BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014646
         (421 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
 pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
 pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
 pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
 pdb|3S51|A Chain A, Structure Of Fanci
 pdb|3S51|B Chain B, Structure Of Fanci
 pdb|3S51|C Chain C, Structure Of Fanci
 pdb|3S51|D Chain D, Structure Of Fanci
          Length = 1308

 Score = 28.9 bits (63), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 167 EDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG----YIAYNFVIGA 222
           +D+ +  + R IKS  E   L++ + FSQ+T V ++  +    ++G     + YNF I  
Sbjct: 702 DDMLESITVRMIKSELEDFELDKSADFSQNTNVGIKNNICACLIMGVCEVLMEYNFSISN 761

Query: 223 YS 224
           +S
Sbjct: 762 FS 763


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,481,858
Number of Sequences: 62578
Number of extensions: 365654
Number of successful extensions: 868
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 2
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)