BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014650
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 80 DPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLD 139
+ S+ S +D + LP +++ IS IY LGG D +
Sbjct: 123 EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV-----ISHNGMIYCLGGKTDDKKC---- 173
Query: 140 RPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR 199
++ F +N W+ +APM +PR F A + +I++AGG + L
Sbjct: 174 ----TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG--KIVIAGGVTEDGLS------ 221
Query: 200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYG 244
+SVE +D+ N+W M E P+ R+ + +G + +GG+
Sbjct: 222 -ASVEAFDLKTNKWEVMTEFPQERSSIS--LVSLAGSLYAIGGFA 263
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 116/313 (37%), Gaps = 83/313 (26%)
Query: 116 SISLGPYIYLLGGSHFDARS-----FPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF 170
S+SL IY++GG +D RS LD D W +APM RG
Sbjct: 58 SVSLHDRIYVIGG--YDGRSRLSSVECLDYTADEDGV---------WYSVAPMNVRRG-- 104
Query: 171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV 230
A +L +I GG S R +S+ERYD ++W + +M R G V
Sbjct: 105 -LAGATTLGDMIYVSGGFDGS------RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Query: 231 AEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDM 290
A SG + +GGY ++ V D + G W V M
Sbjct: 158 A--SGVIYCLGGYDGLNILNSVEKYDPH----------------------TGHWTNVTPM 193
Query: 291 WDEWERSRIGKIVVMEDENRGRPEVFMLDKFD-------ILRYDMGLNRWLKETTIPEIR 343
+RS G + ++ D ++++ FD + Y++ + W TT+ +
Sbjct: 194 --ATKRSGAG-VALLND------HIYVVGGFDGTAHLSSVEAYNIRTDSW---TTVTSMT 241
Query: 344 PCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP 403
+ +G VL G LY + G+ L + I+ Y P +W + +
Sbjct: 242 TPRCYVGATVLRGRLYAIAGYDGNSLLSS-------------IECYDPIIDSWEVVTSMG 288
Query: 404 PFPQPLDFGTAIM 416
Q D G ++
Sbjct: 289 --TQRCDAGVCVL 299
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEES--GE 236
N++++ GG FG+ S I VE+YD EW + + R R +VA S
Sbjct: 14 NEVLLVVGG-----FGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR----YVASVSLHDR 64
Query: 237 FWVMGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDMWDEWER 296
+V+GGY +S V +D Y D G W V M R
Sbjct: 65 IYVIGGYDGRSRLSSVECLD-YTAD------------------EDGVWYSVAPM--NVRR 103
Query: 297 SRIGKIVVMEDENRGRPEVFMLDKFD-------ILRYDMGLNRWLKETTIPEIRPCKKPL 349
G + + +++ FD + RYD +++W + + +++ ++
Sbjct: 104 GLAGATTLGD-------MIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGA 153
Query: 350 GFIVLDGELYVMTVLKGSD-LNETRRSQQH 378
G +V G +Y + G + LN + H
Sbjct: 154 GLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 105 NPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164
+P Y + T +S +Y++GG D + + ++ F W+ +APM
Sbjct: 133 DPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL--------NKMCVYDPKKFEWKELAPMQ 184
Query: 165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224
+ R F A +IIVA G + L SS E Y + N+W + P+ R+
Sbjct: 185 TARSLF--GATVHDGRIIVAAGVTDTGL-------TSSAEVYSITDNKWAPFEAFPQERS 235
Query: 225 GCVGFVAEESGEFWVMGGYGDSRTISGVL 253
+ G + +GG+ T SG L
Sbjct: 236 SLS--LVSLVGTLYAIGGFATLETESGEL 262
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 20/141 (14%)
Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162
PC P + + +IY +GGSH ++R P W +AP
Sbjct: 105 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---------EWHLVAP 155
Query: 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222
M++ R A LN+++ A GG + +R++S E Y +NEW + M
Sbjct: 156 MLTRRIGVGVAV---LNRLLYAVGGFDGT------NRLNSAECYYPERNEWRMITAMNTI 206
Query: 223 RAGCVGFVAEESGEFWVMGGY 243
R+G V + GGY
Sbjct: 207 RSGAGVCVLHNC--IYAAGGY 225
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 58/279 (20%)
Query: 119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL 178
+G +Y +GG R+ D S + +N +T W APM PR V +
Sbjct: 70 VGGLLYAVGG-----RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI---GVGVI 121
Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFW 238
+ I A GGS + +SVERY+ ++EW + M R G VG VA + +
Sbjct: 122 DGHIYAVGGSHGCI------HHNSVERYEPERDEWHLVAPMLTRRIG-VG-VAVLNRLLY 173
Query: 239 VMGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDMWDEWERSR 298
+GG+ + ++ + YY + R WR + M RS
Sbjct: 174 AVGGFDGTNRLN---SAECYYPE-------------------RNEWRMITAM--NTIRSG 209
Query: 299 IGKIVVMEDENRGRPEVFMLDKFD-ILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGE 357
G + V+ + D+ + + RYD+ W T + ++ + LG V G
Sbjct: 210 AG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETW---TFVAPMKHRRSALGITVHQGR 265
Query: 358 LYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW 396
+YV+ G ++ ++ Y P TW
Sbjct: 266 IYVLGGYDGHTFLDS-------------VECYDPDTDTW 291
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVE 204
+S R++ T +W +APM R + + +I V GG H+ + SVE
Sbjct: 232 NSVERYDVETETWTFVAPMKHRRSALGITVHQG--RIYVLGGYDGHTF-------LDSVE 282
Query: 205 RYDVAKNEWVSMDEMPRFRAG 225
YD + W + M R+G
Sbjct: 283 CYDPDTDTWSEVTRMTSGRSG 303
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 20/141 (14%)
Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162
PC P + + +IY +GGSH ++R P W +AP
Sbjct: 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---------EWHLVAP 154
Query: 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222
M++ R A LN+++ A GG + +R++S E Y +NEW + M
Sbjct: 155 MLTRRIGVGVAV---LNRLLYAVGGFDGT------NRLNSAECYYPERNEWRMITAMNTI 205
Query: 223 RAGCVGFVAEESGEFWVMGGY 243
R+G V + GGY
Sbjct: 206 RSGAGVCVLHNC--IYAAGGY 224
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 58/279 (20%)
Query: 119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL 178
+G +Y +GG R+ D S + +N +T W APM PR V +
Sbjct: 69 VGGLLYAVGG-----RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI---GVGVI 120
Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFW 238
+ I A GGS + +SVERY+ ++EW + M R G VG VA + +
Sbjct: 121 DGHIYAVGGSHGCI------HHNSVERYEPERDEWHLVAPMLTRRIG-VG-VAVLNRLLY 172
Query: 239 VMGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDMWDEWERSR 298
+GG+ + ++ + YY + R WR + M RS
Sbjct: 173 AVGGFDGTNRLN---SAECYYPE-------------------RNEWRMITAM--NTIRSG 208
Query: 299 IGKIVVMEDENRGRPEVFMLDKFD-ILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGE 357
G + V+ + D+ + + RYD+ W T + ++ + LG V G
Sbjct: 209 AG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETW---TFVAPMKHRRSALGITVHQGR 264
Query: 358 LYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW 396
+YV+ G ++ ++ Y P TW
Sbjct: 265 IYVLGGYDGHTFLDS-------------VECYDPDTDTW 290
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVE 204
+S R++ T +W +APM R + + +I V GG H+ + SVE
Sbjct: 231 NSVERYDVETETWTFVAPMKHRRSALGITVHQG--RIYVLGGYDGHTF-------LDSVE 281
Query: 205 RYDVAKNEWVSMDEMPRFRAG 225
YD + W + M R+G
Sbjct: 282 CYDPDTDTWSEVTRMTSGRSG 302
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 157 WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM 216
W I PM + R A V L+ I A GG +++SVERYDV W +
Sbjct: 190 WRMITPMNTIRSG---AGVCVLHNCIYAAGGYD------GQDQLNSVERYDVETETWTFV 240
Query: 217 DEMPRFRAGCVGFVAEESGEFWVMGGY 243
M R+ +G + G+ +V+GGY
Sbjct: 241 APMRHHRSA-LGITVHQ-GKIYVLGGY 265
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQI 181
+IY +GGSH ++R P W +APM++ R A LN++
Sbjct: 117 HIYAVGGSHGCIHHSSVERYEPERD---------EWHLVAPMLTRRIGVGVAV---LNRL 164
Query: 182 IVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG 241
+ A GG + +R++S E Y +NEW + M R+G V + G
Sbjct: 165 LYAVGGFDGT------NRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC--IYAAG 216
Query: 242 GYGDSRTISGVLPVD 256
GY ++ V D
Sbjct: 217 GYDGQDQLNSVERYD 231
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVE 204
+S R++ T +W +APM R + + +I V GG H+ + SVE
Sbjct: 225 NSVERYDVETETWTFVAPMRHHRSALGITVHQG--KIYVLGGYDGHTF-------LDSVE 275
Query: 205 RYDVAKNEWVSMDEMPRFRAG 225
YD + W + M R+G
Sbjct: 276 CYDPDSDTWSEVTRMTSGRSG 296
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 157 WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM 216
W I PM + R A V L+ I A GG +++SVERYDV W +
Sbjct: 189 WRMITPMNTIRSG---AGVCVLHNCIYAAGGYD------GQDQLNSVERYDVETETWTFV 239
Query: 217 DEMPRFRAGCVGFVAEESGEFWVMGGY 243
M R+ +G + G+ +V+GGY
Sbjct: 240 APMRHHRSA-LGITVHQ-GKIYVLGGY 264
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQI 181
+IY +GGSH ++R P W +APM++ R A LN++
Sbjct: 116 HIYAVGGSHGCIHHSSVERYEPERD---------EWHLVAPMLTRRIGVGVAV---LNRL 163
Query: 182 IVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG 241
+ A GG + +R++S E Y +NEW + M R+G V + G
Sbjct: 164 LYAVGGFDGT------NRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNC--IYAAG 215
Query: 242 GYGDSRTISGVLPVD 256
GY ++ V D
Sbjct: 216 GYDGQDQLNSVERYD 230
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVE 204
+S R++ T +W +APM R + + +I V GG H+ + SVE
Sbjct: 224 NSVERYDVETETWTFVAPMRHHRSALGITVHQG--KIYVLGGYDGHTF-------LDSVE 274
Query: 205 RYDVAKNEWVSMDEMPRFRAG 225
YD + W + M R+G
Sbjct: 275 CYDPDSDTWSEVTRMTSGRSG 295
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
C+ + IY+ GGS + S R L +S ++ T +W + PMI R +
Sbjct: 141 CSHGMVEANGLIYVCGGSLGNNVS---GRVL--NSCEVYDPATETWTELCPMIEARKNHG 195
Query: 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP 220
V+ ++I GG ++ L G + +VE YD+ NEW + MP
Sbjct: 196 LVFVK--DKIFAVGG--QNGLGG-----LDNVEYYDIKLNEWKMVSPMP 235
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162
PC P + + +IY +GGSH ++R P W +AP
Sbjct: 104 PCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---------EWHLVAP 154
Query: 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222
++ R A LN+++ A GG + +R++S E Y +NEW +
Sbjct: 155 XLTRRIGVGVAV---LNRLLYAVGGFDGT------NRLNSAECYYPERNEWRXITAXNTI 205
Query: 223 RAGCVGFVAEESGEFWVMGGY 243
R+G V + GGY
Sbjct: 206 RSGAGVCVLHNC--IYAAGGY 224
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL 178
+G +Y +GG R+ D S + +N T W AP PR V +
Sbjct: 69 VGGLLYAVGG-----RNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIG---VGVI 120
Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW 213
+ I A GGS + +SVERY+ ++EW
Sbjct: 121 DGHIYAVGGSHGCI------HHNSVERYEPERDEW 149
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 125 LLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVA 184
+L G + F L S A+ N + W +APM + R S V L +
Sbjct: 106 VLNGLLYAVGGFDGSTGLSSVEAY--NIKSNEWFHVAPMNTRRSSVGVGVVGGL--LYAV 161
Query: 185 GG---GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG 225
GG SR L S+VE Y+ NEW + EM R+G
Sbjct: 162 GGYDVASRQCL--------STVECYNATTNEWTYIAEMSTRRSG 197
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
C + + ++ +GG + R +D P + W +A M R +
Sbjct: 53 CRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDP---------VKDQWTSVANMRDRRSTLG 103
Query: 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224
A LN ++ A GG G+ G +SSVE Y++ NEW + M R+
Sbjct: 104 AAV---LNGLLYAVGG----FDGSTG--LSSVEAYNIKSNEWFHVAPMNTRRS 147
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 194 GAAGSRISSVERYDVAKNEWVSMDEMP--RFRAGCVGFVAEESGEFWVMGGYGDS---RT 248
G A I SVE YD + W + E+P R RAG V +G + +GG+ S RT
Sbjct: 23 GQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRT 78
Query: 249 ISGVLPVDEYYRDAVVMQ 266
+ PV + + M+
Sbjct: 79 VDSYDPVKDQWTSVANMR 96
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 142 LPSDSAFRFNFL--TFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR 199
L +D+ F +F W ++AP+ SP G A S + +I AGG G GSR
Sbjct: 214 LRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGA------GFKGSR 267
Query: 200 ISSVERYDVAKN 211
E Y KN
Sbjct: 268 ----ENYQNGKN 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,661,074
Number of Sequences: 62578
Number of extensions: 510179
Number of successful extensions: 1236
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 45
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)