d~~----~iw~~~~~~~~----~~~~-~~~v~~~~~spd~~~la~---~~~~~-~~i~~ 420 (421)
-..++. .++...++... .... ...|..++|+.++.+||+ ...+. +.+|.
T Consensus 259 iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred eeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 544433 34422222111 1111 233899999999999998 44444 88885
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00013 Score=68.10 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=84.4
Q ss_pred cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644 35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 114 (421)
Q Consensus 35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (421)
.|.--++ +..+.+++.|++-|.|.+++-..+.+.....
T Consensus 35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~---------------------------------------- 72 (726)
T KOG3621|consen 35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN---------------------------------------- 72 (726)
T ss_pred eEEEEEe--ecCCceEEEecccceEEEEecCchhhhcccc----------------------------------------
Confidence 3443444 5678999999999999999977765322211
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 193 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (421)
.+-.+.+..+..+++..++|+| ..|.|.++.++. ++.-...-+.+.. ..|...|+++
T Consensus 73 --------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~~d-~~~~~rVTal 130 (726)
T KOG3621|consen 73 --------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTPCD-KSHKCRVTAL 130 (726)
T ss_pred --------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecccc-ccCCceEEEE
Confidence 1223345566778888888888 999999998874 3222111111111 3478999999
Q ss_pred EEecCCCCeEEEEEcCCeEEEEECCc
Q 014644 194 EFHPIYCNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 194 ~~~p~~~~~l~s~~~d~~v~iwd~~~ 219 (421)
+|++++ ..+++|...|.|..-.+..
T Consensus 131 ~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 131 EWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Eecccc-cEEeecCCCceEEEEEech
Confidence 999999 9999999999999887776
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=3.4e-06 Score=77.43 Aligned_cols=199 Identities=11% Similarity=0.056 Sum_probs=122.8
Q ss_pred cceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE----cCC
Q 014644 139 FNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRG 210 (421)
Q Consensus 139 ~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~----~d~ 210 (421)
..+.|+++.-+ ...++.| .+|.|-+-.++..... ..+ .+++..+.++++|++-..+.||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~-------tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV-------TPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee-------cccccccccccccccccHHHHHhhhhhhcccC
Confidence 44666666543 3467778 8999999888733222 222 2678889999999997535666553 456
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeecc
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
.+.|||+.++-.... ....+..+......+++|..+.+++.+|.. ..+.++|++........+ ..
T Consensus 130 ~~~Iwdi~s~ltvPk------------e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nT 195 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPK------------ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NT 195 (783)
T ss_pred CccceecccccCCCc------------cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hh
Confidence 799999987521100 000111112345568899988889989866 899999998311111111 11
Q ss_pred CcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEe-cCCCCCceeEEecCCC----CccceeeecCCcccc
Q 014644 290 HLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS-HGVGSAGGITVEAGKN----ENRKPILQAAPRARR 363 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 363 (421)
..+ ..+..+| .+.|+++-. ||.|.+|| ...-+.....+..... .+..++++|.++|.
T Consensus 196 k~v---------------qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl- 258 (783)
T KOG1008|consen 196 KYV---------------QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL- 258 (783)
T ss_pred hhc---------------ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch-
Confidence 111 3567778 677877666 99999999 4433333333333333 37888999987554
Q ss_pred cccceeeeecccCc--ccC
Q 014644 364 SSLSNLTRGLYRQA--HEN 380 (421)
Q Consensus 364 ~~~~~l~~g~~d~~--~iw 380 (421)
|++-.+|.. +++
T Consensus 259 -----la~l~RdS~tIrly 272 (783)
T KOG1008|consen 259 -----LAVLSRDSITIRLY 272 (783)
T ss_pred -----hhhhccCcceEEEe
Confidence 555555544 554
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.97 E-value=0.0085 Score=51.17 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=93.1
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 191 (421)
...+..++..++ +.+..+ .. .+.+...... ++..++.+ .++.|..+|..++....+...... ... ....
T Consensus 45 ~~~l~~~d~~tG---~~~W~~-~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~-~~~~ 114 (238)
T PF13360_consen 45 DGNLYALDAKTG---KVLWRF-DL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS---PPA-GVRS 114 (238)
T ss_dssp TSEEEEEETTTS---EEEEEE-EC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS---CTC-STB-
T ss_pred CCEEEEEECCCC---CEEEEe-ec-cccccceeee-cccccccccceeeeEecccCCcceeeeeccccc---ccc-cccc
Confidence 335566666555 444443 11 1221111122 34444554 788999999885555554221110 001 1112
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe-E
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-L 270 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i 270 (421)
.......+ ..++.+..++.|..+|+++|+...+... .. .+... .+.........+.+. ++..+++..++. +
T Consensus 115 ~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~---~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~ 186 (238)
T PF13360_consen 115 SSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPV--GE---PRGSS-PISSFSDINGSPVIS-DGRVYVSSGDGRVV 186 (238)
T ss_dssp -SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEES--ST---T-SS---EEEETTEEEEEECC-TTEEEEECCTSSEE
T ss_pred ccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeec--CC---CCCCc-ceeeecccccceEEE-CCEEEEEcCCCeEE
Confidence 22233335 7788888899999999999875421100 00 00000 000000111233333 454444444554 5
Q ss_pred EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+ |+.+ ++.+.... ... ......+++..|+.++.++.|..||+.++
T Consensus 187 ~~-d~~t-g~~~w~~~-~~~-----------------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 187 AV-DLAT-GEKLWSKP-ISG-----------------IYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EE-ETTT-TEEEEEEC-SS------------------ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred EE-ECCC-CCEEEEec-CCC-----------------ccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 55 9986 66443222 111 11224567788888889999999999998
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00024 Score=66.49 Aligned_cols=123 Identities=9% Similarity=0.055 Sum_probs=85.8
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
+...|.--+++..+ .+++.|+.-|.+++|+-..+... . ... .+..+.+..+..+++..++|+|
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~----~-~~~-----------~~~~~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR----K-LKN-----------EGATGITCVRSVSSVEYLVAAG 94 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhh----c-ccc-----------cCccceEEEEEecchhHhhhhh
Confidence 34455555677777 89999999999999997765432 1 111 0124567788899999888988
Q ss_pred cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
++ |.|.++.+......-..+..+.... +.. .|++++|+++++.+++|...|.|..-.+..
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~-------~~~---rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKS-------HKC---RVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEeehhhccCCCcceeecccccc-------CCc---eEEEEEecccccEEeecCCCceEEEEEech
Confidence 88 9999999876333222222222110 011 238999999999999999999999888876
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=9.5e-06 Score=77.31 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=110.3
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 206 (421)
+..+++ ..|....+|++|+-+.+.|+.| ..|.|+++++.+ +.... ....|..+|+-+.-+.+|...|.++
T Consensus 1092 r~w~~f-rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~-------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1092 RSWRSF-RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEE-------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred ccchhh-hccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccc-------cccccccccccccccCCcceeeeec
Confidence 455667 7888999999999999999999 999999999994 43332 2278999999999999994444444
Q ss_pred EcCC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE
Q 014644 207 SSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT 284 (421)
Q Consensus 207 ~~d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~ 284 (421)
+... ...+|++..- ....+.|.. -.++.|+..-..-+.|+. ....+||+.+ +.++.+
T Consensus 1163 s~S~PlsaLW~~~s~---~~~~Hsf~e-----------------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT-~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST---GGPRHSFDE-----------------DKAVKFSNSLQFRALGTEADDALLYDVQT-CSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc---cCccccccc-----------------cceeehhhhHHHHHhcccccceEEEeccc-CcHHHH
Confidence 4443 5678998762 112233333 467888876554455555 7899999998 666555
Q ss_pred E-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 285 F-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+ .+.-... |++ ..+.|+|+..+++- ||. +||++..
T Consensus 1222 ylt~~~~~~------y~~------n~a~FsP~D~LIln---dGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1222 YLTDTVTSS------YSN------NLAHFSPCDTLILN---DGV--LWDVRIP 1257 (1516)
T ss_pred hcCcchhhh------hhc------cccccCCCcceEee---Cce--eeeeccH
Confidence 3 2221111 111 46789999887763 443 6998864
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00041 Score=60.56 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=68.0
Q ss_pred cccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCE
Q 014644 242 FFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLH 318 (421)
Q Consensus 242 ~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~ 318 (421)
++..+...|..++|+|..+ ++..++- ..|+|.|+++ ..++..+..+... ++++|.-| ..+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~~----------------wSC~wDlde~h~ 250 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQI----------------WSCCWDLDERHV 250 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCCc----------------eeeeeccCCcce
Confidence 5666778899999999877 4555554 8999999997 7888888877543 79999986 456
Q ss_pred EEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 319 FATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 319 l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
|+.|-..|.|.|||++..+.....+.+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhh
Confidence 888889999999999976554444443
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.0047 Score=57.34 Aligned_cols=216 Identities=11% Similarity=0.035 Sum_probs=110.2
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
......+.++|+|++++.+.||.-.|+... ..+.. ..+.-..++|.+. +.+|+-....+|.++.-
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSR--NRYAVLESSSTIKIYKN 96 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TS--SEEEEE-TTS-EEEEET
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecC--ccEEEEECCCeEEEEEc
Confidence 334789999999999999988888888844 22211 1244567889995 45777777889999632
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
-+.... +.+.. ...+..+-. |.+|+..+++.|.+||+.+ ++.+.++.... +
T Consensus 97 ~~~~~~----k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v----- 147 (443)
T PF04053_consen 97 FKNEVV----KSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V----- 147 (443)
T ss_dssp TEE-TT-----------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E--------
T ss_pred Cccccc----eEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C-----
Confidence 222211 22222 122344432 8888877767899999987 88888876543 1
Q ss_pred ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC--------CC--ceeEEecCCCCccceeeecCCcccccccc
Q 014644 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SA--GGITVEAGKNENRKPILQAAPRARRSSLS 367 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (421)
..+.|+++|.+++..+.+ .++|++.+.. +. ....+..-...|.+.+|..+ -
T Consensus 148 ----------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--------~ 208 (443)
T PF04053_consen 148 ----------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--------C 208 (443)
T ss_dssp ----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--------E
T ss_pred ----------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--------E
Confidence 589999999999888754 6777665422 00 22333333566777777655 1
Q ss_pred eeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644 368 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 418 (421)
Q Consensus 368 ~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i 418 (421)
++.+... ..+.+- ++......-...++.-+...|..+.|.+.. +.++..
T Consensus 209 fiYtT~~-~lkYl~-~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 209 FIYTTSN-HLKYLV-NGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp EEEE-TT-EEEEEE-TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred EEEEcCC-eEEEEE-cCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 3333333 222221 112222222244555666666555555554 334443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.91 E-value=0.0056 Score=61.29 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=115.1
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 113 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 113 (421)
+.|.++.| ..+.+.+..+..+|.|.+-|.++..+..... ....|.+++|++...- ++.......-.+.+-.++..
T Consensus 69 ~~i~s~~f--l~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~-l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQF--LADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEEL-LALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEE--ecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcE-EEEEeCCcEEEEEeccccch
Confidence 57889999 4777888888889999999988876544422 3444555555543322 22221111111111111100
Q ss_pred c-------------ceeE-Eee-cccceeeeee-----ee-----cC--CCCcceEEEeecCCCCEEEEE-----cC-Cc
Q 014644 114 M-------------ATKI-ANV-GNSVHARCQK-----VY-----PH--AHDFNINSISNNSDCETFVSA-----DD-LR 160 (421)
Q Consensus 114 ~-------------~~~~-~~~-~~~~~~~~~~-----~~-----~~--~h~~~v~~l~~~~~~~~l~s~-----~d-~~ 160 (421)
. .+.+ |-- ++...+.+.+ .. .. .-.+.=..+.|--||+++|++ .+ +.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0 0111 111 0111111100 00 00 001112458999999999982 34 89
Q ss_pred EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccC
Q 014644 161 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESH 237 (421)
Q Consensus 161 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~ 237 (421)
|++||-+ +.+-.+- ....+-=.+++|-|.| ..+++-. .|+.|.++.-+.-+ .....-.+..
T Consensus 224 irV~drE--g~Lns~s-------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~----- 287 (1265)
T KOG1920|consen 224 IRVYDRE--GALNSTS-------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPL----- 287 (1265)
T ss_pred EEEeccc--chhhccc-------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcc-ccccccCCcc-----
Confidence 9999987 3322211 1122334578999998 7877754 45678888744321 1110011111
Q ss_pred CCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCC
Q 014644 238 GSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRM 277 (421)
Q Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~ 277 (421)
...++..++|+.++..|+.. .. ..|++|-+.+
T Consensus 288 --------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 288 --------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred --------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 12348999999999999873 33 4599999864
No 331
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.003 Score=53.93 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=82.4
Q ss_pred cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccccc
Q 014644 157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 236 (421)
Q Consensus 157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~ 236 (421)
++++|..||..++....+ ..++ ..... ..+. ..+++ ..+++++.++.|..||..+++.. +.. ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~-~~~~----~~~~~-~~~~-~~~~~-~~v~~~~~~~~l~~~d~~tG~~~------W~~-~~- 64 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWS-YDLG----PGIGG-PVAT-AVPDG-GRVYVASGDGNLYALDAKTGKVL------WRF-DL- 64 (238)
T ss_dssp -TSEEEEEETTTTEEEEE-EECS----SSCSS-EEET-EEEET-TEEEEEETTSEEEEEETTTSEEE------EEE-EC-
T ss_pred CCCEEEEEECCCCCEEEE-EECC----CCCCC-ccce-EEEeC-CEEEEEcCCCEEEEEECCCCCEE------EEe-ec-
Confidence 468899999974444443 3221 11111 1211 22344 67777789999999999988743 221 00
Q ss_pred CCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCC
Q 014644 237 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGD 315 (421)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 315 (421)
...+.......++..++...++.++.+|..+ ++.+... ........ . . .......+
T Consensus 65 ----------~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~-~---------~--~~~~~~~~ 121 (238)
T PF13360_consen 65 ----------PGPISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG-V---------R--SSSSPAVD 121 (238)
T ss_dssp ----------SSCGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS-T---------B----SEEEEE
T ss_pred ----------cccccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc-c---------c--cccCceEe
Confidence 0111111222344444444458999999886 8877763 33211110 0 0 12222224
Q ss_pred CCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 316 GLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 316 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
+..++.+..++.|+.+|+.++ ...-....
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~ 150 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTG-KLLWKYPV 150 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTT-EEEEEEES
T ss_pred cCEEEEEeccCcEEEEecCCC-cEEEEeec
Confidence 778888888999999999998 44434433
No 332
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.00039 Score=65.77 Aligned_cols=154 Identities=17% Similarity=0.167 Sum_probs=105.3
Q ss_pred cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-----------CCeEEEEE
Q 014644 139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----------CNLLAYSS 207 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~l~s~~ 207 (421)
..-.++.|+|.| +||.|....|.+-|.. .-+.++.+ +-|+..|+.+.|.|-. .-+|+++.
T Consensus 16 sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iqsi-------e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQSI-------ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred ccccccccCccc-eEEEecCceEEEEehh-hhhhhhcc-------ccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 346788999877 7788877788888987 55666554 6788999999998742 12567777
Q ss_pred cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC---CCCE-EEEecC-CeEEEEECCCCCcce
Q 014644 208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN---DGQH-LLSRDY-MNLKLWDIRMDSTPV 282 (421)
Q Consensus 208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~---~~~~-l~~~~~-~~i~i~d~~~~~~~~ 282 (421)
..|.|.+||...+... ..+.. +..++..++|-+ +.+. |++-.. ..+.+|+..+ |+.+
T Consensus 87 ~~GrIil~d~~~~s~~----~~l~~-------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~ 148 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVI----NWLSH-------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKF 148 (1062)
T ss_pred ccCcEEEEEehhhhhh----hhhcC-------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccC-Ccee
Confidence 8899999999886543 22333 366778888876 4534 443333 8999999987 7776
Q ss_pred eEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecC
Q 014644 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~ 334 (421)
..+....... .++.+.| |.+.+..-+..|.+.+-+.-
T Consensus 149 Wk~~ys~~iL---------------s~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 149 WKYDYSHEIL---------------SCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred eccccCCcce---------------eeeeeCCCCcceEEEEccCceEEEEecc
Confidence 6654433321 4577777 56666666666776666543
No 333
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00016 Score=66.69 Aligned_cols=113 Identities=18% Similarity=0.323 Sum_probs=77.4
Q ss_pred eeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccc
Q 014644 11 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 90 (421)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (421)
|.|..+|.+ .++.-. ..-...|.-+.| +|.-.++|++..+|.|.+..+.-.
T Consensus 2 ~pf~~qf~s--~~~~~~--~~l~~~i~~~ew--nP~~dLiA~~t~~gelli~R~n~q----------------------- 52 (665)
T KOG4640|consen 2 YPFKHQFES--NETNGV--MSLPINIKRIEW--NPKMDLIATRTEKGELLIHRLNWQ----------------------- 52 (665)
T ss_pred CCccccccc--chhhhh--hccccceEEEEE--cCccchhheeccCCcEEEEEeccc-----------------------
Confidence 455556555 222222 233567889999 678889999999999999987632
Q ss_pred cceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceE-EEeecCCCCEEEEE-cCCcEEEEeCCC
Q 014644 91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSA-DDLRINLWNLEI 168 (421)
Q Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~-~d~~i~lwd~~~ 168 (421)
|+|... -|...++ +++|.|||+.||.| .||+|++.|+.+
T Consensus 53 --------------------------Rlwtip-------------~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 53 --------------------------RLWTIP-------------IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred --------------------------eeEecc-------------CCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 344432 2344454 99999999999999 999999999995
Q ss_pred CceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644 169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPI 198 (421)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 198 (421)
+...... ...-..+|.++-|.|.
T Consensus 94 ~~~l~~~-------~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 94 GGRLVSF-------LFSVETDISKGIWDRI 116 (665)
T ss_pred CCceecc-------ccccccchheeecccc
Confidence 5443321 1223466777777753
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.78 E-value=0.018 Score=48.91 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=84.3
Q ss_pred cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCcee-----eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
+....+++..++.++++. .++.+.+.++...... ++.+.+. ....+...+..++|+|.+ +.|+.+-...-.
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~--~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~ 141 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG--FPNKGNKGFEGLAYDPKT-NRLFVAKERKPK 141 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTT-TEEEEEEESSSE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc--cccCCCcceEEEEEcCCC-CEEEEEeCCCCh
Confidence 346678888888888888 8999999988432221 1222111 112345668999999998 667667766666
Q ss_pred EEEECCc--cc--ccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644 213 RLVDMRQ--SA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFK 286 (421)
Q Consensus 213 ~iwd~~~--~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~~~~ 286 (421)
++|.++. .. ........+.. ....-..+.+++++|.. ++++.+.. ..|..+|.. ++++..+.
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~ 209 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDD----------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLS 209 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE
T ss_pred hhEEEccccCccceeecccccccc----------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEE
Confidence 6776653 11 00000000110 01112357899999964 44444444 889999953 77777665
Q ss_pred eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644 287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331 (421)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw 331 (421)
.......... .+.-.-.++|.++|+ |+..++-+..+++
T Consensus 210 L~~g~~gl~~------~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSK------DIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred eCCcccCccc------ccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 5442110000 000015899999986 5556676766655
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0024 Score=61.33 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=59.6
Q ss_pred ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644 140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 218 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~ 218 (421)
.+++++|+|..-.|+.| .-|.+.+|... ..+..... ..|+.+|..+.|+|+| ..++++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~e~htv~-------~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTN-TTETHTVV-------ETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecC-Cceeeeec-------cCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 46789999998889999 89999999987 33333322 6699999999999999 999999999999999876
Q ss_pred c
Q 014644 219 Q 219 (421)
Q Consensus 219 ~ 219 (421)
.
T Consensus 132 ~ 132 (1416)
T KOG3617|consen 132 V 132 (1416)
T ss_pred e
Confidence 4
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.013 Score=56.73 Aligned_cols=202 Identities=8% Similarity=-0.042 Sum_probs=118.5
Q ss_pred eecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC-eeEEEEecCCCCeEEEEEcCC-----eEEEEEC
Q 014644 145 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSSSRG-----FVRLVDM 217 (421)
Q Consensus 145 ~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~~d~-----~v~iwd~ 217 (421)
+|++.+..++.| .+|.|.+.+-. -+..+-+ ..+... |..+ +.-++..+|++.+.|+ .|++||+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~f-------qa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGF-------QAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehh-------eecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecc
Confidence 367778889999 99998887754 3332222 334333 4444 3333336788877664 5899999
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCC-CcceeEEeeccCccccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKL 295 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~ 295 (421)
..-..... ...+..|..-+ ..++....++..++.+.+-+.+|.|= +|.|.++.-+-. .+-.+.-..|.+
T Consensus 100 ek~~~n~s-P~c~~~~ri~~---~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----- 170 (933)
T KOG2114|consen 100 EKVDKNNS-PQCLYEHRIFT---IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----- 170 (933)
T ss_pred cccCCCCC-cceeeeeeeec---cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----
Confidence 76432110 01111111000 01122256889999999988899984 499988853210 011111111211
Q ss_pred ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeeccc
Q 014644 296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 375 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d 375 (421)
.++ |+++++-.+++.++-...-..|.+|.+.........+..|..+.++..+++. ...+++++..
T Consensus 171 -----~~p---ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-------t~qfIca~~e 235 (933)
T KOG2114|consen 171 -----KEP---ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-------TYQFICAGSE 235 (933)
T ss_pred -----CCC---ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCC-------CccEEEecCc
Confidence 112 2789998888874444445688999998554346668888888888888876 2346666655
Q ss_pred CcccC
Q 014644 376 QAHEN 380 (421)
Q Consensus 376 ~~~iw 380 (421)
...++
T Consensus 236 ~l~fY 240 (933)
T KOG2114|consen 236 FLYFY 240 (933)
T ss_pred eEEEE
Confidence 55555
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.027 Score=52.23 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=58.5
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS 279 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~ 279 (421)
..++.++.+|.+..+|+.+++.. |.. . ......+.. ++..+..++ ++.+..+|..+ +
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~------------~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G 314 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIV------WKR-E------------YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G 314 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEE------Eee-c------------CCCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence 46777788999999999988633 322 0 001111222 344554444 49999999976 6
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 337 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~ 337 (421)
+.+-......... . .+... .+..|+.++.+|.|+..|..+++
T Consensus 315 ~~~W~~~~~~~~~--~------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 315 VELWSQSDLLHRL--L------------TAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cEEEcccccCCCc--c------------cCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 6543322111100 0 12222 24567889999999999999883
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.0032 Score=58.44 Aligned_cols=139 Identities=11% Similarity=0.142 Sum_probs=75.6
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
......+.++|+| +.++. +.||.-.++.....+. +. .+......|.+.+++.+.-.
T Consensus 32 ~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~-----k~-----------------~G~g~~~vw~~~n~yAv~~~ 87 (443)
T PF04053_consen 32 EIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRN-----KA-----------------FGSGLSFVWSSRNRYAVLES 87 (443)
T ss_dssp SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEE-----EE-----------------EEE-SEEEE-TSSEEEEE-T
T ss_pred CcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCcc-----cc-----------------cCceeEEEEecCccEEEEEC
Confidence 3457899999999 77766 6688888887433221 10 34567888999666544444
Q ss_pred CCeEEEE-ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644 267 YMNLKLW-DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345 (421)
Q Consensus 267 ~~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 345 (421)
.++|.|+ ++. ......+...... ..+ |. |.+|+..+. +.|.+||+.++ .....+.
T Consensus 88 ~~~I~I~kn~~--~~~~k~i~~~~~~----------------~~I-f~--G~LL~~~~~-~~i~~yDw~~~-~~i~~i~- 143 (443)
T PF04053_consen 88 SSTIKIYKNFK--NEVVKSIKLPFSV----------------EKI-FG--GNLLGVKSS-DFICFYDWETG-KLIRRID- 143 (443)
T ss_dssp TS-EEEEETTE--E-TT-----SS-E----------------EEE-E---SSSEEEEET-TEEEEE-TTT---EEEEES-
T ss_pred CCeEEEEEcCc--cccceEEcCCccc----------------ceE-Ec--CcEEEEECC-CCEEEEEhhHc-ceeeEEe-
Confidence 5889996 332 3333334332211 122 22 777776665 48999999987 2221111
Q ss_pred CCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
-..|..+.|+++++++|..+.+.++|++
T Consensus 144 -----------------------------------------------v~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 144 -----------------------------------------------VSAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -----------------------------------------------S-E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred -----------------------------------------------cCCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 1237789999999999999999999874
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.57 E-value=0.066 Score=49.68 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC--CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644 151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 227 (421)
Q Consensus 151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 227 (421)
..++.+ .++.|..+|.+++....+.- ..... ..+...+ ... + ..++.++.++.+..+|..+++..
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~---- 228 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLI---- 228 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhh----
Confidence 355556 88999999998554444331 11000 0011111 111 2 35666788999999999887643
Q ss_pred hhhccccccCCCcccccccccceeEEEEcC---CCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcc
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
|......+..... ......+.-+| ++..++.+.++.+..+|..+ ++.+-.......
T Consensus 229 --W~~~~~~~~~~~~----~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~-------------- 287 (394)
T PRK11138 229 --WQQRISQPTGATE----IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV-------------- 287 (394)
T ss_pred --heeccccCCCccc----hhcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc--------------
Confidence 2210000000000 00001111122 34444444458999999986 765544321110
Q ss_pred eeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 337 (421)
Q Consensus 305 ~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~ 337 (421)
..+.. .+..|+.++.+|.++.+|..++.
T Consensus 288 ---~~~~~--~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 288 ---NDFAV--DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred ---cCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 11222 45677888889999999998873
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.47 E-value=0.026 Score=55.69 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=85.5
Q ss_pred CeEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--------CCEEEEecCCeEE
Q 014644 201 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------GQHLLSRDYMNLK 271 (421)
Q Consensus 201 ~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~~~~~~~i~ 271 (421)
++|+.. .....|+-.|+..|+.+ ..|..|. ..+|. .+.|+ ...++.-++..+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~--~~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------Cccee--EecccccccccCCCceEEEECCCceE
Confidence 444443 34577888899988765 5566531 11233 33332 2233333558899
Q ss_pred EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcc
Q 014644 272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351 (421)
Q Consensus 272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 351 (421)
.||.|..+..+..-..+... ...- ..+++-+.+| +||+|+.+|.||+||- .+ ..
T Consensus 556 riDpR~~~~k~v~~~~k~Y~---------~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g-~~------------ 609 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQYS---------SKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LG-KR------------ 609 (794)
T ss_pred EeccCCCCCceeeccccccc---------cCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cc-hh------------
Confidence 99999754322211222211 1111 1566666666 6899999999999982 22 10
Q ss_pred ceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 352 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
+- ..+-+...+|..+..+.||++|++.+...|.++.
T Consensus 610 AK---------------------------------T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 610 AK---------------------------------TALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred hh---------------------------------hcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 00 1111346889999999999999999988887765
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.001 Score=61.70 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=61.7
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-EEEEecCCCCeEEEEEcCCeEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
...|.-+.|+|.-.++|.+ .+|.|-+..++ -.+ +-++ +-+...++ +++|.||| +.|+.|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwti-------p~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTI-------PIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEec-------cCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 3457788999999999999 99999999887 333 3332 43445555 99999999 999999999999999
Q ss_pred ECCccccc
Q 014644 216 DMRQSALC 223 (421)
Q Consensus 216 d~~~~~~~ 223 (421)
|+.++...
T Consensus 90 Dve~~~~l 97 (665)
T KOG4640|consen 90 DVEKGGRL 97 (665)
T ss_pred EccCCCce
Confidence 99988654
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.38 E-value=0.0005 Score=38.95 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=32.0
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEe
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 165 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd 165 (421)
++...+ ..|...|.++.|.+++..++++ .|+.+++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455566 6888999999999999999998 999999996
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.37 E-value=0.056 Score=49.26 Aligned_cols=238 Identities=13% Similarity=0.089 Sum_probs=119.4
Q ss_pred cCCCCEEEEE----------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 147 NSDCETFVSA----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 147 ~~~~~~l~s~----------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
|||+++++.. ..+.+.+||++ .++...+ ......+....|+|+| +.++... ++.|.+++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~~~~l--------~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~ 69 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGEITPL--------TPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRD 69 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTEEEES--------S-EETTBSEEEE-SSS-TEEEEEE-TTEEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCceEEC--------cCCccccccceeecCC-CeeEEEe-cCceEEEE
Confidence 5788887763 14568899998 4444332 2225678899999999 8888765 67899998
Q ss_pred CCcccccccchhhhccccccCCCccccccc---------ccceeEEEEcCCCCEEEEe--cCCe---EEEEECCCCCc--
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEI---------IASISDIKFANDGQHLLSR--DYMN---LKLWDIRMDST-- 280 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~--~~~~---i~i~d~~~~~~-- 280 (421)
+..+... ++-.. + ....+.+- -+.-..+-|||||++|+.. ++.. +.+-+......
T Consensus 70 ~~~~~~~----~lT~d---g--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~y 140 (353)
T PF00930_consen 70 LATGQET----QLTTD---G--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQY 140 (353)
T ss_dssp STTSEEE----ESES-------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS
T ss_pred CCCCCeE----Eeccc---c--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccC
Confidence 8766322 11110 0 00000000 1234678999999999865 2233 33333332111
Q ss_pred -ceeEEee-----------------ccCcccccccc---cCCCcceeeeEEEEcCCCCEEEE--eeCC---CeEEEEecC
Q 014644 281 -PVATFKI-----------------HEHLRPKLCDL---YNNDSIFDKFECSVSGDGLHFAT--GSYS---NLLRIFSHG 334 (421)
Q Consensus 281 -~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~sp~~~~l~~--~s~d---g~i~iwd~~ 334 (421)
.+..++- .......+... ...+.. +..+.|.++++.|+. .+.+ ..+.+.|..
T Consensus 141 p~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y--l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 141 PEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY--LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp -EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE--EEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred CcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC--cccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 1222211 11111011111 122332 378999999884433 2333 247778887
Q ss_pred CCCCceeEEecCCCCcc---ceeee-cCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEE-EEEccCC
Q 014644 335 VGSAGGITVEAGKNENR---KPILQ-AAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLH-LAWHPTT 405 (421)
Q Consensus 335 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~-~~~spd~ 405 (421)
++.............+. ...+. ++ + ..+|.....+|- .|+ ..++....+....-.|.. +.|.+++
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~--~----~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~ 292 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPD--G----NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDN 292 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTT--S----SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTS
T ss_pred CCceeEEEEecCCcceeeecccccccCC--C----CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCC
Confidence 76443333333444432 23333 22 1 224444447776 777 233333333344455644 7889998
Q ss_pred CeEEEec
Q 014644 406 NLIACAN 412 (421)
Q Consensus 406 ~~la~~~ 412 (421)
+.|...+
T Consensus 293 ~~iyf~a 299 (353)
T PF00930_consen 293 NRIYFTA 299 (353)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 8776443
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.34 E-value=0.026 Score=40.67 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=40.0
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe---cCCCCeEEEEEcCCeEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~s~~~d~~v~ 213 (421)
.+.|.+|.-... ..++.+ .+|+|-+|+-. .+.++.. . ...+.++.+. -+|...|++|=.+|.|-
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiK--------S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIK--------S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeec--------c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 345666666655 457777 99999999865 4555442 1 2235555443 34445788888888764
No 345
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.32 E-value=0.022 Score=55.17 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=92.1
Q ss_pred cceEEEeecCCCCEEEEE-c------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-C
Q 014644 139 FNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G 210 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~ 210 (421)
..+.+.+++|+|+.++.. . |..-.||-...++...... .+ .......|+|+| ..|++.+.. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g--~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EG--HSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cC--CCCCCceECCCC-CceEEEecCcc
Confidence 457888999999988864 2 4444455433223332221 22 237788999998 767666533 2
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEE---EECCCCCcceeEEee
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL---WDIRMDSTPVATFKI 287 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i---~d~~~~~~~~~~~~~ 287 (421)
.+++.+-...... ..... ....... .....|..+.|||||..++.-..+.|++ -... .+. ..+..
T Consensus 420 ~~~v~~~~~~gql----~~~~v--d~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~--~~l~~ 487 (591)
T PRK13616 420 VVRVIRDPATGQL----ARTPV--DASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ--YALTN 487 (591)
T ss_pred eEEEeccCCCceE----EEEec--cCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc--eeecc
Confidence 2223222111000 00000 0000000 1145799999999999998765677776 3322 233 22211
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--CCCccceeeec
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--KNENRKPILQA 357 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 357 (421)
.......+ .+. +.++.|.+++.++ ++..++.-.+|.+.-.+.....+.+. ..++..++-.+
T Consensus 488 ~~~l~~~l-----~~~---~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 488 PREVGPGL-----GDT---AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred cEEeeccc-----CCc---cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 00000000 000 1578999998855 55555555556555433333222332 34444444443
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0077 Score=59.29 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=83.2
Q ss_pred eEEeecccceeeeeeeecCCCCc-ceEEEeecC-----CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644 117 KIANVGNSVHARCQKVYPHAHDF-NINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~-----~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (421)
.--|++.+ +.+..+ ..|.. +|..++-.. +....+.| .+..+..||.+..+..+-... .........
T Consensus 507 y~mDLe~G---KVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~---~k~Y~~~~~ 579 (794)
T PF08553_consen 507 YKMDLERG---KVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ---SKQYSSKNN 579 (794)
T ss_pred EEEecCCC---cEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc---ccccccCCC
Confidence 33344444 556665 33433 254443321 13345667 899999999986542211110 111223455
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 269 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 269 (421)
..|++-+.+| +||.|+.+|.||+||-. +... + ..+++...+|..|..+.||++|++.+...
T Consensus 580 Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~A----K------------T~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 580 FSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRA----K------------TALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred ceEEEecCCc--eEEEEeCCCcEEeeccc-chhh----h------------hcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 6777777776 89999999999999933 2211 1 11233467999999999999999888878
Q ss_pred EEEEEC
Q 014644 270 LKLWDI 275 (421)
Q Consensus 270 i~i~d~ 275 (421)
|.|++.
T Consensus 641 LlLi~t 646 (794)
T PF08553_consen 641 LLLIDT 646 (794)
T ss_pred EEEEEE
Confidence 888886
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.06 Score=51.41 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.7
Q ss_pred eEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644 308 FECSVSGDGLHFATGS-YSNLLRIFSHGVG 336 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~ 336 (421)
..+.++|||+++++++ .+.++.|.|+.+.
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 6899999999987665 4899999999875
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.095 Score=44.40 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=65.3
Q ss_pred cceEEEeecCCCC-EEEEE-cCCc-EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-----C
Q 014644 139 FNINSISNNSDCE-TFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----G 210 (421)
Q Consensus 139 ~~v~~l~~~~~~~-~l~s~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----~ 210 (421)
..-..++++|... -++.+ .-|+ ..++|.+...+.+.....+...+.+|. .|+||| .+|+..-.| |
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG-~~LYATEndfd~~rG 140 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDG-RLLYATENDFDPNRG 140 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCC-cEEEeecCCCCCCCc
Confidence 3445678888644 44456 5554 578898844444433322323344453 699999 887766543 7
Q ss_pred eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
.|-+||.+.+-.. +-.|.. |.-....+.+.+||+.++.+.
T Consensus 141 ViGvYd~r~~fqr---vgE~~t-------------~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 141 VIGVYDAREGFQR---VGEFST-------------HGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred eEEEEecccccce---eccccc-------------CCcCcceeEEecCCcEEEEeC
Confidence 8999999854211 222333 344567899999999998765
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.078 Score=47.64 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=67.7
Q ss_pred CCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644 136 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
...++|++++-- +..|+.+..+.|.+|++........... ......+.++... + ++++.|.....+.++
T Consensus 86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~------~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAF------YDSPFYITSLSVF--K-NYILVGDAMKSVSLL 154 (321)
T ss_dssp EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEE------E-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhhe------ecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence 346678888766 3457778778999999984441333221 1112245555444 5 688889888888877
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECC
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR 276 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~ 276 (421)
..+..... ...+.. ......+.++.|-++++.++.++. |.+.++...
T Consensus 155 ~~~~~~~~---l~~va~-----------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK---LILVAR-----------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE----EEEEEE-----------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE---EEEEEe-----------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 54431100 011111 001346888888877777777766 999999875
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.21 E-value=0.13 Score=45.03 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=117.2
Q ss_pred CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644 149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 227 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 227 (421)
.++.|+.| .+| +.+++........+.. +...|..+...|+- +.++.-+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccc
Confidence 57788888 888 9999984233333332 22349999999987 5555544 5999999998754321100
Q ss_pred hhhccccccCCCcccccccccceeEEE---EcCCCCEEEEecCCeEEEEECCCC---C-cceeEEeeccCcccccccccC
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLYN 300 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~~~~~~i~i~d~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 300 (421)
.... .........+. ....+...+ -......|+.+....|.+|.+... . ...+.+.....+
T Consensus 74 -~~~~-~~~~~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~--------- 141 (275)
T PF00780_consen 74 -PLAF-PKSRSLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP--------- 141 (275)
T ss_pred -cccc-ccccccccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc---------
Confidence 0000 00000000000 012233333 222345666666578999888642 1 344555554433
Q ss_pred CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC---------ccceeeecCCcccccccceeee
Q 014644 301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE---------NRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
..++|. +..|+.|..+ ...+.|+.++.. ...+...... ...+....-. ...+|.+
T Consensus 142 -------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~Ll~ 205 (275)
T PF00780_consen 142 -------SSIAFL--GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-----DNEFLLC 205 (275)
T ss_pred -------EEEEEe--CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-----CceEEEE
Confidence 588887 5567777654 477789886632 2222111110 1111111100 0124444
Q ss_pred ecccCcccCCCCCccc-cccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644 372 GLYRQAHENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 421 (421)
Q Consensus 372 g~~d~~~iw~~~~~~~-~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~ 421 (421)
-.+-|.-+-..|+... ..+.....+.++++ ..++|.+...+.+-||+.
T Consensus 206 ~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 206 YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred ecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 3222211212333222 23344556666666 356888888888888863
No 351
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.20 E-value=0.16 Score=45.70 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=50.2
Q ss_pred cCCCeeEEEEecCCCCeEEEEEc---CC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSS---RG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 261 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~---d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (421)
-...+..+.|+|..+.+|+.|-+ +. .-|||-+++..... +.+..| . ....+.-=-|.|||..
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~--~---------~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRR--M---------EGESVGHEFWVPDGST 251 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS--------------TTEEEEEEEE-TTSS-
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecC--C---------CCcccccccccCCCCE
Confidence 34567788999988677777653 22 13666554422111 111110 0 0234555678999997
Q ss_pred EEEe-----c-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644 262 LLSR-----D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 323 (421)
Q Consensus 262 l~~~-----~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s 323 (421)
|.-- . +..|.-+|+.+ ++......... . ..+--++||++++.=+
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~-~----------------~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPW-C----------------SHFMSSPDGKLFVGDG 301 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT---EEEEEEE-S-E----------------EEEEE-TTSSEEEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCC-CCceEEEeCCc-e----------------eeeEEcCCCCEEEecC
Confidence 7641 1 14566777775 43322222211 1 3566678998776433
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.033 Score=51.05 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=85.1
Q ss_pred eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--------EEEEecCCeEEEE
Q 014644 202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--------HLLSRDYMNLKLW 273 (421)
Q Consensus 202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~~~i~i~ 273 (421)
++.++.....|+-.|+..|+.+ ..|..| ..|+-+.+.|+.+ .|+.-++..|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444555567888888888765 556552 3377777777644 2333355889999
Q ss_pred ECCCCCc-ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccc
Q 014644 274 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 352 (421)
Q Consensus 274 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 352 (421)
|++-.+. .+..-++|+.... .- ..|++-..+ -+|++||.+|.|++||- .+.+....
T Consensus 410 DpRv~~~~kl~~~q~kqy~~k---------~n--Fsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTA---------- 466 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYSTK---------NN--FSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTA---------- 466 (644)
T ss_pred cccccCcceeeeeeccccccc---------cc--cceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhc----------
Confidence 9986444 2222333332210 00 034444444 47999999999999996 33111111
Q ss_pred eeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644 353 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418 (421)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i 418 (421)
+-+...+|..+..+.||++|++.+...|.+
T Consensus 467 ------------------------------------lPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 467 ------------------------------------LPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred ------------------------------------ccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 113457788888888888888887766554
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.09 E-value=0.0019 Score=36.39 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=23.5
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIFS 332 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iwd 332 (421)
.+++|.+++.++++++.|+.+++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 16 TSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eEEEECCCCCEEEEecCCCeEEEcC
Confidence 7899999999999999999999996
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.26 Score=45.81 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-CCCccceeeecC
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA 358 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~ 358 (421)
..++.||+|++||.-..+|.+.+...+-. .....+... ......+.|+.+
T Consensus 220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 220 IKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECC
Confidence 68999999999999999999999876544 223333222 334455566544
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.05 E-value=0.096 Score=47.07 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=80.5
Q ss_pred CcEEEEeCCCC---ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccc-ccccchhhhcccc
Q 014644 159 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 234 (421)
Q Consensus 159 ~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~h~ 234 (421)
|.|.++++... ...++.+ .-....++|++++-- ++ . |+. +.++.|.+|++...+ ... ...+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~~--~~~~~~-- 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLLK--KAFYDS-- 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccchh--hheecc--
Confidence 88999999842 1122222 013356889988766 33 4 443 346889999998765 221 011111
Q ss_pred ccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644 235 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 313 (421)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 313 (421)
...+.++... +.+++.|+. ..+.++.++.....+..+....... .++++.|-
T Consensus 129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 2244555444 669998876 7788876654344344443322221 23678887
Q ss_pred CCCCEEEEeeCCCeEEEEecCC
Q 014644 314 GDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 314 p~~~~l~~~s~dg~i~iwd~~~ 335 (421)
+++..++.+..+|.+.++....
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 6667899999999999998874
No 356
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.18 Score=43.11 Aligned_cols=176 Identities=9% Similarity=0.030 Sum_probs=102.9
Q ss_pred CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644 136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 214 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i 214 (421)
+-...|.++.|+|+.+.|++- +...-.||= .+.++.++.+. +.+. .....+.+..++ +++++--.++.+.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~GdlirtiP-----L~g~-~DpE~Ieyig~n-~fvi~dER~~~l~~ 154 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRTIP-----LTGF-SDPETIEYIGGN-QFVIVDERDRALYL 154 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEEec-----cccc-CChhHeEEecCC-EEEEEehhcceEEE
Confidence 445569999999999999987 554444443 33688888763 3333 334677888887 77777778899988
Q ss_pred EECCcccccccchh-hhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc--eeEEeeccC
Q 014644 215 VDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEH 290 (421)
Q Consensus 215 wd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~~ 290 (421)
+.+........... .+.. ......+.....++|+|..+.|..+-+ .-+.||.+...... +.....+..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L--------~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 155 FTVDADTTVISAKVQKIPL--------GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEEcCCccEEeccceEEec--------cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 87766532211000 1111 001111456789999998888877755 55666665421111 111111111
Q ss_pred cccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~ 335 (421)
.. .+ ..-++.++.|.+. +.+|+-+.+++.+.-.|...
T Consensus 227 ~~----~~----f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 DR----DL----FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cc----ce----EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 10 00 1124467888874 56666667777777777653
No 357
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.98 E-value=0.23 Score=43.83 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=133.6
Q ss_pred ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----------cCCcEEEEeCCCCceeeeeeecCCC-C
Q 014644 115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPS-N 182 (421)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----------~d~~i~lwd~~~~~~~~~~~~~~~~-~ 182 (421)
.+.+.|.++. +.+..+..+.. -.+..+|+++.+.++ ..-.|.+||.. +-....-+.+.+. .
T Consensus 18 rv~viD~d~~---k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADSG---KLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTTT---EEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B
T ss_pred eEEEEECCCC---cEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcch
Confidence 3555665554 44444422332 335678999988862 23469999998 4443333333221 1
Q ss_pred CCccCCCeeEEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644 183 MDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 183 ~~~~~~~v~~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
+. .......+.++.++ ++++... --.+|.+-|+..++.. ..+.. ..+..+--+++..
T Consensus 91 ~~-~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~ 149 (342)
T PF06433_consen 91 AQ-VVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRG 149 (342)
T ss_dssp ---BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTE
T ss_pred he-ecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCc
Confidence 11 11233456788888 7776654 3457889999887644 33332 1222232233444
Q ss_pred EEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-
Q 014644 261 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG- 339 (421)
Q Consensus 261 ~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~- 339 (421)
+...|.||.+.-..+...++...+...- ...++|.+| ..-++...+..++--+.+|.|+--|+......
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~--------F~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKV--------FDPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEE--------SSTTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccc--------cCCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccc
Confidence 6666777999988888667765332110 011233343 34556656556666889999999888765311
Q ss_pred eeEEecCC----------CCccceeeecCCcccccccceeeee-----cccCc-ccC--C-CCCccccccccccCeEEEE
Q 014644 340 GITVEAGK----------NENRKPILQAAPRARRSSLSNLTRG-----LYRQA-HEN--S-SSGHHELSYNLSSKLLHLA 400 (421)
Q Consensus 340 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g-----~~d~~-~iw--~-~~~~~~~~~~~~~~v~~~~ 400 (421)
...+..-. +....+++.+.. ++ +-.|.-. .+++. .|| + ........+.....+.+++
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~r---lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~ 295 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GR---LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIA 295 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTT-TE---EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEE
T ss_pred cCcccccCccccccCcCCcceeeeeecccc-Ce---EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEE
Confidence 11111111 112233443321 11 1111111 23334 677 1 1122222233455677899
Q ss_pred EccCCC-eEEEec--CCceEEEeC
Q 014644 401 WHPTTN-LIACAN--GNSLFFHYA 421 (421)
Q Consensus 401 ~spd~~-~la~~~--~~~~~i~~~ 421 (421)
.+-|.+ +|.+.+ ++.|++|++
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEET
T ss_pred EccCCCcEEEEEcCCCCeEEEEeC
Confidence 998865 554443 566999975
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.31 Score=45.29 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=31.6
Q ss_pred ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644 247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 288 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~ 288 (421)
.+++..+++||+|+++|.-.+ |.+.+....- .+....+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 358999999999999998766 8998888764 5555555544
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.0022 Score=61.61 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=78.1
Q ss_pred EEEEecCCCCeEEEEE----cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 192 SAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
-..|+|.. .+++.++ ..|+|.||- .+|++. +.... .-.+++++|+|..-.|+.|-.
T Consensus 20 i~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPq----r~Vt~--------------P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 20 ISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQ----RDVTY--------------PVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCC----ccccc--------------ceehhhhccChHHHHHhhccc
Confidence 34799998 7777776 458888884 344322 11111 224677999998878888866
Q ss_pred -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
|.+.+|.... .+.......|...+ ..+.|||+|..|+++..-|.+.+|....
T Consensus 80 ~g~~~v~~~~~-~e~htv~~th~a~i---------------~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 80 MGVSDVQKTNT-TETHTVVETHPAPI---------------QGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cceeEEEecCC-ceeeeeccCCCCCc---------------eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 9999999875 44444444555544 6899999999999999999999998773
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.2 Score=41.84 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=76.1
Q ss_pred EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEE
Q 014644 195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 273 (421)
Q Consensus 195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~ 273 (421)
..++...+++.|+..+.+.--|..+|...-+ .++. ..+.+-++- -|.+++.|.. |.+++.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We--~ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE--AILG----------------VRIECSAIV-VGDFVVLGCYSGGLYFL 78 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee--hhhC----------------ceeeeeeEE-ECCEEEEEEccCcEEEE
Confidence 3455447888899999999999998874421 1111 223332222 4778888877 999999
Q ss_pred ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 274 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 274 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+.++ +.....+...+... .+....+++..|..|+.|++.+..|..+.
T Consensus 79 ~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 79 CVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred Eecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEeccccc
Confidence 9987 87777776554332 35667789999999999999999998875
No 361
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.88 E-value=0.32 Score=43.85 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=36.3
Q ss_pred ceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644 140 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 198 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 198 (421)
..++|+|.|||+++++-..|.|++++.. +.....+.... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4578999999988776699999999943 22211121111 122334567899999995
No 362
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.86 E-value=0.0046 Score=37.04 Aligned_cols=40 Identities=18% Similarity=0.510 Sum_probs=32.1
Q ss_pred ccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC
Q 014644 24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 65 (421)
Q Consensus 24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~ 65 (421)
|..+........|.+++| +|..+++|.+..||.|.++++.
T Consensus 2 f~~~~~k~l~~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSW--CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence 334444445678999999 5888999999999999999984
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.75 E-value=0.12 Score=37.38 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=61.5
Q ss_pred eeEEEE---ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 190 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 190 v~~~~~---~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
|.++++ .-+|.+.|+.|+.|..||+|+=..- . ..+.. .+.|..+.-...+ .++.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~----~Ei~e--------------~~~v~~L~~~~~~-~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--V----AEITE--------------TDKVTSLCSLGGG-RFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--E----EEEec--------------ccceEEEEEcCCC-EEEEEe
Confidence 455554 4455588999999999999985431 1 22233 4678888877765 455554
Q ss_pred -CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---CC-CEEEEeeCCCeEE
Q 014644 267 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR 329 (421)
Q Consensus 267 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~-~~l~~~s~dg~i~ 329 (421)
.|+|-+|+-. +.+.+.+..... .++++.. || .-|++|-.+|.|-
T Consensus 61 ~NGTVGvY~~~---~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 61 ANGTVGVYDRS---QRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCEEEEEeCc---ceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4999999853 333334333332 3443332 33 3588888888874
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.64 E-value=0.44 Score=42.13 Aligned_cols=261 Identities=12% Similarity=0.074 Sum_probs=128.7
Q ss_pred cCCCCeEEEEe----------CCCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 44 APNGSMFILST----------NDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 44 ~~~~~~l~t~s----------~d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
+|+++.+.+++ ..-.|.+||..+-... .+.. ........ .+.... ...+.+++++.--.+..
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i-P~k~R~~~----~~~~~~--~~ls~dgk~~~V~N~TP 116 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI-PPKPRAQV----VPYKNM--FALSADGKFLYVQNFTP 116 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE-TTS-B--B----S--GGG--EEE-TTSSEEEEEEESS
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec-CCcchhee----cccccc--eEEccCCcEEEEEccCC
Confidence 68888777653 3447999999886522 2221 11100000 001111 22333444444444444
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe-e
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T 191 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~ 191 (421)
...+.+.|++.. +.++.+ .-.+ +..+--+++..+...|.||++.-..+...++..... .+ .+..-.+++ .
T Consensus 117 a~SVtVVDl~~~---kvv~ei--~~PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~--~F~~~~dp~f~ 187 (342)
T PF06433_consen 117 ATSVTVVDLAAK---KVVGEI--DTPG-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS-TK--VFDPDDDPLFE 187 (342)
T ss_dssp SEEEEEEETTTT---EEEEEE--EGTS-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE-EE--ESSTTTS-B-S
T ss_pred CCeEEEEECCCC---ceeeee--cCCC-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEee-cc--ccCCCCccccc
Confidence 445667777665 444444 1111 111111223334444588888888887555543221 01 112222222 2
Q ss_pred EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE----e--
Q 014644 192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----R-- 265 (421)
Q Consensus 192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~-- 265 (421)
.-++...+ ..++..+..|.|+--|+....... ...+.. ....... -.--.+.-.-+++++....|.. +
T Consensus 188 ~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~-~t~~e~~--~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSL-LTDAEKA--DGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEES-S-HHHHH--TTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccc-cCccccc--cCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 34455555 567778899999888887654211 111111 0000000 0001233445777765544432 1
Q ss_pred -c--C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEEEEecCCCCC
Q 014644 266 -D--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSA 338 (421)
Q Consensus 266 -~--~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~iwd~~~~~~ 338 (421)
+ + ..|.++|+.+ ++.+.++...... .+++.+.+.+ +|++.+ .++.+.+||..++ .
T Consensus 262 gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k 323 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVYDAATG-K 323 (342)
T ss_dssp T-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEEETTT---
T ss_pred CCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-c
Confidence 1 2 3688889987 8888888764432 5888888765 555544 5799999999998 4
Q ss_pred ceeEEe
Q 014644 339 GGITVE 344 (421)
Q Consensus 339 ~~~~~~ 344 (421)
....+.
T Consensus 324 ~~~~~~ 329 (342)
T PF06433_consen 324 LVRSIE 329 (342)
T ss_dssp EEEEE-
T ss_pred EEeehh
Confidence 444433
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.56 Score=43.21 Aligned_cols=151 Identities=10% Similarity=0.093 Sum_probs=98.5
Q ss_pred eEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---CCeEEEE
Q 014644 141 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLV 215 (421)
Q Consensus 141 v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---d~~v~iw 215 (421)
-..++.++.+..+.. . .+..|.+.|.. ......... .+ .....++++|++ +.++.+.. ++++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~------vG--~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIP------VG--LGPVGLAVDPDG-KYVYVANAGNGNNTVSVI 145 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEee------ec--cCCceEEECCCC-CEEEEEecccCCceEEEE
Confidence 456778888885555 4 67999999977 333333321 11 256789999999 66666554 6888888
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCccee-----EEeec
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA-----TFKIH 288 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~-----~~~~~ 288 (421)
|..+..... ....+ ..+ ..++++|+|..+.... . +.|.+.|... ..... .....
T Consensus 146 d~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~ 206 (381)
T COG3391 146 DAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG 206 (381)
T ss_pred eCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC
Confidence 888766441 11111 123 8999999999877664 3 9999999764 33221 11112
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCC
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 336 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~ 336 (421)
..+ ..+.++|+|..+...... +.+...|..++
T Consensus 207 ~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 207 TGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 222 478999999977665543 58888887766
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.52 E-value=0.12 Score=48.35 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=68.4
Q ss_pred cceeEEEEcCC----C-CEEEEecCCeEEEEECCCC----CcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644 248 ASISDIKFAND----G-QHLLSRDYMNLKLWDIRMD----STPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGL 317 (421)
Q Consensus 248 ~~v~~~~~s~~----~-~~l~~~~~~~i~i~d~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 317 (421)
..|.++.|.|- - .+||.-....|.+|.+... ++.+..... .....+.+. .++.|+|...
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLp-----------QGCVWHPk~~ 125 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLP-----------QGCVWHPKKA 125 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCC-----------CcccccCCCc
Confidence 45899999984 2 3555555588999998631 222221111 111222222 5789999988
Q ss_pred EEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeE
Q 014644 318 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 397 (421)
Q Consensus 318 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~ 397 (421)
.|+.-.....-.+++++.....++ .-+...+.|.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVk----------------------------------------------aDi~~~G~Ih 159 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVK----------------------------------------------ADIKTSGLIH 159 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEE----------------------------------------------EeccCCceEE
Confidence 877665544444556554411111 1112246788
Q ss_pred EEEEccCCCeEEEecCCc--eEEEe
Q 014644 398 HLAWHPTTNLIACANGNS--LFFHY 420 (421)
Q Consensus 398 ~~~~spd~~~la~~~~~~--~~i~~ 420 (421)
+.+|.+||+.|+++-... -|||+
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEec
Confidence 999999999988776554 57775
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.55 Score=41.54 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=89.1
Q ss_pred cceEEEeecCCCCEEEEE-c---------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-
Q 014644 139 FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS- 207 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~- 207 (421)
...+.+...|+|.+.++. . ...=.||-+...+...+.+ ..+-..-.+++||||+ +.++.+.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-------~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-------DDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-------cCcEEecCceEECCCC-CEEEEEeC
Confidence 456788889999888875 4 1112345444223344333 3334456789999999 6666665
Q ss_pred cCCeEEEEECCc--ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCccee
Q 014644 208 SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 208 ~d~~v~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~ 283 (421)
..+.|.-|++.. +..... . ....+....+..-.++...+|.+-+++.. +.|.+|+.. ++.+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~--~----------~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~ 248 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGR--R----------GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLG 248 (307)
T ss_pred CCCeEEEEecCcccCccCCc--c----------eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEE
Confidence 447888887763 111100 0 00111223567778889999988865543 489999985 88888
Q ss_pred EEeeccCcccccccccCCCcceeeeEEEEc-CCCCEEEEee
Q 014644 284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGS 323 (421)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s 323 (421)
.+..+.... .+++|- |+.+.|+..+
T Consensus 249 ~i~lP~~~~---------------t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 249 EIKLPVKRP---------------TNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCCCCC---------------ccceEeCCCcCEEEEEe
Confidence 887774333 567775 3445554443
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.73 Score=42.50 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=101.1
Q ss_pred ceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcCCeEEE
Q 014644 140 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRL 214 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~i 214 (421)
....++++|+++.+..+ . ++++.+.|..+ ....... .....+ ..++++|+| ..+ ++-..++.|.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~-------~vG~~P-~~~a~~p~g-~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATI-------PVGNTP-TGVAVDPDG-NKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEE-------ecCCCc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence 55688999999888876 4 57788888773 3333323 111133 889999999 644 44457899999
Q ss_pred EECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeE-Eeec
Q 014644 215 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH 288 (421)
Q Consensus 215 wd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~-~~~~ 288 (421)
.|........ ........ ......+.++|+|.++....+ +.+...|..+ +..... ....
T Consensus 187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~ 251 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG 251 (381)
T ss_pred EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence 9977654321 00001111 234578999999997776533 4788888875 444433 2222
Q ss_pred cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCC
Q 014644 289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 336 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~ 336 (421)
.... ..+..+|+|+.+.+... .+.+.+-|..+.
T Consensus 252 ~~~~---------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 252 SGAP---------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cCCC---------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2111 47899999999888744 588998888765
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.062 Score=49.38 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=80.9
Q ss_pred EeecccceeeeeeeecCCCCcceEEEeecCCCC--E-----EEEE-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCC
Q 014644 119 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--T-----FVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEV 189 (421)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~-----l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (421)
.|++.+ +.+..+ .-|.. |.-+.+.|+.+ . -+.| .|..|.-||++..+. .+...+.+ -......
T Consensus 361 lDIE~G---KIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k---qy~~k~n 432 (644)
T KOG2395|consen 361 LDIERG---KIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK---QYSTKNN 432 (644)
T ss_pred eecccc---eeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc---ccccccc
Confidence 344444 555555 33433 66666777532 2 2346 899999999984443 22211111 1112234
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 269 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 269 (421)
-.|.+-..+| +|+.||.+|-||+||- .+.... .. +++...+|..+..+.||++|++.++..
T Consensus 433 Fsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA-------------lPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 433 FSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA-------------LPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred cceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc-------------ccccCCceeeEEeeccCcEEEEecccE
Confidence 4565555554 8999999999999996 332111 11 233467899999999999999888777
Q ss_pred EEEEECC
Q 014644 270 LKLWDIR 276 (421)
Q Consensus 270 i~i~d~~ 276 (421)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7777764
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.57 Score=39.91 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=66.1
Q ss_pred eeEEEEecCCCCeEEEEEcCCe-EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c-
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D- 266 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~- 266 (421)
-..++|+|..+.-++.+-.-|+ ..++|....+........-..| |.+| =.|||||++|.+. .
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---------fyGH------Gvfs~dG~~LYATEnd 134 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---------FYGH------GVFSPDGRLLYATEND 134 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce---------eecc------cccCCCCcEEEeecCC
Confidence 3457888887677777776665 4678888765432111111111 2222 3599999999864 1
Q ss_pred ---C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644 267 ---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 323 (421)
Q Consensus 267 ---~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s 323 (421)
. |.|-|||.+..-+.+-.+..|.-.. ..+.+.+||+.|+.+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence 2 8899999975334445555544332 5789999999987664
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.27 E-value=1.1 Score=43.77 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=64.4
Q ss_pred eEEEeecCCCCEEEEE-cC-CcEEEEeCCCCceeeeeeecCCCCCC-ccCCCeeEEEEecCCCCeEEEEEcCCeEEE---
Q 014644 141 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL--- 214 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i--- 214 (421)
...-.|+|||+.|.+. +. ..+++.+-....+.. .+.+...... .....|..+.|+||| ..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~-~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA-RTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEE-EEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 7788999998888776 32 233444333222222 1111111111 234579999999999 7776655 567766
Q ss_pred EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcc
Q 014644 215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP 281 (421)
Q Consensus 215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~ 281 (421)
-....+.. .+-.. +.........+..+.|..++.+++....+.-.+|.+.-++..
T Consensus 476 vr~~~G~~-----~l~~~-------~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 476 EQTEDGQY-----ALTNP-------REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred EeCCCCce-----eeccc-------EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence 33233321 11000 000011123467899999998665443333344544433433
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.24 E-value=1.1 Score=42.33 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=82.7
Q ss_pred ccccCCCccccccccccccEEEEEEEEcCC--CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccccccccee
Q 014644 17 FQSHEPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 94 (421)
Q Consensus 17 ~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~--~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 94 (421)
+++.+++|-.-+-+|.-+.|..+.|.|--. ...|++.--.+.|.||.+.-......+.
T Consensus 40 l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~-------------------- 99 (671)
T PF15390_consen 40 LHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL-------------------- 99 (671)
T ss_pred eeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc--------------------
Confidence 356678888888888889999999954321 3356666777899999976322110000
Q ss_pred eccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCcee
Q 014644 95 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC 172 (421)
Q Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~ 172 (421)
+.+ .-.+.. +..-.+ -..+.|+|....|+.- .|-. .++++......
T Consensus 100 ----------l~s-----------QtcEi~---e~~pvL-------pQGCVWHPk~~iL~VLT~~dvS-V~~sV~~d~sr 147 (671)
T PF15390_consen 100 ----------LMS-----------QTCEIR---EPFPVL-------PQGCVWHPKKAILTVLTARDVS-VLPSVHCDSSR 147 (671)
T ss_pred ----------eee-----------eeeecc---CCcccC-------CCcccccCCCceEEEEecCcee-EeeeeeeCCce
Confidence 000 000000 111111 2356789988887764 4433 35566533333
Q ss_pred eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644 173 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 173 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~ 220 (421)
++. .+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 148 Vka------Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 148 VKA------DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEE------ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 332 11 245779999999999444444444445678886543
No 373
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.17 E-value=0.37 Score=41.51 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=85.9
Q ss_pred ceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE-
Q 014644 140 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD- 216 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd- 216 (421)
.+.+.+++++++.++.- .++.-.||-....+...... . ...+....|++++ ...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-------~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-------T--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-------c--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 68899999999988763 35555555554333332221 1 2367788999998 7776666666666664
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec----CCeEEEEECCCCCcc-eeEEeeccCc
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL 291 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~i~d~~~~~~~-~~~~~~~~~~ 291 (421)
...+............ ...|..+.+||||..++.-. .+.|.+--+.....- -..+......
T Consensus 95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 3333221111111111 12799999999999887532 377777665421111 1111110000
Q ss_pred ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 326 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg 326 (421)
. ......+.+++|.+++.+++.+...+
T Consensus 161 ~--------~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 161 A--------PPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------ccccCcceeeeecCCCEEEEEeCCCC
Confidence 0 00001236899999998877665433
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.73 Score=39.54 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=106.7
Q ss_pred ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644 30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 108 (421)
Q Consensus 30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 108 (421)
.+.+..|.++.| +|+.+.|++......-.||=-.+|. +..+..
T Consensus 82 ~g~~~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL---------------------------------- 125 (316)
T COG3204 82 LGETANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL---------------------------------- 125 (316)
T ss_pred ccccccccceee--CCCcceEEEecCCCceEEEEecCCceEEEecc----------------------------------
Confidence 344566899999 7888888888777776676555554 222211
Q ss_pred ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee--cCCCCCCc
Q 014644 109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDD 185 (421)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~--~~~~~~~~ 185 (421)
.+ -.....+.+..++++.++- .++.+.++.+........... ++......
T Consensus 126 --------------------------~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k 178 (316)
T COG3204 126 --------------------------TG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK 178 (316)
T ss_pred --------------------------cc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCC
Confidence 11 1123456667677777777 888888888774433222111 11111122
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEE
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS 264 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 264 (421)
.......++|.|.. +.|..+-+..-+.||.+.... ..+..|. .........-.-..+.++.|.+... +++-
T Consensus 179 ~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 179 KNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred CCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------ccccccc-ccCcccccceEeeccccceecCCCCcEEEE
Confidence 24567899999998 788888777777777766432 1122110 0000000000124578889997544 4444
Q ss_pred ecC-CeEEEEECCCCCcceeEEeeccC
Q 014644 265 RDY-MNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
+.+ +.+.-.|.. +.++..+..+.+
T Consensus 251 S~ESr~l~Evd~~--G~~~~~lsL~~g 275 (316)
T COG3204 251 SDESRRLLEVDLS--GEVIELLSLTKG 275 (316)
T ss_pred ecCCceEEEEecC--CCeeeeEEeccC
Confidence 544 777777764 666666554443
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.02 E-value=0.029 Score=33.60 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=28.8
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 218 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~ 218 (421)
....|.+++|+|.. .+||.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 34679999999998 999999999999999983
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.96 E-value=1.4 Score=41.15 Aligned_cols=225 Identities=8% Similarity=0.001 Sum_probs=108.4
Q ss_pred ceEEEeecCCCCEEEEE--cCC----cEEEEeCCCCceeee-eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC--
Q 014644 140 NINSISNNSDCETFVSA--DDL----RINLWNLEISDQCFN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-- 210 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~--~d~----~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~-- 210 (421)
.+....++|+|+++|.+ ..| .|++.|+++ ++.+. .+ . ...-.++.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i-------~--~~~~~~~~W~~d~-~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGI-------E--NPKFSSVSWSDDG-KGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEE-------E--EEESEEEEECTTS-SEEEEEECSTTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcc-------c--ccccceEEEeCCC-CEEEEEEeCccc
Confidence 44567899999999975 333 599999984 44332 21 1 1112249999998 6665554332
Q ss_pred ---------eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--c--C-CeEEEEECC
Q 014644 211 ---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D--Y-MNLKLWDIR 276 (421)
Q Consensus 211 ---------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~-~~i~i~d~~ 276 (421)
.|+.|.+.+....+ ..+++.. ........+..++|+++|+.. + . ..+++.|+.
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~-----------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSED--ELVFEEP-----------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG---EEEEC-T-----------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred ccccCCCCcEEEEEECCCChHhC--eeEEeec-----------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 36777776643221 1233320 001125678899999998753 2 2 458888887
Q ss_pred CC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee---CCCeEEEEecCCCCC--ceeEEecCCC
Q 014644 277 MD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSA--GGITVEAGKN 348 (421)
Q Consensus 277 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s---~dg~i~iwd~~~~~~--~~~~~~~~~~ 348 (421)
.. ......+....... . ..+... ++.+++... ..+.|.-.++..... ....+..+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~-----------~---~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGV-----------E---YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp CTTTSS-SEEEEEESSSS------------E---EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred ccCCCcCCcEEEeCCCCce-----------E---EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC
Confidence 52 12333333322221 0 122222 443433332 246677778776642 1335555555
Q ss_pred CccceeeecCCcccccccceeeeecccCc-ccC--CCC-Cc-ccc-ccccccCeEEEEEccCCCeEE
Q 014644 349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GH-HEL-SYNLSSKLLHLAWHPTTNLIA 409 (421)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~-~~-~~~-~~~~~~~v~~~~~spd~~~la 409 (421)
.+....+... + ..+++....++. +|. +.. +. ... ...-.+.|..+...++++.+.
T Consensus 326 ~~~l~~~~~~--~----~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 326 DVSLEDVSLF--K----DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp SEEEEEEEEE--T----TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred ceeEEEEEEE--C----CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 3322333322 1 114455555555 554 333 21 111 112233455666566665544
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.92 E-value=1.3 Score=40.47 Aligned_cols=176 Identities=11% Similarity=0.003 Sum_probs=74.4
Q ss_pred EEeecCCCCEEEEE-c--C----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--------
Q 014644 143 SISNNSDCETFVSA-D--D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------- 207 (421)
Q Consensus 143 ~l~~~~~~~~l~s~-~--d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------- 207 (421)
.+..-|+|+.++++ . + |-+.+.|-+ +.+.....+. -.+...--+.+-|.|.. +.++|..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-tf~v~g~We~----~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~ 207 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE-TFEVKGRWEK----DRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFE 207 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TT-T--EEEE--S----B-TT------EEEETTT-TEEEE-B---HHHHT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCc-cccccceecc----CCCCCCCCCCeEEcCCC-CEEEEeccCChhhcc
Confidence 34445688888884 2 2 346666665 2333322210 01122334667788876 7777754
Q ss_pred ------------cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec--CCeEE
Q 014644 208 ------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD--YMNLK 271 (421)
Q Consensus 208 ------------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~--~~~i~ 271 (421)
...++.+||+.+.+.. +.++. .........+.|..+ ..+=+++. ..+|.
T Consensus 208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~----Q~idL-----------g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~ 272 (461)
T PF05694_consen 208 KGFNPEDLEAGKYGHSLHVWDWSTRKLL----QTIDL-----------GEEGQMPLEVRFLHDPDANYGFVGCALSSSIW 272 (461)
T ss_dssp T---TTTHHHH-S--EEEEEETTTTEEE----EEEES------------TTEEEEEEEEE-SSTT--EEEEEEE--EEEE
T ss_pred cCCChhHhhcccccCeEEEEECCCCcEe----eEEec-----------CCCCCceEEEEecCCCCccceEEEEeccceEE
Confidence 2458999999987654 44443 000124556777644 44444432 24555
Q ss_pred EEECCCCCcce--eEEeeccC-----ccccc-ccccC-CCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCcee
Q 014644 272 LWDIRMDSTPV--ATFKIHEH-----LRPKL-CDLYN-NDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGI 341 (421)
Q Consensus 272 i~d~~~~~~~~--~~~~~~~~-----~~~~~-~~~~~-~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~ 341 (421)
.|--...++.. +.+..... ..+.+ ..... ... ++.+..|.|.++|.... .+|.|+.||+........
T Consensus 273 ~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L---itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 273 RFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL---ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc---eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 54432223211 11111110 00000 00000 001 27899999999998766 489999999987644433
Q ss_pred E
Q 014644 342 T 342 (421)
Q Consensus 342 ~ 342 (421)
+
T Consensus 350 ~ 350 (461)
T PF05694_consen 350 V 350 (461)
T ss_dssp E
T ss_pred E
Confidence 3
No 378
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.85 E-value=1.5 Score=40.46 Aligned_cols=33 Identities=3% Similarity=0.147 Sum_probs=27.7
Q ss_pred cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce
Q 014644 33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 68 (421)
Q Consensus 33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~ 68 (421)
.++|++++. .+=.++|.|..+|.+.|-|++...
T Consensus 86 ~g~vtal~~---S~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 86 QGPVTALKN---SDIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTE
T ss_pred CCcEeEEec---CCCcEEEEEecCCcEEEEECCCCe
Confidence 689999998 466799999999999999997765
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.039 Score=54.95 Aligned_cols=99 Identities=9% Similarity=-0.035 Sum_probs=69.1
Q ss_pred CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 258 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 258 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+..++.|++ |.+-..|+...-.+...-..-.. .|.+++|+.+|+.++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~---------------~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQG---------------PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCC---------------cceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 4667888877 89999998631111111111111 2379999999999999999999999999987
Q ss_pred CCceeEEecCCCCccceeeecCCcccccccceeeeecccC
Q 014644 337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ 376 (421)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~ 376 (421)
...+.+..|..+...+.+..-. ++ ...+.++...|
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t-~~---nS~llt~D~~G 197 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRT-SQ---NSKLLTSDTGG 197 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEe-CC---CcEEEEccCCC
Confidence 7788888888888888776432 22 33566665555
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.065 Score=53.46 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=69.3
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 279 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~ 279 (421)
..++.|+..|.+...|+...- . .. .... .-.++|++++|+.+|..++.|-. |.|.+||+.+ +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL-~-~~--~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL-G-PL--HQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc-c-hh--hcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 568888888999888877631 1 00 1111 11578999999999999999954 9999999986 8
Q ss_pred cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644 280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 327 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~ 327 (421)
.+++.+..+..+... +.-+.+..++..++++...|.
T Consensus 163 k~l~~i~e~~ap~t~------------vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTG------------VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceeeeeecCCccce------------EEEEEEeCCCcEEEEccCCCc
Confidence 888888777665421 134555556667777777776
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.68 E-value=1.4 Score=38.86 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=77.5
Q ss_pred CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644 136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 214 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i 214 (421)
.-.+.+..+..++||++++++ ......-||.- ........ ......|.++.|.|++ .+.+ ....|.|++
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~------r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHN------RNSSRRIQSMGFSPDG-NLWM-LARGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--------SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEc------cCccceehhceecCCC-CEEE-EeCCcEEEE
Confidence 445678888899999999999 44455677754 22222211 2345789999999997 6555 448898888
Q ss_pred EEC-CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccc
Q 014644 215 VDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP 293 (421)
Q Consensus 215 wd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 293 (421)
=+. .... .+..+ ..+. ..-.-.+..++|.++++..++|..|.+. ..... ++.-++.+.-.....
T Consensus 212 s~~~~~~~-------~w~~~-~~~~-----~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~Dg-GktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 212 SDDPDDGE-------TWSEP-IIPI-----KTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDG-GKTWQKDRVGENVPS 276 (302)
T ss_dssp EE-TTEEE-------EE----B-TT-----SS--S-EEEEEESSSS-EEEEESTT-EE-EESST-TSS-EE-GGGTTSSS
T ss_pred ccCCCCcc-------ccccc-cCCc-----ccCceeeEEEEecCCCCEEEEeCCccEE-EeCCC-CccceECccccCCCC
Confidence 772 2221 11110 0000 0012347899999999888888766443 33332 544333332221111
Q ss_pred ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644 294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw 331 (421)
. .+.+.|.++.+-++ -+.+|.|--|
T Consensus 277 n------------~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 277 N------------LYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp ---------------EEEEEETTEEEE-E-STTEEEEE
T ss_pred c------------eEEEEEcCCCceEE-ECCCcEEEEe
Confidence 1 15788876655454 4456776544
No 382
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.40 E-value=2.4 Score=39.72 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=38.1
Q ss_pred CcceEEEeecCCCCEEEEEc-CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644 138 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 198 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 198 (421)
-...+.|+|.|||++|++-. .|.|++++.. .........+..............|+++|+
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCC
Confidence 34578999999998888874 7999999865 222111111111000113567899999987
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.35 E-value=1.9 Score=38.25 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=79.3
Q ss_pred EEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644 143 SISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 143 ~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~ 220 (421)
...|.++...|+-+ ..+.|.-|+..+... +.+ .+...+.++..-..+ ..|+++ .. -+.+++...+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~--------~~p~~~~~~~~~d~~-g~Lv~~-~~-g~~~~~~~~~ 95 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVF--------PSPGGFSSGALIDAG-GRLIAC-EH-GVRLLDPDTG 95 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEE--------ECCCCcccceeecCC-CeEEEE-cc-ccEEEeccCC
Confidence 34577777755544 788899998873322 222 122333444333333 344443 23 3566776554
Q ss_pred cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c---------CCeEEEEECCCCCcceeEEeeccC
Q 014644 221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---------~~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
............ ......+.+...|+|.+-++. . ...-.+|-+...+..++.+..+-.
T Consensus 96 ~~~t~~~~~~~~------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 96 GKITLLAEPEDG------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred ceeEEeccccCC------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 321100011111 012456788889999877753 2 111134443322444444333211
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 334 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~ 334 (421)
.. ++++||||++.|+.... .+.|+-|++.
T Consensus 164 ~~---------------NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 164 IP---------------NGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ec---------------CceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 11 68999999988877654 5788888776
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.28 E-value=0.87 Score=44.16 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=67.7
Q ss_pred EeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe--cCCCCeEEEEEcCCeEEEEECCcc
Q 014644 144 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 144 l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~d~~v~iwd~~~~ 220 (421)
+.-+.-++..+.. ...++.|||.+...-..+. .+ ...+.|..+.|. |++ +.+++.+....|.+|--...
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccch
Confidence 3334444444444 6678999999833322221 22 346789999885 677 88888889999998854221
Q ss_pred c-----ccccchhhhccccccCCCccccccc-ccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644 221 A-----LCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNLKLWDIR 276 (421)
Q Consensus 221 ~-----~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~ 276 (421)
. .....++.++ +..+ ..+|.+..|.++|.++++++ +++.|+|-.
T Consensus 107 dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW 156 (631)
T ss_pred hhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence 1 1000111111 1112 25789999999996665544 689999864
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.22 E-value=0.076 Score=43.44 Aligned_cols=105 Identities=14% Similarity=0.039 Sum_probs=60.7
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE-EEEcCCCCEEEEecC-CeEEEEECCCC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRDY-MNLKLWDIRMD 278 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-~~i~i~d~~~~ 278 (421)
..+++|+.+|.|.+|........ ...+.. ....+.+ +.--.++.+..++.. +.|+.|+...
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~---~d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p- 133 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAH---SDRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP- 133 (238)
T ss_pred ceEEeecccceEEEecCCccchH---HHhhhc-------------ccccceeccccccccceeEEeccCCceeeecccc-
Confidence 67899999999999987632211 111111 0122222 222223445556644 9999999975
Q ss_pred CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe--eCCCeEEEEecCCC
Q 014644 279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG 336 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~--s~dg~i~iwd~~~~ 336 (421)
.+.+.....|.... ......+..++.++.. |.|..++.|++...
T Consensus 134 ~k~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 134 NKVLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CceeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 66665555554210 0234444456666666 77778888887754
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.15 E-value=0.87 Score=39.23 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=82.0
Q ss_pred ceeEEEEcCCCCEEEEec--C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644 249 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 324 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~--~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~ 324 (421)
.+.+.+++++|+.++.-. + ..++++... +.......+. .. ...+|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~-~l----------------~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG-SL----------------TRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC-cc----------------ccccccCCCCEEEEEcC
Confidence 688999999999887644 3 556666543 3333222322 11 57899999887777776
Q ss_pred CCeEEEEe-cCCCCCceeEEecCC--CCccceeeecCCcccccccceeeeeccc--CcccC------CCCC---cccc--
Q 014644 325 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HHEL-- 388 (421)
Q Consensus 325 dg~i~iwd-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~d--~~~iw------~~~~---~~~~-- 388 (421)
+...+++. ...+......+.... ..|..+.++|+ |. .++.-..+ +.++| +..+ .+..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD--G~-----RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD--GT-----RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCC--Cc-----EEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 67767664 333322233333222 27889999998 55 33333322 22666 2222 1111
Q ss_pred --ccccccCeEEEEEccCCCeEEEec
Q 014644 389 --SYNLSSKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 389 --~~~~~~~v~~~~~spd~~~la~~~ 412 (421)
.......+++++|.+++.+++.+.
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeC
Confidence 112346789999999999888776
No 387
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.05 E-value=0.93 Score=45.14 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=53.6
Q ss_pred CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644 301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN 380 (421)
Q Consensus 301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw 380 (421)
+...|+|..+.++|+|++|+..+..|. .|-.+...-.....+++....+.+..+.-+
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~---------------------- 137 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVD---------------------- 137 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEec----------------------
Confidence 456678899999999999988887554 444443210011222222233322222222
Q ss_pred CCCCccccccccccCeEEEEEccCC---C-eEEEecCCceEEEeC
Q 014644 381 SSSGHHELSYNLSSKLLHLAWHPTT---N-LIACANGNSLFFHYA 421 (421)
Q Consensus 381 ~~~~~~~~~~~~~~~v~~~~~spd~---~-~la~~~~~~~~i~~~ 421 (421)
+... .......|..+.|||.+ . +++-.+++.+++|+.
T Consensus 138 ---~~~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 138 ---ERFF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred ---hhhc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 0000 11224678999999984 4 455566888999974
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.05 E-value=2.6 Score=38.19 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=71.1
Q ss_pred CCcceEEEeecCCCC-EEEEE----cCCc-EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---
Q 014644 137 HDFNINSISNNSDCE-TFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--- 207 (421)
Q Consensus 137 h~~~v~~l~~~~~~~-~l~s~----~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--- 207 (421)
-...+..+.|+|... +|+-| .+.. -|||-+++.+...+.+. + ..-...+..=-|.|+| ..|..-+
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~---~~~~e~~gHEfw~~DG-~~i~y~~~~~ 259 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--R---RMEGESVGHEFWVPDG-STIWYDSYTP 259 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--c---CCCCcccccccccCCC-CEEEEEeecC
Confidence 345677888999544 44444 3442 47787765554444331 0 1112344555689999 5444322
Q ss_pred --cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC----------------C
Q 014644 208 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY----------------M 268 (421)
Q Consensus 208 --~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~----------------~ 268 (421)
.+..|.-+|+.++... .... .....-+..++||++++. |++ .
T Consensus 260 ~~~~~~i~~~d~~t~~~~----~~~~---------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERR----RLME---------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp TT--EEEEEE-TTT--EE----EEEE---------------E-SEEEEEE-TTSSEEEEEE-------------------
T ss_pred CCCceEEEeeCCCCCCce----EEEe---------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 2335666777765421 1111 123445566788888874 332 1
Q ss_pred eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEe
Q 014644 269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFS 332 (421)
Q Consensus 269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd 332 (421)
.|+++++.. +... .+..|......+........ ....|+|||++++-.| ..|...||=
T Consensus 321 ~i~~~~~~~-~~~~-~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 321 WIYLFDVEA-GRFR-KLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EEEEEETTT-TEEE-EEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred EEEEecccc-Ccee-eeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEE
Confidence 456677764 3322 22223211100000000000 3689999999977655 466655553
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.02 E-value=1 Score=41.27 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=55.4
Q ss_pred cceEEEeecCCCCEEEEE-c-----------CC-cEEEEeCCCC-ce--eeeeeecCCCCCCccCCCeeEEEEecCCCCe
Q 014644 139 FNINSISNNSDCETFVSA-D-----------DL-RINLWNLEIS-DQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 202 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~-----------d~-~i~lwd~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 202 (421)
.....++|.++|+++++- . .+ .|.+++-... +. ...++ .........+++.+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-------a~~l~~p~Gi~~~~~G--- 83 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-------AEELSMVTGLAVAVGG--- 83 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-------ecCCCCccceeEecCC---
Confidence 346788999999988874 2 12 6666653212 22 12222 2223345788998886
Q ss_pred EEEEEcCCeEEEEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 203 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 203 l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
|+.++.....++.|.......+ +...++.. .... -..+......++|.|||.+.++
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSG--FGGQ----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEc--cCCC----CCcccccccCceECCCCCEEEe
Confidence 4444444433444554322111 11111111 0000 0001345789999999987665
No 390
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.94 E-value=2.3 Score=37.10 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=70.3
Q ss_pred eEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeee--eec-CC---CCCCccCCCeeEEE--EecCCCCeEEEEEcCCeE
Q 014644 141 INSISNNSDCETFVSADDLRINLWNLEISDQCFNI--VDM-KP---SNMDDLTEVITSAE--FHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~--~~~-~~---~~~~~~~~~v~~~~--~~p~~~~~l~s~~~d~~v 212 (421)
|..+...|+-+.|++-.|+.+.++++..-...... ... +. .........+...+ -...+ ...+.......|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEE
Confidence 88888888887777767799999998732211100 000 00 00011122333333 11333 344445556689
Q ss_pred EEEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCccee
Q 014644 213 RLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA 283 (421)
Q Consensus 213 ~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~ 283 (421)
.+|......... ...+.+.. ...+..++|. ++.++.|......+.|+.+ +....
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~~ 171 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPSE 171 (275)
T ss_pred EEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEecCC-CCceE
Confidence 988877642211 22233333 4678899998 6677777666789999985 54433
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.91 E-value=0.89 Score=41.56 Aligned_cols=133 Identities=10% Similarity=0.126 Sum_probs=62.1
Q ss_pred eEEEeecCCCCEEEEE-c--------------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--
Q 014644 141 INSISNNSDCETFVSA-D--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-- 197 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~-~--------------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-- 197 (421)
-..+-|.|..+.++|+ . ..++.+||+. ..+.++++++. ........+.|..
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P 256 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDP 256 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SST
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCC
Confidence 3566667777777764 2 3579999999 67788887532 2223456677754
Q ss_pred CCCCeEEEEEcCCeEEEEEC-CcccccccchhhhccccccCCCc-------ccccccccceeEEEEcCCCCEEEEecC--
Q 014644 198 IYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSK-------SFFTEIIASISDIKFANDGQHLLSRDY-- 267 (421)
Q Consensus 198 ~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (421)
+...-++.+....+|..|-- ..++-..+ ++++. ...+... ..+..-..-++.|.+|.|.++|..++-
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~i-p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDI-PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE---EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CccceEEEEeccceEEEEEEcCCCCeeee--EEEEC-CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 44233444445555554433 33321111 11111 0000000 112222456899999999999988754
Q ss_pred CeEEEEECCCCCcce
Q 014644 268 MNLKLWDIRMDSTPV 282 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~ 282 (421)
|.|+.||+.....+.
T Consensus 334 GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 334 GDVRQYDISDPFNPK 348 (461)
T ss_dssp TEEEEEE-SSTTS-E
T ss_pred CcEEEEecCCCCCCc
Confidence 999999997644443
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.83 E-value=0.12 Score=29.95 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.6
Q ss_pred CCeeEEEEecCCC--CeEEEEEcCCeEEEEECCc
Q 014644 188 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 188 ~~v~~~~~~p~~~--~~l~s~~~d~~v~iwd~~~ 219 (421)
+.++++.|+|... .+|+.+...+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998762 4888888889999999995
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.7 Score=46.94 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=90.2
Q ss_pred ceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeee--ecC-CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644 140 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIV--DMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 213 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~ 213 (421)
.+..+..++|++..+.. .+-.|..||+++-....... .++ ..+.........++.|+|.-+...+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566667787766653 44578899987322111000 000 0111222344567889998656677778899998
Q ss_pred EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644 214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 292 (421)
Q Consensus 214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~ 292 (421)
+..+...... ...+.. ....++++|+|.|+.++.|.. |++..|... .+....+.+...
T Consensus 182 V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~-- 240 (1405)
T KOG3630|consen 182 VKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV-- 240 (1405)
T ss_pred hhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc--
Confidence 8876543221 122222 457899999999999999977 999988764 343333333221
Q ss_pred cccccccCCCcceeeeEEEEcCCCCEEEE
Q 014644 293 PKLCDLYNNDSIFDKFECSVSGDGLHFAT 321 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~ 321 (421)
+++ +.|.+++|-....++++
T Consensus 241 ------~e~---yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 ------EEN---YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ------CCC---cceeEEEEecceeEEEE
Confidence 122 23378888776666653
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.81 E-value=1.9 Score=35.79 Aligned_cols=143 Identities=11% Similarity=0.038 Sum_probs=83.9
Q ss_pred CcceEEEeecCCCCEEEEE-cC---------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 207 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 207 (421)
..+.+.-..+|+|++.+-. .| |.++.|-.. .+.-.+ ...-..-..++|+.+...+.+.-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 4456677789999996653 33 344444443 211111 122233457889988734445556
Q ss_pred cCCeEEEEE--CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE
Q 014644 208 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT 284 (421)
Q Consensus 208 ~d~~v~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~ 284 (421)
.+-+|.-|| ..++..... ..+++.....+. .......+++..+|.+.++.-. ++|...|..+ ++.+..
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~-------e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e 248 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPF-------ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE 248 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCCc-------CCCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence 778887787 666553321 122322100000 0123345666777887777644 8999999987 998888
Q ss_pred EeeccCcccccccccCCCcceeeeEEEEcC
Q 014644 285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG 314 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 314 (421)
+..+...+ +++||--
T Consensus 249 iklPt~qi---------------tsccFgG 263 (310)
T KOG4499|consen 249 IKLPTPQI---------------TSCCFGG 263 (310)
T ss_pred EEcCCCce---------------EEEEecC
Confidence 88776544 7888864
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=0.16 Score=41.59 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=79.9
Q ss_pred eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCc
Q 014644 202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 280 (421)
Q Consensus 202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~ 280 (421)
.+...+.|+.|+-++++............ ... .....-+..++.|+ +|.|++|.....+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~----------------~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~ 92 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFI----------------DEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA 92 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhh----------------hcc---eeecccCceEEeecccceEEEecCCccch
Confidence 45556778888888877643221110000 111 11112345566664 49999999874344
Q ss_pred ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC-CCccceeeecCC
Q 014644 281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAP 359 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 359 (421)
....+......+. ..+.-..++.+..++..||.||.|++... ........|. .+.........
T Consensus 93 ~~d~~~s~~e~i~--------------~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~s- 156 (238)
T KOG2444|consen 93 HSDRVCSGEESID--------------LGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGS- 156 (238)
T ss_pred HHHhhhcccccce--------------eccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecC-
Confidence 3332222222110 12222335668889999999999999977 4455555565 55555555544
Q ss_pred cccccccceeeee--cccCc-ccCCCC
Q 014644 360 RARRSSLSNLTRG--LYRQA-HENSSS 383 (421)
Q Consensus 360 ~~~~~~~~~l~~g--~~d~~-~iw~~~ 383 (421)
+ .+++.. +.+.. +.|..+
T Consensus 157 -d-----~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 157 -D-----EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred -C-----ceEEeeccccchhhhhcchh
Confidence 2 266666 77777 999554
No 396
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.35 E-value=2.8 Score=35.39 Aligned_cols=107 Identities=9% Similarity=0.021 Sum_probs=66.7
Q ss_pred CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh
Q 014644 151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 229 (421)
Q Consensus 151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 229 (421)
++++.| ..+.+.--|..++...++.+ -..++.+-+.- -| .+++.|...|.+++.+..+|.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w----~ 88 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIW----N 88 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhhee----e
Confidence 344445 66777777776443333322 12334333333 24 679999999999999999986442 1
Q ss_pred hccccccCCCcccccccccce-eEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEee
Q 014644 230 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 287 (421)
Q Consensus 230 ~~~h~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~ 287 (421)
+.. .+.| ......+++.+|..|+. ++.+..|.++ ...+.+.+.
T Consensus 89 f~~--------------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskc 133 (354)
T KOG4649|consen 89 FVI--------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKC 133 (354)
T ss_pred eee--------------hhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEeccc
Confidence 111 1112 23456778999999976 9999999987 555555443
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.35 E-value=0.16 Score=29.51 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.2
Q ss_pred ceeEEEEcCCC---CEEEEecC-CeEEEEECCC
Q 014644 249 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM 277 (421)
Q Consensus 249 ~v~~~~~s~~~---~~l~~~~~-~~i~i~d~~~ 277 (421)
.+.+++|+|+. .+|+.+.+ +.+.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 58888877 9999999984
No 398
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.25 E-value=0.41 Score=40.09 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=52.3
Q ss_pred EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEE
Q 014644 195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 274 (421)
Q Consensus 195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d 274 (421)
+..++ .++++.+.+|.+++||+.+++...+...+... ........ ......|..+.++.+|.-+++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44566 78999999999999999998765333222111 00000000 0235678889999899888877778889998
Q ss_pred CCC
Q 014644 275 IRM 277 (421)
Q Consensus 275 ~~~ 277 (421)
...
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 764
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.14 E-value=7.3 Score=39.44 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCcceeeeEEEEcCC-CCEEEEeeC----------CCeEEEEecCCCCCceeEEecC--CCCccceeeecCCcccccccc
Q 014644 301 NDSIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLS 367 (421)
Q Consensus 301 ~~~~~~~~~~~~sp~-~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 367 (421)
++....+.++.|..| +.++++|.. .|.|.++.+... ........+ .+.+.++..-. |
T Consensus 771 ~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~fn---g------ 840 (1096)
T KOG1897|consen 771 NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVEFN---G------ 840 (1096)
T ss_pred cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-CceeeeeeeeeccceeehhhhC---C------
Confidence 445555567789887 777877763 578888888873 222222222 22222222211 2
Q ss_pred eeeeecccCccc--CCCCCccccccccccCeEEEEEccCCCeEEEec
Q 014644 368 NLTRGLYRQAHE--NSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 368 ~l~~g~~d~~~i--w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~ 412 (421)
.+..|-....++ |..+..+.....+...+..+...-.|..+|+|.
T Consensus 841 kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 841 KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 234443333344 455545555556677777888888888888876
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.08 E-value=7.2 Score=39.11 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=54.0
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeCCCC----------ce--eeeeeecCCCCC-CccCCCeeEEEEecCC--CCe
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNLEIS----------DQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL 202 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~~ 202 (421)
.-.|..+.++|+|++|+......|.|-.+... .. ..+++.+....+ ..+...|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34789999999999999873344555444211 01 112222221122 2345678999999974 367
Q ss_pred EEEEEcCCeEEEEECCccc
Q 014644 203 LAYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 203 l~s~~~d~~v~iwd~~~~~ 221 (421)
|+.-..|+++|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888899999999997644
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.49 E-value=0.8 Score=42.19 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=39.0
Q ss_pred ccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644 243 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL 291 (421)
Q Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~ 291 (421)
+.+....+.++..+|++++.++.+. |.|.++|+.+ +..++.+++..+.
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA 351 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA 351 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence 4455567889999999988888766 9999999986 8888888876653
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.46 E-value=1.9 Score=41.91 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=42.5
Q ss_pred ceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEc--CCCCEEEEeeC
Q 014644 249 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS--GDGLHFATGSY 324 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s--p~~~~l~~~s~ 324 (421)
.+.-+.-+.-++..++.++ ..+.|||.+. +.....-. ..... | .++.|. |+|+.+++.+.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~------------I---~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESFSEDDP------------I---RDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeeecCCCc------------e---eeceeeecCCCCEEEEEEc
Confidence 3444445555555555555 7899999975 44221111 11111 1 566654 68999999999
Q ss_pred CCeEEEEec
Q 014644 325 SNLLRIFSH 333 (421)
Q Consensus 325 dg~i~iwd~ 333 (421)
.+.|.++--
T Consensus 95 ~~~v~l~~Q 103 (631)
T PF12234_consen 95 PHHVLLYTQ 103 (631)
T ss_pred CcEEEEEEc
Confidence 999999863
No 403
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.39 E-value=6.9 Score=36.61 Aligned_cols=248 Identities=14% Similarity=0.153 Sum_probs=111.8
Q ss_pred EEEEcCCCCeEEEE-eCCC----cEEEeecCCceeEE--eeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644 40 RWCAAPNGSMFILS-TNDK----TIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 112 (421)
Q Consensus 40 ~~~~~~~~~~l~t~-s~d~----~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 112 (421)
.|..+|+++++|.+ +..| +|++.|+.+++... +..... ..+.|......++-.......... ...-
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~----~~~~W~~d~~~~~y~~~~~~~~~~---~~~~ 200 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF----SSVSWSDDGKGFFYTRFDEDQRTS---DSGY 200 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES----EEEEECTTSSEEEEEECSTTTSS----CCGC
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc----ceEEEeCCCCEEEEEEeCcccccc---cCCC
Confidence 34448999998866 3333 69999999987322 111110 013344333333322222111100 0000
Q ss_pred ccceeEEeecccceeeeeeeecCCCCcc--eEEEeecCCCCEEEEE--c--C-CcEEEEeCCCC---ceeeeeeecCCCC
Q 014644 113 NMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCETFVSA--D--D-LRINLWNLEIS---DQCFNIVDMKPSN 182 (421)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~--~--d-~~i~lwd~~~~---~~~~~~~~~~~~~ 182 (421)
...+..|.+.+.... ....+ .+.... ...+..++|+++|+.. . + ..+.+.+.... ....+.+
T Consensus 201 ~~~v~~~~~gt~~~~-d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l------ 272 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSE-DELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL------ 272 (414)
T ss_dssp CEEEEEEETTS-GGG--EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE------
T ss_pred CcEEEEEECCCChHh-CeeEE-eecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE------
Confidence 124566666654322 12333 332222 5678889999998863 2 3 45777787732 1222222
Q ss_pred CCccCCCe-eEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccCCCccccccccc--ceeEEEEc
Q 014644 183 MDDLTEVI-TSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFA 256 (421)
Q Consensus 183 ~~~~~~~v-~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~~~~s 256 (421)
......+ ..+... .+ .+++... ..+.|...++......... ..+ ..+.. .+..+..
T Consensus 273 -~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l-------------~~~~~~~~l~~~~~- 334 (414)
T PF02897_consen 273 -SPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWW-TVL-------------IPEDEDVSLEDVSL- 334 (414)
T ss_dssp -EESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEE-------------E--SSSEEEEEEEE-
T ss_pred -eCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccce-eEE-------------cCCCCceeEEEEEE-
Confidence 1222233 333333 33 4444332 2356666676664421000 011 11133 3444444
Q ss_pred CCCCEEEEe--cC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE--EeeC--CCeE
Q 014644 257 NDGQHLLSR--DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA--TGSY--SNLL 328 (421)
Q Consensus 257 ~~~~~l~~~--~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~--~~s~--dg~i 328 (421)
.+.+|+.. .+ ..|+++++.. +.....+...... .+..+...+++..+. ..|. -+++
T Consensus 335 -~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g--------------~v~~~~~~~~~~~~~~~~ss~~~P~~~ 398 (414)
T PF02897_consen 335 -FKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAG--------------SVSGVSGDFDSDELRFSYSSFTTPPTV 398 (414)
T ss_dssp -ETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSS--------------EEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred -ECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcce--------------EEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence 35555543 23 6789999872 3444444333221 013444445544432 2222 3578
Q ss_pred EEEecCCC
Q 014644 329 RIFSHGVG 336 (421)
Q Consensus 329 ~iwd~~~~ 336 (421)
+-||+.++
T Consensus 399 y~~d~~t~ 406 (414)
T PF02897_consen 399 YRYDLATG 406 (414)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88888877
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.28 E-value=5.9 Score=39.15 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=88.6
Q ss_pred CCEEEEEcCCcEEEEeCCCCceeee-----eeecCCCCCC---------ccCCCeeEEEEecCC-CCeEEEEEcCCeEEE
Q 014644 150 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL 214 (421)
Q Consensus 150 ~~~l~s~~d~~i~lwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~i 214 (421)
..+|+.+..+.|.||+.+.-.+... .+..++.... .....|..+...--| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888888999999873322111 1111111000 011224444332211 257888899999999
Q ss_pred EECCcccccccchhhhcccccc----C-CCcccccccccceeEEEEc--CCCCEEEEecC-CeEEEEECCCC-Ccc-eeE
Q 014644 215 VDMRQSALCDHSARILRDAAES----H-GSKSFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMD-STP-VAT 284 (421)
Q Consensus 215 wd~~~~~~~~~~~~~~~~h~~~----~-~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-~~i~i~d~~~~-~~~-~~~ 284 (421)
|.+..-... ......-.+. . ....+...-...+++++++ ...++||+++. ..|.||-.... .+. ...
T Consensus 129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 129 YYTETIIEA---IERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEHHHHHHH---HHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 987542100 0000000000 0 0011122234578999998 77888888876 77777765431 111 100
Q ss_pred EeeccCcccccccccCCCcceeeeEEEEcCC-----CC-EEEEeeCCCeEEEEec
Q 014644 285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL-HFATGSYSNLLRIFSH 333 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~-~l~~~s~dg~i~iwd~ 333 (421)
-..+...+ .+++|-++ |. +|++++-.|.+.+|++
T Consensus 206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 00122222 47777664 22 7888999999999888
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.21 E-value=0.71 Score=38.69 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=48.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccc
Q 014644 310 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 389 (421)
Q Consensus 310 ~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~ 389 (421)
+.+..++.+|++-+.+|.+++||+.+... .+.. ..+..+... . . ...
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~---~~~~--~Si~pll~~-~--------------------------~-~~~ 62 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKA---VLPP--VSIAPLLNS-S--------------------------P-VSD 62 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCee---ccCC--ccHHHHhcc-c--------------------------c-ccc
Confidence 34556789999999999999999997621 1111 000000000 0 0 000
Q ss_pred cccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644 390 YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 390 ~~~~~~v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
......|..+..+.+|.-|++-+++..|.|+
T Consensus 63 ~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 63 KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 0224668888888888888888877788886
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.02 E-value=5.4 Score=36.63 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=38.8
Q ss_pred CCeeEEEEecCCCCeEEEEE-----------cCC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644 188 EVITSAEFHPIYCNLLAYSS-----------SRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 255 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~-----------~d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~ 255 (421)
.....++|.++| +++++-. ..+ .|.+++-..+.-......++.. .......+++
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-------------~l~~p~Gi~~ 79 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-------------ELSMVTGLAV 79 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-------------CCCCccceeE
Confidence 446788999998 7666542 122 6766654432211111112211 1235688999
Q ss_pred cCCCCEEEEecCCeEE-EEECC
Q 014644 256 ANDGQHLLSRDYMNLK-LWDIR 276 (421)
Q Consensus 256 s~~~~~l~~~~~~~i~-i~d~~ 276 (421)
.++| ++++. ...|. +.|..
T Consensus 80 ~~~G-lyV~~-~~~i~~~~d~~ 99 (367)
T TIGR02604 80 AVGG-VYVAT-PPDILFLRDKD 99 (367)
T ss_pred ecCC-EEEeC-CCeEEEEeCCC
Confidence 9988 55543 33444 44553
No 407
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.79 E-value=9.5 Score=36.61 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCCEEEEeeCCCeEEEEecCCCCCc
Q 014644 315 DGLHFATGSYSNLLRIFSHGVGSAG 339 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~~~~~ 339 (421)
.+..|+.++.||.|+.+|..+++..
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4578889999999999999998443
No 408
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=2.6 Score=39.29 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=50.5
Q ss_pred cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCC
Q 014644 303 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS 382 (421)
Q Consensus 303 ~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~ 382 (421)
-.|.|..+..++.|..++-.+.+|.+.++=-+.. .....+.-....|.+-.+.-+
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw-G~~s~~eDgk~~v~CRt~~i~------------------------ 156 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRW-GKNSEFEDGKSTVNCRTTPVA------------------------ 156 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEchhhc-CccceecCCCceEEEEeeccc------------------------
Confidence 3446678899999999988888887655332211 111222222222222222222
Q ss_pred CCccccccccccCeEEEEEccCC----CeEEEecCCceEEEe
Q 014644 383 SGHHELSYNLSSKLLHLAWHPTT----NLIACANGNSLFFHY 420 (421)
Q Consensus 383 ~~~~~~~~~~~~~v~~~~~spd~----~~la~~~~~~~~i~~ 420 (421)
..+.... ..-.+..++|||+. .+++..+++.+++|+
T Consensus 157 -~~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 157 -ERFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred -ceeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 1111111 12346788999986 556666788899997
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=5.2 Score=36.75 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=72.9
Q ss_pred EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccc
Q 014644 142 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 142 ~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~ 221 (421)
+.+-|....+.|++...|.+.=|-+...+..+.+ ..-....++|.++.|++|. +.||.--.+++|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 4455554455555446666777776533322111 0112244699999999998 999999999999999974432
Q ss_pred ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccC
Q 014644 222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 290 (421)
Q Consensus 222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 290 (421)
... .....| +.....|.+..|+.+ .-+|.-++..+-+|........++..+.+..
T Consensus 100 ~~l---~~~~~c----------k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~ 154 (657)
T KOG2377|consen 100 SQL---EYTQEC----------KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNL 154 (657)
T ss_pred hhh---HHHHHh----------ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhccc
Confidence 111 111110 112446889999866 4455444434666665443444444444443
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.38 E-value=14 Score=37.57 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=93.3
Q ss_pred CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CC----EE
Q 014644 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQ----HL 262 (421)
Q Consensus 189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~----~l 262 (421)
.++....+.+. ..++.++.++.+...++..+.+.....+.+ ...|.|+.++|- ++ ++
T Consensus 489 ~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~----------------e~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 489 KITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEF----------------EYEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred ceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeehee----------------cceeEEEecccCCCCCCcceEE
Confidence 34444444454 567777777877777777655221111222 357899999974 22 56
Q ss_pred EEecC-C-eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-
Q 014644 263 LSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG- 339 (421)
Q Consensus 263 ~~~~~-~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~- 339 (421)
+.|.. . .+.+.-+.. ...+.........+++. +.-.++-.|..+|.++..||.+..+.+....-.
T Consensus 552 aVG~Ws~~~~~l~~~pd-~~~~~~~~l~~~~iPRS-----------Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPD-LILITHEQLSGEIIPRS-----------ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred EEEeecceEEEEEECCC-cceeeeeccCCCccchh-----------eeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 77743 2 233333322 33332222211111110 123455556889999999999876655543111
Q ss_pred --eeEEecCCCCccceeeecCCcccccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccC--CCeEEEecCC
Q 014644 340 --GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPT--TNLIACANGN 414 (421)
Q Consensus 340 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd--~~~la~~~~~ 414 (421)
.+...-...|+.-..|+.. ++ ..+.+.++.-.-++ ..+.+.......+..-.-+.|+.+ ...||++..+
T Consensus 620 sd~Kk~~lGt~P~~Lr~f~sk--~~----t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~ 693 (1096)
T KOG1897|consen 620 SDRKKVTLGTQPISLRTFSSK--SR----TAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG 693 (1096)
T ss_pred ccccccccCCCCcEEEEEeeC--Cc----eEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC
Confidence 1111223344444444433 22 13333333333333 333333332222222122334333 3457777777
Q ss_pred ceEEE
Q 014644 415 SLFFH 419 (421)
Q Consensus 415 ~~~i~ 419 (421)
.+.|.
T Consensus 694 ~l~i~ 698 (1096)
T KOG1897|consen 694 ALTIG 698 (1096)
T ss_pred ceEEE
Confidence 77664
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=92.08 E-value=8.9 Score=34.64 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=85.2
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
...+.++.+.|++.+++++..|.+..- .+..++...... ..-...++++.+.|++ ..++. +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~------~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQ------RNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEee------CCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence 456889999999988888877765432 121233333321 2234678899999988 66554 45676653233
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
..+.. |.. ...+.. .....+..+.+.|++..++++..|.+.. ... .++.-...........
T Consensus 243 d~G~s-------W~~-~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~---- 303 (334)
T PRK13684 243 DDLES-------WSK-PIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS---- 303 (334)
T ss_pred CCCCc-------ccc-ccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc----
Confidence 33321 211 000000 0023567889999888888877665543 332 2333222221111100
Q ss_pred ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 332 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd 332 (421)
..+.+.|..+++.++ .+..|.|--|+
T Consensus 304 --------~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 304 --------NFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred --------ceEEEEEeCCCceEE-ECCCceEEEec
Confidence 115677776666655 44567776665
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=13 Score=36.51 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 207 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 207 (421)
+.+..+.-.|. .+-.+.|+.+..+|+...+|++.+|++- ++......+ -.+.....|..+.|..+| ++.-.
T Consensus 74 ~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~sv---g~e~~~~~I~ec~~f~~G---Vavlt 144 (829)
T KOG2280|consen 74 QLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSV---GFESQMSDIVECRFFHNG---VAVLT 144 (829)
T ss_pred cchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc--hhhhccccc---ccccccCceeEEEEecCc---eEEEe
Confidence 44444423444 7889999988888887899999999987 333322100 012223345555555566 34334
Q ss_pred cCCeEEEE
Q 014644 208 SRGFVRLV 215 (421)
Q Consensus 208 ~d~~v~iw 215 (421)
.+|.+.+-
T Consensus 145 ~~g~v~~i 152 (829)
T KOG2280|consen 145 VSGQVILI 152 (829)
T ss_pred cCCcEEEE
Confidence 45555433
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.38 E-value=0.2 Score=49.33 Aligned_cols=130 Identities=10% Similarity=0.044 Sum_probs=70.5
Q ss_pred cceEEEeecC---CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE-----------EecCCCCeE
Q 014644 139 FNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLL 203 (421)
Q Consensus 139 ~~v~~l~~~~---~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l 203 (421)
..+.-+.|.| +.-++..+ +++++++.++++..+ .++ .+|...+..++ .+||| ..+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~-------rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~ 250 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLF-------RSHSQRVTDMAFFAEGVLKLASLSPDG-TVF 250 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHH-------HhcCCCcccHHHHhhchhhheeeCCCC-cEE
Confidence 3345555554 56666677 899999988873332 222 44655444332 68999 999
Q ss_pred EEEEcCCeEEEEECCc-ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc
Q 014644 204 AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST 280 (421)
Q Consensus 204 ~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~ 280 (421)
+.++.||.+++|.+.- +.......+.|..|...+..... .|+..+..+... --.+++++++ ..+++|.... .+
T Consensus 251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l--c~~~~~~~v~i~-~w~~~Itttd~nre~k~w~~a~-w~ 326 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL--CHKQEILVVSIG-KWVLRITTTDVNREEKFWAEAP-WQ 326 (1283)
T ss_pred EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee--eccccccCCccc-eeEEEEecccCCcceeEeeccc-hh
Confidence 9999999999987653 22222233555554211111111 111111111100 1124556666 6799998764 44
Q ss_pred ce
Q 014644 281 PV 282 (421)
Q Consensus 281 ~~ 282 (421)
++
T Consensus 327 Cl 328 (1283)
T KOG1916|consen 327 CL 328 (1283)
T ss_pred hh
Confidence 43
No 414
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.01 E-value=2.3 Score=38.86 Aligned_cols=172 Identities=10% Similarity=-0.020 Sum_probs=89.9
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCcee-eeeeecCCCCCCc-cCCCee-EEEEecCCCCeEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC-FNIVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLA 204 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~ 204 (421)
+.++.+ ..-...|..+-..|||+.|..-....+.++++....-. .+..+.. ++ ....|+ ++..-..| ..++
T Consensus 211 e~i~~L-~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLL 284 (733)
T COG4590 211 EIIRLL-SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLL 284 (733)
T ss_pred hhhhhc-CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEE
Confidence 334444 45556778888899999988864478888888722111 1111110 11 001122 12223344 6788
Q ss_pred EEEcCCeEEEE-ECCcccc-cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc
Q 014644 205 YSSSRGFVRLV-DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP 281 (421)
Q Consensus 205 s~~~d~~v~iw-d~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~ 281 (421)
.++.||.|.-| |++.+.. .-.+.+.+.. ...++..+.-..+.+-+++-.. |++.++.... .+.
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l-------------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~ 350 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKL-------------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKL 350 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeecccc-------------CcccceeeccccccceEEEEcCCCceeeeeccc-Ccc
Confidence 88999998877 6554321 1111111111 0123333332223334444444 7777766533 222
Q ss_pred eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+-.-...+.. .-+++||++.++++-. .|.|+++.+++.
T Consensus 351 lL~~~~~~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 351 LLFERAYQAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred eehhhhhcCc----------------ceeeeCcccchheeec-CCceEEEEecCC
Confidence 2211111221 3579999998887543 588999998876
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.89 E-value=9.6 Score=32.71 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=66.2
Q ss_pred CCeeEEEEecCCCCeEEEEEcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
.-...+.|..++ .++-+.+.-| .|+.+|+.+++...+ ..+.. .---..++...|.-+.++=
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~--~~l~~--------------~~FgEGit~~~d~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQS--VPLPP--------------RYFGEGITILGDKLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEE--EE-TT--------------T--EEEEEEETTEEEEEES
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEE--EECCc--------------cccceeEEEECCEEEEEEe
Confidence 345678887777 7777777655 799999999864411 01111 0011234444322222232
Q ss_pred cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
..+...+||..+ -+.+.++.-.... +.++ .|++.|+.......|+++|-.+.
T Consensus 108 k~~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 108 KEGTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp SSSEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred cCCeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCccc
Confidence 348999999986 6777777654332 5777 46777777777889999997765
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=6.6 Score=36.13 Aligned_cols=106 Identities=9% Similarity=0.134 Sum_probs=67.5
Q ss_pred CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644 136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 214 (421)
Q Consensus 136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i 214 (421)
...++|.++.|++|.+.||.- .+.+|.+.+........... .+....+..|....|+.+ .-+|..+..| +-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~----~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT----QECKTKNANILGFCWTSS--TEIAFITDQG-IEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH----HHhccCcceeEEEEEecC--eeEEEEecCC-eEE
Confidence 445699999999999999998 99999999985222111110 011334456889999876 4566665555 556
Q ss_pred EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
|-....... ++.... |.-.|+-..|.++-+.++-
T Consensus 137 y~v~pekrs---lRlVks-------------~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 137 YQVLPEKRS---LRLVKS-------------HNLNVNWYMYCPETAVILL 170 (657)
T ss_pred EEEchhhhh---hhhhhh-------------cccCccEEEEccccceEee
Confidence 654432211 233333 3567888888888776543
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.51 E-value=5.7 Score=36.78 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC-eeEEEEecC--------------
Q 014644 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPI-------------- 198 (421)
Q Consensus 135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~-------------- 198 (421)
......+.++..+|++++.|+. .-|.|.|+|+. .+..+++. ++..+. +.-+.....
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence 4445568899999999988888 78999999998 55555543 222211 000000000
Q ss_pred ---CCCeEEEEEcCCeEEEEECCccc
Q 014644 199 ---YCNLLAYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 199 ---~~~~l~s~~~d~~v~iwd~~~~~ 221 (421)
..-+++.+-.-|.|-||.++.+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 00234556678999999999865
No 418
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.54 E-value=15 Score=33.00 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=65.4
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCe------EEEEECCcccccccchhhhcccc-ccCCCcccccccccceeEEEEcCCCC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGF------VRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~------v~iwd~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (421)
+.+..+.+.|++ ..+++.+.+|. +..+++...............+. ..+. ...+....-...+|++.++|.
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPD-GQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCC-CCcCCcCCCChhHeEEecCCC
Confidence 567889999766 67777788877 55555543110000001111000 0000 001111112455788877887
Q ss_pred EEEEec-C------CeEEEEECCCCCcceeEEeeccCccccc---ccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644 261 HLLSRD-Y------MNLKLWDIRMDSTPVATFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGSY 324 (421)
Q Consensus 261 ~l~~~~-~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~~~~l~~~s~ 324 (421)
++++.. . ..|+-++.. ++....+..+....... .....|..+ -+++++|+|+.|+++.+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEEC
Confidence 777753 2 456666653 66666554333221100 111222222 68999999997776654
No 419
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.20 E-value=16 Score=32.83 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=41.9
Q ss_pred ceEEEeecCCCCEEEEE-cC------CcEEEEeCCCCceeeeeeecCCC--------CCCccCCCeeEEEEecCCCCeEE
Q 014644 140 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA 204 (421)
Q Consensus 140 ~v~~l~~~~~~~~l~s~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~ 204 (421)
...+|++.+++.++++. .+ ..|..++.. +...+.+.+... .-........+++++|+| +.|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence 34567777889999988 77 778888866 444443322211 112244568899999999 7565
Q ss_pred EEE
Q 014644 205 YSS 207 (421)
Q Consensus 205 s~~ 207 (421)
++.
T Consensus 163 ~~~ 165 (326)
T PF13449_consen 163 AAM 165 (326)
T ss_pred EEE
Confidence 554
No 420
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.82 E-value=2.6 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=24.0
Q ss_pred CCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCc
Q 014644 257 NDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL 291 (421)
Q Consensus 257 ~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~ 291 (421)
|++++|.++. . ++|.++|..+ .+.+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5778777654 3 8999999976 7777776654433
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.51 E-value=13 Score=30.75 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=63.4
Q ss_pred CEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC---C---eEEEE-ECCccc
Q 014644 151 ETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---G---FVRLV-DMRQSA 221 (421)
Q Consensus 151 ~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---~---~v~iw-d~~~~~ 221 (421)
+.|+.+ ..+.|.+|++.... +....+ .--+.|..+.++..| .+|++--.+ . .+|+| +-+...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--------~Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--------STVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--------cchhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 455444 78889999998222 333332 123789999999999 999986533 2 56765 333221
Q ss_pred ccccchh-hhccccccCCCccc-------cc-ccccceeEEEEcCCCCEEEEecCCeEEEEECCC
Q 014644 222 LCDHSAR-ILRDAAESHGSKSF-------FT-EIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 277 (421)
Q Consensus 222 ~~~~~~~-~~~~h~~~~~~~~~-------~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~ 277 (421)
......+ .+.+|...+..... .. --...+.+++..|-..-|+.|+.+.+.||.+..
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 1111111 11121111110000 00 013467788888854455555557899998863
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.38 E-value=17 Score=34.12 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCCEEEE-ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--------CCEEEEeeCCCe
Q 014644 258 DGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--------GLHFATGSYSNL 327 (421)
Q Consensus 258 ~~~~l~~-~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--------~~~l~~~s~dg~ 327 (421)
|..+|.. |.. ..++--|+.. |+.+..+..+...+ +.|.|+ .+.|+.-|..+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddvv-----------------Vqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDVV-----------------VQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcce-----------------eecCCchhHHhcCccceEEeecccce
Confidence 4445544 444 7778888886 89999998887643 555553 345555555555
Q ss_pred EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccc-cccccccCeEEEEEccC
Q 014644 328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHE-LSYNLSSKLLHLAWHPT 404 (421)
Q Consensus 328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~-~~~~~~~~v~~~~~spd 404 (421)
.+| |-+-.+..+...+ ..+....-.|+.... ...+++|.++..|. +++ ..+.... .+-+....|-.+..+.+
T Consensus 540 FrI-DPR~~gNKi~v~e-sKdY~tKn~Fss~~t---TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 540 FRI-DPRARGNKIKVVE-SKDYKTKNKFSSGMT---TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred EEe-cccccCCceeeee-ehhcccccccccccc---ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence 554 4443323322222 223333333333211 12458999999999 999 3343333 33466788999999999
Q ss_pred CCeEEEecCCceEEE
Q 014644 405 TNLIACANGNSLFFH 419 (421)
Q Consensus 405 ~~~la~~~~~~~~i~ 419 (421)
|..|.+.+.+.|.+-
T Consensus 615 Gk~ilaTCk~yllL~ 629 (776)
T COG5167 615 GKHILATCKNYLLLT 629 (776)
T ss_pred CcEEEEeecceEEEE
Confidence 999999887776654
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.38 E-value=21 Score=33.09 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=80.6
Q ss_pred eEEEeecCCCCEEEEEcCCcEE-EEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644 141 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 141 v~~l~~~~~~~~l~s~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~ 219 (421)
...+..++++.+++.+..|.+. -||-- ........ ......+.++.|.+++ ..+++ +.+|.+. +....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~~------~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPHN------RASARRIQNMGWRADG-GLWLL-TRGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEec------CCCccceeeeeEcCCC-CEEEE-eCCceEE-EecCC
Confidence 4445667788888888555433 34332 11112211 2234568899999988 66654 4666654 33333
Q ss_pred ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccccc
Q 014644 220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 299 (421)
Q Consensus 220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+.... ...+.. ... ......+..+.|.+++..+++|..|.+....- .++.-...........
T Consensus 310 G~~~~--~~~f~~-~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------ 371 (398)
T PLN00033 310 GLTEE--DFDFEE-ADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------ 371 (398)
T ss_pred CCccc--ccceee-ccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence 32100 001111 000 00023588899999999999988776665542 2444333321111110
Q ss_pred CCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644 300 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 331 (421)
Q Consensus 300 ~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw 331 (421)
..+.+.|.++++.+++| .+|.|.-|
T Consensus 372 ------~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 372 ------NLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ------ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 11688888777666554 46776544
No 424
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.00 E-value=21 Score=32.63 Aligned_cols=152 Identities=9% Similarity=0.028 Sum_probs=78.8
Q ss_pred CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe--c-CCCCeEEEEEcCCeEEEEECCc---ccccccchhhhcc
Q 014644 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD 232 (421)
Q Consensus 159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~ 232 (421)
.+|++|.+......+..+.-....+......++.+|+- | ++..+++....+|.+..|.+.. +....+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46889987632223332210000011112346777763 3 3423566677889988887752 2233334455554
Q ss_pred ccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcce-eEEe-e-ccCcccccccccCCCcceeee
Q 014644 233 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFK-I-HEHLRPKLCDLYNNDSIFDKF 308 (421)
Q Consensus 233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+.+..+........|..+.+ .-|.-|+.+...... ..+. . ..... -++-
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~------------aDvE 260 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV------------ADVE 260 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EE
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc------------cCcc
Confidence 457888888887778888865 667777776422221 1111 1 11111 1334
Q ss_pred EEEEc--CCC-CEEEEee-CCCeEEEEecCCC
Q 014644 309 ECSVS--GDG-LHFATGS-YSNLLRIFSHGVG 336 (421)
Q Consensus 309 ~~~~s--p~~-~~l~~~s-~dg~i~iwd~~~~ 336 (421)
.+++- +++ .||++.+ .+++..+|+.+..
T Consensus 261 Glaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 261 GLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 56553 343 3565555 4778999998754
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.98 E-value=0.071 Score=48.61 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=83.6
Q ss_pred eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-
Q 014644 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY- 267 (421)
Q Consensus 190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~- 267 (421)
.....|-|.+ .-++.++.+..+..||-.. +... .... .+..-.++|.-++..++.. ..
T Consensus 37 pi~~~w~~e~-~nlavaca~tiv~~YD~ag-q~~l----e~n~--------------tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 37 PIIHRWRPEG-HNLAVACANTIVIYYDKAG-QVIL----ELNP--------------TGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred cceeeEecCC-CceehhhhhhHHHhhhhhc-ceec----ccCC--------------chhHhhhhhccccchhhhhhhcC
Confidence 3456788888 5688888888888888543 2111 1111 3456678888888877654 33
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 347 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 347 (421)
+.+.+||+.+.....-.+.+.... .=+.|++....++.|...|.+.|++..+. +.......|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhcccc
Confidence 899999997532221112221111 12589999889999999999999998876 3333333466
Q ss_pred CCccceeeecC
Q 014644 348 NENRKPILQAA 358 (421)
Q Consensus 348 ~~~~~~~~~~~ 358 (421)
-.+.+.++.+.
T Consensus 160 RRgtq~av~lE 170 (615)
T KOG2247|consen 160 RRGTQIAVTLE 170 (615)
T ss_pred cceeEEEeccc
Confidence 66666666554
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.67 E-value=8.1 Score=40.47 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=53.8
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeC----CCC---ceeeeeeecC-------C--CCCC-ccCCCeeEEEEecCCC
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNL----EIS---DQCFNIVDMK-------P--SNMD-DLTEVITSAEFHPIYC 200 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~----~~~---~~~~~~~~~~-------~--~~~~-~~~~~v~~~~~~p~~~ 200 (421)
.-.|+++....+|+.+++|.||. +|.+ ..+ .++.++...+ | ..+. .+.++|..++....-
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 45688999888999999996664 4443 211 1111111000 0 1233 567899999998776
Q ss_pred CeEEEEEcCCeEEEEECCcc
Q 014644 201 NLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~ 220 (421)
+.+++-+..++|++||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 88999999999999999873
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.34 E-value=4.7 Score=41.44 Aligned_cols=102 Identities=10% Similarity=-0.030 Sum_probs=65.9
Q ss_pred ceEEEeecCCCCE-EEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 140 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 140 ~v~~l~~~~~~~~-l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
-..++.|+|.-.. .+.. .|+.|++..+....+.+.. -......++++|+|.| +.++.|-..|++.-|-.
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence 3567788885332 3334 8999998887633332221 1245678999999999 99999999999988875
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 264 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (421)
.-.. . +.+.. .+... ...|.+|.|-..-.++++
T Consensus 228 ~lei-k----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 228 SLEI-K----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccce-e----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence 4321 0 11111 11111 467999999987777775
No 428
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.13 E-value=8.8 Score=30.80 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=23.2
Q ss_pred eeEEEEcCCC------CEEEEeeCCCeEEEEecCC
Q 014644 307 KFECSVSGDG------LHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 307 ~~~~~~sp~~------~~l~~~s~dg~i~iwd~~~ 335 (421)
+.+++|||.| -+|++-+.+|.|.||.-..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999943 3678888999999998664
No 429
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.50 E-value=2.4 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.8
Q ss_pred cCeEEEEEccCCCeEEEec
Q 014644 394 SKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 394 ~~v~~~~~spd~~~la~~~ 412 (421)
..-...+|||||+.|+-.+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 4556889999999999777
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.47 E-value=17 Score=30.02 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred eEEEEcCCCCEEEEecCCeEEEEECCC-CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---
Q 014644 251 SDIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--- 326 (421)
Q Consensus 251 ~~~~~s~~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg--- 326 (421)
..+.-+..+.++++.+...|.+|++.. ..+++.++..-.. |..+.++..|.||++--.+.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~ 84 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRS 84 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCc
Confidence 334444323343444447899999973 2445555543322 26899999999999865422
Q ss_pred ---eEEEE---ecCC-C-CCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCC-CccccccccccCeE
Q 014644 327 ---LLRIF---SHGV-G-SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS-GHHELSYNLSSKLL 397 (421)
Q Consensus 327 ---~i~iw---d~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~-~~~~~~~~~~~~v~ 397 (421)
.+|+| .... . ......+-||... ++.. .... .....-.....++.
T Consensus 85 ~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~----------------------~~~~----~~~~~qleiiElPl~~~p~ 138 (215)
T PF14761_consen 85 PVDFVRAYFNWRSQKEENSPVRVRIAGHRVT----------------------PSFN----ESSKDQLEIIELPLSEPPL 138 (215)
T ss_pred cceEEEEEEEhhhhcccCCcEEEEEcccccc----------------------cCCC----CccccceEEEEecCCCCCC
Confidence 45553 3221 1 1112222233110 0000 0000 01111224467788
Q ss_pred EEEEccCCCeEEEecCCceEEEe
Q 014644 398 HLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 398 ~~~~spd~~~la~~~~~~~~i~~ 420 (421)
+++-.|-.--|++|+.+.+.+|.
T Consensus 139 ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 139 CIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEEecCCCCCEEEEcCCEEEEEE
Confidence 99999998888999999999985
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.16 E-value=18 Score=34.04 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=62.6
Q ss_pred EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc
Q 014644 154 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 232 (421)
Q Consensus 154 ~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 232 (421)
+.| .+..|.--|.+..+..+.....+. ......-.|..-..+ .+++.++..|-|++||--..+.. ..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKd---Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta--- 598 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKD---YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA--- 598 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehh---ccccccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence 345 777776677775554444332211 111122233333333 58999999999999995442211 11
Q ss_pred ccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644 233 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 276 (421)
Q Consensus 233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~ 276 (421)
+++....|..+..+.+|+++++.+...+.+-|++
T Consensus 599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2223568899999999999988777788888875
No 432
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.07 E-value=5.8 Score=31.83 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=25.6
Q ss_pred CeeEEEEecCC-----CCeEEEEEcCCeEEEEECCc
Q 014644 189 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ 219 (421)
Q Consensus 189 ~v~~~~~~p~~-----~~~l~s~~~d~~v~iwd~~~ 219 (421)
.+.+++|||.| ..+|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999965 24788889999999998664
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.94 E-value=1.4 Score=43.88 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=82.1
Q ss_pred cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc--ccccccchhhhcccc
Q 014644 157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAA 234 (421)
Q Consensus 157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~h~ 234 (421)
..+.+++-+..+..+...+ +++..+.+..+.|-......+. -.-|.+.+||+.. |+.. ..+..|.
T Consensus 109 ~~~~vrvaN~~~sm~~~~l-------~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq----~~l~v~~ 175 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNEL-------AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ----PQLEVTP 175 (1283)
T ss_pred hhhhhhhccCcchhHHHHH-------HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc----cceEEee
Confidence 4566777776633321111 1566677777777543322222 3346788998764 2221 1122211
Q ss_pred ccCCCcccccccccceeEEEEcC---CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644 235 ESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC 310 (421)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+. ...+.-+.|.| +.-++..+.+ +.+++..+.+ .....+++|...+...+.+ +.+.+ .=-
T Consensus 176 ~~p~--------gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~-~~g~~---~l~ 241 (1283)
T KOG1916|consen 176 ITPY--------GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFF-AEGVL---KLA 241 (1283)
T ss_pred cCcC--------CCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHH-hhchh---hhe
Confidence 1111 22334555554 5666667755 8888877754 2224555666554332211 11111 012
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecC
Q 014644 311 SVSGDGLHFATGSYSNLLRIFSHG 334 (421)
Q Consensus 311 ~~sp~~~~l~~~s~dg~i~iwd~~ 334 (421)
..||||..++..+.||.++.|.+.
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeee
Confidence 489999999999999999888765
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.84 E-value=25 Score=31.20 Aligned_cols=189 Identities=15% Similarity=0.082 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644 148 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 227 (421)
Q Consensus 148 ~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 227 (421)
.++..++++..|.| |.....++..+.+. .+-.+.+..+.-+++| .++++++......-||--.
T Consensus 113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~~~------~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~-------- 175 (302)
T PF14870_consen 113 GDGSAELAGDRGAI--YRTTDGGKTWQAVV------SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ-------- 175 (302)
T ss_dssp ETTEEEEEETT--E--EEESSTTSSEEEEE-------S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred CCCcEEEEcCCCcE--EEeCCCCCCeeEcc------cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence 33444444444443 33332454444331 3334678888889999 8777776666666777543
Q ss_pred hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceee
Q 014644 228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 307 (421)
Q Consensus 228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+..|... -...|..+.|.|++.+.+.+..|.|+.=+... ....+..+.... ...-+.+
T Consensus 176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~---~~~~w~~~~~~~--------~~~~~~~ 235 (302)
T PF14870_consen 176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD---DGETWSEPIIPI--------KTNGYGI 235 (302)
T ss_dssp SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT---EEEEE---B-TT--------SS--S-E
T ss_pred ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCCC---CccccccccCCc--------ccCceee
Confidence 233333111 14579999999999887777668888887221 122222211110 0011123
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccc
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHE 387 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~ 387 (421)
.+++|.+++...++|+ .|.+. ...+.+ +. |..++.
T Consensus 236 ld~a~~~~~~~wa~gg-~G~l~-~S~DgG-kt---------------W~~~~~--------------------------- 270 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGG-SGTLL-VSTDGG-KT---------------WQKDRV--------------------------- 270 (302)
T ss_dssp EEEEESSSS-EEEEES-TT-EE-EESSTT-SS----------------EE-GG---------------------------
T ss_pred EEEEecCCCCEEEEeC-CccEE-EeCCCC-cc---------------ceECcc---------------------------
Confidence 7899999887777665 45443 233333 11 111100
Q ss_pred cccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644 388 LSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 419 (421)
Q Consensus 388 ~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~ 419 (421)
.......+..+.|.++.+-+|.|.++.|.=|
T Consensus 271 -~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 271 -GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 0011345678888888888888888877655
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.72 E-value=14 Score=36.59 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCCEEEEE-cCCcEEEEeCCC-------C----ceeeeeeecCCCCCCccCCCeeEEEEe--cCCCCeEEEEEcCCeEEE
Q 014644 149 DCETFVSA-DDLRINLWNLEI-------S----DQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRL 214 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~d~~v~i 214 (421)
+.+.|+.+ +||.|.+|.++. . ........++|.-...-...+++++++ ... ++||.++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence 55677778 999999997631 0 000000112221112234578999998 665 78888888888888
Q ss_pred EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-----C-EEEEecC-CeEEEEEC
Q 014644 215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKLWDI 275 (421)
Q Consensus 215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~~~~~-~~i~i~d~ 275 (421)
|-+........... . ..+...|.+|+|-++. . .+++++- |.+.+|++
T Consensus 192 Faf~l~~~r~~~~~---s-----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVP---S-----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecccccccccc---c-----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 76554211000000 0 0135578899997753 2 4555554 88888777
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.14 E-value=16 Score=38.48 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=51.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCeEEEEECC--CC-C---cceeEEeecc----Cccccccc--ccCCCcceeeeEEEEcC
Q 014644 247 IASISDIKFANDGQHLLSRDYMNLKLWDIR--MD-S---TPVATFKIHE----HLRPKLCD--LYNNDSIFDKFECSVSG 314 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~--~~-~---~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~sp 314 (421)
...|+++....+|+.+++|.+| .+|.+. .. + +....+.... ..++.+.. ..+.+.| ..+....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI---~qi~ID~ 252 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI---RQITIDN 252 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc---eeeEecc
Confidence 3578899988899999999887 445442 10 1 1000010000 00111111 1223344 6888888
Q ss_pred CCCEEEEeeCCCeEEEEecCCC
Q 014644 315 DGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
..+.+.+-++.|+|.+|++...
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccceeeeeccCceEEEEEccCC
Confidence 8888999999999999999873
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=84.25 E-value=32 Score=31.13 Aligned_cols=149 Identities=7% Similarity=-0.042 Sum_probs=77.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644 247 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 326 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg 326 (421)
...+..+.+.|++.+++++..|.+..- .+..++.-......... .+.++.+.|+++.+++| ..|
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~--------------~l~~i~~~~~g~~~~vg-~~G 235 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSR--------------RLQSMGFQPDGNLWMLA-RGG 235 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcc--------------cceeeeEcCCCCEEEEe-cCC
Confidence 356889999999988888877655432 11112222222221111 12688999999877665 457
Q ss_pred eEEEEecCCCCCceeEEec----CCCCccceeeecCCcccccccceeeeecccCcccC--CCCCccccc---cccccCeE
Q 014644 327 LLRIFSHGVGSAGGITVEA----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHELS---YNLSSKLL 397 (421)
Q Consensus 327 ~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~~~~~~~~~---~~~~~~v~ 397 (421)
.+++=..+.+ ..-..... ....+..+.+.+. +. .++ .+.+|..+. +.++.-... ........
T Consensus 236 ~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~--~~-----~~~-~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~ 306 (334)
T PRK13684 236 QIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTP--GE-----IWA-GGGNGTLLVSKDGGKTWEKDPVGEEVPSNFY 306 (334)
T ss_pred EEEEccCCCC-CccccccCCccccccceeeEEEcCC--CC-----EEE-EcCCCeEEEeCCCCCCCeECCcCCCCCcceE
Confidence 6653222322 11111111 1122344555544 22 333 333443222 111111111 12234678
Q ss_pred EEEEccCCCeEEEecCCceEEEe
Q 014644 398 HLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 398 ~~~~spd~~~la~~~~~~~~i~~ 420 (421)
.+.|..+++.+++|..+.|.-|+
T Consensus 307 ~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 307 KIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EEEEeCCCceEEECCCceEEEec
Confidence 88999889999999888887664
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.63 E-value=32 Score=32.58 Aligned_cols=83 Identities=8% Similarity=0.075 Sum_probs=49.0
Q ss_pred cceEEEeecCCCCEEEEE-cCCcEEEEeCCC--------Ccee---eeeeecCCCCCC-ccCCCeeEEEEecCC--CCeE
Q 014644 139 FNINSISNNSDCETFVSA-DDLRINLWNLEI--------SDQC---FNIVDMKPSNMD-DLTEVITSAEFHPIY--CNLL 203 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~--------~~~~---~~~~~~~~~~~~-~~~~~v~~~~~~p~~--~~~l 203 (421)
-.|..+..++.|..++-+ .+|.+.++=.+. .++. -+++.+...-+. ...-.+..++|+|+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 357777788888877765 777655443110 1111 111111111111 112346678999986 4677
Q ss_pred EEEEcCCeEEEEECCccc
Q 014644 204 AYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 204 ~s~~~d~~v~iwd~~~~~ 221 (421)
+.-+.|..+|+||+...+
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 788899999999998754
No 439
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.22 E-value=11 Score=34.81 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=84.1
Q ss_pred cccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee-EEEEcCCCCEEEEeeC
Q 014644 246 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSY 324 (421)
Q Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~~l~~~s~ 324 (421)
....+..+-..|||+.+..-+..++.++++.+..-...++...... |..-.|+ .+..-..|.-+..++.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg----------~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG----------DSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC----------chHHHHHHHHHHHhCceeEEEEcC
Confidence 3567888899999999887766789999987522222222111000 0000001 1112235666888899
Q ss_pred CCeEEEE-ecCCCCCc-eeEEecCC-CCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccccccccccCeEEE
Q 014644 325 SNLLRIF-SHGVGSAG-GITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHL 399 (421)
Q Consensus 325 dg~i~iw-d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~ 399 (421)
||.|.-| |++.+... ....+..+ .+...-...|+...+ -+++-+..|. ..+ +..+...-....-..+..+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-----gF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-----GFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccc-----eEEEEcCCCceeeeecccCcceehhhhhcCccee
Confidence 9988776 55443221 11111111 111111222332222 4555556666 444 2222222111222356678
Q ss_pred EEccCCCeEEEecCCceEEEe
Q 014644 400 AWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 400 ~~spd~~~la~~~~~~~~i~~ 420 (421)
++||.+.+|++-..+++.++.
T Consensus 364 ~~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 364 AMSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eeCcccchheeecCCceEEEE
Confidence 999999999999888888875
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.57 E-value=0.28 Score=44.93 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=93.1
Q ss_pred CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644 137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 215 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw 215 (421)
+-.......|-|.+.-++.+ .+..+..||-. ++..-- -..+.....++|.-+++..++.+...+.+.+|
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le--------~n~tg~aldm~wDkegdvlavlAek~~piylw 102 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILE--------LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLW 102 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh--cceecc--------cCCchhHhhhhhccccchhhhhhhcCCCeeec
Confidence 33334456677776667776 88899999976 333211 12345567788888886777778888999999
Q ss_pred ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644 216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK 294 (421)
Q Consensus 216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 294 (421)
|+.+... ..++. +....-.-+.|++.+..++.+.. +.+.|++..+ .+.....-.|....
T Consensus 103 d~n~eyt-----qqLE~------------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRg-- 162 (615)
T KOG2247|consen 103 DVNSEYT-----QQLES------------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRG-- 162 (615)
T ss_pred hhhhhhH-----HHHhc------------cCcchHHHHhhccCCccccccccccceEEEeccc-hhhhhhhcccccce--
Confidence 9987431 11211 00122233789998888888876 9999999876 33222222233322
Q ss_pred cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEE
Q 014644 295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 329 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~ 329 (421)
+..++.+.+.. +.++.|..+.
T Consensus 163 -------------tq~av~lEd~v-il~dcd~~L~ 183 (615)
T KOG2247|consen 163 -------------TQIAVTLEDYV-ILCDCDNTLS 183 (615)
T ss_pred -------------eEEEeccccee-eecCcHHHHH
Confidence 57888887654 4455554443
No 441
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.56 E-value=6.6 Score=22.05 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=19.4
Q ss_pred CCcceEEEeecCCCCEEEEE--cC--CcEEEE
Q 014644 137 HDFNINSISNNSDCETFVSA--DD--LRINLW 164 (421)
Q Consensus 137 h~~~v~~l~~~~~~~~l~s~--~d--~~i~lw 164 (421)
....-....|+|||+.|+-+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44456788999999988874 55 666665
No 442
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.63 E-value=52 Score=31.67 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=18.3
Q ss_pred CCeEEEEeCCCcEEEeecCCcee
Q 014644 47 GSMFILSTNDKTIKLWKVRDQKV 69 (421)
Q Consensus 47 ~~~l~t~s~d~~v~lwd~~~~~~ 69 (421)
+..+..++.++.|.-.|..+++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~ 83 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV 83 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh
Confidence 45667778889999999988873
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.52 E-value=41 Score=31.76 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=24.7
Q ss_pred cceeEEEEcCCCCEEEEecC-CeEEEEECCC
Q 014644 248 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM 277 (421)
Q Consensus 248 ~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~ 277 (421)
.....|+|.|||++|++-.. |.|++++...
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 45689999999999998874 9999998643
No 444
>PRK10115 protease 2; Provisional
Probab=81.02 E-value=66 Score=32.52 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=61.9
Q ss_pred cceEEEeecCCCCEEEEE-c-C----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC---
Q 014644 139 FNINSISNNSDCETFVSA-D-D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--- 209 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~-d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--- 209 (421)
-.+..+.++|||++|+.+ + + ..|++-|+.+ +..+.. .+. ..-..++|.+|+ ..|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~------~i~---~~~~~~~w~~D~-~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPE------LLD---NVEPSFVWANDS-WTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCc------ccc---CcceEEEEeeCC-CEEEEEEecCCC
Confidence 346778899999999986 3 2 3577888873 332110 111 112568999998 555554432
Q ss_pred ---CeEEEEECCcccccccchhhhccccccCCCccccccccccee-EEEEcCCCCEEEEe--c-C-CeEEEEECC
Q 014644 210 ---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR--D-Y-MNLKLWDIR 276 (421)
Q Consensus 210 ---~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~--~-~-~~i~i~d~~ 276 (421)
..|..+++.++...+ ..++.. ...... .+..+.++++++.. + . +.+.+++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d--~lv~~e-------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD--ELVYEE-------------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCEEEEEECCCChhHC--eEEEee-------------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 256666776652111 122222 012222 33344488877643 2 2 678888854
No 445
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.80 E-value=52 Score=34.76 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=30.8
Q ss_pred ccccccccc--cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce
Q 014644 24 FDYLKSLEI--EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 68 (421)
Q Consensus 24 ~~~~~~~~h--~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~ 68 (421)
|++.+...| ...-..++| ++...++|.+...|.|+++-...-+
T Consensus 24 f~~~~~~~~G~~~~~~~~af--D~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 24 FAFDKTNRHGFPSTPSALAF--DPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred cccccceecCCCCCCcceee--ccccceEEEEEecccEEEecccceE
Confidence 344444444 345566666 7889999999999999999866544
No 446
>PHA02713 hypothetical protein; Provisional
Probab=78.05 E-value=73 Score=31.28 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=17.5
Q ss_pred CCCEEEEeeCCC--eEEEEecCCC
Q 014644 315 DGLHFATGSYSN--LLRIFSHGVG 336 (421)
Q Consensus 315 ~~~~l~~~s~dg--~i~iwd~~~~ 336 (421)
+++..++|+.+| .+..||..+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 778888898888 6777887765
No 447
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.22 E-value=78 Score=31.17 Aligned_cols=22 Identities=9% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCCEEEEeeCCCe-----EEEEecCCC
Q 014644 315 DGLHFATGSYSNL-----LRIFSHGVG 336 (421)
Q Consensus 315 ~~~~l~~~s~dg~-----i~iwd~~~~ 336 (421)
++...+.|+.|+. |..||..+.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCC
Confidence 5677777877763 667777665
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.04 E-value=11 Score=36.71 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=40.1
Q ss_pred CCCCEEEEE-cCCcEEEEeCCC---CceeeeeeecCCC-------CC--------CccCCCeeEEEEec----CCCCeEE
Q 014644 148 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS-------NM--------DDLTEVITSAEFHP----IYCNLLA 204 (421)
Q Consensus 148 ~~~~~l~s~-~d~~i~lwd~~~---~~~~~~~~~~~~~-------~~--------~~~~~~v~~~~~~p----~~~~~l~ 204 (421)
++...++.+ .||.+....... .+..+........ .+ ......+.+++.++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 355666666 888887777663 2222222111110 00 01123455566666 44 8999
Q ss_pred EEEcCCeEEEEECCcccc
Q 014644 205 YSSSRGFVRLVDMRQSAL 222 (421)
Q Consensus 205 s~~~d~~v~iwd~~~~~~ 222 (421)
+.+.|+.+|+||+.+++.
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999999876
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.61 E-value=31 Score=26.18 Aligned_cols=63 Identities=6% Similarity=0.105 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC--CCeEEEEEcCCeEEEEECCcc
Q 014644 149 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQS 220 (421)
Q Consensus 149 ~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~d~~v~iwd~~~~ 220 (421)
+...|+.|...+|..||+..+...+. +.-.+.|.++.+-.-+ +.-++..+.+..|.-||....
T Consensus 63 ~~D~LliGt~t~llaYDV~~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 63 GRDCLLIGTQTSLLAYDVENNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred CcCEEEEeccceEEEEEcccCchhhh---------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 46688889888999999985554432 2234566776663211 144566666778888876553
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=90 Score=31.20 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=31.3
Q ss_pred ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEee
Q 014644 247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 287 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~ 287 (421)
.+.+..+..||+.++|+-=++ |.|.+-+... .+.+..+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~ 256 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNC 256 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCC
Confidence 357889999999999987666 9999988875 666666653
No 451
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.38 E-value=49 Score=27.90 Aligned_cols=99 Identities=5% Similarity=0.063 Sum_probs=61.4
Q ss_pred cceeEEEEcCCCCEEEEecC--CeEEEEECCCC-Cc-----ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644 248 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMD-ST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 319 (421)
Q Consensus 248 ~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 319 (421)
.--+.++|+.+.+.+..-+. -.|.-||..-+ +. .+..++..+...... . -.++...+|.+.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-----P------DGm~ID~eG~L~ 226 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-----P------DGMTIDTEGNLY 226 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-----C------CcceEccCCcEE
Confidence 34568899988877665432 66766874321 22 122222111100000 0 256667788888
Q ss_pred EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644 320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358 (421)
Q Consensus 320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
++.-..|+|...|..++ +.+..+.-....+++.+|-..
T Consensus 227 Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCC
Confidence 88888899999999998 666777767888888888654
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=73.41 E-value=81 Score=29.53 Aligned_cols=113 Identities=14% Similarity=0.205 Sum_probs=62.9
Q ss_pred cCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-----CCCEEEEecCCeEE
Q 014644 197 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHLLSRDYMNLK 271 (421)
Q Consensus 197 p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~ 271 (421)
+++...|+.||..|.++||+...+...... ..++ ..-..+|-.+..-. +...||.-.-..+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~-lllE------------~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~ 100 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPED-LLLE------------TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLS 100 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCcc-EEEE------------EecCCcEEEEEeccccCCCCcceEEEecCCEEE
Confidence 334468999999999999998654321110 1111 11245676666542 23355554447888
Q ss_pred EEECCCC-Cc-------ceeEEeeccCcccccccccCCCcceeeeEEEEcC----C-CCEEEEeeCCCeEEEEecCC
Q 014644 272 LWDIRMD-ST-------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----D-GLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 272 i~d~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----~-~~~l~~~s~dg~i~iwd~~~ 335 (421)
+|.+... +. .+.....|.-.. ...+++.-| . ..+|++-+.||.+.+++-+.
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~-------------~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~ 164 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQR-------------TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES 164 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEeccc-------------ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence 8887421 11 122222222111 013455444 1 35788899999999999664
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.79 E-value=86 Score=29.17 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=66.3
Q ss_pred CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCcee-----eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644 138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 212 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v 212 (421)
...+.++.+.+++..++++.+|.+.. ... .++. +... ........+.++.|.+++ . ++.++.+|.+
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v 350 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKG-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSGIL 350 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecC-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCCcE
Confidence 45678899999999998887777543 332 2221 1111 111122458889999876 5 4556677766
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEE
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 273 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~ 273 (421)
.... ..++ .|.. .... .........+.|.++++.+++|.+|.|.-|
T Consensus 351 ~~s~-D~G~-------tW~~-~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 351 LRST-DGGK-------SWKR-DKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EEeC-CCCc-------ceeE-cccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 5543 3332 2221 0000 011346789999988999999988876554
No 454
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=71.10 E-value=1.3e+02 Score=30.90 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc-------ccccccccceeEEEEcCCCC
Q 014644 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-------SFFTEIIASISDIKFANDGQ 260 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~v~~~~~s~~~~ 260 (421)
..|.+++...-+ ..++.+-.||+|.++|..+.+..... .... ..+... ..|+.. ..+.-++|||++.
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~--~~~~--~~~~~v~s~~~~Gf~fp~~-~~~~~vafSPt~c 333 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET--RTNG--EPPNTVTSLFQAGFHFPCI-QPPLHVAFSPTMC 333 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc--cccc--CCccccccccccccccccC-CCCceEEECcccc
Confidence 456677766666 78889999999999998876443211 0000 111100 011111 1455688999988
Q ss_pred EEEEecC-CeEE
Q 014644 261 HLLSRDY-MNLK 271 (421)
Q Consensus 261 ~l~~~~~-~~i~ 271 (421)
-++.-.. +.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 7776543 6644
No 455
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=69.71 E-value=1.7e+02 Score=31.66 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=38.0
Q ss_pred eeEEEEcCCCCEEEEecC-CeE-EEEECCCCCcceeEEeeccCcccc----cccccC------CCcce-eeeEEEEcCCC
Q 014644 250 ISDIKFANDGQHLLSRDY-MNL-KLWDIRMDSTPVATFKIHEHLRPK----LCDLYN------NDSIF-DKFECSVSGDG 316 (421)
Q Consensus 250 v~~~~~s~~~~~l~~~~~-~~i-~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~-~~~~~~~sp~~ 316 (421)
..+++++++|.+.++-+| ..| ++-.+.+.+ .+..+.+......- -|++++ .++.+ ...++|.+|||
T Consensus 595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg 673 (1899)
T KOG4659|consen 595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDG 673 (1899)
T ss_pred hhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCC
Confidence 378999999988887665 222 333333434 45555554433211 122222 22221 23577888888
Q ss_pred CEEEEe
Q 014644 317 LHFATG 322 (421)
Q Consensus 317 ~~l~~~ 322 (421)
..+++-
T Consensus 674 ~v~IAD 679 (1899)
T KOG4659|consen 674 DVIIAD 679 (1899)
T ss_pred cEEEec
Confidence 765543
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.68 E-value=71 Score=27.31 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred eEEEEecCCCCeEEEEEc-C--CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644 191 TSAEFHPIYCNLLAYSSS-R--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 267 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~-d--~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (421)
.+-.+.||| ++|.+|+. + ..+++++....... ..|.. .+.. + .....-.....-|||+.|+.|+.
T Consensus 70 Sgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~----~~w~e---~~~~---m-~~~RWYpT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 70 SGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGT----CDWTE---SPND---M-QSGRWYPTATTLPDGRVLIVGGS 137 (243)
T ss_pred cCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCC----CCceE---Cccc---c-cCCCccccceECCCCCEEEEeCc
Confidence 344678999 88888873 2 35778876540000 01111 0000 0 00234445666789999988754
Q ss_pred --CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 268 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 268 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+..+|.-+........+....... . ......| --+...|+|++++.+..+.. |||..+.
T Consensus 138 ~~~t~E~~P~~~~~~~~~~~~~l~~~~----~-~~~~nlY--P~~~llPdG~lFi~an~~s~--i~d~~~n 199 (243)
T PF07250_consen 138 NNPTYEFWPPKGPGPGPVTLPFLSQTS----D-TLPNNLY--PFVHLLPDGNLFIFANRGSI--IYDYKTN 199 (243)
T ss_pred CCCcccccCCccCCCCceeeecchhhh----c-cCccccC--ceEEEcCCCCEEEEEcCCcE--EEeCCCC
Confidence 5566666432111111111000000 0 0001111 35678899999988876554 4576655
No 457
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=69.31 E-value=25 Score=31.16 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644 249 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 327 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~ 327 (421)
-++++...++|.+|++... ..|.+.|.++ ++.+-.+.+....-..+ . -..+++-.+-+++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~-----~-----~~~f~~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL-----P-----ATNFSWQHDARFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc-----c-----CCcEeeccCCEEeccCCCCCE
Confidence 4788888899999999877 9999999886 88888886662211000 0 023555556666666677889
Q ss_pred EEEEecC
Q 014644 328 LRIFSHG 334 (421)
Q Consensus 328 i~iwd~~ 334 (421)
|.++|-.
T Consensus 214 IslFDN~ 220 (299)
T PF14269_consen 214 ISLFDNA 220 (299)
T ss_pred EEEEcCC
Confidence 9999863
No 458
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.98 E-value=16 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=26.6
Q ss_pred EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644 206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 266 (421)
Q Consensus 206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (421)
+..+|.+.-||..+++.. .+++. -.-.+.+++++|+.+++.+.
T Consensus 33 ~~~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEe
Confidence 345677788888876532 22222 34578999999999888763
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=68.81 E-value=83 Score=27.75 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=81.8
Q ss_pred cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC----CeEEEEE-cCCeEEEEECCcccccccchhhhcccc
Q 014644 160 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAA 234 (421)
Q Consensus 160 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~ 234 (421)
+|.+||+. +.+.++.+.+.+.... ....+..+.+..... .+++.+. ..+.|.++|+.+++.. +.... .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence 57788988 5567777766544444 445677888876321 2333333 4468999999997654 22221 1
Q ss_pred ccCCC--c------ccccccccceeEEEEcC---CCCEEEEecCCeEEEEECCC-----CC----c----ceeEEeeccC
Q 014644 235 ESHGS--K------SFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRM-----DS----T----PVATFKIHEH 290 (421)
Q Consensus 235 ~~~~~--~------~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~i~i~d~~~-----~~----~----~~~~~~~~~~ 290 (421)
..+.. . ..+. ....+..++.+| +|+.|.-..-..-++|.+.+ .. . .++.+ +...
T Consensus 108 ~~~~p~~~~~~i~g~~~~-~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~ 185 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQ-WPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG 185 (287)
T ss_dssp CTTS-SSEEEEETTEEEE-ETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE--
T ss_pred cceeccccceeccCceEe-cCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccC
Confidence 11111 0 0111 123377777766 77777765433334554422 00 0 11122 1111
Q ss_pred cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~ 335 (421)
.. ...++++++|.+.++--..+.|..|+...
T Consensus 186 ~~--------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 SQ--------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -S--------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CC--------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 00 04788999998888888899999999876
No 460
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=67.72 E-value=86 Score=27.53 Aligned_cols=118 Identities=12% Similarity=-0.011 Sum_probs=66.9
Q ss_pred CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644 138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 216 (421)
Q Consensus 138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd 216 (421)
.+-+..+.++ +++...+ .+.-+++.|+.+.......- .+. -.+.-+++. -.| ++.+.+..|.-+.+.|
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~-----~ln-t~gyaygv~--vsG-n~aYVadlddgfLivd 154 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIG-----FLN-TDGYAYGVY--VSG-NYAYVADLDDGFLIVD 154 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceec-----ccc-CCceEEEEE--ecC-CEEEEeeccCcEEEEE
Confidence 3445666675 5677777 78889999998554433221 111 113334443 346 7788787666677889
Q ss_pred CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcce
Q 014644 217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV 282 (421)
Q Consensus 217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~ 282 (421)
+.+.+.. .+.+ .+.........++.| |++...+. ++-+.|-|+..+..++
T Consensus 155 vsdpssP-----~lag---------rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 155 VSDPSSP-----QLAG---------RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred CCCCCCc-----eeee---------eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCe
Confidence 8775421 1111 011112233566666 55555553 4779999997655554
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=66.90 E-value=1.6e+02 Score=30.35 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred eecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC-ccCCCeeEEEEe-
Q 014644 120 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFH- 196 (421)
Q Consensus 120 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~- 196 (421)
+........++-.+..|..+.+..|+.-.....-... .+..+++--+. ......+ . ....+|..|+|.
T Consensus 19 ~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~w-------~i~~~~PI~qI~fa~ 89 (765)
T PF10214_consen 19 DLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTID--PELSGAW-------SIDDGSPIKQIKFAT 89 (765)
T ss_pred cCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCC--cccccee-------EcCCCCCeeEEEecc
Q ss_pred ------cCCCCeEEEEEcCCeEEEE----------ECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CC
Q 014644 197 ------PIYCNLLAYSSSRGFVRLV----------DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DG 259 (421)
Q Consensus 197 ------p~~~~~l~s~~~d~~v~iw----------d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~ 259 (421)
+.. ..|+.-....+..+- +..........+..+..+ .....+...++|+| +.
T Consensus 90 ~~~~~~~~~-~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~----------~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 90 LSESFDEKS-RWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS----------DTGGFPHADVAFNPWDQ 158 (765)
T ss_pred cccccCCcC-cEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh----------hcCCCccceEEeccCcc
Q ss_pred CEEEEecC-CeEEEEEC-CCCCcceeEEeeccCccccc-ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 260 QHLLSRDY-MNLKLWDI-RMDSTPVATFKIHEHLRPKL-CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 260 ~~l~~~~~-~~i~i~d~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+.||.-+. |...||++ .........+.........+ .+..+.+.. ..+.|.++...|+.++. ..+.++|+.+.
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w---~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNW---KRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcc---eeeEecCCCCEEEEEcC-CceEEEECCCC
Q ss_pred CCce-eEEecCCCCccceeeecCCcccccccceeee
Q 014644 337 SAGG-ITVEAGKNENRKPILQAAPRARRSSLSNLTR 371 (421)
Q Consensus 337 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (421)
.... .........+..+.-++..+... ++.|
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~----FiLT 266 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHV----FILT 266 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceE----EEEe
No 462
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=76 Score=26.30 Aligned_cols=187 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCC--cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644 46 NGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 123 (421)
Q Consensus 46 ~~~~l~t~s~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 123 (421)
++.++.+.+.-| .|++||+.+++........ ++.++.--...-...+..+.+....++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~--------------- 118 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDA--------------- 118 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEECh---------------
Q ss_pred cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCC
Q 014644 124 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYC 200 (421)
Q Consensus 124 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~ 200 (421)
...+.+ ..+...=..=....|++.|..+ ...+++.-|.+ .-.....+ .......+|.-+-=-. +|
T Consensus 119 ----~t~~~l-g~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~-tfa~~~~v-----~VT~~g~pv~~LNELE~VdG- 186 (262)
T COG3823 119 ----DTLEEL-GRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPK-TFAELDTV-----QVTDDGVPVSKLNELEWVDG- 186 (262)
T ss_pred ----HHhhhh-cccccCCcceeeecCCcceEeeCCceEEEecCHH-HhhhcceE-----EEEECCeecccccceeeecc-
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEe
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 265 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~ 265 (421)
...|-.=.+..|...|..+|+.. ..++. ..-......-..+.+-.+.+++.|++ +++++|
T Consensus 187 ~lyANVw~t~~I~rI~p~sGrV~----~widl-S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSGRVV----AWIDL-SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEeeeeecceEEEcCCCCcEE----EEEEc-cCCchhcCccccccccccceeecCcCCeEEEec
No 463
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.14 E-value=91 Score=31.58 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=48.3
Q ss_pred cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
...+|.+.++..| ++.++.+|.|.++...+.... .....| ..|...|+.+....+|-+++..
T Consensus 625 g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah----------qee~~~Vthm~~~~~gVwvafa 686 (925)
T KOG3522|consen 625 GSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH----------QEEAHSVTHMLYLDNGVWVAFA 686 (925)
T ss_pred CCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH----------HhhcceEEEEEeeCCceEEEEc
Confidence 4467888877754 456788999999988765432 112221 2235689999999888777766
Q ss_pred cCCeEEEEECCC
Q 014644 266 DYMNLKLWDIRM 277 (421)
Q Consensus 266 ~~~~i~i~d~~~ 277 (421)
+...++.++..+
T Consensus 687 sG~~~rlfhtet 698 (925)
T KOG3522|consen 687 SGDEERLFHTET 698 (925)
T ss_pred CCCEEEEecccc
Confidence 545666666543
No 464
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=64.85 E-value=95 Score=27.00 Aligned_cols=158 Identities=9% Similarity=0.013 Sum_probs=88.2
Q ss_pred cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644 139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 217 (421)
Q Consensus 139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~ 217 (421)
..-+.++-.|||..-.++ ..+.|--.|..+ ++.. .+. -+....-..+..-||| ..-++-+.. .|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~-~yp------Lg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVE-TYP------LGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCC-CceE-EEe------cCCCCCCceEEECCCC-CeeEecCcc-eeEEecC
Confidence 345677888899888887 777777777773 3222 221 1233445667778888 444432222 4444454
Q ss_pred CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644 218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297 (421)
Q Consensus 218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
++... ..|.. . .+-.........|.+.|.+-+++..|.-- .++.....++.+....+..+
T Consensus 132 kt~ev-----t~f~l-p--------~~~a~~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaPqG~gp---- 191 (353)
T COG4257 132 KTLEV-----TRFPL-P--------LEHADANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAPQGGGP---- 191 (353)
T ss_pred cccce-----EEeec-c--------cccCCCcccceeeCCCccEEEeeccccce--ecCcccCceeeeccCCCCCC----
Confidence 44332 11211 0 01114567788999999988887532111 22222344555555443321
Q ss_pred ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
..+|..|+|..-++.-.++.|-..|-.++
T Consensus 192 ----------yGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 192 ----------YGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ----------cceEECCCCcEEEEeccccceEEcccccC
Confidence 57888999887776556666665555444
No 465
>PHA03098 kelch-like protein; Provisional
Probab=64.62 E-value=1.4e+02 Score=29.00 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCEEEEeeCC-----CeEEEEecCCC
Q 014644 315 DGLHFATGSYS-----NLLRIFSHGVG 336 (421)
Q Consensus 315 ~~~~l~~~s~d-----g~i~iwd~~~~ 336 (421)
+++.++.|+.+ +.+.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 66666677654 46778887754
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=64.60 E-value=28 Score=24.14 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=23.7
Q ss_pred cceeEEEEcCCCCEEEEecC--CeEEEEECC
Q 014644 248 ASISDIKFANDGQHLLSRDY--MNLKLWDIR 276 (421)
Q Consensus 248 ~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~ 276 (421)
...+.|.++|++++|..++- +.|++|..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35689999999999987753 889999875
No 467
>PRK10115 protease 2; Provisional
Probab=64.47 E-value=1.7e+02 Score=29.72 Aligned_cols=113 Identities=7% Similarity=0.023 Sum_probs=64.5
Q ss_pred CCeeEEEEecCCCCeEEEEE-cC----CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644 188 EVITSAEFHPIYCNLLAYSS-SR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262 (421)
Q Consensus 188 ~~v~~~~~~p~~~~~l~s~~-~d----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (421)
-.+..+.++|++ ++|+.+. .+ ..|++.|+.++.... ..+.. .-..++|.+|++.|
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~---~~i~~----------------~~~~~~w~~D~~~~ 186 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYP---ELLDN----------------VEPSFVWANDSWTF 186 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCC---ccccC----------------cceEEEEeeCCCEE
Confidence 346678899999 7776653 22 368888888764221 11111 11469999999877
Q ss_pred EEe-cC------CeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEE
Q 014644 263 LSR-DY------MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIF 331 (421)
Q Consensus 263 ~~~-~~------~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iw 331 (421)
+.. .+ ..|+.+++.+.. +-...+....... . .....+.++++++..+. ++.+.++
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~-------------~-~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTF-------------Y-VSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCE-------------E-EEEEEcCCCCEEEEEEECCccccEEEE
Confidence 643 21 467788887631 2233343322211 0 13344558887664443 4578888
Q ss_pred ecC
Q 014644 332 SHG 334 (421)
Q Consensus 332 d~~ 334 (421)
+..
T Consensus 253 ~~~ 255 (686)
T PRK10115 253 DAE 255 (686)
T ss_pred ECc
Confidence 853
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=64.15 E-value=1.7e+02 Score=29.69 Aligned_cols=71 Identities=13% Similarity=-0.004 Sum_probs=41.3
Q ss_pred eEEEEecCCCCeEEEEEcCC-----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644 191 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265 (421)
Q Consensus 191 ~~~~~~p~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (421)
..+.|-|+| ..+++-..|| .|.++....-+ .. .++. -......+..++|+-....++.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLr-HG----ef~l----------r~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLR-HG----EFDL----------RVGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcc-cC----Cccc----------cCCchhhhhhhhhhHHHHHHHHh
Confidence 457899999 8888876554 34444422211 00 0100 01113456677777766666666
Q ss_pred cCCeEEEEECCC
Q 014644 266 DYMNLKLWDIRM 277 (421)
Q Consensus 266 ~~~~i~i~d~~~ 277 (421)
..+.+++|-..+
T Consensus 314 ~~n~~~lwttkN 325 (1243)
T COG5290 314 EGNLLKLWTTKN 325 (1243)
T ss_pred hcceEEEEEccc
Confidence 557899998754
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=63.49 E-value=64 Score=24.54 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=60.3
Q ss_pred eecCCCCEEEEE-cCCcEEEEeCCCCce-------eeeeeecCCCCCCccCCCeeEEE---EecC-CCCeEEEEEcCCeE
Q 014644 145 SNNSDCETFVSA-DDLRINLWNLEISDQ-------CFNIVDMKPSNMDDLTEVITSAE---FHPI-YCNLLAYSSSRGFV 212 (421)
Q Consensus 145 ~~~~~~~~l~s~-~d~~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~---~~p~-~~~~l~s~~~d~~v 212 (421)
.|......|+++ .-++|.|++...... .++.+ .-...|++++ |.|+ +...|+.|+ ...|
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--------Nin~~italaaG~l~~~~~~D~LliGt-~t~l 75 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--------NINQEITALAAGRLKPDDGRDCLLIGT-QTSL 75 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--------ECCCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence 455555677777 888888888763221 22222 1234566664 4333 224555554 5578
Q ss_pred EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC----CCCEEEEecCCeEEEEECC
Q 014644 213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN----DGQHLLSRDYMNLKLWDIR 276 (421)
Q Consensus 213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~~~i~i~d~~ 276 (421)
..||+....-. |.. .-...++++.+-. +..+++.|+...|.-||..
T Consensus 76 laYDV~~N~d~------Fyk------------e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 76 LAYDVENNSDL------FYK------------EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred EEEEcccCchh------hhh------------hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 99999876422 111 1134566666632 3556777766778888875
No 470
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=62.97 E-value=50 Score=33.83 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=35.2
Q ss_pred ccceeEEEEcCCCCEEEEe-c-----C-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644 247 IASISDIKFANDGQHLLSR-D-----Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 294 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~-~-----~-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 294 (421)
..++..-+|||||+.|+-+ + . ..|++-++++.+.-+-.+......+++
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr 403 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR 403 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc
Confidence 5688899999999999873 2 1 359999998866665666666655543
No 471
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=60.90 E-value=1.2e+02 Score=26.86 Aligned_cols=59 Identities=5% Similarity=0.099 Sum_probs=40.6
Q ss_pred EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC------CCCEEEEeeCCCeEEEEecCCC
Q 014644 264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+.. |.|-+||+. +..++++....... .. +.++..| .|.+|+---.||+|..+|..++
T Consensus 217 ~G~G~G~VdvFd~~--G~l~~r~as~g~LN----------aP---WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 217 AGAGLGYVNVFTLN--GQLLRRVASSGRLN----------AP---WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred cCCCcceEEEEcCC--CcEEEEeccCCccc----------CC---ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 3433 799999985 88888874332211 11 5677765 4667776667999999999887
Q ss_pred C
Q 014644 337 S 337 (421)
Q Consensus 337 ~ 337 (421)
.
T Consensus 282 ~ 282 (336)
T TIGR03118 282 A 282 (336)
T ss_pred c
Confidence 3
No 472
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=60.54 E-value=22 Score=18.29 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=17.5
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEE
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIF 331 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iw 331 (421)
.+++++++|+.+++=+....|+++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 577888888877777777777654
No 473
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=60.33 E-value=1.1e+02 Score=26.40 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=86.4
Q ss_pred eeeeeecCCCCcceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644 128 RCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 204 (421)
Q Consensus 128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 204 (421)
+.++.+......--..+.|..++.++-+. ....|+.+|+. +++..+...+.+. .--..++...+ ++..
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~------~FgEGit~~~d--~l~q 104 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPR------YFGEGITILGD--KLYQ 104 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--------EEEEEEETT--EEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCcc------ccceeEEEECC--EEEE
Confidence 45555522223345678887778777774 35589999999 4554444432211 11234444433 3444
Q ss_pred EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCccee
Q 014644 205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA 283 (421)
Q Consensus 205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~ 283 (421)
-.=.++...+||..+-+.. ..+.- ...=..++ .||+.|+.++. ..|+++|..+ -+...
T Consensus 105 LTWk~~~~f~yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~ 163 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVR 163 (264)
T ss_dssp EESSSSEEEEEETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEE
T ss_pred EEecCCeEEEEccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEE
Confidence 4447788999999875543 22222 22335666 45666665544 8899999875 55555
Q ss_pred EEeeccCc--ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 284 TFKIHEHL--RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 284 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.+...... +..+ ..+.+- +|...|-.=....|..-|..+|
T Consensus 164 ~i~V~~~g~pv~~L------------NELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 164 TIQVTDNGRPVSNL------------NELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp EEE-EETTEE---E------------EEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred EEEEEECCEECCCc------------EeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 55544322 2111 455554 5554444444555666676666
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.76 E-value=16 Score=35.78 Aligned_cols=24 Identities=13% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCCeEEEEeCCCcEEEeecCCcee
Q 014644 46 NGSMFILSTNDKTIKLWKVRDQKV 69 (421)
Q Consensus 46 ~~~~l~t~s~d~~v~lwd~~~~~~ 69 (421)
+..++++-+.|+++|+||+.+++.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeE
Confidence 678999999999999999999884
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=59.33 E-value=1.4e+02 Score=27.02 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=37.0
Q ss_pred cceeEEEEcC-------CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644 248 ASISDIKFAN-------DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 319 (421)
Q Consensus 248 ~~v~~~~~s~-------~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l 319 (421)
..+..+.|-. .|.++++.-. +.|....+...+........-.... ..+.++++.|||.+.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------~r~~~v~~~pDG~Ly 320 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFG------------GRPRDVAQGPDGALY 320 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSS------------S-EEEEEEETTSEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCC------------CCceEEEEcCCCeEE
Confidence 4566676653 3445555543 6777777654223221111111110 012689999999888
Q ss_pred EEeeCCCeEE
Q 014644 320 ATGSYSNLLR 329 (421)
Q Consensus 320 ~~~s~dg~i~ 329 (421)
++-..+|.|+
T Consensus 321 v~~d~~G~iy 330 (331)
T PF07995_consen 321 VSDDSDGKIY 330 (331)
T ss_dssp EEE-TTTTEE
T ss_pred EEECCCCeEe
Confidence 8777788775
No 476
>PHA02713 hypothetical protein; Provisional
Probab=59.23 E-value=1.5e+02 Score=29.07 Aligned_cols=65 Identities=5% Similarity=0.065 Sum_probs=34.9
Q ss_pred CCCEEEEE-cC------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC--eEEEEECCc
Q 014644 149 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 219 (421)
Q Consensus 149 ~~~~l~s~-~d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~--~v~iwd~~~ 219 (421)
++++.+.| .+ ..+..||..+ ...+..+ ..++........+.+ ++ ++.+.|+.++ .+-.||..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~-~~~W~~~----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNT-YNGWELI----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCC-CCCeeEc----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence 46666665 43 2467888884 1123222 122222222222222 45 7888888888 677788777
Q ss_pred cc
Q 014644 220 SA 221 (421)
Q Consensus 220 ~~ 221 (421)
.+
T Consensus 535 ~~ 536 (557)
T PHA02713 535 YE 536 (557)
T ss_pred cc
Confidence 54
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=57.83 E-value=61 Score=22.46 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=22.9
Q ss_pred eEEEEcCCCCEEEEeeC-CCeEEEEecCC
Q 014644 308 FECSVSGDGLHFATGSY-SNLLRIFSHGV 335 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~-dg~i~iwd~~~ 335 (421)
..+.++|++++|+.++. .+.|++++.+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 58999999999887664 68899998753
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=56.08 E-value=49 Score=23.09 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=25.6
Q ss_pred CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644 268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 323 (421)
Q Consensus 268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s 323 (421)
|.+.-||..+ ++....+.+-..+ ..++++||+.+++.+-
T Consensus 37 GRll~ydp~t-~~~~vl~~~L~fp----------------NGVals~d~~~vlv~E 75 (89)
T PF03088_consen 37 GRLLRYDPST-KETTVLLDGLYFP----------------NGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEEETTT-TEEEEEEEEESSE----------------EEEEE-TTSSEEEEEE
T ss_pred cCEEEEECCC-CeEEEehhCCCcc----------------CeEEEcCCCCEEEEEe
Confidence 7888899876 5543344443333 6899999999876553
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.91 E-value=33 Score=34.05 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=25.7
Q ss_pred eEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 308 FECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+++.-+|.|+-++.++.||.|++|+....
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 57788899999999999999999998754
No 480
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=54.97 E-value=2.1e+02 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.7
Q ss_pred CCCC---EEEEeeCCCeEEEEecCCCCC
Q 014644 314 GDGL---HFATGSYSNLLRIFSHGVGSA 338 (421)
Q Consensus 314 p~~~---~l~~~s~dg~i~iwd~~~~~~ 338 (421)
.+|+ .++.+..+|.+++.|-.+++.
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 4666 778999999999999998843
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=53.21 E-value=1.6e+02 Score=25.95 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=74.5
Q ss_pred cceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644 248 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 326 (421)
Q Consensus 248 ~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg 326 (421)
+.+..+.++ +++...+.+ .-++|.|+.++..+...-...... ..-.|.-.|+++..+..|.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g----------------yaygv~vsGn~aYVadldd 148 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG----------------YAYGVYVSGNYAYVADLDD 148 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc----------------eEEEEEecCCEEEEeeccC
Confidence 456677777 556666655 679999998765554332222211 2345555788998888666
Q ss_pred eEEEEecCCCCCcee--EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC---CC-ccccccccccCeEEE
Q 014644 327 LLRIFSHGVGSAGGI--TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS---SG-HHELSYNLSSKLLHL 399 (421)
Q Consensus 327 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~---~~-~~~~~~~~~~~v~~~ 399 (421)
-+.+.|+.+.+.... .+.........++.+.+ +-..+..|+. .+-+. .+ .+.........+.++
T Consensus 149 gfLivdvsdpssP~lagrya~~~~d~~~v~ISGn---------~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv 219 (370)
T COG5276 149 GFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGN---------YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV 219 (370)
T ss_pred cEEEEECCCCCCceeeeeeccCCCCceeEEEecC---------eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE
Confidence 677889887543322 22222222234444443 2222333333 33311 11 122222334467777
Q ss_pred EEccCCCeEEEecCC
Q 014644 400 AWHPTTNLIACANGN 414 (421)
Q Consensus 400 ~~spd~~~la~~~~~ 414 (421)
..+++.-+++....+
T Consensus 220 ~vsdnr~y~vvy~eg 234 (370)
T COG5276 220 SVSDNRAYLVVYDEG 234 (370)
T ss_pred EecCCeeEEEEcccc
Confidence 778777666655543
No 482
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.18 E-value=29 Score=19.56 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=15.9
Q ss_pred CCCEEEEeeCCCeEEEEecCC
Q 014644 315 DGLHFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 315 ~~~~l~~~s~dg~i~iwd~~~ 335 (421)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788999999999998763
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=52.47 E-value=3.1e+02 Score=28.99 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=75.9
Q ss_pred CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCC
Q 014644 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 238 (421)
Q Consensus 159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~ 238 (421)
|.++.|++-..++.++.+. -.+-.+++. +..|.. .+++ ++....+++||+...++..+ ...
T Consensus 912 g~~ytyk~~~~g~~lellh-----~T~~~~~v~--Ai~~f~-~~~L-agvG~~l~~YdlG~K~lLRk----~e~------ 972 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLH-----KTEIPGPVG--AICPFQ-GRVL-AGVGRFLRLYDLGKKKLLRK----CEL------ 972 (1205)
T ss_pred CceEEEEEEecCceeeeee-----ccCCCccce--EEeccC-CEEE-EecccEEEEeeCChHHHHhh----hhh------
Confidence 4466666554455443330 011123333 456776 5444 45677899999988665422 111
Q ss_pred CcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644 239 SKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 317 (421)
Q Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 317 (421)
+.-...|..+.+. +..++.|+. ..+.++-.+.....+..+.....+. . |+.+.+ -|-.
T Consensus 973 -----k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR--~-----------Vt~~~~-lD~~ 1031 (1205)
T KOG1898|consen 973 -----KFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPR--H-----------VTALEL-LDYD 1031 (1205)
T ss_pred -----ccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccc--e-----------eeEEEE-ecCC
Confidence 0013466777665 778888865 6676666655455555554433322 1 133333 3555
Q ss_pred EEEEeeCCCeEEEEecCC
Q 014644 318 HFATGSYSNLLRIFSHGV 335 (421)
Q Consensus 318 ~l~~~s~dg~i~iwd~~~ 335 (421)
.+|.+..-|.+.+-.+..
T Consensus 1032 tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1032 TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred ceeeccccCcEEEEECCC
Confidence 677777778887777654
No 484
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=49.70 E-value=2.3e+02 Score=26.66 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=36.6
Q ss_pred CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEEC
Q 014644 201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI 275 (421)
Q Consensus 201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~ 275 (421)
.+|..-+.||.+.+|+-+.-... +.+.. ---...+.+.+.-..+++++. ..+..|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 67888899999999997653321 11111 112345677777777777654 77888865
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=49.39 E-value=1.2e+02 Score=31.37 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=32.6
Q ss_pred eEEEEcCCCCEEEE-eeCCC-----eEEEEecCCCCCceeEEecCCCCccceee
Q 014644 308 FECSVSGDGLHFAT-GSYSN-----LLRIFSHGVGSAGGITVEAGKNENRKPIL 355 (421)
Q Consensus 308 ~~~~~sp~~~~l~~-~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (421)
.+..|||||+.|+. .+.++ .|++-++.+.......|.-....|.....
T Consensus 353 ~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv 406 (912)
T TIGR02171 353 YHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRV 406 (912)
T ss_pred ecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEe
Confidence 67899999999987 55444 59999998865555555544444433333
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=49.08 E-value=36 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=18.2
Q ss_pred CeEEEEeCCCcEEEeecCCcee
Q 014644 48 SMFILSTNDKTIKLWKVRDQKV 69 (421)
Q Consensus 48 ~~l~t~s~d~~v~lwd~~~~~~ 69 (421)
..++.++.++.+...|.++++.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcE
Confidence 3677888899999999988763
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=46.76 E-value=82 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=28.6
Q ss_pred CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccc
Q 014644 187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 221 (421)
Q Consensus 187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~ 221 (421)
...+.++.-+|.+ +.++.+..||+|++|+....+
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccc
Confidence 3557788888998 999999999999999987644
No 488
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=45.76 E-value=44 Score=17.29 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=19.8
Q ss_pred ccEEEEEEEEcCCCCeEEEEeCCCcEEEee
Q 014644 34 EKINRVRWCAAPNGSMFILSTNDKTIKLWK 63 (421)
Q Consensus 34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd 63 (421)
+.|.+|+- ...+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~----g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAA----GDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEc----cCCEEEEEeCCCeEEecC
Confidence 45777776 246888999899999873
No 489
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=45.11 E-value=4.5e+02 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.5
Q ss_pred ccccCeEEEEEccCCCeEEEec
Q 014644 391 NLSSKLLHLAWHPTTNLIACAN 412 (421)
Q Consensus 391 ~~~~~v~~~~~spd~~~la~~~ 412 (421)
.+-..+.++|.+|||..+++-.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cccCCcceEEECCCCcEEEecC
Confidence 3446778999999998866544
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=44.12 E-value=2.6e+02 Score=25.81 Aligned_cols=152 Identities=11% Similarity=0.065 Sum_probs=77.8
Q ss_pred CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE----ecCCCC-eEEEEE-cC---CeEEEEECC
Q 014644 149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF----HPIYCN-LLAYSS-SR---GFVRLVDMR 218 (421)
Q Consensus 149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~p~~~~-~l~s~~-~d---~~v~iwd~~ 218 (421)
...+|+.. .++-+.+||++ ++.+..+. . +.+..+.. .-++.. -|+.++ .+ .+|++|.+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~--Gk~lq~~~------~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD--GKELQSLP------V---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT--S-EEEEE-------S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC--CcEEEeec------C---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence 44466665 88889999998 55555442 1 22222221 123312 144444 32 479999775
Q ss_pred cccccccchhhhccccccCCCcccccccccceeEEEEc--C-CCCEEE-EecC-CeEEEEECCCC--C----cceeEEee
Q 014644 219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--N-DGQHLL-SRDY-MNLKLWDIRMD--S----TPVATFKI 287 (421)
Q Consensus 219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s--~-~~~~l~-~~~~-~~i~i~d~~~~--~----~~~~~~~~ 287 (421)
..... +..+.. +.. .+......+..+++- | +|.+.+ .... |.+..|.+... + +.++.|..
T Consensus 136 ~~~g~---L~~v~~----~~~--p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 136 PDTGE---LTDVTD----PAA--PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp TTTTE---EEE-CB----TTC---EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CCCCc---ceEcCC----CCc--ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 32100 111110 000 001112346677763 3 466444 3333 88888877421 2 34666665
Q ss_pred ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
.... -.|.......+|+.+-++--|.-|+.+..
T Consensus 207 ~sQ~----------------EGCVVDDe~g~LYvgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 207 GSQP----------------EGCVVDDETGRLYVGEEDVGIWRYDAEPE 239 (381)
T ss_dssp SS-E----------------EEEEEETTTTEEEEEETTTEEEEEESSCC
T ss_pred CCcc----------------eEEEEecccCCEEEecCccEEEEEecCCC
Confidence 5443 47888888889999999988888887754
No 491
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=43.18 E-value=3.3e+02 Score=26.62 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCCEEEEecC-CeEEEEECCCCCcceeEEeecc
Q 014644 258 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE 289 (421)
Q Consensus 258 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~ 289 (421)
.+.+++.++. |.++.+|.++ ++++-.++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCC
Confidence 3456666664 9999999998 88888776643
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.14 E-value=2.3e+02 Score=24.89 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=35.8
Q ss_pred CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE------cCCeEEEEECCccc
Q 014644 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------SRGFVRLVDMRQSA 221 (421)
Q Consensus 159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~------~d~~v~iwd~~~~~ 221 (421)
..|++||.. ..+ +... ..+-.+.|.++.|..+. ++++.|. ....+..||+.+..
T Consensus 16 ~~lC~yd~~-~~q-W~~~------g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTD-NSQ-WSSP------GNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECC-CCE-eecC------CCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCe
Confidence 358899987 333 3221 13355789999998665 6777665 34578889988754
No 493
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=40.94 E-value=3e+02 Score=25.49 Aligned_cols=114 Identities=11% Similarity=0.188 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCC-CeEEEEEcCCeEEEEECCcccccccchhhhcccc
Q 014644 158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 234 (421)
Q Consensus 158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~ 234 (421)
...+.+|... .++..+++++. ...--+..+.|-. +.. .+.-++-.++..+++-........+ ..... .
T Consensus 228 g~~lhvy~w~-~~~~~QtidL~-----~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~--~visv-p 298 (476)
T KOG0918|consen 228 GSHLHVYQWS-PGELKQTIDLG-----DTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAE--VVISV-P 298 (476)
T ss_pred eeeeEEEecC-CccceeEEecC-----CCCcceEEeeeccCCCcccceeeeeccCCceeeeecccccccee--EEEec-C
Confidence 4468888887 66777777543 2234466777743 221 2344455666677765544221100 11111 0
Q ss_pred ccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc
Q 014644 235 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST 280 (421)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~ 280 (421)
......-..++-.+-|+.+-+|-|.++|..... |.|+-||+..+..
T Consensus 299 ~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 299 PLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred ccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCC
Confidence 011111223444667899999999999988764 9999999975433
No 494
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=40.90 E-value=90 Score=19.47 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=20.2
Q ss_pred eEEEEcCCCCEEEEeeC-----CCeEEEEecCCC
Q 014644 308 FECSVSGDGLHFATGSY-----SNLLRIFSHGVG 336 (421)
Q Consensus 308 ~~~~~sp~~~~l~~~s~-----dg~i~iwd~~~~ 336 (421)
.+++.-|||+.|++|.. +....+..+...
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 58899999999999864 234455555543
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=40.43 E-value=3.2e+02 Score=25.66 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=24.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644 307 KFECSVSGDGLHFATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 307 ~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~ 336 (421)
+.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 368899998899999999999999999864
No 496
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=37.55 E-value=4.8e+02 Score=26.93 Aligned_cols=82 Identities=6% Similarity=-0.015 Sum_probs=47.3
Q ss_pred ccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcce----eeeEEEEcCCCCEEEE
Q 014644 247 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF----DKFECSVSGDGLHFAT 321 (421)
Q Consensus 247 ~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sp~~~~l~~ 321 (421)
...|.++....-+.+++.. .||+|.++|..+ -+.+............+..+......| ....++|||.+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3567777777777777766 569999999876 333322211111111111111111111 1235899999998998
Q ss_pred eeCCCeEE
Q 014644 322 GSYSNLLR 329 (421)
Q Consensus 322 ~s~dg~i~ 329 (421)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=37.34 E-value=1.4e+02 Score=25.60 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=38.8
Q ss_pred ceeEEEEcCCCCEEEEecC----CeEEEEECCC-CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644 249 SISDIKFANDGQHLLSRDY----MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 323 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s 323 (421)
-+.+-.+-+||++|.+|++ ..+++++... ...+.. ........ ... +.-+...-|||+.|+.|+
T Consensus 68 FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w-~e~~~~m~--------~~R--WYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 68 FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDW-TESPNDMQ--------SGR--WYPTATTLPDGRVLIVGG 136 (243)
T ss_pred cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCc-eECccccc--------CCC--ccccceECCCCCEEEEeC
Confidence 3455567899999998854 4588887643 011110 00000000 000 113556677999998888
Q ss_pred CCC-eEEEEe
Q 014644 324 YSN-LLRIFS 332 (421)
Q Consensus 324 ~dg-~i~iwd 332 (421)
... +.-+|.
T Consensus 137 ~~~~t~E~~P 146 (243)
T PF07250_consen 137 SNNPTYEFWP 146 (243)
T ss_pred cCCCcccccC
Confidence 764 334444
No 498
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=37.14 E-value=2.9e+02 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.3
Q ss_pred eEEEEEccCCCeEEEecCCceEEEe
Q 014644 396 LLHLAWHPTTNLIACANGNSLFFHY 420 (421)
Q Consensus 396 v~~~~~spd~~~la~~~~~~~~i~~ 420 (421)
...+.|..++..+++|-.+-+..|+
T Consensus 306 l~~V~~ts~~~~~l~Gq~Gvll~~n 330 (339)
T COG4447 306 LYSVVFTSPKAGFLCGQKGVLLKYN 330 (339)
T ss_pred hheEEeccCCceEEEcCCceEEEec
Confidence 6678899999999999888888886
No 499
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.04 E-value=39 Score=34.43 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=50.0
Q ss_pred ceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC----------C-C
Q 014644 249 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----------D-G 316 (421)
Q Consensus 249 ~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----------~-~ 316 (421)
.-..++.+|+|++.|..++ |.|.+.|+.. ...+..++|.... ++.|-+ . .
T Consensus 323 ~ge~lslSP~gtlAAVTD~lgRVlLlDta~-~ivvr~wKGYRDA-----------------sc~fv~vkek~~~s~~~~s 384 (1244)
T KOG2727|consen 323 KGEKLSLSPSGTLAAVTDSLGRVLLLDTAA-LIVVRLWKGYRDA-----------------SCVFVEVKEKKGKSEPVKS 384 (1244)
T ss_pred ccceeeeCCCccEEEEecccCcEEEEehhh-hhHHHHhcccccc-----------------eeEEEEcccccCCCccCcC
Confidence 3457889999999998887 9999999985 7778888877663 444443 1 1
Q ss_pred C---E-EEEeeCCCeEEEEecCCC
Q 014644 317 L---H-FATGSYSNLLRIFSHGVG 336 (421)
Q Consensus 317 ~---~-l~~~s~dg~i~iwd~~~~ 336 (421)
+ + ++.+-.-|.+-||.+++|
T Consensus 385 RvAlFLvIyAPRrgiLEVW~~q~g 408 (1244)
T KOG2727|consen 385 RVALFLVIYAPRRGILEVWQMQTG 408 (1244)
T ss_pred ceeEEEEEecccccHHHHHHhccC
Confidence 1 1 223445678888988887
No 500
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=36.52 E-value=4.4e+02 Score=26.13 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=33.1
Q ss_pred CCCEEEEE-cCC-----cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe-cCCCCeEEEEEcCC------eEEEE
Q 014644 149 DCETFVSA-DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRG------FVRLV 215 (421)
Q Consensus 149 ~~~~l~s~-~d~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d~------~v~iw 215 (421)
+|.+.|.| .|| ++..||..++ .+... ........+.... -+| .+.+.|+.++ ++..|
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~v-------a~m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPV-------APMLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCC--ccccc-------CCCCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEE
Confidence 56666766 664 4778887732 23222 1111122222222 234 6677777443 56788
Q ss_pred ECCccc
Q 014644 216 DMRQSA 221 (421)
Q Consensus 216 d~~~~~ 221 (421)
|..++.
T Consensus 450 DP~t~~ 455 (571)
T KOG4441|consen 450 DPETNT 455 (571)
T ss_pred cCCCCc
Confidence 887754
Done!