Query 014647
Match_columns 421
No_of_seqs 332 out of 1042
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 2.9E-54 6.3E-59 419.4 25.5 273 96-409 46-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 7.3E-50 1.6E-54 376.1 14.1 189 137-333 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.9E-45 4E-50 343.7 20.9 171 149-336 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.0 9E-08 1.9E-12 96.5 22.5 240 125-378 1-285 (314)
5 TIGR03805 beta_helix_1 paralle 98.5 1.6E-05 3.5E-10 80.2 19.4 157 151-317 58-246 (314)
6 PF14592 Chondroitinas_B: Chon 98.3 8.2E-06 1.8E-10 85.1 14.2 183 123-312 5-234 (425)
7 PLN02218 polygalacturonase ADP 98.3 1.9E-05 4.1E-10 83.0 16.2 113 213-333 240-356 (431)
8 PLN03003 Probable polygalactur 98.3 2.2E-05 4.8E-10 82.9 16.6 154 135-299 105-269 (456)
9 PLN02188 polygalacturonase/gly 98.2 3.7E-05 7.9E-10 80.3 16.5 104 174-298 181-285 (404)
10 PLN02793 Probable polygalactur 98.2 4.1E-05 8.8E-10 80.8 16.2 82 213-298 225-307 (443)
11 PLN02155 polygalacturonase 98.1 6.4E-05 1.4E-09 78.2 14.5 104 174-298 171-275 (394)
12 TIGR03808 RR_plus_rpt_1 twin-a 98.0 0.00012 2.7E-09 76.7 14.4 20 173-192 137-156 (455)
13 PF00295 Glyco_hydro_28: Glyco 98.0 7.2E-05 1.6E-09 75.7 12.2 124 173-317 117-244 (326)
14 PF13229 Beta_helix: Right han 97.9 9E-05 1.9E-09 64.4 10.7 132 174-337 3-138 (158)
15 PLN02218 polygalacturonase ADP 97.9 0.00049 1.1E-08 72.5 17.5 138 173-340 194-349 (431)
16 PLN03010 polygalacturonase 97.9 0.00061 1.3E-08 71.4 17.4 153 173-334 159-322 (409)
17 TIGR03808 RR_plus_rpt_1 twin-a 97.9 0.00075 1.6E-08 71.0 17.9 116 123-258 55-176 (455)
18 PLN03003 Probable polygalactur 97.7 0.0015 3.2E-08 69.3 17.2 135 155-312 113-261 (456)
19 PLN03010 polygalacturonase 97.6 0.0034 7.3E-08 65.8 17.6 117 217-340 182-314 (409)
20 PF05048 NosD: Periplasmic cop 97.4 0.0073 1.6E-07 57.6 16.1 63 216-288 80-142 (236)
21 PLN02155 polygalacturonase 97.4 0.0018 3.8E-08 67.6 12.5 142 135-313 107-269 (394)
22 PLN02480 Probable pectinestera 97.3 0.011 2.3E-07 60.8 16.4 120 123-260 61-198 (343)
23 PF13229 Beta_helix: Right han 97.3 0.0026 5.5E-08 55.2 10.2 129 173-333 25-158 (158)
24 PF05048 NosD: Periplasmic cop 97.3 0.0052 1.1E-07 58.7 13.0 129 174-336 38-168 (236)
25 PLN02197 pectinesterase 97.2 0.0049 1.1E-07 67.3 14.0 151 77-260 244-425 (588)
26 PLN02793 Probable polygalactur 97.2 0.0045 9.7E-08 65.6 13.3 86 173-288 179-269 (443)
27 PF12708 Pectate_lyase_3: Pect 97.2 0.014 3.1E-07 54.0 14.7 40 124-164 20-62 (225)
28 PF00295 Glyco_hydro_28: Glyco 97.1 0.0021 4.6E-08 65.1 9.4 109 151-289 62-185 (326)
29 PF01696 Adeno_E1B_55K: Adenov 97.0 0.063 1.4E-06 55.8 18.6 175 125-338 57-242 (386)
30 PLN02682 pectinesterase family 96.9 0.027 5.8E-07 58.4 14.9 119 124-260 84-229 (369)
31 PLN02188 polygalacturonase/gly 96.8 0.017 3.6E-07 60.7 12.9 169 135-339 114-313 (404)
32 PF04431 Pec_lyase_N: Pectate 96.8 0.0004 8.6E-09 53.2 0.6 25 28-52 19-43 (56)
33 PLN02304 probable pectinestera 96.6 1.2 2.7E-05 46.5 24.8 136 124-287 89-245 (379)
34 COG3420 NosD Nitrous oxidase a 96.6 0.034 7.5E-07 56.7 12.6 71 173-259 122-192 (408)
35 PF07602 DUF1565: Protein of u 96.5 0.18 3.8E-06 49.7 17.1 188 123-334 16-240 (246)
36 COG5434 PGU1 Endopygalactoruna 96.5 0.033 7.2E-07 60.3 13.0 102 173-298 263-375 (542)
37 PLN02176 putative pectinestera 96.5 0.061 1.3E-06 55.3 14.4 120 124-260 53-189 (340)
38 PLN02665 pectinesterase family 96.4 0.17 3.8E-06 52.4 17.2 127 124-269 82-228 (366)
39 smart00656 Amb_all Amb_all dom 96.3 0.33 7.2E-06 45.7 16.7 135 155-312 45-188 (190)
40 PLN02432 putative pectinestera 96.0 0.14 2.9E-06 51.7 13.6 130 124-287 25-171 (293)
41 PLN02416 probable pectinestera 96.0 0.09 1.9E-06 57.2 13.1 114 124-260 244-378 (541)
42 PLN02506 putative pectinestera 96.0 0.17 3.6E-06 55.1 15.0 131 124-287 246-397 (537)
43 PLN02773 pectinesterase 95.9 1.7 3.7E-05 44.4 21.1 98 124-241 19-147 (317)
44 PLN02484 probable pectinestera 95.9 0.14 3E-06 56.2 14.0 115 124-260 286-421 (587)
45 COG3420 NosD Nitrous oxidase a 95.9 0.15 3.3E-06 52.2 13.0 132 149-302 45-197 (408)
46 PLN02201 probable pectinestera 95.8 0.15 3.2E-06 55.3 13.6 131 124-287 220-371 (520)
47 PLN02488 probable pectinestera 95.8 0.15 3.2E-06 54.9 13.5 113 124-259 211-344 (509)
48 PLN02170 probable pectinestera 95.8 0.15 3.3E-06 55.2 13.4 113 124-259 239-373 (529)
49 PLN02995 Probable pectinestera 95.7 0.16 3.5E-06 55.2 13.5 114 124-260 237-373 (539)
50 PLN03043 Probable pectinestera 95.7 0.19 4.1E-06 54.7 13.8 113 124-259 237-373 (538)
51 PLN02933 Probable pectinestera 95.7 0.18 4E-06 54.6 13.6 114 124-260 232-366 (530)
52 PLN02217 probable pectinestera 95.6 0.17 3.8E-06 56.2 13.4 116 124-259 264-417 (670)
53 PLN02745 Putative pectinestera 95.6 0.22 4.7E-06 54.8 13.9 131 124-287 299-450 (596)
54 PLN02916 pectinesterase family 95.5 0.22 4.7E-06 53.7 13.4 114 124-260 201-338 (502)
55 PLN02990 Probable pectinestera 95.5 0.24 5.2E-06 54.3 13.9 113 124-259 273-407 (572)
56 PLN02634 probable pectinestera 95.5 0.32 7E-06 50.3 14.1 119 124-260 70-215 (359)
57 PLN02301 pectinesterase/pectin 95.4 0.22 4.7E-06 54.3 13.0 113 124-259 250-383 (548)
58 PLN02314 pectinesterase 95.4 0.22 4.8E-06 54.7 13.2 113 124-259 292-425 (586)
59 PLN02708 Probable pectinestera 95.3 0.27 5.9E-06 53.6 13.4 113 124-259 255-390 (553)
60 PLN02497 probable pectinestera 95.2 0.44 9.6E-06 48.9 13.9 121 124-260 46-183 (331)
61 PLN02468 putative pectinestera 95.1 0.28 6E-06 53.7 13.0 114 124-260 272-406 (565)
62 PLN02713 Probable pectinestera 95.1 0.32 6.9E-06 53.3 13.3 113 124-259 264-400 (566)
63 PLN02313 Pectinesterase/pectin 94.9 0.38 8.2E-06 52.9 13.1 112 124-258 289-421 (587)
64 PF01095 Pectinesterase: Pecti 94.5 0.58 1.2E-05 47.2 12.5 123 123-268 13-155 (298)
65 PLN02671 pectinesterase 94.5 0.8 1.7E-05 47.5 13.6 118 124-260 73-219 (359)
66 COG3866 PelB Pectate lyase [Ca 94.4 1.1 2.3E-05 45.6 13.7 124 156-313 131-276 (345)
67 PF00544 Pec_lyase_C: Pectate 93.3 0.65 1.4E-05 44.0 9.8 115 173-310 77-200 (200)
68 PRK10531 acyl-CoA thioesterase 92.5 3.5 7.6E-05 43.7 14.6 138 124-287 96-300 (422)
69 TIGR03804 para_beta_helix para 91.9 0.27 5.8E-06 35.0 3.9 41 217-259 1-41 (44)
70 PF14592 Chondroitinas_B: Chon 90.1 1.5 3.3E-05 46.4 9.1 80 224-313 199-283 (425)
71 PF03211 Pectate_lyase: Pectat 88.9 2.7 5.9E-05 40.7 9.1 51 209-260 90-141 (215)
72 PF08480 Disaggr_assoc: Disagg 88.6 2.3 5E-05 40.3 8.1 88 248-337 2-110 (198)
73 COG5434 PGU1 Endopygalactoruna 82.1 8.4 0.00018 42.2 9.8 116 173-312 240-368 (542)
74 PF07602 DUF1565: Protein of u 77.2 13 0.00027 36.8 8.5 87 154-264 96-192 (246)
75 PF08480 Disaggr_assoc: Disagg 76.0 59 0.0013 31.1 12.1 70 222-294 32-112 (198)
76 PF12708 Pectate_lyase_3: Pect 71.7 6.6 0.00014 36.1 4.8 38 222-261 183-221 (225)
77 PF12541 DUF3737: Protein of u 66.7 71 0.0015 32.1 10.9 31 278-312 194-224 (277)
78 TIGR03804 para_beta_helix para 65.3 13 0.00028 26.2 4.2 41 174-236 2-42 (44)
79 PRK10123 wcaM putative colanic 59.4 16 0.00035 37.2 5.0 56 174-240 262-317 (464)
80 PF12541 DUF3737: Protein of u 53.7 74 0.0016 32.0 8.5 16 177-192 16-31 (277)
81 PLN02698 Probable pectinestera 47.0 74 0.0016 34.6 8.0 67 172-259 263-330 (497)
82 PF01696 Adeno_E1B_55K: Adenov 43.7 4.2E+02 0.009 28.1 12.6 78 174-261 139-221 (386)
83 PRK09752 adhesin; Provisional 27.8 5.5E+02 0.012 31.2 11.4 71 170-260 112-192 (1250)
84 PF03718 Glyco_hydro_49: Glyco 23.7 5.1E+02 0.011 28.9 9.5 69 214-287 372-443 (582)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-54 Score=419.39 Aligned_cols=273 Identities=30% Similarity=0.361 Sum_probs=222.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHHhcCCCeEEEEecceEEeec------ceEEecCCcEEEeecceEEEe
Q 014647 96 QGTLGGKGGQIYVVTDSSDSDPANPTPGTLRHAVIQTEPIWITFASNMLIKLK------HELIINSYKTIDGRGANVEIT 169 (421)
Q Consensus 96 ~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~l~------~~L~I~snkTI~G~ga~i~I~ 169 (421)
.+||||.+|++++|.+.+| |...+...+|.++|.-+.|+|++. .+|.+.|||||.|.|++.+|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 3799999999999999887 677788888886666667899876 467778999999999999999
Q ss_pred cceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceee-eCCccEEEEeEEEec--------CCCCe
Q 014647 170 GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI-FGSQKIWVDHCSLSY--------CTDGL 240 (421)
Q Consensus 170 ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i-~gs~nVWIDHcs~s~--------~~DGl 240 (421)
|++ |.|+.+.|||||||+|++.. +++. ..|+|+| .+++|||||||+|+. ..||+
T Consensus 116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 998 99999999999999999864 2321 2699999 579999999999999 78999
Q ss_pred eeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCcccCCCeEEEEcceEeCCc--cee
Q 014647 241 IDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWE--MYA 317 (421)
Q Consensus 241 iDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~--~ya 317 (421)
+|+++++++||||||+|++|+|.+|+|.+|+...|.| .+||+|||+| +|+.||+||+|||.+||+||||.... .||
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a 257 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA 257 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence 9999999999999999999999999999998655555 8999999999 68999999999999999999999654 466
Q ss_pred ecCCCCceEEeeCcEEeCCCCCCccceeeecccCccccCCceeeccCceEEeceeeecCCCC------CCccCCCCCcee
Q 014647 318 IGGSANPTINSQGNRYTAPPDDNAKEVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGAG------LSTQYAKASSVE 391 (421)
Q Consensus 318 igg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~~s~Gd~~~nG~~f~~sg~~------~~~~~~~~~~~~ 391 (421)
++-+..++|++|+|||+....+..---+++. + -.|.. -+|++|..++.. .+..+...|+++
T Consensus 258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~------GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt 324 (345)
T COG3866 258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S------GYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT 324 (345)
T ss_pred EeeccceEEEEecceeccCCCCceeeecCCc--c------ceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence 6666669999999999997554321111111 0 11221 345555554422 344567788899
Q ss_pred cCChhhH-HHHhhccCCcc
Q 014647 392 PKSAALI-DQLTMNAGVFG 409 (421)
Q Consensus 392 ~~~~~~v-~~~t~~AG~~~ 409 (421)
+.|++.| +.||++||+.+
T Consensus 325 vd~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 325 VDPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred cCChHHhhhhhhcccccee
Confidence 9998888 99999999754
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=7.3e-50 Score=376.08 Aligned_cols=189 Identities=40% Similarity=0.659 Sum_probs=160.1
Q ss_pred EEEecceEEeecceEEecCCcEEEeecceEEEecceEEEEe-eeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCC
Q 014647 137 ITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQ-YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDG 215 (421)
Q Consensus 137 IvF~~~g~I~l~~~L~I~snkTI~G~ga~i~I~ggg~i~i~-~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdg 215 (421)
+||+++|+|+++.+|.|.|||||+|+|++++|.+.| +.+. +++|||||||+|++. .++..+...+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G-~~i~~~~~NVIirNl~~~~~------~~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGG-LRIIKGASNVIIRNLRFRNV------PVDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSE-EEEEESCEEEEEES-EEECE------EEECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECce-EEEecCCCeEEEECCEEEec------cccCCcccCCCccccCC
Confidence 466667899999999999999999999999999987 6665 899999999999985 12222222222335688
Q ss_pred CceeeeCCccEEEEeEEEecC--------CCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEe
Q 014647 216 DGISIFGSQKIWVDHCSLSYC--------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 216 DaI~i~gs~nVWIDHcs~s~~--------~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
|+|++++++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|....|.+++||||||+|
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888888889999999999
Q ss_pred cCCCcCcCcccCCCeEEEEcceEeCCcceeecCCCCceEEeeCcEE
Q 014647 288 GVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRY 333 (421)
Q Consensus 288 ~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F 333 (421)
.++.+|+||+|+|++|+|||+|+++..|+++.+.++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 579999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.9e-45 Score=343.75 Aligned_cols=171 Identities=60% Similarity=0.892 Sum_probs=157.0
Q ss_pred ceEEecCCcEEEeecceEEEecceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEE
Q 014647 149 HELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWV 228 (421)
Q Consensus 149 ~~L~I~snkTI~G~ga~i~I~ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWI 228 (421)
.+|.|.|||||+|+|++++|+|++ |++..++|||||||+|++..+. . ..++|+|+++++++|||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~g-l~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGG-LTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeE-EEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 567889999999999999999986 9998899999999999986431 1 24789999999999999
Q ss_pred EeEEEecC---------CCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccC
Q 014647 229 DHCSLSYC---------TDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR 299 (421)
Q Consensus 229 DHcs~s~~---------~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R 299 (421)
|||+|+|. .|+++|++.++++||||||+|.+|+|.+|+|++|+...+..++||+|||+|+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876555689999999996 6899999999
Q ss_pred CCeEEEEcceEeCCcceeecCCCCceEEeeCcEEeCC
Q 014647 300 RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAP 336 (421)
Q Consensus 300 ~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~ 336 (421)
+|++|++||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.99 E-value=9e-08 Score=96.45 Aligned_cols=240 Identities=16% Similarity=0.186 Sum_probs=137.0
Q ss_pred HHHHHhcCCCe-EEEEecceEEeecceEEec-CCcEEEeecce-EEEec------ceEEEEeeeccEEEEeeEEEeccc-
Q 014647 125 LRHAVIQTEPI-WITFASNMLIKLKHELIIN-SYKTIDGRGAN-VEITG------NGCLTLQYVSHVIIHNVHIHHCKP- 194 (421)
Q Consensus 125 LR~av~~~~P~-~IvF~~~g~I~l~~~L~I~-snkTI~G~ga~-i~I~g------gg~i~i~~a~NVIIrnL~ir~~~~- 194 (421)
|.+|+.+.+|- +|++ ..|+-++++.|.|. +++||.|.|.. ..|.+ +..|.+ .++||.|++++|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~ 78 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGD 78 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCC
Confidence 35667665554 4444 34677777788885 89999998764 33432 223555 58899999999987531
Q ss_pred ------CCCceeeCCCCcccc--CcCCCCCceeeeCCccEEEEeEEEecCCC-CeeeeeeCCceEEEEceEeccCCeeee
Q 014647 195 ------SGNTMIASSPTHVGY--RGKSDGDGISIFGSQKIWVDHCSLSYCTD-GLIDAIMGSTGITISNNYFSHHNEVML 265 (421)
Q Consensus 195 ------~~~~~i~~~~~~~g~--r~~sdgDaI~i~gs~nVWIDHcs~s~~~D-GliDv~~gs~~ITISnn~f~~h~k~~L 265 (421)
+.+..|+........ .....++||.++.|+++-|.+|.++...| |++ ...|++++|++|.+.+...+..
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy--v~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY--VGQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE--ECCCCCeEEECCEEccCcceEE
Confidence 122333332211000 01135688999999999999999998876 665 4678999999999976544433
Q ss_pred ecCCCcccCCCCceEEEEceEecCCCcCc-------CcccCCCeEEEEcceEeCCcc--e--------------eecCCC
Q 014647 266 LGHNDKYALDMGMQVTIAFNHFGVALVQR-------MPRCRRGYIHVVNNDFTSWEM--Y--------------AIGGSA 322 (421)
Q Consensus 266 ~G~sd~~~~d~g~~VTihhN~f~~n~~~R-------~Pr~R~G~~Hv~NN~y~~~~~--y--------------aigg~~ 322 (421)
+-.+ .++.+.+|.+..|...= .|.+--..+.|.||.+.+... + ++-...
T Consensus 157 i~~S--------~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~ 228 (314)
T TIGR03805 157 IENS--------QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMA 228 (314)
T ss_pred EEec--------CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEc
Confidence 3222 24566677775432210 111112257777777754211 1 111112
Q ss_pred CceEEeeCcEEeCCCCCCccceeeecccC---ccccCCceeeccCceEEeceeeecCCC
Q 014647 323 NPTINSQGNRYTAPPDDNAKEVTKRVETD---ESEWAGWNWRTEGDVMVNGAFFVPSGA 378 (421)
Q Consensus 323 ~~~i~~egN~F~~~~~~~~k~vt~r~~~~---~~~~~~~~~~s~Gd~~~nG~~f~~sg~ 378 (421)
...+.+++|.|..-.....- ++...... ...-.+|.-.. .++.+-+|.|...|.
T Consensus 229 ~~~v~I~~N~i~~n~~~~i~-~~~~~~~~~~~~~~~~~~~~~~-~~v~i~~N~~~~~g~ 285 (314)
T TIGR03805 229 NRDVEIFGNVISNNDTANVL-ISSYHSTGLPDQPPDDGFDPYP-RNISIHDNTFSDGGT 285 (314)
T ss_pred ccceEEECCEEeCCcceeEE-EEecccccCCCCCcCCCccCCC-cceEEEccEeecCCC
Confidence 35678889999876543211 22111110 00012232222 567888899988775
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.45 E-value=1.6e-05 Score=80.23 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=102.1
Q ss_pred EEe-cCCcEEEeecceEEEecceEEEEeeeccEEEEeeEEEec--------------ccCCCceeeCCCCccccCcCCCC
Q 014647 151 LII-NSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHC--------------KPSGNTMIASSPTHVGYRGKSDG 215 (421)
Q Consensus 151 L~I-~snkTI~G~ga~i~I~ggg~i~i~~a~NVIIrnL~ir~~--------------~~~~~~~i~~~~~~~g~r~~sdg 215 (421)
+.+ .+++||.|.+-. .-.+. .|.++.++|++|+++++... ..+.+..|+++..+ ...+
T Consensus 58 i~v~a~~VtI~~ltI~-~~~~~-GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~-----g~~d 130 (314)
T TIGR03805 58 LLVTSDDVTLSDLAVE-NTKGD-GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVR-----GASD 130 (314)
T ss_pred EEEEeCCeEEEeeEEE-cCCCC-eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEE-----CCCc
Confidence 444 578888886321 00123 48888999999999999622 12334455544321 2234
Q ss_pred CceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeee-cCCCcccCCCCceEEEEceEecCCCcCc
Q 014647 216 DGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLL-GHNDKYALDMGMQVTIAFNHFGVALVQR 294 (421)
Q Consensus 216 DaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~-G~sd~~~~d~g~~VTihhN~f~~n~~~R 294 (421)
+||.+..++++.|.+|.+.....|+. .+.|.+++|.+|.+.+-....++ +.+..... ...++.+++|.|..|....
T Consensus 131 ~GIyv~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~-~s~~~~v~~N~i~~n~~~n 207 (314)
T TIGR03805 131 AGIYVGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQP-GGSNVRVFDNIIFDNNTPN 207 (314)
T ss_pred ccEEECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcC-CccceEEECCEEECCCCCC
Confidence 69999999999999999999999985 46789999999999976555544 32221111 1258999999997552210
Q ss_pred ----------CcccCC------CeEEEEcceEeCCccee
Q 014647 295 ----------MPRCRR------GYIHVVNNDFTSWEMYA 317 (421)
Q Consensus 295 ----------~Pr~R~------G~~Hv~NN~y~~~~~ya 317 (421)
.|.-+. -.+.++||.+++-...+
T Consensus 208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~ 246 (314)
T TIGR03805 208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTAN 246 (314)
T ss_pred CcccCCceecCCCCcEEEEEcccceEEECCEEeCCccee
Confidence 111110 14699999998754433
No 6
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.34 E-value=8.2e-06 Score=85.05 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=80.7
Q ss_pred hhHHHHHhcCCCe-EEEEecceEEeecceEEe------cCCcEEEeec-ceEEEecceEEEEeeeccEEEEeeEEEeccc
Q 014647 123 GTLRHAVIQTEPI-WITFASNMLIKLKHELII------NSYKTIDGRG-ANVEITGNGCLTLQYVSHVIIHNVHIHHCKP 194 (421)
Q Consensus 123 GsLR~av~~~~P~-~IvF~~~g~I~l~~~L~I------~snkTI~G~g-a~i~I~ggg~i~i~~a~NVIIrnL~ir~~~~ 194 (421)
.+|..|+.+-.|= +|+. .+|+-+ ..+|.+ ...+||..+. ..+.|.|...|+|. .+.++|.+|.|++...
T Consensus 5 ~~lq~Ai~~a~pGD~I~L-~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 5 AELQSAIDNAKPGDTIVL-ADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHHhCCCCCEEEE-CCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence 4689998764442 2333 234444 234544 2468888874 34888888889995 6999999999998753
Q ss_pred CC----------------CceeeCCCCccccCc-CCCCCceee----eCCccEEEEeEEEecC-CCC-eeeee-------
Q 014647 195 SG----------------NTMIASSPTHVGYRG-KSDGDGISI----FGSQKIWVDHCSLSYC-TDG-LIDAI------- 244 (421)
Q Consensus 195 ~~----------------~~~i~~~~~~~g~r~-~sdgDaI~i----~gs~nVWIDHcs~s~~-~DG-liDv~------- 244 (421)
.. .+++...... .+.. ..+.+...+ -.++|--||||+|..- ..| ++-+.
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~-~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~ 160 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVID-DFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQ 160 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEE-S--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-
T ss_pred CCCceEEeecCCCcceecceEEEeEEee-ccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcc
Confidence 22 1222211000 0100 111222334 1368888999999973 223 22221
Q ss_pred eCCceEEEEceEecc-------CCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCccc--CCCeEEEEcceEeC
Q 014647 245 MGSTGITISNNYFSH-------HNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRC--RRGYIHVVNNDFTS 312 (421)
Q Consensus 245 ~gs~~ITISnn~f~~-------h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~--R~G~~Hv~NN~y~~ 312 (421)
.-..+-+|.+|+|.+ ..+++-+|.|.....+ -+.++.+|+| ++|..-.--+ +-+.--+.||.|++
T Consensus 161 ~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 161 SIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES
T ss_pred ccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEEe
Confidence 123577999999994 3456778877543332 4788999999 5676543322 22333445555443
No 7
>PLN02218 polygalacturonase ADPG
Probab=98.30 E-value=1.9e-05 Score=83.01 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCC
Q 014647 213 SDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVAL 291 (421)
Q Consensus 213 sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~ 291 (421)
...|||.+.+++||.|.+|.++.+.|.+ .++.++++|+|++|.+... ...-+|+--.+....+ .+|++.++.| .+
T Consensus 240 pNTDGIdi~ss~nV~I~n~~I~tGDDcI-aIksgs~nI~I~n~~c~~G-HGisIGS~g~~~~~~~V~nV~v~n~~~-~~- 315 (431)
T PLN02218 240 PNTDGIHITNTQNIRVSNSIIGTGDDCI-SIESGSQNVQINDITCGPG-HGISIGSLGDDNSKAFVSGVTVDGAKL-SG- 315 (431)
T ss_pred CCCCcEeecccceEEEEccEEecCCceE-EecCCCceEEEEeEEEECC-CCEEECcCCCCCCCceEEEEEEEccEE-ec-
Confidence 3569999999999999999999987755 6788999999999999643 3456886433322223 6899999999 44
Q ss_pred cCcCcccC---CCeEEEEcceEeCCcceeecCCCCceEEeeCcEE
Q 014647 292 VQRMPRCR---RGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRY 333 (421)
Q Consensus 292 ~~R~Pr~R---~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F 333 (421)
..+.=|++ .|.-.+-|=.|.+..|..+. .| |.+.-+|.
T Consensus 316 t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I~Idq~Y~ 356 (431)
T PLN02218 316 TDNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-IIIDQDYC 356 (431)
T ss_pred CCcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-EEEEeecc
Confidence 33444443 23334444445555444332 23 55555553
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.30 E-value=2.2e-05 Score=82.90 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=95.7
Q ss_pred eEEEEecceEEeecceEEecCCcEEEeecceEEE---ecceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCc-----
Q 014647 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVEI---TGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTH----- 206 (421)
Q Consensus 135 ~~IvF~~~g~I~l~~~L~I~snkTI~G~ga~i~I---~ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~----- 206 (421)
.||.|..- +.|.|...=||+|+|..-.- ...-.|++.+++|+.|++|++++.. .|...+.....-
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp-~w~i~i~~c~nV~i~~l 177 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP-MAHIHISECNYVTISSL 177 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC-cEEEEEeccccEEEEEE
Confidence 48888532 12444333478888754110 0011467778888888888887762 222111110000
Q ss_pred --cccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEE
Q 014647 207 --VGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIA 283 (421)
Q Consensus 207 --~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTih 283 (421)
.........|||.+..|+||+|.+|.++...|.+ .++.++++|+|++|.+... .++-+|+--++....+ .+|++.
T Consensus 178 ~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCI-aiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~NV~v~ 255 (456)
T PLN03003 178 RINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCI-AINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVENVCVQ 255 (456)
T ss_pred EEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeE-EeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEEEEEE
Confidence 0001234679999999999999999999988876 5788999999999998653 3456776543321122 689999
Q ss_pred ceEecCCCcCcCcccC
Q 014647 284 FNHFGVALVQRMPRCR 299 (421)
Q Consensus 284 hN~f~~n~~~R~Pr~R 299 (421)
++.|. ++ .+.=|++
T Consensus 256 n~~~~-~T-~nGvRIK 269 (456)
T PLN03003 256 NCNFR-GT-MNGARIK 269 (456)
T ss_pred eeEEE-CC-CcEEEEE
Confidence 99994 43 3444553
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.24 E-value=3.7e-05 Score=80.29 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=74.8
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEE
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITIS 253 (421)
+.+..++||.|++|+|.... .....|||.+..|+||+|.+|.++...|.+ .++.++++|+|+
T Consensus 181 i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDDcI-aiksg~~nI~I~ 242 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDDCI-SIGQGNSQVTIT 242 (404)
T ss_pred EEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCcEE-EEccCCccEEEE
Confidence 45557788888888886421 023569999999999999999999998865 577899999999
Q ss_pred ceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCccc
Q 014647 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (421)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~ 298 (421)
|+.+... ..+-+|+--.+....+ .+|++.++.|. + .++.=|+
T Consensus 243 n~~c~~g-hGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~Giri 285 (404)
T PLN02188 243 RIRCGPG-HGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRI 285 (404)
T ss_pred EEEEcCC-CcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEE
Confidence 9999643 3466776332222223 68999999994 4 3344444
No 10
>PLN02793 Probable polygalacturonase
Probab=98.21 E-value=4.1e-05 Score=80.83 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=60.3
Q ss_pred CCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCC
Q 014647 213 SDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVAL 291 (421)
Q Consensus 213 sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~ 291 (421)
...|||.+..++||+|.+|.+....|.+ .++.++++|+|+||.+.... ..-+|+--.+....+ .+|++.++.|. +
T Consensus 225 pNTDGIdi~~s~nV~I~n~~I~~gDDcI-aik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~-~- 300 (443)
T PLN02793 225 PNTDGIHISASRGVVIKDSIVRTGDDCI-SIVGNSSRIKIRNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLS-N- 300 (443)
T ss_pred CCCCcEeeeccceEEEEeCEEeCCCCeE-EecCCcCCEEEEEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEe-C-
Confidence 3569999999999999999999887766 46778999999999986543 356776422222123 67999999994 4
Q ss_pred cCcCccc
Q 014647 292 VQRMPRC 298 (421)
Q Consensus 292 ~~R~Pr~ 298 (421)
..+.=|+
T Consensus 301 t~~GirI 307 (443)
T PLN02793 301 TDNGVRI 307 (443)
T ss_pred CCceEEE
Confidence 3344444
No 11
>PLN02155 polygalacturonase
Probab=98.09 E-value=6.4e-05 Score=78.25 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEE
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITIS 253 (421)
+.+..++||.|+||+|.... .....|||.+..++||+|.+|.++.+.|.+ .++.++++|+|+
T Consensus 171 i~~~~~~nv~i~~v~I~~p~-----------------~~~NtDGidi~~s~nV~I~~~~I~~gDDcI-aik~gs~nI~I~ 232 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPG-----------------NSPNTDGFHVQFSTGVTFTGSTVQTGDDCV-AIGPGTRNFLIT 232 (394)
T ss_pred EEEECeeeEEEEEEEEECCC-----------------CCCCCCccccccceeEEEEeeEEecCCceE-EcCCCCceEEEE
Confidence 33445566666666665310 023569999999999999999999998866 577889999999
Q ss_pred ceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCccc
Q 014647 254 NNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (421)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~ 298 (421)
+|.+... ..+-+|+.-.+....+ .+|++.++.|. +. .+.=|+
T Consensus 233 n~~c~~G-hGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~~GirI 275 (394)
T PLN02155 233 KLACGPG-HGVSIGSLAKELNEDGVENVTVSSSVFT-GS-QNGVRI 275 (394)
T ss_pred EEEEECC-ceEEeccccccCCCCcEEEEEEEeeEEe-CC-CcEEEE
Confidence 9999753 3466887432221223 68999999994 43 344444
No 12
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.99 E-value=0.00012 Score=76.71 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=16.4
Q ss_pred EEEEeeeccEEEEeeEEEec
Q 014647 173 CLTLQYVSHVIIHNVHIHHC 192 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~ 192 (421)
.|.++.++++.|++++|++.
T Consensus 137 gI~v~~a~~v~Iedn~L~gs 156 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGS 156 (455)
T ss_pred EEEEccCCceEEEeeEEEcC
Confidence 47778888888888888876
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.97 E-value=7.2e-05 Score=75.71 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=82.5
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEE
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITI 252 (421)
++.+..++||.|++|+|+.... ....|||.+.+++||.|++|.+....|.+ .++.++.+|+|
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~-----------------~~NtDGid~~~s~nv~I~n~~i~~gDD~I-aiks~~~ni~v 178 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPAN-----------------SPNTDGIDIDSSKNVTIENCFIDNGDDCI-AIKSGSGNILV 178 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGG-----------------CTS--SEEEESEEEEEEESEEEESSSESE-EESSEECEEEE
T ss_pred EEEEEccCCeEEcceEEEecCC-----------------CCCcceEEEEeeeEEEEEEeecccccCcc-cccccccceEE
Confidence 4667789999999999997421 13569999999999999999999987776 46777779999
Q ss_pred EceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCcccC---CCeEEEEcceEeCCccee
Q 014647 253 SNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEMYA 317 (421)
Q Consensus 253 Snn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~R---~G~~Hv~NN~y~~~~~ya 317 (421)
+||.+..... +-+|+.-....... .+|++.++.|. + ..|.-|++ .+.-.+-|=.|++..+..
T Consensus 179 ~n~~~~~ghG-isiGS~~~~~~~~~i~nV~~~n~~i~-~-t~~gi~iKt~~~~~G~v~nI~f~ni~~~~ 244 (326)
T PF00295_consen 179 ENCTCSGGHG-ISIGSEGSGGSQNDIRNVTFENCTII-N-TDNGIRIKTWPGGGGYVSNITFENITMEN 244 (326)
T ss_dssp ESEEEESSSE-EEEEEESSSSE--EEEEEEEEEEEEE-S-ESEEEEEEEETTTSEEEEEEEEEEEEEEE
T ss_pred EeEEEecccc-ceeeeccCCccccEEEeEEEEEEEee-c-cceEEEEEEecccceEEeceEEEEEEecC
Confidence 9999975333 66775322211112 57999999994 4 34555543 122333333455544433
No 14
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.95 E-value=9e-05 Score=64.45 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=81.4
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEE
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITIS 253 (421)
|.+....++.|++.+|+++ .++||.+.++..+.|+.|+|.+...|+. .....+++|+
T Consensus 3 i~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i~ 59 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTIS 59 (158)
T ss_dssp EEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EEE
T ss_pred EEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEEE
Confidence 6777888999999999974 3578999998899999999999667774 3566899999
Q ss_pred ceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccC--CCeEEEEcceEeCCcceeecC--CCCceEEee
Q 014647 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR--RGYIHVVNNDFTSWEMYAIGG--SANPTINSQ 329 (421)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R--~G~~Hv~NN~y~~~~~yaigg--~~~~~i~~e 329 (421)
+|.|.+......+-. ...+++.+|.|.. ...-.=.+. ...+.+.||.+.+-..+++.. ...+.+.++
T Consensus 60 ~~~~~~~~~~i~~~~--------~~~~~i~~~~i~~-~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~ 130 (158)
T PF13229_consen 60 NNTISDNGSGIYVSG--------SSNITIENNRIEN-NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIE 130 (158)
T ss_dssp S-EEES-SEEEECCS---------CS-EEES-EEEC-SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEE
T ss_pred CeEEEEccceEEEEe--------cCCceecCcEEEc-CCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEE
Confidence 999998773222211 1368888999853 332222222 235788899888765433322 124588889
Q ss_pred CcEEeCCC
Q 014647 330 GNRYTAPP 337 (421)
Q Consensus 330 gN~F~~~~ 337 (421)
+|.|....
T Consensus 131 ~n~i~~~~ 138 (158)
T PF13229_consen 131 NNTISNNG 138 (158)
T ss_dssp CEEEECES
T ss_pred EEEEEeCc
Confidence 99998754
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.92 E-value=0.00049 Score=72.50 Aligned_cols=138 Identities=16% Similarity=0.160 Sum_probs=93.0
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEec-----CCCCeeeeeeCC
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGS 247 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~-----~~DGliDv~~gs 247 (421)
.|++.+++|+.|++|+|++.. . =.|++..|+||.|++.++.. -.||+ |+ ..+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp-~--------------------w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQ-Q--------------------IQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcCC-C--------------------EEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-ccc
Confidence 478889999999999999851 1 25888999999999999875 56888 74 678
Q ss_pred ceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCc------CcCccc-CCCeEEEEcceEeCCcc-----
Q 014647 248 TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALV------QRMPRC-RRGYIHVVNNDFTSWEM----- 315 (421)
Q Consensus 248 ~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~------~R~Pr~-R~G~~Hv~NN~y~~~~~----- 315 (421)
++|+|++|.|...|...-+.+.. .+|++.++.+..++. .+.+.- ..-.++|-|+.+.+...
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIK 323 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIK 323 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEe
Confidence 99999999999988877776431 478888887753321 000100 00146677776665321
Q ss_pred -eeecCCCCceEEeeCcEEeCCCCCC
Q 014647 316 -YAIGGSANPTINSQGNRYTAPPDDN 340 (421)
Q Consensus 316 -yaigg~~~~~i~~egN~F~~~~~~~ 340 (421)
+.-+++.-..|.+++...+....|.
T Consensus 324 T~~Gg~G~v~nI~f~ni~m~~V~~pI 349 (431)
T PLN02218 324 TYQGGSGTASNIIFQNIQMENVKNPI 349 (431)
T ss_pred ecCCCCeEEEEEEEEeEEEEcccccE
Confidence 1112223345777888887766553
No 16
>PLN03010 polygalacturonase
Probab=97.88 E-value=0.00061 Score=71.35 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=90.1
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCc-------cccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeee
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTH-------VGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIM 245 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~-------~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~ 245 (421)
.|++.+++|+.|++|++++. |.|...+.....- .........|||.+..++||+|.+|.+....|.+ .++.
T Consensus 159 ~l~~~~~~nv~v~gitl~ns-p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcI-aiks 236 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS-PKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCI-AINS 236 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC-CceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeE-EecC
Confidence 46777888888888888776 2232222111000 0011124679999999999999999999997766 5777
Q ss_pred CCceEEEEceEeccCCeeeeecCCCccc-CCCCceEEEEceEecCCCcCcCcccC---CCeEEEEcceEeCCcceeecCC
Q 014647 246 GSTGITISNNYFSHHNEVMLLGHNDKYA-LDMGMQVTIAFNHFGVALVQRMPRCR---RGYIHVVNNDFTSWEMYAIGGS 321 (421)
Q Consensus 246 gs~~ITISnn~f~~h~k~~L~G~sd~~~-~d~g~~VTihhN~f~~n~~~R~Pr~R---~G~~Hv~NN~y~~~~~yaigg~ 321 (421)
++++++|.++..... ...-+|+.-+.. .+.-.+|++.++.|. + .++.=|++ .|.-.+-|=.|.+..+...
T Consensus 237 gs~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i~-~-t~~GirIKt~~G~~G~v~nItf~nI~m~~v--- 310 (409)
T PLN03010 237 GSSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTFN-Q-TTNGARIKTWQGGQGYARNISFENITLINT--- 310 (409)
T ss_pred CCCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEEe-C-CCcceEEEEecCCCEEEEEeEEEeEEEecC---
Confidence 888888887766532 235567643322 122268999999994 4 33444443 2233444444555544332
Q ss_pred CCceEEeeCcEEe
Q 014647 322 ANPTINSQGNRYT 334 (421)
Q Consensus 322 ~~~~i~~egN~F~ 334 (421)
..| |.+.-+|..
T Consensus 311 ~~p-I~I~q~Y~~ 322 (409)
T PLN03010 311 KNP-IIIDQQYID 322 (409)
T ss_pred Ccc-EEEEeeccC
Confidence 223 555555543
No 17
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.88 E-value=0.00075 Score=70.97 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=76.7
Q ss_pred hhHHHHHhcC--CCeEEEEecceEEeecceEEecCCcEEEeecceE--EEecce-EEEEeeeccEEEEeeEEEecccCCC
Q 014647 123 GTLRHAVIQT--EPIWITFASNMLIKLKHELIINSYKTIDGRGANV--EITGNG-CLTLQYVSHVIIHNVHIHHCKPSGN 197 (421)
Q Consensus 123 GsLR~av~~~--~P~~IvF~~~g~I~l~~~L~I~snkTI~G~ga~i--~I~ggg-~i~i~~a~NVIIrnL~ir~~~~~~~ 197 (421)
..|++|+.+- +--.|++..+ +- +...|.+.+++||.|+.... .|.|.+ .+.-..++||.|++++|++.-
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG---- 128 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGGG---- 128 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeCC----
Confidence 4588887552 2234555442 21 23678889999999985432 355443 332347999999999998741
Q ss_pred ceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecC-CCCeeeeeeCCceEEEEceEec
Q 014647 198 TMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC-TDGLIDAIMGSTGITISNNYFS 258 (421)
Q Consensus 198 ~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~-~DGliDv~~gs~~ITISnn~f~ 258 (421)
.......-+|.+.+|+++-|.+|++... ..|++ .+++. ..|++|.+.
T Consensus 129 -----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 -----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTIT 176 (455)
T ss_pred -----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEe
Confidence 1112344588999999999999999998 48885 45666 555555554
No 18
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.72 E-value=0.0015 Score=69.35 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=81.2
Q ss_pred CCcEEEeecceEEEecceEEEEeeeccEEEEeeEEEecccC--CCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEE
Q 014647 155 SYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPS--GNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCS 232 (421)
Q Consensus 155 snkTI~G~ga~i~I~ggg~i~i~~a~NVIIrnL~ir~~~~~--~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs 232 (421)
.+++|.|.| +|.|.|...- ....-.=+-|+|.++... .+.+++++| .=.|++.+|++|.|++.+
T Consensus 113 ~~i~I~G~G---tIDGqG~~wW-~~~~~rP~~l~f~~~~nv~I~gitl~NSp----------~w~i~i~~c~nV~i~~l~ 178 (456)
T PLN03003 113 EGLVIEGDG---EINGQGSSWW-EHKGSRPTALKFRSCNNLRLSGLTHLDSP----------MAHIHISECNYVTISSLR 178 (456)
T ss_pred cceEEeccc---eEeCCchhhh-hcccCCceEEEEEecCCcEEeCeEEecCC----------cEEEEEeccccEEEEEEE
Confidence 578888865 5777662221 111222334555554310 112334433 235788899999999999
Q ss_pred Eec-----CCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCC------cCcCcc-cCC
Q 014647 233 LSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL------VQRMPR-CRR 300 (421)
Q Consensus 233 ~s~-----~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~------~~R~Pr-~R~ 300 (421)
+.. -.||+ |+ ..|++|+|.+|.+...|...-+.+.. .+|++.++.++.++ ..+... -..
T Consensus 179 I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 179 INAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred EeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 976 46887 74 68899999999999998877776532 35677666653221 111000 001
Q ss_pred CeEEEEcceEeC
Q 014647 301 GYIHVVNNDFTS 312 (421)
Q Consensus 301 G~~Hv~NN~y~~ 312 (421)
-.++|.|+.+++
T Consensus 250 ~NV~v~n~~~~~ 261 (456)
T PLN03003 250 ENVCVQNCNFRG 261 (456)
T ss_pred EEEEEEeeEEEC
Confidence 147788888765
No 19
>PLN03010 polygalacturonase
Probab=97.59 E-value=0.0034 Score=65.84 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=72.7
Q ss_pred ceeeeCCccEEEEeEEEec-----CCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCC
Q 014647 217 GISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVAL 291 (421)
Q Consensus 217 aI~i~gs~nVWIDHcs~s~-----~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~ 291 (421)
.|++.++++|.|++.++.. -.||+ |+ ..+++|+|++|.+...|...-+.+... ...|+...+..+|+.
T Consensus 182 ~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGi 254 (409)
T PLN03010 182 HISIKTCNYVAISKINILAPETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGI 254 (409)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCE
Confidence 5888899999999999865 56888 74 679999999999999998877765321 245555555544331
Q ss_pred ----cCcCcc-cCCCeEEEEcceEeCCcc----eee-c-CCCCceEEeeCcEEeCCCCCC
Q 014647 292 ----VQRMPR-CRRGYIHVVNNDFTSWEM----YAI-G-GSANPTINSQGNRYTAPPDDN 340 (421)
Q Consensus 292 ----~~R~Pr-~R~G~~Hv~NN~y~~~~~----yai-g-g~~~~~i~~egN~F~~~~~~~ 340 (421)
...... .-.-.++|.|+.+++-.. -.. | ++.-..|.+++-.++....|.
T Consensus 255 sIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 255 SVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred EEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccE
Confidence 001000 001246777777765321 111 1 112235677777777766554
No 20
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.42 E-value=0.0073 Score=57.64 Aligned_cols=63 Identities=29% Similarity=0.326 Sum_probs=33.7
Q ss_pred CceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEec
Q 014647 216 DGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFG 288 (421)
Q Consensus 216 DaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~ 288 (421)
.||.+..+.+..|..|.|+...+|++ ...+...+|++|.|.+....+.+-.+ .+.++.+|.|.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI~--l~~s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~ 142 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGIY--LYGSSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTIS 142 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceEE--EeeCCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEe
Confidence 55666655555666666666665553 34555566666666544443333222 13455566664
No 21
>PLN02155 polygalacturonase
Probab=97.40 E-value=0.0018 Score=67.64 Aligned_cols=142 Identities=19% Similarity=0.262 Sum_probs=94.2
Q ss_pred eEEEEecceEEeecceEEecCCcEEEeecceEEEe---c------ceEEEEeeeccEEEEeeEEEecccCCCceeeCCCC
Q 014647 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVEIT---G------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPT 205 (421)
Q Consensus 135 ~~IvF~~~g~I~l~~~L~I~snkTI~G~ga~i~I~---g------gg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~ 205 (421)
.||.|..- +.+.|.. =||+|||..---. + .-.|++.+++||.|++|++++. |.
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-p~---------- 168 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-QV---------- 168 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-CC----------
Confidence 47766532 2334433 5888888641110 0 0137888999999999999975 21
Q ss_pred ccccCcCCCCCceeeeCCccEEEEeEEEec-----CCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceE
Q 014647 206 HVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQV 280 (421)
Q Consensus 206 ~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~-----~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~V 280 (421)
=.|++.+|+||.|+|.++.. -.||+ | ...+++|+|++|.|...|....++... .+|
T Consensus 169 ----------w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-d-i~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 169 ----------SHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-H-VQFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred ----------eEEEEECeeeEEEEEEEEECCCCCCCCCcc-c-cccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 14788899999999999965 45887 6 467999999999999998887776542 367
Q ss_pred EEEceEecCCC------cCcCc-ccCCCeEEEEcceEeCC
Q 014647 281 TIAFNHFGVAL------VQRMP-RCRRGYIHVVNNDFTSW 313 (421)
Q Consensus 281 TihhN~f~~n~------~~R~P-r~R~G~~Hv~NN~y~~~ 313 (421)
++.++.+..++ ..+.+ .-..-.+.|.|+.+.+.
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 77776664321 11112 11112577888888753
No 22
>PLN02480 Probable pectinesterase
Probab=97.29 E-value=0.011 Score=60.81 Aligned_cols=120 Identities=17% Similarity=0.292 Sum_probs=81.7
Q ss_pred hhHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecce-EEEec---------ceEEEEeeeccEEEE
Q 014647 123 GTLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN-VEITG---------NGCLTLQYVSHVIIH 185 (421)
Q Consensus 123 GsLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~-i~I~g---------gg~i~i~~a~NVIIr 185 (421)
-|+.+|+.+ +..+++|+=..|+- ++.|.| .+|+||.|.+.. ..|.+ .+.+++ .+++++++
T Consensus 61 ~TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~ 137 (343)
T PLN02480 61 TSVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAF 137 (343)
T ss_pred ccHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEE
Confidence 478888854 23466666666654 466777 468999998744 33432 335667 57999999
Q ss_pred eeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 186 NVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 186 nL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
||+|++..+.+. ....++-|+-+. .++++.+.+|.|....|=|++- ...--+.+|+++.+
T Consensus 138 nLTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 138 GISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eeEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 999999753211 011234566664 6899999999999999998852 34566777877744
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.27 E-value=0.0026 Score=55.23 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=69.2
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEE
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITI 252 (421)
+|.+....++.|++.+|++ .+.+|.+.+..++.|+.|.++.+..|+. ...+..++|
T Consensus 25 gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~~~i~--~~~~~~~~i 80 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNGSGIY--VSGSSNITI 80 (158)
T ss_dssp CEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-SEEEE--CCS-CS-EE
T ss_pred EEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEccceEE--EEecCCcee
Confidence 3667666677777777774 2467888888888888888888874443 347788888
Q ss_pred EceEeccCCe-eeeecCCCcccCCCCceEEEEceEecCCCcCcCcccC-CC--eEEEEcceEeCCcceeecCCCCc-eEE
Q 014647 253 SNNYFSHHNE-VMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RG--YIHVVNNDFTSWEMYAIGGSANP-TIN 327 (421)
Q Consensus 253 Snn~f~~h~k-~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R-~G--~~Hv~NN~y~~~~~yaigg~~~~-~i~ 327 (421)
++|.|.+... .+.+.. ....+++.+|.|..+ .+..=.+. .. .+-+.+|.+++-..+++...... .+.
T Consensus 81 ~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~-~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~ 152 (158)
T PF13229_consen 81 ENNRIENNGDYGIYISN-------SSSNVTIENNTIHNN-GGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCT 152 (158)
T ss_dssp ES-EEECSSS-SCE-TC-------EECS-EEES-EEECC-TTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--E
T ss_pred cCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeC-cceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEE
Confidence 8888887644 333321 123578888888533 21111111 12 46668888877666666433333 377
Q ss_pred eeCcEE
Q 014647 328 SQGNRY 333 (421)
Q Consensus 328 ~egN~F 333 (421)
+.+|.|
T Consensus 153 v~~n~~ 158 (158)
T PF13229_consen 153 VTNNTF 158 (158)
T ss_dssp EES-E-
T ss_pred EECCCC
Confidence 777776
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.25 E-value=0.0052 Score=58.68 Aligned_cols=129 Identities=21% Similarity=0.190 Sum_probs=92.7
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEE
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITIS 253 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITIS 253 (421)
+.+..+.++.|++.+|+++ ..||.+.+++++-|..|.++.+.+|+. ...+.+.+|+
T Consensus 38 i~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~~I~ 93 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNNTIS 93 (236)
T ss_pred EEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCcEEE
Confidence 5677888999999988863 368999999999999999999999986 4566666999
Q ss_pred ceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccCC-CeEEEEcceEeCCcceeec-CCCCceEEeeCc
Q 014647 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRR-GYIHVVNNDFTSWEMYAIG-GSANPTINSQGN 331 (421)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R~-G~~Hv~NN~y~~~~~yaig-g~~~~~i~~egN 331 (421)
+|.|.+.....++-.++ ..++..|.|. + ....-.+.. ....+.+|.+.+-..|++. ......-.+.+|
T Consensus 94 ~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~-~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N 163 (236)
T PF05048_consen 94 NNTISNNGYGIYLYGSS--------NNTISNNTIS-N-NGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNN 163 (236)
T ss_pred CCEecCCCceEEEeeCC--------ceEEECcEEe-C-CCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECC
Confidence 99999876655443332 4678888885 3 222223322 4678889998877566655 334445777889
Q ss_pred EEeCC
Q 014647 332 RYTAP 336 (421)
Q Consensus 332 ~F~~~ 336 (421)
+|...
T Consensus 164 ~f~N~ 168 (236)
T PF05048_consen 164 NFNNS 168 (236)
T ss_pred CccCE
Confidence 99433
No 25
>PLN02197 pectinesterase
Probab=97.24 E-value=0.0049 Score=67.30 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=96.3
Q ss_pred Ccchh--hcccccccCCCCCCCCCCCCCCCc---EEEEcCCCCCCCCCCCch---hHHHHHhc----CCCeEEEEecceE
Q 014647 77 DPNWA--ANRQRLADCSVGFAQGTLGGKGGQ---IYVVTDSSDSDPANPTPG---TLRHAVIQ----TEPIWITFASNML 144 (421)
Q Consensus 77 ~~~w~--~~~~~la~~a~GfG~~ttGG~gG~---vy~VT~~~D~~~~~p~pG---sLR~av~~----~~P~~IvF~~~g~ 144 (421)
-|.|- .+|+-|+ +.+.|.++-||.++. .++|.- | |.| |+.+||.. +..++||+=..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 46786 5577775 356667777777654 233421 1 333 67788854 3346777766776
Q ss_pred EeecceEEe---cCCcEEEeecceEEEe-c--------------ceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCc
Q 014647 145 IKLKHELII---NSYKTIDGRGANVEIT-G--------------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTH 206 (421)
Q Consensus 145 I~l~~~L~I---~snkTI~G~ga~i~I~-g--------------gg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~ 206 (421)
.++.+.| .+|+||.|.|..-+|. + .+.+.+ .+++++.+||+|++...
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag------------ 378 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAG------------ 378 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCC------------
Confidence 3455666 3689999998763332 1 123444 57999999999998631
Q ss_pred cccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 207 VGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 207 ~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
. ...-|+-++ .++..-+.+|+|....|=|++- +..--..+|+++..
T Consensus 379 --~---~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~Gt 425 (588)
T PLN02197 379 --P---MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVSGT 425 (588)
T ss_pred --C---CCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEEec
Confidence 0 122355555 5799999999999999988752 33456666776643
No 26
>PLN02793 Probable polygalacturonase
Probab=97.22 E-value=0.0045 Score=65.56 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=68.7
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEec-----CCCCeeeeeeCC
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGS 247 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~-----~~DGliDv~~gs 247 (421)
.|++.+++||.|++|++++.. . =.|.+.+|+||.|++.++.. -.||+ | ...+
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp-~--------------------~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQ-Q--------------------MHIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISAS 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcCC-C--------------------eEEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eecc
Confidence 478889999999999999751 1 14778899999999999975 46888 6 4688
Q ss_pred ceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEec
Q 014647 248 TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFG 288 (421)
Q Consensus 248 ~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~ 288 (421)
++|+|++|.+...|....+.... .+|++.++.+.
T Consensus 236 ~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~ 269 (443)
T PLN02793 236 RGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACG 269 (443)
T ss_pred ceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEe
Confidence 99999999999998887775421 36788777764
No 27
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.16 E-value=0.014 Score=54.00 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.6
Q ss_pred hHHHHH--hc-CCCeEEEEecceEEeecceEEecCCcEEEeecc
Q 014647 124 TLRHAV--IQ-TEPIWITFASNMLIKLKHELIINSYKTIDGRGA 164 (421)
Q Consensus 124 sLR~av--~~-~~P~~IvF~~~g~I~l~~~L~I~snkTI~G~ga 164 (421)
.|.+|+ .+ .+..+|.| ..|+-.+++.|.+.+++||.|.|.
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCC
Confidence 477887 33 44566666 457888888899999999999765
No 28
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.13 E-value=0.0021 Score=65.13 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=76.3
Q ss_pred EEecCCcEEEeecceEE-Eec---------ceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceee
Q 014647 151 LIINSYKTIDGRGANVE-ITG---------NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISI 220 (421)
Q Consensus 151 L~I~snkTI~G~ga~i~-I~g---------gg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i 220 (421)
+.+.-.=||+|+|..-. ..+ .-.|++.+++|+.|++|+|++.. .| .+++
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp--------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP--------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S--------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC--------------ee-------EEEE
Confidence 34444459999987300 001 12478889999999999999751 12 5788
Q ss_pred eCCccEEEEeEEEec-----CCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecC
Q 014647 221 FGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGV 289 (421)
Q Consensus 221 ~gs~nVWIDHcs~s~-----~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~ 289 (421)
..++||+|+|.++.. -.||+ |+ ..+++|+|.+|.+...+...-+.+.. .+|++.+++|..
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~-------~ni~v~n~~~~~ 185 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGS-------GNILVENCTCSG 185 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEE-------CEEEEESEEEES
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCcccccccc-------cceEEEeEEEec
Confidence 899999999999975 36888 64 57899999999999888876665432 178898998853
No 29
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.99 E-value=0.063 Score=55.81 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=120.8
Q ss_pred HHHHHhcCCCeEEEEecceEEeecceEEecCCcEEEeecceEEEecce--EEEE---------eeeccEEEEeeEEEecc
Q 014647 125 LRHAVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNG--CLTL---------QYVSHVIIHNVHIHHCK 193 (421)
Q Consensus 125 LR~av~~~~P~~IvF~~~g~I~l~~~L~I~snkTI~G~ga~i~I~ggg--~i~i---------~~a~NVIIrnL~ir~~~ 193 (421)
|-+++.+-. -|..+.+-+-+++++|.|.+-.+|+|+||-+.|.+-+ .+++ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 666666533 3555555566778899999999999999998885432 2433 3456888888888742
Q ss_pred cCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCccc
Q 014647 194 PSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYA 273 (421)
Q Consensus 194 ~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~ 273 (421)
..-.|+-+...+++.|-.|+|....--.++. .....|..|+|..-++++. +.+.
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~---~~~~~VrGC~F~~C~~gi~-~~~~--- 187 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLES---WAGGEVRGCTFYGCWKGIV-SRGK--- 187 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEE---cCCcEEeeeEEEEEEEEee-cCCc---
Confidence 1235677788999999999999987766654 3678899999987777653 2211
Q ss_pred CCCCceEEEEceEecCCCcCcCcccCCCeEEEEcceEeCCcceeecCCCCceEEeeCcEEeCCCC
Q 014647 274 LDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTINSQGNRYTAPPD 338 (421)
Q Consensus 274 ~d~g~~VTihhN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~ 338 (421)
.++++.+|.| +.+.= =-+-.|.+++.+|...+-.-...- +.+-.+.+|.|..+..
T Consensus 188 ----~~lsVk~C~F-ekC~i--gi~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 188 ----SKLSVKKCVF-EKCVI--GIVSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVCGPND 242 (386)
T ss_pred ----ceEEeeheee-eheEE--EEEecCCeEEecceecccceEEEE---cccEEEeccEEeCCCC
Confidence 4788899999 43321 112357899999998876543332 2245678888887655
No 30
>PLN02682 pectinesterase family protein
Probab=96.88 E-value=0.027 Score=58.39 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=77.1
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------------ceEEEEe
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------------NGCLTLQ 177 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------------gg~i~i~ 177 (421)
|+.+||.. +..+++|+=..|+- ++.|.| .+|+||.|.|..-+ |.. -+.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 67777743 23356666556653 455666 57999999986633 321 123445
Q ss_pred eeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceE
Q 014647 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNY 256 (421)
Q Consensus 178 ~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~ 256 (421)
.+++++.+||+|++..+... .| ..+.-|+-+. .++++-+.+|.|....|=|++ ....--..+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~---------~g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~---~~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP---------PG---ALGKQAVALRISADTAAFYGCKFLGAQDTLYD---HLGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccCC---------CC---CCcccEEEEEecCCcEEEEcceEeccccceEE---CCCCEEEEeeE
Confidence 57899999999998753100 01 1122345444 579999999999999999986 23456777888
Q ss_pred eccC
Q 014647 257 FSHH 260 (421)
Q Consensus 257 f~~h 260 (421)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 8754
No 31
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.82 E-value=0.017 Score=60.65 Aligned_cols=169 Identities=21% Similarity=0.259 Sum_probs=104.7
Q ss_pred eEEEEecceEEeecceEEecCCcEEEeecceEE------Ee-c----ceEEEEeeeccEEEEeeEEEecccCCCceeeCC
Q 014647 135 IWITFASNMLIKLKHELIINSYKTIDGRGANVE------IT-G----NGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASS 203 (421)
Q Consensus 135 ~~IvF~~~g~I~l~~~L~I~snkTI~G~ga~i~------I~-g----gg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~ 203 (421)
.||.|.. -..|.|...=||+|+|..-- .. + .-.|.+..++||.|++|+|++.. .
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp-~-------- 178 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK-F-------- 178 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC-C--------
Confidence 4777741 12345544568888876310 00 0 11467889999999999999851 1
Q ss_pred CCccccCcCCCCCceeeeCCccEEEEeEEEec-----CCCCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCc
Q 014647 204 PTHVGYRGKSDGDGISIFGSQKIWVDHCSLSY-----CTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGM 278 (421)
Q Consensus 204 ~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~-----~~DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~ 278 (421)
=.|++..|+||.|++.++.. -.||+ | ...+++|+|.+|.|...+...-++... .
T Consensus 179 ------------w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 179 ------------FHIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ------------eEEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 25788899999999999875 46888 6 468899999999999998877775432 2
Q ss_pred eEEEEceEecCCC------cCcCcc-cCCCeEEEEcceEeCCcc--e--ee----cCCCCceEEeeCcEEeCCCCC
Q 014647 279 QVTIAFNHFGVAL------VQRMPR-CRRGYIHVVNNDFTSWEM--Y--AI----GGSANPTINSQGNRYTAPPDD 339 (421)
Q Consensus 279 ~VTihhN~f~~n~------~~R~Pr-~R~G~~Hv~NN~y~~~~~--y--ai----gg~~~~~i~~egN~F~~~~~~ 339 (421)
+|++.++....++ ..+.+- -....+.|-|+.+++-.. + .. +++.-..|.+++-.++....|
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 6777666663221 011010 011246788888776421 1 11 111123566777666665544
No 32
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=96.80 E-value=0.0004 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.2
Q ss_pred cCCCCCCCChhHHHHHHhhhhhhcc
Q 014647 28 LTLPHQHPDPDAVAQDVQRRVNVSL 52 (421)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (421)
.++++|+|||++|+++||+.|+.++
T Consensus 19 ~a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 19 AALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999766
No 33
>PLN02304 probable pectinesterase
Probab=96.57 E-value=1.2 Score=46.46 Aligned_cols=136 Identities=14% Similarity=0.241 Sum_probs=86.9
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. +..+++|+=..|+ .++.|.| .+|+||.|+|..-+| .. .+.+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 67788743 2346666666675 3466777 479999999866333 21 123445 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCe
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNE 262 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k 262 (421)
.+||+|++..+... + + ...+-|+-+. .++.+-+.+|.|....|=|++- ...--+.+|++..+-.
T Consensus 166 a~nITf~Nta~~~~------~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~VD 230 (379)
T PLN02304 166 AKNISFMNVAPIPK------P---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGSID 230 (379)
T ss_pred EEeeEEEecCCCCC------C---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccccc
Confidence 99999998753110 0 1 1123355554 5799999999999999999862 3456677888875422
Q ss_pred eeeecCCCcccCCCCceEEEEceEe
Q 014647 263 VMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 263 ~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
.++|.. +.-|.+|.+
T Consensus 231 -FIFG~g---------~A~Fe~C~I 245 (379)
T PLN02304 231 -FIFGDA---------RSLYENCRL 245 (379)
T ss_pred -EEeccc---------eEEEEccEE
Confidence 244532 455555655
No 34
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.034 Score=56.75 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=58.0
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEE
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITI 252 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITI 252 (421)
.|.+.++..+.|...+|..-. ..|-..-|+||+++.+..+-|-.+.+|..+||++ ..-|+.-+|
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~--------------~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy--~~~S~~~~~ 185 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLA--------------DLRVAERGNGIYVYNAPGALVVGNDISYGRDGIY--SDTSQHNVF 185 (408)
T ss_pred EEEEeccCceEEEeeEEeecc--------------ccchhhccCceEEEcCCCcEEEcCccccccceEE--Eccccccee
Confidence 378889999999999998642 1122456899999999999999999999999998 456778888
Q ss_pred EceEecc
Q 014647 253 SNNYFSH 259 (421)
Q Consensus 253 Snn~f~~ 259 (421)
+.|.|++
T Consensus 186 ~gnr~~~ 192 (408)
T COG3420 186 KGNRFRD 192 (408)
T ss_pred cccchhh
Confidence 8887774
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.54 E-value=0.18 Score=49.73 Aligned_cols=188 Identities=21% Similarity=0.214 Sum_probs=102.1
Q ss_pred hhHHHHHhcCCCeEEEEecceEEeec----ceEEecCCcEEEeec----c-eEE---------Eecce------EEEEee
Q 014647 123 GTLRHAVIQTEPIWITFASNMLIKLK----HELIINSYKTIDGRG----A-NVE---------ITGNG------CLTLQY 178 (421)
Q Consensus 123 GsLR~av~~~~P~~IvF~~~g~I~l~----~~L~I~snkTI~G~g----a-~i~---------I~ggg------~i~i~~ 178 (421)
-|+.+|+.+..|-.+|.=..|+-+-. -+|.+.+.+||.|.. . .+. |.|.+ .++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 46778886655443333344555432 246777888888752 2 122 22221 245556
Q ss_pred eccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecC-CCCeeeeee----CCceEEEE
Q 014647 179 VSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC-TDGLIDAIM----GSTGITIS 253 (421)
Q Consensus 179 a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~-~DGliDv~~----gs~~ITIS 253 (421)
.++..|++++|++.. ...+-||.|.++ +.-|..|+|+.+ .+|+..... ...+++|+
T Consensus 96 ~~~~~i~GvtItN~n------------------~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPN------------------IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCC------------------CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 777888888888641 124568888777 999999999996 777643221 33567788
Q ss_pred ceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCc-----CcCcccCCC-eEEEEcceEeCCcceeecCCC--Cce
Q 014647 254 NNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALV-----QRMPRCRRG-YIHVVNNDFTSWEMYAIGGSA--NPT 325 (421)
Q Consensus 254 nn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~-----~R~Pr~R~G-~~Hv~NN~y~~~~~yaigg~~--~~~ 325 (421)
.|.+.......-+ ++.... ..-.+-+|++.+|.. ...|-+-.+ .-.+-||.+.+-+.|.+.-.. .-+
T Consensus 157 GN~~~~~~~Gi~i--~~~~~~---~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 157 GNSIYFNKTGISI--SDNAAP---VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred cceEEecCcCeEE--EcccCC---ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 8776643221111 111100 112335566643321 011332221 223566777776666665422 236
Q ss_pred EEeeCcEEe
Q 014647 326 INSQGNRYT 334 (421)
Q Consensus 326 i~~egN~F~ 334 (421)
+.+.||...
T Consensus 232 l~a~gN~ld 240 (246)
T PF07602_consen 232 LYAVGNQLD 240 (246)
T ss_pred EEEeCCccC
Confidence 777777654
No 36
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.033 Score=60.33 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=73.0
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeee----------
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLID---------- 242 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliD---------- 242 (421)
++..+.++|+.++||+|.... ....|||.+..|+||-|+.|.|+.+.|-+.=
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~ 324 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKK 324 (542)
T ss_pred EEeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEecCCceEEeecccCCcccc
Confidence 356678999999999998532 1156999999999999999999997774421
Q ss_pred eeeCCceEEEEceEeccCCeeeeecCCCcccCCCC-ceEEEEceEecCCCcCcCccc
Q 014647 243 AIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMG-MQVTIAFNHFGVALVQRMPRC 298 (421)
Q Consensus 243 v~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g-~~VTihhN~f~~n~~~R~Pr~ 298 (421)
....+.+|+|++|+|.....+..+|+.- +.+ ..|++-.|.| .+ ..|.=|+
T Consensus 325 ~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 325 GYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred cccccccEEEecceecccccceEeeeec----CCceeEEEEEeeee-cc-Ccceeee
Confidence 1123578999999999765566666432 223 5789999999 34 4455554
No 37
>PLN02176 putative pectinesterase
Probab=96.53 E-value=0.061 Score=55.26 Aligned_cols=120 Identities=17% Similarity=0.219 Sum_probs=79.6
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEEe---------cceEEEEeeeccEEEEee
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT---------GNGCLTLQYVSHVIIHNV 187 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I~---------ggg~i~i~~a~NVIIrnL 187 (421)
|+.+||.. +..+++|+-..|+-+ +.|.| .+|+||.|.|...+|. +.+.+++ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67778743 334667777777644 55666 4699999998763332 2335666 6899999999
Q ss_pred EEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 188 ~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
+|++..+... ++ ....+-|+-+. .++.+-+.+|.|....|=|++ ....--..+|+++.+
T Consensus 130 T~~Nt~~~~~-----~~------~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~---~~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS-----NS------SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFD---GKGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC-----CC------CCCccceEEEEecCccEEEEccEEecccceeEe---CCcCEEEEecEEEec
Confidence 9999753110 00 01123455544 478999999999999998886 234566777777744
No 38
>PLN02665 pectinesterase family protein
Probab=96.44 E-value=0.17 Score=52.45 Aligned_cols=127 Identities=14% Similarity=0.197 Sum_probs=81.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec-----------ceEEEEeeeccEEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG-----------NGCLTLQYVSHVII 184 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g-----------gg~i~i~~a~NVII 184 (421)
|+.+|+.. +..++|||=..|+- ++.|.| .+++||.|.+...+ |.. .+.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 67788743 33467777677764 456666 47899999976522 321 134455 6899999
Q ss_pred EeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCee
Q 014647 185 HNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEV 263 (421)
Q Consensus 185 rnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~ 263 (421)
+||+|++..+...+ . ..++-|+-+. .++.+-+.+|.|....|=|++- ...--..+|++...-.
T Consensus 159 ~nitf~Nta~~~~~----------~--~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG~VD- 222 (366)
T PLN02665 159 ANIIIKNSAPRPDG----------K--RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEGTVD- 222 (366)
T ss_pred EeeEEEeCCCCcCC----------C--CCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEeeccc-
Confidence 99999997542110 0 1112344443 4689999999999999999862 3456677888775422
Q ss_pred eeecCC
Q 014647 264 MLLGHN 269 (421)
Q Consensus 264 ~L~G~s 269 (421)
.++|..
T Consensus 223 FIFG~g 228 (366)
T PLN02665 223 FIFGSG 228 (366)
T ss_pred eecccc
Confidence 245543
No 39
>smart00656 Amb_all Amb_all domain.
Probab=96.26 E-value=0.33 Score=45.66 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=79.4
Q ss_pred CCcEEEeecceEEEecceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCc-eeee-CCccEEEEeEE
Q 014647 155 SYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCS 232 (421)
Q Consensus 155 snkTI~G~ga~i~I~ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDa-I~i~-gs~nVWIDHcs 232 (421)
-|++|.+.... ...++-.|.+..++||.|.++.|..... .+.. ....|+ +.+. ++++|=|-.|.
T Consensus 45 rnl~i~~~~~~-~~~~~D~i~~~~~~~VwIDHct~s~~~~------------~~~~-~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPV-YGSDGDAISIDGSSNVWIDHVSLSGCTV------------TGFG-DDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccC-CCCCCCEEEEeCCCeEEEEccEeEccee------------ccCC-CCCCCccEEECcccccEEEECce
Confidence 46777764321 1012224888899999999999987421 0110 112334 4444 57888888888
Q ss_pred EecCCCCeeeeeeCC------ceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccC-CCeEEE
Q 014647 233 LSYCTDGLIDAIMGS------TGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR-RGYIHV 305 (421)
Q Consensus 233 ~s~~~DGliDv~~gs------~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R-~G~~Hv 305 (421)
|....-+.+--...+ .+||+.+|+|.+...-+. .-+..++-+.+|+|. +..+..--++ .+.+.+
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P--------~~r~g~~hv~NN~~~-n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAP--------RVRFGYVHVYNNYYT-GWTSYAIGGRMGATILS 181 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcccCCC--------cccCCEEEEEeeEEe-CcccEeEecCCCcEEEE
Confidence 876655554211111 279999999986432111 111126788899994 4443332333 357999
Q ss_pred EcceEeC
Q 014647 306 VNNDFTS 312 (421)
Q Consensus 306 ~NN~y~~ 312 (421)
-||+|++
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 9999975
No 40
>PLN02432 putative pectinesterase
Probab=96.05 E-value=0.14 Score=51.73 Aligned_cols=130 Identities=14% Similarity=0.260 Sum_probs=84.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEEe---------cceEEEEeeeccEEEEee
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT---------GNGCLTLQYVSHVIIHNV 187 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I~---------ggg~i~i~~a~NVIIrnL 187 (421)
|+.+||.. +..+++||-..|+- ++.|.| .+|+||.|.+..-+|. +.+.+.+ .+++++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 56777743 33355666556653 455666 4799999987663332 2234555 5799999999
Q ss_pred EEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCeeeee
Q 014647 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLL 266 (421)
Q Consensus 188 ~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k~~L~ 266 (421)
+|++.... .+-|+-+. .++++-+.+|.|....|=|++ ....--+.+|++..+-. +++
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~---~~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLD---DTGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEE---CCCCEEEEeCEEEeccc-EEe
Confidence 99986421 12345444 579999999999999998885 23456677888775422 345
Q ss_pred cCCCcccCCCCceEEEEceEe
Q 014647 267 GHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 267 G~sd~~~~d~g~~VTihhN~f 287 (421)
|.. +.-|++|.+
T Consensus 160 G~g---------~a~Fe~c~i 171 (293)
T PLN02432 160 GNA---------ASLFEKCHL 171 (293)
T ss_pred cCc---------eEEEEeeEE
Confidence 532 455566665
No 41
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.03 E-value=0.09 Score=57.17 Aligned_cols=114 Identities=15% Similarity=0.199 Sum_probs=76.6
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eecc------------eEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~gg------------g~i~i~~a~NVI 183 (421)
|+.+||.. +..++||+-..|+- ++.+.| .+|+||.|.|...+ |.+. +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 56777743 34577777777764 455666 47999999987633 3321 24555 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
.+||+|++.... ..+-|+-+. .++++-+-+|.|....|=|++ .+..--..+|+++..
T Consensus 321 a~nitf~Ntag~-----------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~---~~~Rqyy~~C~I~Gt 378 (541)
T PLN02416 321 ARDITIENTAGP-----------------EKHQAVALRVNADLVALYRCTINGYQDTLYV---HSFRQFYRECDIYGT 378 (541)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCccEEEEcceEecccchhcc---CCCceEEEeeEEeec
Confidence 999999986310 112344444 478999999999999998874 244556777777643
No 42
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.00 E-value=0.17 Score=55.09 Aligned_cols=131 Identities=12% Similarity=0.192 Sum_probs=82.9
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. +..++|||-..|+- ++.|.| .+|+||.|.|..-+ |.+ .+.+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 57777743 33467777667754 345555 47999999986633 332 122334 679999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCe
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNE 262 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k 262 (421)
.+||.|++... . ..+-|+-+. .++++-+.+|.|....|=|++ .+..--..+|++...-.
T Consensus 323 a~nit~~Ntag--------------~---~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~---~~~rqyy~~C~I~GtVD 382 (537)
T PLN02506 323 ARDITFRNTAG--------------P---QNHQAVALRVDSDQSAFYRCSMEGYQDTLYA---HSLRQFYRECEIYGTID 382 (537)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEcceeeccccccee---cCCceEEEeeEEecccc
Confidence 99999998631 0 112344444 579999999999999998875 23445667777764321
Q ss_pred eeeecCCCcccCCCCceEEEEceEe
Q 014647 263 VMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 263 ~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
.++|.. .+-|.+|.+
T Consensus 383 -FIFG~a---------~avfq~C~i 397 (537)
T PLN02506 383 -FIFGNG---------AAVLQNCKI 397 (537)
T ss_pred -eEccCc---------eeEEeccEE
Confidence 234432 455556666
No 43
>PLN02773 pectinesterase
Probab=95.94 E-value=1.7 Score=44.42 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=60.6
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Ee-----------------c-----ceE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-IT-----------------G-----NGC 173 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~-----------------g-----gg~ 173 (421)
|+.+||.. +..+++||=..|+ ..+.|.| .+|+||.|++..-+ |. | -+.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 57777743 2335666656665 3456666 35899999876522 22 1 123
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCee
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLI 241 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGli 241 (421)
+.+ .+++++.+||+|++..+.+ .+-|+-+. .++.+-+.+|.|....|=|+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~-----------------~gQAvAl~v~gDr~~f~~c~~~G~QDTL~ 147 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEG-----------------SGQAVAIRVTADRCAFYNCRFLGWQDTLY 147 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCC-----------------CCcEEEEEecCccEEEEccEeecccceeE
Confidence 445 5799999999999864211 12334433 46788888888877666444
No 44
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=95.89 E-value=0.14 Score=56.21 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=74.2
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eecc------------eEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~gg------------g~i~i~~a~NVI 183 (421)
|+.+||.. +..++||+-..|+-+-+ .|.| .+|+||.|.|..-+ |++. +.+.+ .+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCEE
Confidence 56677743 23466666666764431 3666 47999999987633 3331 13344 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
.+||+|++.... ..+-|+-++ .+++.-+.+|.|....|=|++- +..--..+|++..+
T Consensus 364 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~---~~Rqyy~~C~I~Gt 421 (587)
T PLN02484 364 ARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVH---SNRQFFRECDIYGT 421 (587)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccC---CCcEEEEecEEEec
Confidence 999999986321 122355554 5789999999999998888752 33455666666543
No 45
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.15 Score=52.24 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=68.8
Q ss_pred ceEEecCCcEEEeecceEEEecc---eEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCc
Q 014647 149 HELIINSYKTIDGRGANVEITGN---GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQ 224 (421)
Q Consensus 149 ~~L~I~snkTI~G~ga~i~I~gg---g~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~ 224 (421)
+.++|+.-+|+-|.-. ..+.|+ ..+++ .+.++||++|++|+.-.. -...+-+|-+- .++
T Consensus 45 g~~vInr~l~l~ge~g-a~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~~---------------lp~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGENG-AVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGRS---------------LPAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeeccccc-cEEecCCcccEEEE-eCCCceeeeEEEecCCCC---------------cccccceEEeccCcc
Confidence 4556666666667622 233332 24676 689999999999964210 01122333332 345
Q ss_pred cEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc-----------------CCeeeeecCCCcccCCCCceEEEEceEe
Q 014647 225 KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH-----------------HNEVMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 225 nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~-----------------h~k~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
.--|.||.+-.+.-|++ .+++..+-|--|.+.. ...+...|..-+|..|--.-=|=+||.|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 55555555555555554 3444444444444431 1223334433344444222224578888
Q ss_pred cCCCcCcCcccCCCe
Q 014647 288 GVALVQRMPRCRRGY 302 (421)
Q Consensus 288 ~~n~~~R~Pr~R~G~ 302 (421)
..| |+-.+|||.
T Consensus 186 ~gn---r~~~~Rygv 197 (408)
T COG3420 186 KGN---RFRDLRYGV 197 (408)
T ss_pred ccc---chhheeeeE
Confidence 544 777888874
No 46
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=95.83 E-value=0.15 Score=55.25 Aligned_cols=131 Identities=11% Similarity=0.185 Sum_probs=82.1
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. +..+++|+-..|+- ++.|.| .+|+||.|.|..-+ |.+ -+.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 67777743 23356666666654 455666 36899999986633 321 123444 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCe
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNE 262 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k 262 (421)
.+||+|++.... ..+-|+-++ .++..-+.+|.|....|=|++- +..--..+|++...=.
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~GtVD 356 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH---TMRQFYRECRITGTVD 356 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC---CCCEEEEeeEEeeccc
Confidence 999999986420 122355554 5789999999999999988752 3344556777664311
Q ss_pred eeeecCCCcccCCCCceEEEEceEe
Q 014647 263 VMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 263 ~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
.++|. .++-|.+|.+
T Consensus 357 -FIFG~---------a~avf~~C~i 371 (520)
T PLN02201 357 -FIFGD---------ATAVFQNCQI 371 (520)
T ss_pred -EEecC---------ceEEEEccEE
Confidence 23443 2455666666
No 47
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=95.82 E-value=0.15 Score=54.92 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=74.7
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ecc------------eEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~gg------------g~i~i~~a~NVI 183 (421)
|+.+||.+ +..+++|+=..|+- ++.|.| .+|+||.|.|..-+| .+. +.+.+ .+++++
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 57778743 23466666666753 455666 479999999876433 321 13334 578999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
.+||+|++... ...+-|+-++ .++..-+.+|+|....|=|++ .+..--..+|++..
T Consensus 288 A~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~---~~~RqyyrdC~I~G 344 (509)
T PLN02488 288 GIDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYP---HRDRQFYRECFITG 344 (509)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceee---CCCCEEEEeeEEee
Confidence 99999998631 1123466665 579999999999998888774 23445566666653
No 48
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.76 E-value=0.15 Score=55.18 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=74.9
Q ss_pred hHHHHHhc-----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ec------------ceEEEEeeeccE
Q 014647 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------------NGCLTLQYVSHV 182 (421)
Q Consensus 124 sLR~av~~-----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~g------------gg~i~i~~a~NV 182 (421)
|+.+||.. ...+++|+=..|+- ++.|.| .+|+||.|.|..-+| .+ -+.+.+ .++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 67778852 22467777777774 455666 479999999876333 32 123444 57999
Q ss_pred EEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 183 IIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
+.+||+|++.... ..+-|+-+. .++.+.+.+|.|....|=|++- +..--..+|++..
T Consensus 316 ~a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~G 373 (529)
T PLN02170 316 IARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDITG 373 (529)
T ss_pred EEEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEcc
Confidence 9999999986310 112344444 4788999999999999988752 3345556777664
No 49
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=95.71 E-value=0.16 Score=55.17 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=75.9
Q ss_pred hHHHHHhc------CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eecc------------eEEEEeeecc
Q 014647 124 TLRHAVIQ------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITGN------------GCLTLQYVSH 181 (421)
Q Consensus 124 sLR~av~~------~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~gg------------g~i~i~~a~N 181 (421)
|..+||.. +..+++|+=..|+-+ +.|.| .+|+|+.|.|..-+ |.+. +.+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 67778753 123666666666643 45556 47999999987633 4321 13344 5899
Q ss_pred EEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 182 VIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 182 VIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
++.+||+|++... ...+-|+-+. .++...+.+|.|....|=|++ .+..--..+|+++..
T Consensus 314 F~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~---~~~Rqyy~~C~I~Gt 373 (539)
T PLN02995 314 FIAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV---HSQRQFYRECYIYGT 373 (539)
T ss_pred eEEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhcc---CCCceEEEeeEEeec
Confidence 9999999998631 1123455555 579999999999999998875 234456677777643
No 50
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.68 E-value=0.19 Score=54.69 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=74.2
Q ss_pred hHHHHHhc---CC----CeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeec
Q 014647 124 TLRHAVIQ---TE----PIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVS 180 (421)
Q Consensus 124 sLR~av~~---~~----P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~ 180 (421)
|+.+||.. .. -++||+-..|+-+ +.|.| .+|+||.|.|..-+ |.+ -+.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778743 11 2677777777744 55666 47999999986633 332 134445 579
Q ss_pred cEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 181 NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
+++.+||+|++... . ...-|+-++ .++..-+.+|+|....|=|++ .+..--..+|++..
T Consensus 314 ~F~a~~it~~Ntag--------------~---~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~---~~~rq~y~~c~I~G 373 (538)
T PLN03043 314 RFVAVDVTFRNTAG--------------P---EKHQAVALRNNADLSTFYRCSFEGYQDTLYV---HSLRQFYRECDIYG 373 (538)
T ss_pred CEEEEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEeeEEeccCccccc---CCCcEEEEeeEEee
Confidence 99999999998631 0 123455555 578899999999998887764 23344555666553
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.67 E-value=0.18 Score=54.61 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~NVI 183 (421)
|..+||.. +..+++|+-..|+-+ +.|.| .+|+||.|.|..-+ |.+ -+.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 56667643 233566665566544 45566 46899999986633 321 223444 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
.+||+|++... ...+-|+-++ .++.+-+.+|.|....|=|++- +..--..+|++..+
T Consensus 309 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~---~~Rqyy~~C~IeGt 366 (530)
T PLN02933 309 AKDISFVNYAG-----------------PAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVH---SAKQFYRECDIYGT 366 (530)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEEeEEEecccccccC---CCceEEEeeEEecc
Confidence 99999998631 0122455555 5799999999999999988752 33456667777643
No 52
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.61 E-value=0.17 Score=56.20 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=76.6
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEEe-c------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I~-g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. +..++||+-..|+ .++.|.| ..|+||.|.|..-+|. + -+.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 56777743 2346666656665 3455666 3588999998764432 1 123445 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCC-----------------Ceeeeee
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTD-----------------GLIDAIM 245 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~D-----------------GliDv~~ 245 (421)
.+||+|++... ...+-|+-++ .++..-+.+|.|....| |.+|.+.
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998641 1123455555 57889999999987655 5566666
Q ss_pred CCceEEEEceEecc
Q 014647 246 GSTGITISNNYFSH 259 (421)
Q Consensus 246 gs~~ITISnn~f~~ 259 (421)
|.-..-+++|.|.-
T Consensus 404 G~a~avfq~C~I~~ 417 (670)
T PLN02217 404 GDAAAVFQNCTLLV 417 (670)
T ss_pred cCceEEEEccEEEE
Confidence 77778888888863
No 53
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=95.57 E-value=0.22 Score=54.85 Aligned_cols=131 Identities=11% Similarity=0.165 Sum_probs=83.7
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. ...+++|+-..|+-+ +.|.| .+|+||.|.|..-+ |.+ -+.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67778754 234666666667544 55666 36999999987633 332 123444 679999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCe
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNE 262 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k 262 (421)
.+||+|++... ...+-|+-+. .++..-+.+|.|....|=|++- +..--..+|++...-.
T Consensus 376 a~nitf~Ntag-----------------~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 376 AKSMGFRNTAG-----------------PEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITGTID 435 (596)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEeecc
Confidence 99999998631 0122344444 5799999999999999988752 3455666777764322
Q ss_pred eeeecCCCcccCCCCceEEEEceEe
Q 014647 263 VMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 263 ~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
.++|. ..+-|.+|.+
T Consensus 436 -FIFG~---------a~avf~~C~i 450 (596)
T PLN02745 436 -FIFGD---------AAAIFQNCLI 450 (596)
T ss_pred -EEecc---------eeEEEEecEE
Confidence 34443 2455566665
No 54
>PLN02916 pectinesterase family protein
Probab=95.52 E-value=0.22 Score=53.69 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=74.8
Q ss_pred hHHHHHhc-------CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEEe-c------------ceEEEEeeec
Q 014647 124 TLRHAVIQ-------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G------------NGCLTLQYVS 180 (421)
Q Consensus 124 sLR~av~~-------~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I~-g------------gg~i~i~~a~ 180 (421)
|+.+||.. +..+++|+=..|+-+ +.+.| .+|+||.|.|..-+|. + -+.+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 67777743 234677776677644 55666 3689999998763332 1 123444 578
Q ss_pred cEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 181 NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
+++.+||+|++.... ..+-|+-+. .++..-+.+|.|....|=|++- +..--..+|++..
T Consensus 278 ~F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 278 GFWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred CEEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 999999999986421 112344444 5789999999999999988752 3445666777764
Q ss_pred C
Q 014647 260 H 260 (421)
Q Consensus 260 h 260 (421)
.
T Consensus 338 t 338 (502)
T PLN02916 338 T 338 (502)
T ss_pred c
Confidence 3
No 55
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=95.50 E-value=0.24 Score=54.28 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=73.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------c-------eEEEEeeeccE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------N-------GCLTLQYVSHV 182 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------g-------g~i~i~~a~NV 182 (421)
|+.+||.. +..+++|+-..|+- ++.+.| .+|+||.|.|..-+ |.+ + +.+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 67777743 23356666666653 355666 37999999986633 331 1 13344 57999
Q ss_pred EEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 183 IIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
+.+||+|++... ...+-|+-++ .++..-+.+|.|....|=|++ .+..--..+|++..
T Consensus 350 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~---~~~Rqyy~~C~I~G 407 (572)
T PLN02990 350 TAKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYV---HSHRQFFRDCTVSG 407 (572)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhcc---CCCcEEEEeeEEec
Confidence 999999998631 1123455555 578999999999998887774 23344556666653
No 56
>PLN02634 probable pectinesterase
Probab=95.50 E-value=0.32 Score=50.34 Aligned_cols=119 Identities=15% Similarity=0.238 Sum_probs=76.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEEe-c------------------ceEEEEe
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEIT-G------------------NGCLTLQ 177 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I~-g------------------gg~i~i~ 177 (421)
|+.+||.. +..+++|+-..|+ .++.|.| .+|+||.|.|...+|. . .+.+++
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 45666633 2335556655666 3455666 4799999998764443 1 123444
Q ss_pred eeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceE
Q 014647 178 YVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNY 256 (421)
Q Consensus 178 ~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~ 256 (421)
.+++++.+||+|++..+... .+ ...+-|+-+. .++++-+.+|.|....|=|++ ....--..+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~---~~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCD---DAGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------CC---CCCCceEEEEecCCcEEEEEeEEecccceeee---CCCCEEEEeeE
Confidence 57999999999998753110 01 1223445444 478899999999999998885 23466677787
Q ss_pred eccC
Q 014647 257 FSHH 260 (421)
Q Consensus 257 f~~h 260 (421)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 7754
No 57
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.40 E-value=0.22 Score=54.31 Aligned_cols=113 Identities=14% Similarity=0.265 Sum_probs=74.9
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ecc------------eEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TGN------------GCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~gg------------g~i~i~~a~NVI 183 (421)
|+.+||.. +..|+|||-..|+- ++.|.| .+|+||.|.|...+| ++. +.+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 67778753 33467777777773 456666 469999999876443 221 12334 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
.+||.|++... . ...-|+-++ .++.+-+.+|.|....|=|++ .+..--..+|++..
T Consensus 327 a~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~---~~~Rqyy~~C~I~G 383 (548)
T PLN02301 327 AQDIWFQNTAG--------------P---EKHQAVALRVSADQAVINRCRIDAYQDTLYA---HSLRQFYRDSYITG 383 (548)
T ss_pred EEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEeeeeeecccccee---cCCcEEEEeeEEEe
Confidence 99999998631 1 112344444 578999999999999888875 23445666777664
No 58
>PLN02314 pectinesterase
Probab=95.39 E-value=0.22 Score=54.71 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~g------------gg~i~i~~a~NVI 183 (421)
|+.+||.. +..++||+-..|+-+ +.+.| ..|+|+.|.|..-+| .+ -+.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 67777743 334677776667633 45556 368999999866333 32 123344 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
.+||+|++... ....-|+-++ +++..-+.+|.|....|=|++ .+..--..+|++..
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~---~~~rq~y~~C~I~G 425 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA---HSNRQFYRDCDITG 425 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchhee---CCCCEEEEeeEEEe
Confidence 99999998631 1122455555 678999999999998888774 23345566666654
No 59
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.28 E-value=0.27 Score=53.65 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=72.5
Q ss_pred hHHHHHhc-----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec-------c------eEEEEeeecc
Q 014647 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG-------N------GCLTLQYVSH 181 (421)
Q Consensus 124 sLR~av~~-----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g-------g------g~i~i~~a~N 181 (421)
|..+||.. ...+.||+-..|+-+ +.|.| ..|+||.|.|..-+ |.+ + +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 56777743 134667766667644 45555 46999999986633 322 1 23445 5799
Q ss_pred EEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 182 VIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 182 VIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
++.+||+|++... ...+-|+-++ .++.+.+.+|.|....|=|+. .+..--..+|++..
T Consensus 332 f~a~~it~~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~---~~~rq~y~~C~I~G 390 (553)
T PLN02708 332 FMARDLTIQNTAG-----------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA---HSLRQFYKSCRIQG 390 (553)
T ss_pred eEEEeeEEEcCCC-----------------CCCCceEEEEecCCcEEEEeeeeeecccccee---CCCceEEEeeEEee
Confidence 9999999998631 1123455555 579999999999998887764 12334455666553
No 60
>PLN02497 probable pectinesterase
Probab=95.20 E-value=0.44 Score=48.86 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=76.8
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceE-EEe--------cceEEEEeeeccEEEEee
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANV-EIT--------GNGCLTLQYVSHVIIHNV 187 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i-~I~--------ggg~i~i~~a~NVIIrnL 187 (421)
|+.+||.. +..+++|+=..|+ .++.|.| .+++||.|+|..- .|. +.+.+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 56667643 3345566655665 3455666 4799999998652 232 2234555 6899999999
Q ss_pred EEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 188 HIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 188 ~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
+|++...... . +. ....+-|+-+. .++++-+.+|.|....|=|++ ....--..+|++..+
T Consensus 123 T~~Nt~~~~~--------~-~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~---~~gRqyf~~C~IeG~ 183 (331)
T PLN02497 123 TFANSYNFPS--------K-GN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWD---SDGRHYFKRCTIQGA 183 (331)
T ss_pred EEEeCCCCcc--------c-cC-CCCCcceEEEEecCCcEEEEeeEEeccccceee---CCCcEEEEeCEEEec
Confidence 9998752100 0 00 01122355554 578999999999999999885 234566777777643
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=95.15 E-value=0.28 Score=53.72 Aligned_cols=114 Identities=10% Similarity=0.153 Sum_probs=73.0
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ec------------ceEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------------NGCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~g------------gg~i~i~~a~NVI 183 (421)
|..+||.. +..++||+-..|+- ++.+.| ..|+||.|.|..-+| .+ -+.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 56677743 23356666566654 355666 368999999876333 21 123344 578999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
.+||.|++... ....-|+-+. .++.+-+.+|+|....|=|+. .+..--..+|++...
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~---~~~rq~y~~C~I~Gt 406 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYA---HAQRQFYRECNIYGT 406 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhcc---CCCceEEEeeEEecc
Confidence 99999998631 1122455554 578999999999999888774 233445667776643
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=95.13 E-value=0.32 Score=53.28 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=73.9
Q ss_pred hHHHHHhc-------CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEE-Eec------------ceEEEEeeec
Q 014647 124 TLRHAVIQ-------TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVE-ITG------------NGCLTLQYVS 180 (421)
Q Consensus 124 sLR~av~~-------~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~-I~g------------gg~i~i~~a~ 180 (421)
|..+||.. ...+++|+-..|+-+ +.|.| .+|+||.|.|..-+ |.+ -+.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 56677743 123566766667643 55666 46899999986633 332 124455 579
Q ss_pred cEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 181 HVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 181 NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
+++.+||+|++... ...+-|+-++ .++..-+.+|.|....|=|++ .+..--..+|++..
T Consensus 341 ~F~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~---~~~Rqyy~~C~I~G 400 (566)
T PLN02713 341 NFVAVNITFRNTAG-----------------PAKHQAVALRSGADLSTFYSCSFEAYQDTLYT---HSLRQFYRECDIYG 400 (566)
T ss_pred CeEEEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEeeeeccCCcceEE---CCCCEEEEeeEEec
Confidence 99999999998631 0122455554 578999999999999888875 23445666776653
No 63
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=94.88 E-value=0.38 Score=52.93 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=70.2
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecceEEE-ec------c------eEEEEeeeccEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGANVEI-TG------N------GCLTLQYVSHVI 183 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~i~I-~g------g------g~i~i~~a~NVI 183 (421)
|+.+||.. +..++||+=..|+- ++.+.| .+|+||.|.|..-+| ++ + +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 56677743 23466666666753 355666 368999999876333 22 1 23344 579999
Q ss_pred EEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEec
Q 014647 184 IHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFS 258 (421)
Q Consensus 184 IrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~ 258 (421)
.+||+|++... . ...-|+-+. +++..-+.+|+|....|=|+. .+..--..+|++.
T Consensus 366 a~~itf~Ntag--------------~---~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~---~~~rq~y~~c~I~ 421 (587)
T PLN02313 366 ARDITFQNTAG--------------P---SKHQAVALRVGSDFSAFYQCDMFAYQDTLYV---HSNRQFFVKCHIT 421 (587)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeEecccchhcc---CCCcEEEEeeEEe
Confidence 99999998631 1 112345544 578999999999988876663 1223344455554
No 64
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.50 E-value=0.58 Score=47.25 Aligned_cols=123 Identities=15% Similarity=0.243 Sum_probs=71.7
Q ss_pred hhHHHHHhc----CCCeEEEEecceEEeecceEEec---CCcEEEeecce-EEEecc------------eEEEEeeeccE
Q 014647 123 GTLRHAVIQ----TEPIWITFASNMLIKLKHELIIN---SYKTIDGRGAN-VEITGN------------GCLTLQYVSHV 182 (421)
Q Consensus 123 GsLR~av~~----~~P~~IvF~~~g~I~l~~~L~I~---snkTI~G~ga~-i~I~gg------------g~i~i~~a~NV 182 (421)
-|+.+||.. +..+++||-..|+-+ +.|.|. +++||.|.|.. ..|.+. +.+.+ .++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccce
Confidence 357778753 334677777777644 566673 69999999876 334331 23445 57999
Q ss_pred EEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccCCe
Q 014647 183 IIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNE 262 (421)
Q Consensus 183 IIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h~k 262 (421)
+++||+|++... .. ....-|+.+ .++++.+.+|.|....|-|+. .....-+.+|++..+-.
T Consensus 90 ~~~nit~~Nt~g--------------~~-~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~vD 150 (298)
T PF01095_consen 90 TAENITFENTAG--------------PS-GGQAVALRV-SGDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGNVD 150 (298)
T ss_dssp EEEEEEEEEHCS--------------GS-G----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE
T ss_pred eeeeeEEecCCC--------------Cc-ccceeeeee-cCCcEEEEEeEEccccceeee---ccceeEEEeeEEEecCc
Confidence 999999998631 10 112346665 468999999999999998874 23467778888875422
Q ss_pred eeeecC
Q 014647 263 VMLLGH 268 (421)
Q Consensus 263 ~~L~G~ 268 (421)
+++|.
T Consensus 151 -FIfG~ 155 (298)
T PF01095_consen 151 -FIFGN 155 (298)
T ss_dssp -EEEES
T ss_pred -EEECC
Confidence 35564
No 65
>PLN02671 pectinesterase
Probab=94.45 E-value=0.8 Score=47.51 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=74.3
Q ss_pred hHHHHHhc----CCCeEEEEecceEEeecceEEe---cCCcEEEeecc---eEEEec------------------ceEEE
Q 014647 124 TLRHAVIQ----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGA---NVEITG------------------NGCLT 175 (421)
Q Consensus 124 sLR~av~~----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga---~i~I~g------------------gg~i~ 175 (421)
|+.+||.. +..+++|+=..|+ .++.|.| .+++||.|.|. +..|.. .+.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56667643 2335556555665 4456666 47999999874 334441 12344
Q ss_pred EeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceEEEEc
Q 014647 176 LQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGITISN 254 (421)
Q Consensus 176 i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISn 254 (421)
+ .+++++.+||+|++..+... + ...+-|+-+. .++++-+.+|.|....|=|++- ...--+.+
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~ 213 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQ 213 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEe
Confidence 4 57999999999998642110 0 1122344443 4699999999999999999852 34566778
Q ss_pred eEeccC
Q 014647 255 NYFSHH 260 (421)
Q Consensus 255 n~f~~h 260 (421)
|++..+
T Consensus 214 CyIeG~ 219 (359)
T PLN02671 214 CYIQGS 219 (359)
T ss_pred cEEEEe
Confidence 887744
No 66
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=94.36 E-value=1.1 Score=45.60 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=75.5
Q ss_pred CcEEEeec--ceEEEecceEEEE-eeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCcee-ee-CCccEEEEe
Q 014647 156 YKTIDGRG--ANVEITGNGCLTL-QYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGIS-IF-GSQKIWVDH 230 (421)
Q Consensus 156 nkTI~G~g--a~i~I~ggg~i~i-~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~-i~-gs~nVWIDH 230 (421)
|+||.+.. .+ .-. .|.| .+.+||-|+|.+|.+.-. + +..+.+||.. |. ++..|=|-.
T Consensus 131 Nltf~~~~~~d~---~~D-~Isi~~~~~nIWIDH~tf~~~s~-------------~-~~~~h~DGl~Dik~~AnyITiS~ 192 (345)
T COG3866 131 NLTFEGFYQGDP---NYD-AISIYDDGHNIWIDHNTFSGGSY-------------N-ASGSHGDGLVDIKKDANYITISY 192 (345)
T ss_pred eeEEEeeccCCC---CCC-cEEeccCCeEEEEEeeEeccccc-------------c-ccccCCCccEEeccCCcEEEEEe
Confidence 67777653 22 002 2555 567888899988886421 1 1234667754 44 688888888
Q ss_pred EEEecCCCCeeeee-------eCCceEEEEceEeccCCee---eeecCCCcccCCCCceEEEEceEecCCCcCcCcccC-
Q 014647 231 CSLSYCTDGLIDAI-------MGSTGITISNNYFSHHNEV---MLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR- 299 (421)
Q Consensus 231 cs~s~~~DGliDv~-------~gs~~ITISnn~f~~h~k~---~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R- 299 (421)
|.|-++.-.++--. .+.-.||+.+|+|.+-..- +-+| .|-+-+|+| ++ .|...
T Consensus 193 n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-----------~vHvyNNYy-~~----~~~~g~ 256 (345)
T COG3866 193 NKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-----------MVHVYNNYY-EG----NPKFGV 256 (345)
T ss_pred eeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee-----------EEEEecccc-cc----Ccccce
Confidence 88887655544111 1223699999999864321 1121 456677888 42 45332
Q ss_pred ---CC---eEEEEcceEeCC
Q 014647 300 ---RG---YIHVVNNDFTSW 313 (421)
Q Consensus 300 ---~G---~~Hv~NN~y~~~ 313 (421)
-| .+++=||||.+-
T Consensus 257 a~~iG~~AkiyvE~NyF~~~ 276 (345)
T COG3866 257 AITIGTSAKIYVENNYFENG 276 (345)
T ss_pred EEeeccceEEEEecceeccC
Confidence 23 689999999874
No 67
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.34 E-value=0.65 Score=44.02 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=67.9
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCc-eeee-CCccEEEEeEEEecCCCCeeee------e
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDG-ISIF-GSQKIWVDHCSLSYCTDGLIDA------I 244 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDa-I~i~-gs~nVWIDHcs~s~~~DGliDv------~ 244 (421)
+|.+.+++||.|.++.|....... . ....|+ |.+. ++++|=|-+|-|..+....+.- .
T Consensus 77 ai~i~~~~nVWIDH~sfs~~~~~~-------------~-~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~ 142 (200)
T PF00544_consen 77 AISIDNSSNVWIDHCSFSWGNFEC-------------N-SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNST 142 (200)
T ss_dssp SEEEESTEEEEEES-EEEETTS-G-------------G-GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGG
T ss_pred eEEEEecccEEEeccEEecccccc-------------c-cccCCceEEEEeCCceEEEEchhccccccccccCCCCCccc
Confidence 589999999999999999862100 0 111343 5665 6889999999998754443310 1
Q ss_pred eCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccCC-CeEEEEcceE
Q 014647 245 MGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRR-GYIHVVNNDF 310 (421)
Q Consensus 245 ~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R~-G~~Hv~NN~y 310 (421)
.....+|+-+|+|.+...-+ ...+.-++-+.+|+|. +..+..=.+|. +++-+-||||
T Consensus 143 ~~~~~vT~hhN~f~~~~~R~--------P~~r~G~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 143 DRGLRVTFHHNYFANTNSRN--------PRVRFGYVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GTTEEEEEES-EEEEEEE-T--------TEECSCEEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred cCCceEEEEeEEECchhhCC--------CcccccEEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 12259999999997643221 0112236888899884 44554444443 3677888876
No 68
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.49 E-value=3.5 Score=43.71 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=82.7
Q ss_pred hHHHHHhc-----CCCeEEEEecceEEeecceEEe---cCCcEEEeecce---EEEecc---------------------
Q 014647 124 TLRHAVIQ-----TEPIWITFASNMLIKLKHELII---NSYKTIDGRGAN---VEITGN--------------------- 171 (421)
Q Consensus 124 sLR~av~~-----~~P~~IvF~~~g~I~l~~~L~I---~snkTI~G~ga~---i~I~gg--------------------- 171 (421)
|+.+||.. ...+++|+=..|+- ++.|.| .+++||.|.|.+ ..|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 56777753 23366666666654 355666 479999997632 444321
Q ss_pred -------------------------eEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCcc
Q 014647 172 -------------------------GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQK 225 (421)
Q Consensus 172 -------------------------g~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~n 225 (421)
+.+.+ .+++++.+||+|++...... ....+-|+-+. .++.
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDr 239 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCc
Confidence 12333 57999999999998752110 01122345444 5789
Q ss_pred EEEEeEEEecCCCCeeeeeeC---------CceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEe
Q 014647 226 IWVDHCSLSYCTDGLIDAIMG---------STGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHF 287 (421)
Q Consensus 226 VWIDHcs~s~~~DGliDv~~g---------s~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f 287 (421)
+.+.+|.|....|=|+.-..+ ...--+.+|++...-. .++|. .++-|.+|.+
T Consensus 240 a~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VD-FIFG~---------g~AvFenC~I 300 (422)
T PRK10531 240 VQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVD-FVFGR---------GAVVFDNTEF 300 (422)
T ss_pred EEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeeccc-EEccC---------ceEEEEcCEE
Confidence 999999999999988852111 1246666777764311 23443 2455666666
No 69
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.86 E-value=0.27 Score=34.97 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=35.5
Q ss_pred ceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc
Q 014647 217 GISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH 259 (421)
Q Consensus 217 aI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~ 259 (421)
||.++.+++..|..|.++...||+. ...+.+.+|..|.+.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEc
Confidence 6888999999999999999999886 5678888999988864
No 70
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.11 E-value=1.5 Score=46.38 Aligned_cols=80 Identities=26% Similarity=0.248 Sum_probs=35.6
Q ss_pred ccEEEEeEEEecCC--CCeeeeeeCCceEEEEceEeccCCeeeeecCCCcccCCCCceEEEEceEecCCCcC-cCcccC-
Q 014647 224 QKIWVDHCSLSYCT--DGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQ-RMPRCR- 299 (421)
Q Consensus 224 ~nVWIDHcs~s~~~--DGliDv~~gs~~ITISnn~f~~h~k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~-R~Pr~R- 299 (421)
.+.-|.||-|..|. -|+|++ .|..-||.+|.|.+....+-+=|. -.-|+..|+|-.+-.. .-+-+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHG--------n~n~V~gN~FiGng~~~~tGGIRI 268 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHG--------NRNTVEGNVFIGNGVKEGTGGIRI 268 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE---------SS-EEES-EEEE-SSSS-B--EEE
T ss_pred cceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecC--------CCceEeccEEecCCCcCCCCceEE
Confidence 56667777777654 345554 366677778887776554444332 2456777777532111 123344
Q ss_pred CCeEE-EEcceEeCC
Q 014647 300 RGYIH-VVNNDFTSW 313 (421)
Q Consensus 300 ~G~~H-v~NN~y~~~ 313 (421)
+|.-| |+|||+++-
T Consensus 269 i~~~H~I~nNY~~gl 283 (425)
T PF14592_consen 269 IGEGHTIYNNYFEGL 283 (425)
T ss_dssp -SBS-EEES-EEEES
T ss_pred ecCCcEEEcceeecc
Confidence 34433 777777754
No 71
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=88.92 E-value=2.7 Score=40.70 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=35.7
Q ss_pred cCcCCCCCceeeeCCc-cEEEEeEEEecCCCCeeeeeeCCceEEEEceEeccC
Q 014647 209 YRGKSDGDGISIFGSQ-KIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 209 ~r~~sdgDaI~i~gs~-nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~h 260 (421)
|-+.--.||+++.+.. .+.|....+....|-.|- ..+.-.++|++-...++
T Consensus 90 wwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~ 141 (215)
T PF03211_consen 90 WWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDF 141 (215)
T ss_dssp EESS-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEE
T ss_pred EecccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCC
Confidence 3344556888888777 888888888888888875 35666788888544444
No 72
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=88.57 E-value=2.3 Score=40.33 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=59.7
Q ss_pred ceEEEEceEeccCC--eeeeecCCCcccCCCCceEEEEceEecCCCcCcCcccC--CC-------eEEEEcceEeCCc--
Q 014647 248 TGITISNNYFSHHN--EVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCR--RG-------YIHVVNNDFTSWE-- 314 (421)
Q Consensus 248 ~~ITISnn~f~~h~--k~~L~G~sd~~~~d~g~~VTihhN~f~~n~~~R~Pr~R--~G-------~~Hv~NN~y~~~~-- 314 (421)
++|.|=||.+.+-. ..-|+|...++..+....|.+|||.|.. ....|... .| ..-+.||+|..-.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~--tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYD--TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeec--CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 57888899998753 4568888777777776789999999963 45677655 23 2468899997642
Q ss_pred ----ceeec----CCCCceEEeeCcEEeCCC
Q 014647 315 ----MYAIG----GSANPTINSQGNRYTAPP 337 (421)
Q Consensus 315 ----~yaig----g~~~~~i~~egN~F~~~~ 337 (421)
+|..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 123445677788877643
No 73
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=82.07 E-value=8.4 Score=42.17 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=73.6
Q ss_pred EEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecC----CCCeeeeeeCCc
Q 014647 173 CLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC----TDGLIDAIMGST 248 (421)
Q Consensus 173 ~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~----~DGliDv~~gs~ 248 (421)
.+.+..+.||-++++.|...- -=++++..|+|+-|+..++..- .||+ | ...+.
T Consensus 240 ~~~l~~c~NV~~~g~~i~ns~---------------------~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~-d-~~sc~ 296 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKNSP---------------------LWTVHPVDCDNLTFRNLTIDANRFDNTDGF-D-PGSCS 296 (542)
T ss_pred eEEEeccceEEEeeeEecCCC---------------------cEEEeeecccCceecceEEECCCCCCCCcc-c-cccce
Confidence 456778999999999998641 0145566677777666666654 4576 5 46789
Q ss_pred eEEEEceEeccCCeeeeecCCCccc----CCCCceEEEEceEecCCCcCcCccc-C-CC---eEEEEcceEeC
Q 014647 249 GITISNNYFSHHNEVMLLGHNDKYA----LDMGMQVTIAFNHFGVALVQRMPRC-R-RG---YIHVVNNDFTS 312 (421)
Q Consensus 249 ~ITISnn~f~~h~k~~L~G~sd~~~----~d~g~~VTihhN~f~~n~~~R~Pr~-R-~G---~~Hv~NN~y~~ 312 (421)
|+-|.+|.|..-+.+.-+=++.... .....+++|.||+|..+ ....=.- . .| .+-+-||++.+
T Consensus 297 NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 297 NVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDN 368 (542)
T ss_pred eEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeecc
Confidence 9999999999877655543332211 11125799999999643 2211110 0 12 35677777766
No 74
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=77.21 E-value=13 Score=36.85 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred cCCcEEEeecceEE-E-ecceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeC------Ccc
Q 014647 154 NSYKTIDGRGANVE-I-TGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFG------SQK 225 (421)
Q Consensus 154 ~snkTI~G~ga~i~-I-~ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~g------s~n 225 (421)
.++.+|.|.+-.-. + .|. +|.|+.+ +..|+|.+|.++. .+||.+.+ ..+
T Consensus 96 ~~~~~i~GvtItN~n~~~g~-Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGT-GIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred cCCCEEEEEEEEcCCCCcce-EEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 56777777632111 1 333 4889665 9999999999863 23344332 346
Q ss_pred EEEEeEEEecCCCCeeeeeeC--CceEEEEceEeccCCeee
Q 014647 226 IWVDHCSLSYCTDGLIDAIMG--STGITISNNYFSHHNEVM 264 (421)
Q Consensus 226 VWIDHcs~s~~~DGliDv~~g--s~~ITISnn~f~~h~k~~ 264 (421)
+.|..+++.....|+. +... ...-+|.||+|++....+
T Consensus 153 ~vI~GN~~~~~~~Gi~-i~~~~~~~~n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 153 NVISGNSIYFNKTGIS-ISDNAAPVENKIENNIIENNNIGI 192 (246)
T ss_pred eEeecceEEecCcCeE-EEcccCCccceeeccEEEeCCcCe
Confidence 6688888888777773 2211 122478999999754433
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=76.02 E-value=59 Score=31.07 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCccEEEEeEEEecCC--------CCeeeeeeCCceEEEEceEeccCCee--eeecCCCcc-cCCCCceEEEEceEecCC
Q 014647 222 GSQKIWVDHCSLSYCT--------DGLIDAIMGSTGITISNNYFSHHNEV--MLLGHNDKY-ALDMGMQVTIAFNHFGVA 290 (421)
Q Consensus 222 gs~nVWIDHcs~s~~~--------DGliDv~~gs~~ITISnn~f~~h~k~--~L~G~sd~~-~~d~g~~VTihhN~f~~n 290 (421)
.+++|+|.||.|..+. .|++ ..|-.+..|.||.|..-..+ .-+.....+ ....|...++.+|.+ -|
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv--~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~N 108 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIV--TSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VN 108 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEE--eccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-ee
Confidence 4679999999999863 2443 34566889999999864332 211111111 122345566677888 46
Q ss_pred CcCc
Q 014647 291 LVQR 294 (421)
Q Consensus 291 ~~~R 294 (421)
+.+|
T Consensus 109 T~~r 112 (198)
T PF08480_consen 109 TRKR 112 (198)
T ss_pred eeec
Confidence 7765
No 76
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=71.66 E-value=6.6 Score=36.12 Aligned_cols=38 Identities=26% Similarity=0.537 Sum_probs=26.0
Q ss_pred CCccEEEEeEEEec-CCCCeeeeeeCCceEEEEceEeccCC
Q 014647 222 GSQKIWVDHCSLSY-CTDGLIDAIMGSTGITISNNYFSHHN 261 (421)
Q Consensus 222 gs~nVWIDHcs~s~-~~DGliDv~~gs~~ITISnn~f~~h~ 261 (421)
+..++.|.+|.+.. +..|+ .+ ....+++|++|.|.+-.
T Consensus 183 ~~~~~~i~n~~~~~~~~~gi-~i-~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 183 GNNNITISNNTFEGNCGNGI-NI-EGGSNIIISNNTIENCD 221 (225)
T ss_dssp EEEEEEEECEEEESSSSESE-EE-EECSEEEEEEEEEESSS
T ss_pred ecceEEEEeEEECCccceeE-EE-ECCeEEEEEeEEEECCc
Confidence 44788888888887 55565 33 34445888888887643
No 77
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=66.67 E-value=71 Score=32.13 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.2
Q ss_pred ceEEEEceEecCCCcCcCcccCCCeEEEEcceEeC
Q 014647 278 MQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTS 312 (421)
Q Consensus 278 ~~VTihhN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~ 312 (421)
.++|+.+|.. .+ -.|.|---.+.+.|.-+.+
T Consensus 194 kNltliNC~I-~g---~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 194 KNLTLINCTI-EG---TQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CCeEEEEeEE-ec---cCccEeecceEEeCcEeec
Confidence 4789999998 33 4577644456777777654
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=65.28 E-value=13 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=32.8
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecC
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYC 236 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~ 236 (421)
|.+..+++..|++-+|.+. .|||.+..+++.-|..|.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 6677778888888888753 3699999999999999988754
No 79
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=59.45 E-value=16 Score=37.22 Aligned_cols=56 Identities=16% Similarity=0.372 Sum_probs=38.1
Q ss_pred EEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCe
Q 014647 174 LTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGL 240 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGl 240 (421)
+.+++.++.||||+.-+++.|. +.....-|..-+.|+||+|..||...+-++.--+
T Consensus 262 vhvengkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsagml 317 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAGML 317 (464)
T ss_pred EEecCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccccE
Confidence 3456778888888888877541 1111223455677899999999998887765444
No 80
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=53.65 E-value=74 Score=31.99 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=11.7
Q ss_pred eeeccEEEEeeEEEec
Q 014647 177 QYVSHVIIHNVHIHHC 192 (421)
Q Consensus 177 ~~a~NVIIrnL~ir~~ 192 (421)
.+++|..|.|.+|.++
T Consensus 16 f~~~d~~l~~~~f~dG 31 (277)
T PF12541_consen 16 FGSHDLRLENCTFADG 31 (277)
T ss_pred cccCCCEEEeeEEeCC
Confidence 3567888888888764
No 81
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=47.00 E-value=74 Score=34.64 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=44.7
Q ss_pred eEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeee-CCccEEEEeEEEecCCCCeeeeeeCCceE
Q 014647 172 GCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIF-GSQKIWVDHCSLSYCTDGLIDAIMGSTGI 250 (421)
Q Consensus 172 g~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~-gs~nVWIDHcs~s~~~DGliDv~~gs~~I 250 (421)
+.+.+ .+++++.+||+|++... . ...-|+-+. .++++-+.+|.|....|=|++- +..-
T Consensus 263 aT~~v-~~~~F~a~nitf~Ntag--------------~---~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~---~~rq 321 (497)
T PLN02698 263 ATFTI-TGDGFIARDIGFKNAAG--------------P---KGEQAIALSITSDHSVLYRCSIAGYQDTLYAA---ALRQ 321 (497)
T ss_pred eeEEE-ECCCeEEEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEcceeecccchheeC---CCcE
Confidence 34556 57999999999998631 1 011344444 5789999999999988877742 2334
Q ss_pred EEEceEecc
Q 014647 251 TISNNYFSH 259 (421)
Q Consensus 251 TISnn~f~~ 259 (421)
-..+|++..
T Consensus 322 yy~~C~I~G 330 (497)
T PLN02698 322 FYRECDIYG 330 (497)
T ss_pred EEEeeEEEe
Confidence 555666653
No 82
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=43.70 E-value=4.2e+02 Score=28.14 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=43.0
Q ss_pred EEEeeeccEEEEeeEEEeccc-----CCCceeeCCCCccccCcCCCCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCc
Q 014647 174 LTLQYVSHVIIHNVHIHHCKP-----SGNTMIASSPTHVGYRGKSDGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGST 248 (421)
Q Consensus 174 i~i~~a~NVIIrnL~ir~~~~-----~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~ 248 (421)
+.+....+++||+..|.+..- ...+.||+-.- + .-.-||.-.+...+-|.+|.|..|.=|++. ..
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC~F-~-----~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G 208 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGCTF-Y-----GCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EG 208 (386)
T ss_pred eEEEecceEEEEeeEEecCcceeEEEcCCcEEeeeEE-E-----EEEEEeecCCcceEEeeheeeeheEEEEEe----cC
Confidence 345567888888888876531 00011111000 0 001233333456777788888888777742 34
Q ss_pred eEEEEceEeccCC
Q 014647 249 GITISNNYFSHHN 261 (421)
Q Consensus 249 ~ITISnn~f~~h~ 261 (421)
..+|++|-+.+-.
T Consensus 209 ~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 209 PARIRHNCASECG 221 (386)
T ss_pred CeEEecceecccc
Confidence 6777788877643
No 83
>PRK09752 adhesin; Provisional
Probab=27.82 E-value=5.5e+02 Score=31.23 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=44.2
Q ss_pred cceEEEEeeeccEEEEeeEEEecccCCCceeeCCCCccccCcCCCCCceeeeCCc-----cEEEEeEEEecC-----CCC
Q 014647 170 GNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQ-----KIWVDHCSLSYC-----TDG 239 (421)
Q Consensus 170 ggg~i~i~~a~NVIIrnL~ir~~~~~~~~~i~~~~~~~g~r~~sdgDaI~i~gs~-----nVWIDHcs~s~~-----~DG 239 (421)
|++ |.-....++.|.++.|++... ...|-||...+.. .+-|..|.|... .-|
T Consensus 112 GGA-Iya~~~~~itI~ns~F~nN~A-----------------~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GG 173 (1250)
T PRK09752 112 GGA-IFAKENSTLNLTDVIFSGNVA-----------------GGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGG 173 (1250)
T ss_pred ccE-EEecCcceeEEeeeEEEcccc-----------------CCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCC
Confidence 443 544444557888888886421 1245677765432 367888888764 234
Q ss_pred eeeeeeCCceEEEEceEeccC
Q 014647 240 LIDAIMGSTGITISNNYFSHH 260 (421)
Q Consensus 240 liDv~~gs~~ITISnn~f~~h 260 (421)
.|-. -...++|++|.|.+.
T Consensus 174 AIYs--~ng~vtIsnS~F~nN 192 (1250)
T PRK09752 174 AIYT--INNDVYLSDVIFDNN 192 (1250)
T ss_pred EEEE--ccCcEEEEeeEEeCC
Confidence 4432 245799999999964
No 84
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=23.66 E-value=5.1e+02 Score=28.86 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=29.3
Q ss_pred CCCceeeeCCccEEEEeEEEecCCCCeeeeeeCCceEEEEceEecc-CCe-eeeecCCCcccCCCC-ceEEEEceEe
Q 014647 214 DGDGISIFGSQKIWVDHCSLSYCTDGLIDAIMGSTGITISNNYFSH-HNE-VMLLGHNDKYALDMG-MQVTIAFNHF 287 (421)
Q Consensus 214 dgDaI~i~gs~nVWIDHcs~s~~~DGliDv~~gs~~ITISnn~f~~-h~k-~~L~G~sd~~~~d~g-~~VTihhN~f 287 (421)
..|||.++..+.| ++|-+-...|.+ +..-++++|++|.+-. |+. ++-+|........-- .++.+.||.+
T Consensus 372 qtDGi~ly~nS~i--~dcF~h~nDD~i---KlYhS~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 372 QTDGIELYPNSTI--RDCFIHVNDDAI---KLYHSNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp T----B--TT-EE--EEEEEEESS-SE---E--STTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---
T ss_pred ccCCccccCCCee--eeeEEEecCchh---heeecCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeee
Confidence 4589999865555 666666666665 2334889999998874 322 344665432221100 3455655544
Done!